AlfalfaGEDB | Msa0195560

M. sativa cultivar zhongmu-4 / Msa0195560

KEGG: K08145
GO: GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195560	XP_003594043.1	96.885	321	10	0	1	321	1	321	0.0	637

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195560	sp\|Q8LBI9\|EDL16_ARATH	67.722	316	95	2	1	315	1	310	2.56e-147	427

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195560	G7IFL9	96.885	321	10	0	1	321	1	321	0.0	637

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092220	Msa0195560	0.803947	2.733147e-49	-8.615850e-47
Msa0142560	Msa0195560	0.813037	3.134393e-51	-8.615850e-47
Msa0143590	Msa0195560	0.806392	8.413416e-50	-8.615850e-47
Msa0195560	Msa0237380	0.802604	5.184979e-49	-8.615850e-47
Msa0195560	Msa0277520	0.864252	1.389724e-64	-8.615850e-47
Msa0195560	Msa0685020	0.803852	2.859948e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195560	MtrunA17_Chr2g0286721	96.885	321	10	0	1	321	1	321	0.0	637
Msa0195560	MtrunA17_Chr4g0066581	81.505	319	56	1	1	316	1	319	0.0	540
Msa0195560	MtrunA17_Chr7g0259471	53.628	317	140	2	3	319	1	310	8.65e-117	346
Msa0195560	MtrunA17_Chr7g0259221	56.113	319	133	3	1	319	1	312	3.35e-116	345
Msa0195560	MtrunA17_Chr7g0273281	53.903	269	124	0	52	320	65	333	5.05e-99	301
Msa0195560	MtrunA17_Chr8g0373181	46.732	306	156	3	20	319	13	317	7.12e-90	277
Msa0195560	MtrunA17_Chr1g0155221	43.648	307	165	2	20	319	14	319	2.50e-86	268
Msa0195560	MtrunA17_Chr5g0404191	46.290	283	140	3	6	281	5	282	3.58e-81	249
Msa0195560	MtrunA17_Chr8g0373191	37.778	315	168	2	7	321	5	291	1.12e-71	229
Msa0195560	MtrunA17_Chr7g0273271	55.249	181	81	0	48	228	26	206	2.27e-69	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0195560	AT5G18840.1	67.722	316	95	2	1	315	1	310	2.60e-148	427
Msa0195560	AT2G48020.4	61.204	299	113	1	25	320	1	299	2.61e-132	383
Msa0195560	AT2G48020.3	61.204	299	113	1	25	320	1	299	3.18e-132	381
Msa0195560	AT2G48020.2	61.204	299	113	1	25	320	1	299	4.23e-131	382
Msa0195560	AT2G48020.1	61.204	299	113	1	25	320	1	299	4.23e-131	382
Msa0195560	AT3G05150.2	56.401	289	124	1	34	322	22	308	7.93e-112	334
Msa0195560	AT3G05150.1	54.455	303	131	2	34	336	22	317	8.61e-112	333
Msa0195560	AT3G05150.3	54.455	303	131	2	34	336	22	317	8.61e-112	333
Msa0195560	AT1G54730.11	55.056	267	120	0	54	320	37	303	1.70e-107	318
Msa0195560	AT1G54730.10	55.056	267	120	0	54	320	37	303	2.11e-107	317

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Find 64 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTAGCATTAAGGAAACTA+CGG	0.476801	2_1:+12395020	Msa0195560:CDS
AAGAATTTCAACTAGCATTA+AGG	0.257869	2_1:+12395011	Msa0195560:CDS
AAGGATGCTTGTAAAGAAGT+TGG	0.476415	2_1:+12391368	Msa0195560:CDS
AATGACAATTGAGCAGCATA+AGG	0.485697	2_1:+12391283	None:intergenic
AATTGGAGTTATCTCATATG+TGG	0.595991	2_1:+12393861	Msa0195560:CDS
ACCAGCCATCTAGGAGACTC+AGG	0.545779	2_1:-12394682	None:intergenic
ACCTTTCATTCAACAAGGAA+AGG	0.530081	2_1:+12391349	Msa0195560:CDS
ACTAGCATTAAGGAAACTAC+GGG	0.523883	2_1:+12395021	Msa0195560:CDS
ACTGATATCATTGGCAGGAA+AGG	0.545701	2_1:+12393543	Msa0195560:CDS
AGACCTGATAGCCGCTTGAG+TGG	0.599979	2_1:-12392559	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTTCAACCATGTGAT+TGG	-	chr2_1:12391711-12391730	None:intergenic	30.0%
AATTGGATAAGTGTTTGCAA+TGG	+	chr2_1:12391831-12391850	Msa0195560:intron	30.0%
ATTGGATAAGTGTTTGCAAT+GGG	+	chr2_1:12391832-12391851	Msa0195560:intron	30.0%
ATGAGTGTATCAAGAAGAAT+AGG	+	chr2_1:12392769-12392788	Msa0195560:intron	30.0%
AATACGTGTCATAGATTCAT+AGG	-	chr2_1:12393106-12393125	None:intergenic	30.0%
ATGAATCTATGACACGTATT+AGG	+	chr2_1:12393106-12393125	Msa0195560:intron	30.0%
TGTATATCACTATCCATTAC+CGG	+	chr2_1:12393240-12393259	Msa0195560:intron	30.0%
AATTGGAGTTATCTCATATG+TGG	+	chr2_1:12393861-12393880	Msa0195560:CDS	30.0%
CATTCATCAAGTGATTTGAA+AGG	-	chr2_1:12394078-12394097	None:intergenic	30.0%
CAATCAGTATGTGTTTAGTT+TGG	-	chr2_1:12394197-12394216	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	12391284	12396050	12391284	ID=Msa0195560;Name=Msa0195560
chr2_1	mRNA	12391284	12396050	12391284	ID=Msa0195560-mRNA-1;Parent=Msa0195560;Name=Msa0195560-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.36\|0.25\|0.91\|1\|1\|12\|0\|345
chr2_1	exon	12391284	12391481	12391284	ID=Msa0195560-mRNA-1:exon:5416;Parent=Msa0195560-mRNA-1
chr2_1	exon	12392543	12392605	12392543	ID=Msa0195560-mRNA-1:exon:5417;Parent=Msa0195560-mRNA-1
chr2_1	exon	12393477	12393566	12393477	ID=Msa0195560-mRNA-1:exon:5418;Parent=Msa0195560-mRNA-1
chr2_1	exon	12393658	12393717	12393658	ID=Msa0195560-mRNA-1:exon:5419;Parent=Msa0195560-mRNA-1
chr2_1	exon	12393817	12393882	12393817	ID=Msa0195560-mRNA-1:exon:5420;Parent=Msa0195560-mRNA-1
chr2_1	exon	12394304	12394369	12394304	ID=Msa0195560-mRNA-1:exon:5421;Parent=Msa0195560-mRNA-1
chr2_1	exon	12394453	12394528	12394453	ID=Msa0195560-mRNA-1:exon:5422;Parent=Msa0195560-mRNA-1
chr2_1	exon	12394638	12394702	12394638	ID=Msa0195560-mRNA-1:exon:5423;Parent=Msa0195560-mRNA-1
chr2_1	exon	12394992	12395084	12394992	ID=Msa0195560-mRNA-1:exon:5424;Parent=Msa0195560-mRNA-1
chr2_1	exon	12395184	12395264	12395184	ID=Msa0195560-mRNA-1:exon:5425;Parent=Msa0195560-mRNA-1
chr2_1	exon	12395359	12395443	12395359	ID=Msa0195560-mRNA-1:exon:5426;Parent=Msa0195560-mRNA-1
chr2_1	exon	12395956	12396050	12395956	ID=Msa0195560-mRNA-1:exon:5427;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12391284	12391481	12391284	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12392543	12392605	12392543	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12393477	12393566	12393477	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12393658	12393717	12393658	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12393817	12393882	12393817	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12394304	12394369	12394304	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12394453	12394528	12394453	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12394638	12394702	12394638	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12394992	12395084	12394992	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12395184	12395264	12395184	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12395359	12395443	12395359	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1
chr2_1	CDS	12395956	12396050	12395956	ID=Msa0195560-mRNA-1:cds;Parent=Msa0195560-mRNA-1

Gene Sequence

>Msa0195560

ATGACAATTGAGCAGCATAAGGATATTGAGGATGGAGAAACTAATGGGTTTCAGTATTTGCAAGAACCTTTCATTCAACAAGGAAAGGATGCTTGTAAAGAAGTTGGATCAGATAAAAGTGTGGAAAATGGATCCATTGGAATGGTTCTGCTTAGCACATTTGTTGCTGTTTGTGGTTCTTTTTCATTTGGAACTTGTGTGGGTTATTCAGCACCCACTCAAGCGGCTATCAGGTCTGATCTTAATCTATCTCTTGCTGAGTTTTCAATGTTTGGTTCTTTGGTGACCATTGGTGCAATGCTTGGAGCTATAACAAGTGGTCGAGTTACTGATATCATTGGCAGGAAAGGGGCTATGAGAATTTCCACAGGATTTTGTATCATAGGATGGCTAGCTGTCTTCTTCTCTAAGAGTTCTTACACACTTGACTTGGGAAGGTTTTTCACAGGATATGGAATTGGAGTTATCTCATATGTGGTTCCAGTATATATAGCAGAAATAGCACCAAAAAATCTTAGAGGAGGACTTGCAACAACAAATCAGCTTATGATTGTTATTGGATCATCAATGTCATTTTTAATAGGAAGTCTCATAAATTGGCGACAACTAGCTCTAGCAGGCCTAGTTCCTTGCATTTGCTTGCTTGTTGGTCTGTGCTTCATTCCTGAGTCTCCTAGATGGCTGGCAAAGGTTGGTCGTGAAAAAGAATTTCAACTAGCATTAAGGAAACTACGGGGTAAAGACGTTGATATTTCTGATGAAGCTAATGAAATTCTGGATAATATTGAAACTCTTCAAAGCCTTCCTAAGACTAAGTTTTTGGATTTGTTCCAAAGCAAATATGTGCGCTCTGTAGTTATTGGAGTTGGATTAATGGCATTTCAACAATCTGTTGGAATTAATGGCATAGGATTCTATACAGCTGAGACTTTTGTAGCAGCTGGTATGCCAAATGCCCTAGCCAATCCAAAATCTGCAAGCCTTACTGAATTAGTGCGGCGAACTATCAACAAATTCTGTGGTTTCAAGTCTCAATGA

Protein sequence

>Msa0195560

MTIEQHKDIEDGETNGFQYLQEPFIQQGKDACKEVGSDKSVENGSIGMVLLSTFVAVCGSFSFGTCVGYSAPTQAAIRSDLNLSLAEFSMFGSLVTIGAMLGAITSGRVTDIIGRKGAMRISTGFCIIGWLAVFFSKSSYTLDLGRFFTGYGIGVISYVVPVYIAEIAPKNLRGGLATTNQLMIVIGSSMSFLIGSLINWRQLALAGLVPCICLLVGLCFIPESPRWLAKVGREKEFQLALRKLRGKDVDISDEANEILDNIETLQSLPKTKFLDLFQSKYVRSVVIGVGLMAFQQSVGINGIGFYTAETFVAAGMPNALANPKSASLTELVRRTINKFCGFKSQ*