AlfalfaGEDB | Msa0262370

M. sativa cultivar zhongmu-4 / Msa0262370

KEGG: K09510
GO: GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262370	XP_013465155.1	97.917	336	7	0	1	336	1	336	0.0	681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262370	sp\|Q3MI00\|DNJB1_BOVIN	46.132	349	162	6	1	334	1	338	1.97e-95	289

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262370	A0A072VM07	97.917	336	7	0	1	336	1	336	0.0	681

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003630	Msa0262370	0.827713	1.344029e-54	-8.615850e-47
Msa0005270	Msa0262370	0.834589	2.746886e-56	-8.615850e-47
Msa0007470	Msa0262370	0.803715	3.054737e-49	-8.615850e-47
Msa0008220	Msa0262370	0.808092	3.671167e-50	-8.615850e-47
Msa0010490	Msa0262370	0.822406	2.409535e-53	-8.615850e-47
Msa0010500	Msa0262370	0.801249	9.845462e-49	-8.615850e-47
Msa0012710	Msa0262370	0.813894	2.031046e-51	-8.615850e-47
Msa0015090	Msa0262370	0.865176	7.137360e-65	-8.615850e-47
Msa0016510	Msa0262370	0.809982	1.445526e-50	-8.615850e-47
Msa0017320	Msa0262370	0.870193	1.755467e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262370	MtrunA17_Chr2g0324921	97.917	336	7	0	1	336	1	336	0.0	681
Msa0262370	MtrunA17_Chr4g0040501	68.362	354	83	5	1	335	1	344	2.06e-173	485
Msa0262370	MtrunA17_Chr2g0282741	66.476	349	93	4	1	335	1	339	1.14e-162	457
Msa0262370	MtrunA17_Chr4g0006391	65.330	349	99	6	1	336	1	340	1.55e-157	444
Msa0262370	MtrunA17_Chr2g0282761	56.447	349	121	5	1	328	1	339	9.06e-132	379
Msa0262370	MtrunA17_Chr3g0138471	54.783	345	129	5	1	336	1	327	2.44e-125	362
Msa0262370	MtrunA17_Chr3g0093111	43.750	336	161	3	3	335	1	311	3.80e-94	282
Msa0262370	MtrunA17_Chr5g0415751	58.621	145	60	0	190	334	16	160	8.36e-57	182
Msa0262370	MtrunA17_Chr3g0124801	44.693	179	98	1	157	334	113	291	3.51e-50	169
Msa0262370	MtrunA17_Chr7g0269841	34.513	339	191	8	5	334	27	343	8.48e-49	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0262370	AT2G20560.1	71.637	342	83	3	1	334	1	336	1.20e-165	465
Msa0262370	AT4G28480.1	69.801	351	85	6	1	334	1	347	7.92e-157	443
Msa0262370	AT3G08910.1	65.476	336	102	4	1	336	1	322	1.01e-154	437
Msa0262370	AT5G01390.1	59.710	345	118	5	1	335	1	334	3.18e-142	405
Msa0262370	AT5G25530.2	55.000	360	117	6	1	336	1	339	7.93e-135	387
Msa0262370	AT5G25530.1	53.804	368	117	7	1	336	1	347	6.34e-132	380
Msa0262370	AT1G10350.1	52.571	350	150	5	1	336	1	348	1.82e-124	361
Msa0262370	AT3G47940.1	54.000	350	145	4	1	336	1	348	1.64e-119	348
Msa0262370	AT1G59725.1	55.786	337	141	4	1	336	1	330	3.00e-119	347
Msa0262370	AT5G01390.2	53.550	338	92	5	1	335	1	276	3.25e-116	337

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Find 124 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCACTTTCCCCGAGA+AGG	0.545291	2_2:+61240366	Msa0262370:CDS
AACTGATACGGAAAGTCATC+AGG	0.465543	2_2:-61238072	None:intergenic
AAGATCACTTTCCCCGAGAA+GGG	0.565073	2_2:+61240367	Msa0262370:CDS
AATCCCTTTGGTGGAATGGG+AGG	0.575318	2_2:+61238144	Msa0262370:CDS
AATCTTGACAGGAGGCAATT+GGG	0.488582	2_2:+61240810	Msa0262370:three_prime_UTR
AATGGCATGTTTGGATCCTA+TGG	0.531436	2_2:+61238183	Msa0262370:CDS
ACAAGCTTCTTCAGGTTGAT+CGG	0.516804	2_2:+61237668	Msa0262370:CDS
ACAGAAAACTCGCCATGAAG+TGG	0.563345	2_2:+61237722	Msa0262370:CDS
ACCAACATTATTCAACTTCA+TGG	0.313695	2_2:+61240993	Msa0262370:three_prime_UTR
ACCATGAAGTTGAATAATGT+TGG	0.535476	2_2:-61240994	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGCTGTTTATGATCAATA+TGG	+	chr2_2:61237970-61237989	Msa0262370:CDS	30.0%
GAGCTGTTTATGATCAATAT+GGG	+	chr2_2:61237971-61237990	Msa0262370:CDS	30.0%
AGCTGTTTATGATCAATATG+GGG	+	chr2_2:61237972-61237991	Msa0262370:CDS	30.0%
AACTCAGCAAAAATATCATC+AGG	-	chr2_2:61238111-61238130	None:intergenic	30.0%
ATTGCTGAGATTTACATGTT+TGG	+	chr2_2:61238470-61238489	Msa0262370:intron	30.0%
TAGAAAAGATTGTGGGAAAT+AGG	+	chr2_2:61238657-61238676	Msa0262370:intron	30.0%
AAGTATTATCTCACTTAGTG+GGG	-	chr2_2:61238884-61238903	None:intergenic	30.0%
CAAGTATTATCTCACTTAGT+GGG	-	chr2_2:61238885-61238904	None:intergenic	30.0%
ACAAGTATTATCTCACTTAG+TGG	-	chr2_2:61238886-61238905	None:intergenic	30.0%
TGGATGAAATAGCAAAAACA+TGG	-	chr2_2:61238945-61238964	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	61237496	61241069	61237496	ID=Msa0262370;Name=Msa0262370
chr2_2	mRNA	61237496	61241069	61237496	ID=Msa0262370-mRNA-1;Parent=Msa0262370;Name=Msa0262370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=156\|1\|1\|1\|1\|1\|3\|328\|336
chr2_2	exon	61237496	61237816	61237496	ID=Msa0262370-mRNA-1:exon:18857;Parent=Msa0262370-mRNA-1
chr2_2	exon	61237949	61238355	61237949	ID=Msa0262370-mRNA-1:exon:18858;Parent=Msa0262370-mRNA-1
chr2_2	exon	61240303	61241069	61240303	ID=Msa0262370-mRNA-1:exon:18859;Parent=Msa0262370-mRNA-1
chr2_2	five_prime_UTR	61237496	61237651	61237496	ID=Msa0262370-mRNA-1:five_prime_utr;Parent=Msa0262370-mRNA-1
chr2_2	CDS	61237652	61237816	61237652	ID=Msa0262370-mRNA-1:cds;Parent=Msa0262370-mRNA-1
chr2_2	CDS	61237949	61238355	61237949	ID=Msa0262370-mRNA-1:cds;Parent=Msa0262370-mRNA-1
chr2_2	CDS	61240303	61240741	61240303	ID=Msa0262370-mRNA-1:cds;Parent=Msa0262370-mRNA-1
chr2_2	three_prime_UTR	61240742	61241069	61240742	ID=Msa0262370-mRNA-1:three_prime_utr;Parent=Msa0262370-mRNA-1

Gene Sequence

>Msa0262370

ATGGGTGTTGACTACTACAAGCTTCTTCAGGTTGATCGGAACGCCAAAGACGATGACTTGAAGAAAGCTTACAGAAAACTCGCCATGAAGTGGCATCCTGATAAGAACCCTAATAACAAAAAAGAAGCTGAAGCCAAATTTAAGCAAATCTCAGAAGCTTATGATGTATTGAGTGATTCTAACAAGAGAGCTGTTTATGATCAATATGGGGAAGATGGGCTGAAGGGTCAAATGCCACCACCACCTGATTCTCATGCCTCTGGTAGTGGTGGTAGTAGAAACTTTTCACCTGATGACTTTCCGTATCAGTTCAATCATCGGACTCCTGATGATATTTTTGCTGAGTTTTTTGGGGATCGAAATCCCTTTGGTGGAATGGGAGGGATGGGAAGAGGTAGCAATGGCATGTTTGGATCCTATGGTGATGCTGGAGGAAGTGGAGTCAATGTGCATCAAGGTCCTCCTCGTAAGGCGCCTCCTATTGAGAACAAGTTGCTATGTTCTCTTGAGGATATATATAAAGGGACCACTAAGAAGATGAAGATCACCAGAGAAATTCTTGATCACAGTGGCAAAGTCACATCGCTGGATGAAATCTTGACAATTAGTGTCAAACCTGGATGGAAGAAGGGGACAAAGATCACTTTCCCCGAGAAGGGAAATGAACATCCAAATACCATACCTGCTGATATCATTTTCATCATCGATGAAAAACCACACAATGTGTTCACTCGTGAAGGAAATGATCTAATTGTAACTCAGAAAATTTCTCTTGCAGAAGCCTTAGCTGGTTGTACAGTGAATCTCACTACACTTGATGGCAGAAATTTGACTGTAGTGATCAACAATGTTGTTCATCCTGAGTATGAGGAGGTTGTTCCAAGAGAAGGAATGCCACTCCCAAAGGATCCAACAAAGAAGGGAAACTTGAGGATAAAGTTCAACGTCAAATTCCCAACTCGGCTCACTTCGGATCAGAAGGCAGGAATGAAGAAAGTCTTGGCTGGATAA

Protein sequence

>Msa0262370

MGVDYYKLLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDSNKRAVYDQYGEDGLKGQMPPPPDSHASGSGGSRNFSPDDFPYQFNHRTPDDIFAEFFGDRNPFGGMGGMGRGSNGMFGSYGDAGGSGVNVHQGPPRKAPPIENKLLCSLEDIYKGTTKKMKITREILDHSGKVTSLDEILTISVKPGWKKGTKITFPEKGNEHPNTIPADIIFIIDEKPHNVFTREGNDLIVTQKISLAEALAGCTVNLTTLDGRNLTVVINNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNVKFPTRLTSDQKAGMKKVLAG*