AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142560 MtrunA17_Chr2g0286721 98.144 485 9 0 1 485 1 485 0.0 963
Msa0142560 MtrunA17_Chr4g0066581 81.762 488 86 1 1 485 1 488 0.0 831
Msa0142560 MtrunA17_Chr7g0259221 56.082 485 205 4 1 485 1 477 0.0 531
Msa0142560 MtrunA17_Chr7g0259471 53.623 483 216 3 3 485 1 475 0.0 525
Msa0142560 MtrunA17_Chr7g0273281 55.760 434 191 1 52 485 65 497 1.93e-173 497
Msa0142560 MtrunA17_Chr8g0373181 43.933 478 257 4 13 480 6 482 4.60e-137 404
Msa0142560 MtrunA17_Chr1g0155221 43.552 473 254 3 20 480 14 485 5.31e-134 396
Msa0142560 MtrunA17_Chr8g0373191 37.708 480 267 3 7 482 5 456 5.35e-112 338
Msa0142560 MtrunA17_Chr7g0273261 54.185 227 101 2 258 484 15 238 1.92e-79 248
Msa0142560 MtrunA17_Chr5g0404191 45.936 283 141 3 6 281 5 282 8.11e-78 245
Msa0142560 MtrunA17_Chr7g0273271 54.696 181 82 0 48 228 26 206 1.99e-65 210
Msa0142560 MtrunA17_Chr6g0457781 30.786 471 305 7 27 485 83 544 5.61e-58 200
Msa0142560 MtrunA17_Chr7g0250881 30.490 469 308 7 26 484 43 503 2.33e-56 195
Msa0142560 MtrunA17_Chr1g0213631 34.204 383 240 6 109 480 48 429 2.65e-56 194
Msa0142560 MtrunA17_Chr4g0021771 29.652 489 316 9 12 480 19 499 1.65e-55 193
Msa0142560 MtrunA17_Chr1g0213611 34.447 389 234 8 109 480 141 525 1.37e-54 191
Msa0142560 MtrunA17_Chr2g0282031 31.116 421 269 7 77 480 81 497 1.98e-51 182
Msa0142560 MtrunA17_Chr4g0034681 29.075 454 287 9 60 482 41 490 9.12e-51 181
Msa0142560 MtrunA17_Chr4g0039651 26.626 492 321 9 24 481 13 498 2.16e-50 179
Msa0142560 MtrunA17_Chr7g0214451 32.990 388 241 7 107 480 94 476 2.38e-50 179
Msa0142560 MtrunA17_Chr3g0144361 30.254 433 273 8 77 480 56 488 3.27e-49 176
Msa0142560 MtrunA17_Chr4g0036021 28.194 454 286 9 60 480 38 484 1.46e-47 172
Msa0142560 MtrunA17_Chr4g0032021 27.984 486 308 11 30 483 79 554 9.69e-47 170
Msa0142560 MtrunA17_Chr5g0432581 29.425 435 274 11 77 480 47 479 2.92e-45 165
Msa0142560 MtrunA17_Chr4g0004821 30.405 444 285 11 50 480 37 469 4.13e-43 159
Msa0142560 MtrunA17_Chr8g0373531 29.385 439 269 13 77 480 47 479 6.08e-42 156
Msa0142560 MtrunA17_Chr6g0485661 28.571 448 294 9 50 475 59 502 6.21e-42 156
Msa0142560 MtrunA17_Chr8g0390521 28.302 477 298 10 37 480 3 468 2.18e-41 154
Msa0142560 MtrunA17_Chr6g0486021 29.310 464 288 12 38 480 39 483 4.13e-41 153
Msa0142560 MtrunA17_Chr3g0085971 28.302 424 284 9 73 480 66 485 5.14e-38 145
Msa0142560 MtrunA17_Chr3g0115741 26.521 411 273 7 89 479 85 486 5.58e-37 142
Msa0142560 MtrunA17_Chr3g0115721 27.027 407 276 7 89 479 82 483 2.26e-36 140
Msa0142560 MtrunA17_Chr3g0128081 27.178 482 308 13 36 479 9 485 2.31e-35 138
Msa0142560 MtrunA17_Chr3g0078791 26.980 404 261 9 89 479 28 410 4.59e-35 135
Msa0142560 MtrunA17_Chr3g0119401 26.889 450 296 10 55 485 99 534 8.14e-35 136
Msa0142560 MtrunA17_Chr4g0065311 26.667 495 301 16 29 479 2 478 1.91e-34 135
Msa0142560 MtrunA17_Chr1g0205671 26.536 407 277 7 89 479 83 483 6.05e-34 134
Msa0142560 MtrunA17_Chr1g0205681 25.666 413 285 7 87 483 82 488 1.07e-33 133
Msa0142560 MtrunA17_Chr3g0115711 24.257 404 292 6 88 479 81 482 1.16e-33 133
Msa0142560 MtrunA17_Chr2g0303731 30.952 336 215 7 49 368 26 360 1.45e-33 133
Msa0142560 MtrunA17_Chr5g0420841 26.716 408 279 9 89 480 82 485 1.66e-33 132
Msa0142560 MtrunA17_Chr4g0065324 27.053 414 264 12 89 479 88 486 1.80e-33 132
Msa0142560 MtrunA17_Chr5g0394341 27.518 407 273 9 89 479 83 483 2.64e-33 132
Msa0142560 MtrunA17_Chr3g0115781 24.697 413 280 8 89 480 84 486 2.74e-33 132
Msa0142560 MtrunA17_Chr3g0078971 26.170 470 303 11 48 480 22 484 2.91e-33 132
Msa0142560 MtrunA17_Chr5g0403831 25.838 507 316 16 13 480 7 492 3.43e-32 129
Msa0142560 MtrunA17_Chr3g0128171 25.553 407 283 9 89 479 36 438 6.38e-32 127
Msa0142560 MtrunA17_Chr3g0115751 26.277 411 274 7 89 479 87 488 8.72e-32 127
Msa0142560 MtrunA17_Chr1g0205691 28.460 383 258 7 110 479 104 483 1.38e-31 127
Msa0142560 MtrunA17_Chr3g0078991 27.374 358 237 9 140 480 134 485 5.89e-31 125
Msa0142560 MtrunA17_Chr8g0390141 29.584 409 261 12 89 479 86 485 8.30e-31 125
Msa0142560 MtrunA17_Chr3g0121674 30.389 283 189 6 203 479 2 282 1.46e-30 120
Msa0142560 MtrunA17_Chr5g0417611 25.293 427 293 12 74 479 65 486 3.20e-30 123
Msa0142560 MtrunA17_Chr8g0390261 26.716 408 274 10 89 479 86 485 7.99e-30 122
Msa0142560 MtrunA17_Chr4g0048051 27.907 387 259 9 109 479 103 485 1.30e-29 121
Msa0142560 MtrunA17_Chr1g0164871 24.949 489 325 8 28 480 2 484 2.11e-29 120
Msa0142560 MtrunA17_Chr1g0164851 24.744 489 326 8 28 480 2 484 4.16e-29 120
Msa0142560 MtrunA17_Chr8g0376611 30.627 271 176 5 98 356 11 281 4.22e-29 120
Msa0142560 MtrunA17_Chr8g0376611 36.893 103 56 2 383 480 382 480 6.07e-12 67.8
Msa0142560 MtrunA17_Chr4g0048411 26.768 396 264 8 109 485 103 491 5.20e-29 119
Msa0142560 MtrunA17_Chr6g0486681 27.470 415 262 11 89 479 86 485 5.73e-29 119
Msa0142560 MtrunA17_Chr6g0486671 27.470 415 262 11 89 479 86 485 5.73e-29 119
Msa0142560 MtrunA17_Chr5g0404181 43.200 125 65 2 361 480 5 128 1.09e-28 110
Msa0142560 MtrunA17_Chr2g0303701 29.520 271 178 6 109 368 89 357 2.00e-28 118
Msa0142560 MtrunA17_Chr8g0376631 30.620 258 163 6 107 350 87 342 5.79e-27 114
Msa0142560 MtrunA17_Chr8g0376631 35.922 103 57 2 383 480 451 549 4.14e-11 65.5
Msa0142560 MtrunA17_Chr7g0221631 65.217 69 24 0 380 448 47 115 6.01e-27 104
Msa0142560 MtrunA17_Chr7g0257631 27.553 421 264 14 82 479 116 518 8.59e-27 113
Msa0142560 MtrunA17_Chr5g0445601 27.316 421 265 14 82 479 82 484 1.17e-26 112
Msa0142560 MtrunA17_Chr5g0437021 25.799 407 281 6 89 480 84 484 1.84e-26 112
Msa0142560 MtrunA17_Chr2g0290181 27.698 278 184 5 107 368 88 364 2.65e-24 106
Msa0142560 MtrunA17_Chr2g0290181 37.374 99 61 1 383 480 455 553 1.64e-13 72.8
Msa0142560 MtrunA17_Chr3g0115731 24.870 386 247 10 107 479 107 462 2.15e-23 102
Msa0142560 MtrunA17_Chr8g0376601 27.863 262 173 5 109 356 89 348 1.33e-22 100
Msa0142560 MtrunA17_Chr4g0065351 26.347 334 212 10 167 479 1 321 1.33e-21 96.3
Msa0142560 MtrunA17_Chr3g0144261 32.653 196 118 4 77 262 32 223 5.44e-20 93.6
Msa0142560 MtrunA17_Chr3g0144261 28.111 217 140 3 276 479 500 713 2.61e-14 75.5
Msa0142560 MtrunA17_Chr7g0259451 66.000 50 17 0 399 448 1 50 2.78e-18 78.6
Msa0142560 MtrunA17_Chr5g0419321 29.070 258 154 7 246 479 479 731 2.39e-17 85.1
Msa0142560 MtrunA17_Chr5g0419321 27.136 199 135 4 63 254 50 245 8.72e-15 77.0
Msa0142560 MtrunA17_Chr2g0290161 24.908 273 172 6 107 368 21 271 4.82e-17 83.6
Msa0142560 MtrunA17_Chr5g0407441 29.870 231 141 6 267 479 478 705 1.18e-16 83.2
Msa0142560 MtrunA17_Chr5g0407441 31.875 160 97 4 104 254 61 217 2.03e-13 72.8
Msa0142560 MtrunA17_Chr5g0434231 31.447 159 89 2 98 255 14 153 1.64e-16 76.6
Msa0142560 MtrunA17_Chr8g0370151 28.910 211 132 5 283 479 138 344 3.43e-15 77.0
Msa0142560 MtrunA17_Chr3g0146061 28.440 218 140 3 275 479 509 723 3.66e-15 78.2
Msa0142560 MtrunA17_Chr3g0146061 34.161 161 98 3 97 249 54 214 3.32e-14 75.5
Msa0142560 MtrunA17_Chr5g0434251 35.922 103 57 2 383 480 38 136 1.14e-11 63.2
Msa0142560 MtrunA17_Chr8g0356471 23.198 444 266 17 68 476 104 507 3.35e-11 65.5
Msa0142560 MtrunA17_Chr8g0370141 26.601 203 133 7 66 254 17 217 3.90e-11 64.7
Msa0142560 MtrunA17_Chr4g0042131 24.103 390 253 12 107 478 45 409 9.23e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142560 AT5G18840.1 69.628 484 140 2 1 483 1 478 0.0 677
Msa0142560 AT2G48020.2 58.531 463 188 2 25 484 1 462 0.0 562
Msa0142560 AT2G48020.1 58.531 463 188 2 25 484 1 462 0.0 562
Msa0142560 AT3G05150.1 54.167 480 206 4 3 481 1 467 0.0 516
Msa0142560 AT3G05150.3 54.167 480 206 4 3 481 1 467 0.0 516
Msa0142560 AT3G05150.2 53.942 482 208 4 3 483 1 469 0.0 516
Msa0142560 AT1G54730.2 54.734 433 189 3 54 483 37 465 1.71e-172 494
Msa0142560 AT1G54730.3 53.885 399 183 1 54 452 37 434 2.36e-158 456
Msa0142560 AT1G54730.5 51.395 430 187 2 54 483 37 444 2.82e-156 452
Msa0142560 AT2G48020.4 57.182 369 154 2 25 390 1 368 3.10e-150 434
Msa0142560 AT1G54730.4 50.627 399 175 2 54 452 37 413 8.11e-142 414
Msa0142560 AT3G20460.1 44.008 484 266 4 3 484 7 487 1.73e-141 416
Msa0142560 AT1G08930.1 43.838 495 264 5 3 485 1 493 4.75e-139 409
Msa0142560 AT1G08930.2 43.838 495 264 5 3 485 1 493 4.75e-139 409
Msa0142560 AT3G05165.3 41.935 465 260 3 20 484 10 464 6.51e-138 405
Msa0142560 AT3G05165.2 41.935 465 260 3 20 484 10 464 6.51e-138 405
Msa0142560 AT3G05165.1 41.935 465 260 3 20 484 10 464 6.51e-138 405
Msa0142560 AT5G27350.1 46.405 459 243 2 25 483 9 464 1.12e-137 405
Msa0142560 AT3G05160.1 44.954 436 239 1 49 484 21 455 1.36e-137 404
Msa0142560 AT2G48020.3 59.036 332 132 2 25 353 1 331 1.59e-137 400
Msa0142560 AT1G54730.9 53.571 364 162 3 54 414 37 396 1.71e-136 400
Msa0142560 AT1G54730.7 53.571 364 162 3 54 414 37 396 1.71e-136 400
Msa0142560 AT1G08920.1 46.119 438 235 1 48 485 31 467 6.29e-136 400
Msa0142560 AT4G04760.1 45.747 435 232 2 50 481 32 465 5.22e-135 399
Msa0142560 AT5G27360.1 46.207 435 233 1 49 483 35 468 2.09e-133 394
Msa0142560 AT1G75220.1 42.739 482 265 3 10 481 4 484 2.19e-133 395
Msa0142560 AT1G08920.2 45.393 445 235 2 48 485 31 474 3.55e-133 394
Msa0142560 AT5G27360.3 43.659 481 252 4 1 481 53 514 1.30e-132 394
Msa0142560 AT4G04750.1 43.498 446 249 2 41 484 28 472 3.66e-130 386
Msa0142560 AT4G04750.2 43.498 446 249 2 41 484 28 472 3.66e-130 386
Msa0142560 AT4G04750.3 43.498 446 249 2 41 484 72 516 1.07e-129 387
Msa0142560 AT1G19450.1 41.701 482 270 3 10 481 5 485 2.74e-127 379
Msa0142560 AT3G05155.1 43.764 457 241 4 36 480 3 455 3.43e-127 378
Msa0142560 AT1G08890.1 45.089 448 241 2 33 480 15 457 4.94e-127 377
Msa0142560 AT3G05165.6 42.396 434 240 3 20 453 10 433 7.65e-127 379
Msa0142560 AT3G05160.3 44.198 405 225 1 80 484 3 406 8.50e-126 372
Msa0142560 AT3G05160.2 44.198 405 225 1 80 484 3 406 8.50e-126 372
Msa0142560 AT1G08920.3 46.633 401 213 1 48 448 31 430 5.80e-125 372
Msa0142560 AT4G04760.3 44.988 409 221 2 80 485 3 410 5.26e-124 368
Msa0142560 AT3G05400.1 43.243 444 251 1 37 480 14 456 8.50e-123 367
Msa0142560 AT1G08900.1 43.678 435 244 1 49 483 25 458 2.35e-122 365
Msa0142560 AT1G08900.2 43.678 435 244 1 49 483 25 458 2.35e-122 365
Msa0142560 AT4G04760.2 43.280 439 234 5 50 481 32 462 6.31e-121 362
Msa0142560 AT1G54730.8 49.584 361 160 2 54 414 37 375 4.34e-120 357
Msa0142560 AT1G54730.11 54.967 302 135 1 54 355 37 337 5.51e-118 350
Msa0142560 AT3G05165.4 41.190 420 237 3 20 439 10 419 1.43e-117 353
Msa0142560 AT3G05165.5 41.190 420 237 3 20 439 10 419 1.43e-117 353
Msa0142560 AT1G08900.5 43.165 417 236 1 67 483 1 416 1.91e-116 349
Msa0142560 AT1G08900.3 42.759 435 240 2 49 483 25 450 1.50e-115 348
Msa0142560 AT3G05400.2 41.892 444 237 3 37 480 14 436 1.93e-112 339
Msa0142560 AT1G54730.10 54.770 283 127 1 54 336 37 318 2.19e-107 322
Msa0142560 AT1G54730.6 54.770 283 127 1 54 336 37 318 2.19e-107 322
Msa0142560 AT1G08900.4 42.289 402 231 1 49 450 25 425 2.07e-106 324
Msa0142560 AT5G27360.2 44.932 365 200 1 119 483 1 364 1.00e-105 320
Msa0142560 AT5G27360.5 44.932 365 200 1 119 483 1 364 1.00e-105 320
Msa0142560 AT5G27360.4 41.646 401 216 2 49 449 35 417 5.40e-101 310
Msa0142560 AT3G05155.2 43.293 328 171 3 36 352 3 326 3.64e-87 271
Msa0142560 AT5G16150.2 31.064 470 307 6 26 485 82 544 9.04e-58 200
Msa0142560 AT5G16150.1 31.064 470 307 6 26 485 82 544 9.04e-58 200
Msa0142560 AT5G16150.3 31.064 470 307 6 26 485 82 544 9.04e-58 200
Msa0142560 AT3G03090.1 28.884 502 310 12 9 481 17 500 4.48e-54 189
Msa0142560 AT5G17010.1 27.984 511 319 12 4 481 6 500 5.12e-53 186
Msa0142560 AT5G17010.3 27.984 511 319 12 4 481 6 500 5.12e-53 186
Msa0142560 AT5G17010.4 27.984 511 319 12 4 481 6 500 5.12e-53 186
Msa0142560 AT2G43330.1 33.248 391 234 10 109 480 94 476 1.05e-51 183
Msa0142560 AT5G59250.1 29.339 484 305 11 30 483 80 556 5.51e-49 177
Msa0142560 AT2G16130.1 29.680 438 279 7 77 485 54 491 3.39e-48 174
Msa0142560 AT2G20780.1 30.820 451 285 9 49 480 55 497 4.09e-48 174
Msa0142560 AT2G16120.1 28.758 459 290 7 60 485 37 491 6.85e-48 173
Msa0142560 AT2G20780.2 30.588 425 262 9 78 480 26 439 1.02e-47 171
Msa0142560 AT3G18830.1 27.273 440 284 8 77 484 64 499 8.67e-47 170
Msa0142560 AT4G36670.1 29.605 456 291 9 55 481 23 477 1.45e-44 163
Msa0142560 AT1G05030.1 29.556 450 283 9 55 485 85 519 3.41e-43 160
Msa0142560 AT1G05030.2 29.829 409 257 7 93 485 73 467 3.53e-43 159
Msa0142560 AT1G67300.2 29.053 475 288 11 33 480 35 487 1.66e-42 158
Msa0142560 AT2G18480.1 26.281 449 296 7 63 480 36 480 2.68e-41 155
Msa0142560 AT1G67300.1 29.053 475 287 12 33 480 35 486 6.16e-41 153
Msa0142560 AT1G67300.3 29.053 475 287 12 33 480 35 486 6.16e-41 153
Msa0142560 AT1G79820.2 29.764 467 286 12 36 480 41 487 7.92e-38 145
Msa0142560 AT1G79820.1 29.764 467 286 12 36 480 41 487 7.92e-38 145
Msa0142560 AT3G05960.1 27.553 421 261 9 89 483 80 482 2.16e-34 135
Msa0142560 AT5G26340.1 27.941 408 270 9 89 479 84 484 2.57e-34 135
Msa0142560 AT4G21480.1 27.737 411 273 8 87 480 81 484 6.21e-34 134
Msa0142560 AT1G67300.6 28.605 423 253 11 33 429 35 434 1.28e-33 132
Msa0142560 AT1G67300.7 28.605 423 253 11 33 429 35 434 1.28e-33 132
Msa0142560 AT5G26250.1 26.747 415 272 9 89 483 81 483 3.85e-33 132
Msa0142560 AT1G11260.1 26.829 410 274 9 89 479 83 485 3.90e-33 132
Msa0142560 AT1G67300.4 28.814 413 245 11 33 419 35 424 8.75e-33 129
Msa0142560 AT1G67300.5 28.814 413 245 11 33 419 35 424 8.75e-33 129
Msa0142560 AT1G79820.4 29.540 413 254 10 36 429 41 435 1.33e-32 129
Msa0142560 AT5G23270.1 26.341 410 275 8 89 479 85 486 3.70e-31 126
Msa0142560 AT3G19940.1 25.428 409 279 9 89 479 85 485 1.08e-30 125
Msa0142560 AT1G77210.2 27.696 408 270 11 89 479 86 485 4.27e-30 123
Msa0142560 AT1G77210.1 27.696 408 270 11 89 479 86 485 4.27e-30 123
Msa0142560 AT5G17010.2 23.896 498 274 12 21 481 8 437 6.54e-30 122
Msa0142560 AT1G07340.1 26.733 404 279 8 89 479 82 481 7.87e-30 122
Msa0142560 AT1G30220.1 31.471 340 209 11 49 368 28 363 2.97e-29 121
Msa0142560 AT1G30220.1 35.922 103 57 2 383 480 455 553 1.40e-11 67.4
Msa0142560 AT3G19930.1 26.056 426 292 9 70 480 67 484 5.13e-29 120
Msa0142560 AT3G19930.2 26.056 426 292 9 70 480 67 484 5.13e-29 120
Msa0142560 AT1G50310.1 25.366 410 279 10 89 479 85 486 9.47e-29 119
Msa0142560 AT4G02050.2 27.635 351 230 9 145 479 142 484 6.99e-28 117
Msa0142560 AT4G02050.1 27.635 351 230 9 145 479 142 484 6.99e-28 117
Msa0142560 AT5G61520.2 26.944 360 227 9 142 479 94 439 5.71e-26 110
Msa0142560 AT5G61520.1 26.944 360 227 9 142 479 142 487 5.89e-26 111
Msa0142560 AT1G34580.1 25.366 410 282 11 89 479 83 487 1.99e-24 106
Msa0142560 AT1G34580.2 25.366 410 282 11 89 479 33 437 2.14e-24 105
Msa0142560 AT1G79820.3 27.292 469 247 14 36 480 41 439 2.32e-23 102
Msa0142560 AT2G35740.1 26.621 293 197 6 93 369 73 363 2.98e-23 103
Msa0142560 AT2G35740.1 37.374 99 61 1 383 480 458 556 1.50e-13 73.6
Msa0142560 AT4G16480.2 29.197 274 170 9 109 363 90 358 1.02e-22 102
Msa0142560 AT4G16480.2 35.354 99 63 1 383 480 459 557 6.79e-13 71.2
Msa0142560 AT4G16480.3 29.197 274 170 9 109 363 90 358 1.02e-22 102
Msa0142560 AT4G16480.3 35.354 99 63 1 383 480 459 557 6.79e-13 71.2
Msa0142560 AT4G16480.1 29.197 274 170 9 109 363 90 358 1.02e-22 102
Msa0142560 AT4G16480.1 35.354 99 63 1 383 480 459 557 6.79e-13 71.2
Msa0142560 AT1G50310.2 25.000 344 219 11 161 479 14 343 1.33e-22 99.8
Msa0142560 AT1G77210.3 28.070 342 211 12 160 479 8 336 2.68e-22 98.6
Msa0142560 AT3G51490.2 35.119 168 95 4 97 254 54 217 1.16e-17 86.7
Msa0142560 AT3G51490.2 29.358 218 138 5 275 479 502 716 9.25e-16 80.5
Msa0142560 AT3G51490.1 35.119 168 95 4 97 254 54 217 1.23e-17 86.7
Msa0142560 AT3G51490.1 29.907 214 134 5 275 479 502 708 6.80e-13 71.6
Msa0142560 AT3G51490.3 35.119 168 95 4 97 254 4 167 1.41e-17 86.3
Msa0142560 AT3G51490.3 29.358 218 138 5 275 479 452 666 9.52e-16 80.5
Msa0142560 AT1G20840.2 28.182 220 150 3 51 263 6 224 1.87e-17 85.9
Msa0142560 AT1G20840.2 26.728 217 143 3 276 479 502 715 4.75e-14 75.1
Msa0142560 AT1G20840.1 28.182 220 150 3 51 263 6 224 1.87e-17 85.9
Msa0142560 AT1G20840.1 26.728 217 143 3 276 479 502 715 4.75e-14 75.1
Msa0142560 AT4G35300.9 34.021 194 104 6 77 254 32 217 3.17e-17 85.1
Msa0142560 AT4G35300.9 29.358 218 138 4 275 479 498 712 3.60e-15 79.0
Msa0142560 AT4G35300.2 34.021 194 104 6 77 254 32 217 3.17e-17 85.1
Msa0142560 AT4G35300.2 29.358 218 138 4 275 479 498 712 3.60e-15 79.0
Msa0142560 AT4G35300.3 34.021 194 104 6 77 254 32 217 3.17e-17 85.1
Msa0142560 AT4G35300.3 29.358 218 138 4 275 479 498 712 3.60e-15 79.0
Msa0142560 AT4G35300.4 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.4 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT4G35300.8 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.8 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT4G35300.6 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.6 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT4G35300.11 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.11 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT4G35300.1 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.1 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT4G35300.10 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.10 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT4G35300.7 34.021 194 104 6 77 254 32 217 3.23e-17 85.1
Msa0142560 AT4G35300.7 29.358 218 138 4 275 479 508 722 3.27e-15 79.0
Msa0142560 AT1G54730.1 54.839 62 28 0 100 161 1 62 8.75e-17 75.1
Msa0142560 AT1G79820.5 26.050 357 176 11 144 480 89 377 1.41e-15 79.0
Msa0142560 AT4G35300.5 29.358 218 138 4 275 479 311 525 1.94e-15 79.3

Find 110 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATCTGTTGGAATTAA+TGG 0.124064 1_4:-1498563 Msa0142560:CDS
TTGCAGCTTATGATTGTTAT+TGG 0.148748 1_4:-1499551 Msa0142560:intron
CATTAAATATATCAAAATAT+TGG 0.220828 1_4:+1496956 None:intergenic
CAAAACATTGGAAGAAATTC+AGG 0.233434 1_4:-1497066 Msa0142560:CDS
TGCTGGAAGTTTGGTGGTTT+TGG 0.236584 1_4:-1497331 Msa0142560:CDS
TGATAACTAATGCCGATAAT+TGG 0.240590 1_4:+1496896 None:intergenic
TAATAGGAAGTCTCATAAAT+TGG 0.247106 1_4:-1499511 Msa0142560:CDS
TGATGAAGCTAATGAAATTC+TGG 0.251682 1_4:-1498883 Msa0142560:intron
TCAGATTGGAGTTGGATTAA+TGG 0.253920 1_4:-1498591 Msa0142560:intron
CATTAGTTATCAAATTCTTT+TGG 0.260068 1_4:-1496885 Msa0142560:three_prime_UTR
GCAGTTCCTTTCACATTTAT+CGG 0.267185 1_4:+1497351 None:intergenic
TCCAGACTTGTCCATCAAAA+TGG 0.279878 1_4:+1497969 None:intergenic
AAGAGTTTCAACTAGCATTA+AGG 0.282903 1_4:-1498935 Msa0142560:CDS
ATGGCTCCCAACATGGTAAA+TGG 0.286883 1_4:+1497988 None:intergenic
TATGCTTTGTCTGTCCTAAA+TGG 0.293601 1_4:+1496860 None:intergenic
TTTGAACCAAGATGTCATTA+AGG 0.306072 1_4:-1496817 Msa0142560:three_prime_UTR
AGTTCCTTGCATTTGCTTGC+TGG 0.311272 1_4:-1499356 Msa0142560:CDS
ACCAGCCATCTAGGAGATTC+AGG 0.320321 1_4:+1499316 None:intergenic
AGCACATTTGTTGCTGTTTG+TGG 0.330585 1_4:-1502600 Msa0142560:CDS
TCAGATAAAAGTGTGGAAAA+TGG 0.337919 1_4:-1502645 Msa0142560:CDS
TGGATCGGTTATATACATTA+TGG 0.339834 1_4:-1497005 Msa0142560:three_prime_UTR
GCTATTTCTGCTATATATAC+TGG 0.345158 1_4:+1499700 None:intergenic
TTGGGTTGGGATCAGTTCCT+TGG 0.348262 1_4:-1497487 Msa0142560:CDS
CAAAGCATAGATAGAATAAC+AGG 0.349701 1_4:-1496846 Msa0142560:three_prime_UTR
TCTGCAAGTGGAACATTCTT+AGG 0.352381 1_4:-1497834 Msa0142560:CDS
ATTAAATATATCAAAATATT+GGG 0.353502 1_4:+1496957 None:intergenic
GACATTGCTTCTGTCTCTCT+TGG 0.367254 1_4:-1496983 Msa0142560:three_prime_UTR
TAGGTTCCATTTACCATGTT+GGG 0.372499 1_4:-1497994 Msa0142560:CDS
GTAAGTATTACTGTTATAAG+AGG 0.375329 1_4:+1497940 None:intergenic
TTCTTAGGCTGCTTTATAAC+CGG 0.380196 1_4:-1497819 Msa0142560:CDS
GAATGAGCAATATATATATA+TGG 0.383413 1_4:-1497025 Msa0142560:three_prime_UTR
CACCCACTCAAGCGGCTATC+AGG 0.386134 1_4:-1501482 Msa0142560:CDS
TGGATCAGAATCAAAGCTTA+TGG 0.390013 1_4:-1497696 Msa0142560:intron
GCTAGCTGTCTTCTTCTCTA+AGG 0.393869 1_4:-1500342 Msa0142560:intron
TGGGTTGGGATCAGTTCCTT+GGG 0.394114 1_4:-1497486 Msa0142560:CDS
CAGAGCGCACGTATTTGCTT+TGG 0.395261 1_4:+1498709 None:intergenic
ATTGAGGATGGAGAAACTAA+TGG 0.405911 1_4:-1502729 Msa0142560:CDS
CCTGGACACTGTCCAATTAT+CGG 0.407891 1_4:-1496908 Msa0142560:three_prime_UTR
ATTAGCAGTTGCAGGTGTAT+TGG 0.415758 1_4:-1497656 Msa0142560:intron
CTACAAATAGAATGGTTAAG+AGG 0.421225 1_4:+1497114 None:intergenic
TTGAGGATGGAGAAACTAAT+GGG 0.428281 1_4:-1502728 Msa0142560:CDS
GAACAATTTCAGATTGGAGT+TGG 0.429941 1_4:-1498599 Msa0142560:intron
GAAAGGAACTGCTGGAAGTT+TGG 0.437546 1_4:-1497340 Msa0142560:CDS
ATGCCAACATTAGCAGTTGC+AGG 0.437848 1_4:-1497664 Msa0142560:CDS
GTGACCATTGGTGCAATGCT+TGG 0.438418 1_4:-1500540 Msa0142560:CDS
CTTATGAGTTGGAGTTCTCC+TGG 0.439978 1_4:-1497264 Msa0142560:intron
ATGGCATTTCAACAATCTGT+TGG 0.440440 1_4:-1498572 Msa0142560:CDS
CTGATATCATTGGCAGGAAA+GGG 0.440631 1_4:-1500494 Msa0142560:CDS
TCCAGGCCTTAATGACATCT+TGG 0.442306 1_4:+1496811 None:intergenic
TCCTTTCCTTGTTGAATGAA+AGG 0.450559 1_4:+1502687 None:intergenic
TTAGTCCTTACCAGCCATCT+AGG 0.450744 1_4:+1499307 None:intergenic
TCATTCCTGAATCTCCTAGA+TGG 0.453526 1_4:-1499321 Msa0142560:CDS
CCTTGCATTTGCTTGCTGGT+TGG 0.470385 1_4:-1499352 Msa0142560:CDS
GGGACTTGCAACAACAAATC+AGG 0.471622 1_4:-1499659 Msa0142560:intron
AAGGATGCTTGTAAAGAAGT+TGG 0.476415 1_4:-1502669 Msa0142560:CDS
AACTAGCATTAAGGAAACTA+CGG 0.476801 1_4:-1498926 Msa0142560:CDS
GCAAGCAAATGCAAGGAACT+AGG 0.477564 1_4:+1499359 None:intergenic
TTTGGTTCTTTGGTGACCAT+TGG 0.481812 1_4:-1500552 Msa0142560:CDS
AATGACAATTGAGCAGCATA+AGG 0.485697 1_4:-1502754 Msa0142560:CDS
GAGTTCTTACACACTTGACT+TGG 0.485780 1_4:-1500222 Msa0142560:CDS
AGTGTGGAAAATGGATCCAT+TGG 0.491014 1_4:-1502636 Msa0142560:CDS
TGGTAGCGTGGCTAGGAGCT+TGG 0.495651 1_4:-1497311 Msa0142560:CDS
CATAGCTTATGCATGTATAC+AGG 0.497491 1_4:-1498101 Msa0142560:intron
TCCTGAATCTCCTAGATGGC+TGG 0.497492 1_4:-1499317 Msa0142560:intron
AGCTCCAAGCATTGCACCAA+TGG 0.502584 1_4:+1500536 None:intergenic
CCGATAATTGGACAGTGTCC+AGG 0.503983 1_4:+1496908 None:intergenic
ATAAATGTGAAAGGAACTGC+TGG 0.512457 1_4:-1497348 Msa0142560:CDS
CAAGAACCTTTCATTCAACA+AGG 0.516918 1_4:-1502693 Msa0142560:CDS
ATAGGTTCCATTTACCATGT+TGG 0.521078 1_4:-1497995 Msa0142560:intron
ACTAGCATTAAGGAAACTAC+GGG 0.523883 1_4:-1498925 Msa0142560:CDS
TTAAGTAAATTACAACATCC+AGG 0.527916 1_4:+1496794 None:intergenic
GGTCGAGTTACTGATATCAT+TGG 0.527994 1_4:-1500504 Msa0142560:CDS
ACCTTTCATTCAACAAGGAA+AGG 0.530081 1_4:-1502688 Msa0142560:CDS
GGGCTTTCTTCAGCAAAAGC+TGG 0.531999 1_4:-1498127 Msa0142560:CDS
TCTGTTGGAATTAATGGCAT+AGG 0.532395 1_4:-1498557 Msa0142560:CDS
CTTACACACTTGACTTGGGA+AGG 0.536358 1_4:-1500217 Msa0142560:CDS
TGAGCAGCATAAGGATATTG+AGG 0.536915 1_4:-1502745 Msa0142560:CDS
ACCAAGATGTCATTAAGGCC+TGG 0.537644 1_4:-1496812 Msa0142560:three_prime_UTR
TACAAATAGAATGGTTAAGA+GGG 0.541695 1_4:+1497115 None:intergenic
ACTGATATCATTGGCAGGAA+AGG 0.545701 1_4:-1500495 Msa0142560:CDS
TGGAGACAACTAGCTCTAGC+AGG 0.553589 1_4:-1499491 Msa0142560:intron
CAGCATAAGGATATTGAGGA+TGG 0.555700 1_4:-1502741 Msa0142560:CDS
ATCAAAGCTTATGGCTTGAG+TGG 0.560061 1_4:-1497687 Msa0142560:CDS
CTGTATACATGCATAAGCTA+TGG 0.562149 1_4:+1498102 None:intergenic
CATCAAAATGGCTCCCAACA+TGG 0.563798 1_4:+1497981 None:intergenic
GACCTGATAGCCGCTTGAGT+GGG 0.574441 1_4:+1501480 None:intergenic
ACACCTGCAACTGCTAATGT+TGG 0.582284 1_4:+1497661 None:intergenic
GAGTTACTGATATCATTGGC+AGG 0.583613 1_4:-1500500 Msa0142560:CDS
TGAAACCAAAGGCAAAACAT+TGG 0.583752 1_4:-1497078 Msa0142560:CDS
AGTTCTTACACACTTGACTT+GGG 0.588739 1_4:-1500221 Msa0142560:CDS
AGGAACTGCTGGAAGTTTGG+TGG 0.588904 1_4:-1497337 Msa0142560:CDS
TAATTTCAGGTCTCTGCAAG+TGG 0.589919 1_4:-1497846 Msa0142560:intron
TCCTATGATACAAAATCCTG+TGG 0.593679 1_4:+1500367 None:intergenic
AATTGGAGTTATCTCATATG+TGG 0.595991 1_4:-1500177 Msa0142560:intron
AGACCTGATAGCCGCTTGAG+TGG 0.599979 1_4:+1501479 None:intergenic
ATCAAGCTATAAAGCAGACC+TGG 0.605933 1_4:-1496926 Msa0142560:three_prime_UTR
CCAACCAGCAAGCAAATGCA+AGG 0.623184 1_4:+1499352 None:intergenic
GTGTTTCCGATAAATGTGAA+AGG 0.633214 1_4:-1497357 Msa0142560:CDS
CAGGCTATGAGAATTTCCAC+AGG 0.633545 1_4:-1500383 Msa0142560:CDS
ACCTCAGACATCATCACCCA+AGG 0.633561 1_4:+1497470 None:intergenic
AGTTGGATCAGATAAAAGTG+TGG 0.634652 1_4:-1502652 Msa0142560:CDS
AAAGTAGTCCCTGAAACCAA+AGG 0.635083 1_4:-1497089 Msa0142560:CDS
TTATTCAGCACCCACTCAAG+CGG 0.639807 1_4:-1501490 Msa0142560:CDS
ATGCTTGGAGCTATAACAAG+TGG 0.646646 1_4:-1500525 Msa0142560:CDS
GCTAAGCAGAACCATTCCAA+TGG 0.646752 1_4:+1502620 None:intergenic
TGATATCATTGGCAGGAAAG+GGG 0.647485 1_4:-1500493 Msa0142560:intron
GGAAAATGGATCCATTGGAA+TGG 0.671020 1_4:-1502631 Msa0142560:CDS
TCTTAATCTATCTCTTGCTG+AGG 0.689216 1_4:-1501454 Msa0142560:intron
TCCTTGGGTGATGATGTCTG+AGG 0.717844 1_4:-1497471 Msa0142560:intron
CTAGCATTAAGGAAACTACG+GGG 0.788030 1_4:-1498924 Msa0142560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTTGTAAATTATTAT+TGG - chr1_4:1496983-1497002 Msa0142560:three_prime_UTR 10.0%
!! TTATCAATAAGAATTTAAAT+TGG + chr1_4:1497816-1497835 None:intergenic 10.0%
!! ATAATATAATAATGACAATA+AGG + chr1_4:1498122-1498141 None:intergenic 10.0%
!!! TTTTTTTATGCAATAATTTA+AGG + chr1_4:1498804-1498823 None:intergenic 10.0%
!!! TCTAAGAATAAAATTTTAAA+TGG + chr1_4:1499095-1499114 None:intergenic 10.0%
!!! TAAAATTAATTTTACATGTT+TGG - chr1_4:1499490-1499509 Msa0142560:intron 10.0%
!!! ATTTAAAACTAATGTTATTA+TGG + chr1_4:1500067-1500086 None:intergenic 10.0%
!! ATCAATTAAAAAAAATACTA+TGG + chr1_4:1500701-1500720 None:intergenic 10.0%
!! CATTAAATATATCAAAATAT+TGG + chr1_4:1502574-1502593 None:intergenic 10.0%
!! CAACTTAATTACATTTAAAT+TGG - chr1_4:1497304-1497323 Msa0142560:CDS 15.0%
!!! GATTTTGTTTATTTTTCTTT+TGG - chr1_4:1497500-1497519 Msa0142560:CDS 15.0%
!!! AATAGGTTAAACTTTAAAAT+TGG - chr1_4:1498569-1498588 Msa0142560:CDS 15.0%
!!! TATTTCTACATAATATGTTT+TGG - chr1_4:1498933-1498952 Msa0142560:CDS 15.0%
!!! ATTTCTACATAATATGTTTT+GGG - chr1_4:1498934-1498953 Msa0142560:CDS 15.0%
!! TTTAAATGGAAAGAATATTA+AGG + chr1_4:1499081-1499100 None:intergenic 15.0%
!! GACAAAATAATTTAGTTATA+TGG + chr1_4:1501487-1501506 None:intergenic 15.0%
!!! TATTTGTTACATTGAATAAT+AGG - chr1_4:1501514-1501533 Msa0142560:intron 15.0%
!! GAAATTATACAACAATTATT+TGG + chr1_4:1501668-1501687 None:intergenic 15.0%
!! AATAATTGTTGTATAATTTC+AGG - chr1_4:1501668-1501687 Msa0142560:intron 15.0%
!!! TAATAATTGTATTGTTTTTG+TGG - chr1_4:1502358-1502377 Msa0142560:intron 15.0%
!! ACAACATGATTAAACTTAAA+TGG - chr1_4:1497245-1497264 Msa0142560:intron 20.0%
!!! TTTATTTTTCTTTTGGTGTA+TGG - chr1_4:1497507-1497526 Msa0142560:CDS 20.0%
!! AATATGTCAAAAATAGATGT+AGG + chr1_4:1498477-1498496 None:intergenic 20.0%
!! AGTAAAGTAAGCATTTAAAT+AGG - chr1_4:1498552-1498571 Msa0142560:CDS 20.0%
!! AAAGTACAGAATTTGTAAAT+TGG - chr1_4:1498755-1498774 Msa0142560:CDS 20.0%
!!! TTTCTACATAATATGTTTTG+GGG - chr1_4:1498935-1498954 Msa0142560:CDS 20.0%
!!! TATTCTTAGAAGTAACATTT+TGG - chr1_4:1499105-1499124 Msa0142560:intron 20.0%
!! TCTTACTTGAAGTTAAAATT+TGG - chr1_4:1499534-1499553 Msa0142560:CDS 20.0%
!! TTGGATGTATTTATATATGT+TGG - chr1_4:1499755-1499774 Msa0142560:intron 20.0%
!!! TCATCAATGTCATTTTTAAT+AGG - chr1_4:1500000-1500019 Msa0142560:intron 20.0%
!!! AGTTTTAAATTTTTGCTTGA+AGG - chr1_4:1500077-1500096 Msa0142560:intron 20.0%
!!! TTTGAGATAGCTTATAAAAT+CGG - chr1_4:1500301-1500320 Msa0142560:intron 20.0%
!!! TGATTAAGTTGTTTATATCA+AGG - chr1_4:1500466-1500485 Msa0142560:intron 20.0%
!!! CATTACTCTTATTCTTTTAT+TGG + chr1_4:1500511-1500530 None:intergenic 20.0%
!! GAAATTGTTCTATATAGTTT+AGG + chr1_4:1500918-1500937 None:intergenic 20.0%
!! TATATAGAACAATTTCAGAT+TGG - chr1_4:1500922-1500941 Msa0142560:intron 20.0%
!! ACAAATTTGTCTTTCTTAAA+TGG + chr1_4:1501204-1501223 None:intergenic 20.0%
!!! TTATTATGTTACGACTTTTT+CGG + chr1_4:1501251-1501270 None:intergenic 20.0%
!! AAAAAGTCGTAACATAATAA+AGG - chr1_4:1501251-1501270 Msa0142560:intron 20.0%
!! AAAAGTCGTAACATAATAAA+GGG - chr1_4:1501252-1501271 Msa0142560:intron 20.0%
!! ATCATCTTTATGATTTCAAA+TGG - chr1_4:1501811-1501830 Msa0142560:intron 20.0%
!!! AGAAAATATGAGATATTTTC+AGG + chr1_4:1501986-1502005 None:intergenic 20.0%
!! GAATGAGCAATATATATATA+TGG - chr1_4:1502502-1502521 Msa0142560:intron 20.0%
!! AGCAATATATATATATGGAT+CGG - chr1_4:1502507-1502526 Msa0142560:intron 20.0%
!!! CATTAGTTATCAAATTCTTT+TGG - chr1_4:1502642-1502661 Msa0142560:CDS 20.0%
!! CGATTAAAAACAAGTCATTT+TGG + chr1_4:1497157-1497176 None:intergenic 25.0%
!!! ACTAGGCTGTAAATATTTTT+TGG + chr1_4:1497407-1497426 None:intergenic 25.0%
! CTGTTACAACAGATAAAATA+AGG + chr1_4:1497615-1497634 None:intergenic 25.0%
!! TTATTGATAAAGTGTTCGTA+AGG - chr1_4:1497826-1497845 Msa0142560:CDS 25.0%
!! TCATCATATTTGTTGATAAG+TGG - chr1_4:1498191-1498210 Msa0142560:intron 25.0%
!! CATCATATTTGTTGATAAGT+GGG - chr1_4:1498192-1498211 Msa0142560:intron 25.0%
! AATAACATGTAATGTAGGTT+AGG + chr1_4:1498310-1498329 None:intergenic 25.0%
! CTTTCAATAACATGTAATGT+AGG + chr1_4:1498315-1498334 None:intergenic 25.0%
! AAAAAAAAGTCTAGCTACAT+GGG + chr1_4:1498642-1498661 None:intergenic 25.0%
! TAAAAAAAAGTCTAGCTACA+TGG + chr1_4:1498643-1498662 None:intergenic 25.0%
!! GTTAGAGAGTACAAAATTTA+TGG + chr1_4:1498782-1498801 None:intergenic 25.0%
! TGGATAATTATATGAGAAAC+AGG - chr1_4:1499125-1499144 Msa0142560:intron 25.0%
! TTATTCACTTAGTGAATGTT+TGG - chr1_4:1499441-1499460 Msa0142560:intron 25.0%
! AAAACTGATTATCGCTATAA+GGG + chr1_4:1499653-1499672 None:intergenic 25.0%
! TAAAACTGATTATCGCTATA+AGG + chr1_4:1499654-1499673 None:intergenic 25.0%
!!! CATTTTGCTGTTTTTTTGTT+AGG + chr1_4:1499798-1499817 None:intergenic 25.0%
! AAAAAACAGCAAAATGTATC+AGG - chr1_4:1499802-1499821 Msa0142560:intron 25.0%
! TTGAACAAGTATCATTGAAT+TGG - chr1_4:1499929-1499948 Msa0142560:intron 25.0%
! TAATAGGAAGTCTCATAAAT+TGG - chr1_4:1500016-1500035 Msa0142560:intron 25.0%
!!! ACTCTTGATTTAATTTTGCT+TGG - chr1_4:1500129-1500148 Msa0142560:intron 25.0%
!!! TAGTATGCACAATTTTTTTC+AGG - chr1_4:1500551-1500570 Msa0142560:CDS 25.0%
!! AAATCCAAAAACTTAGTCTT+AGG + chr1_4:1500795-1500814 None:intergenic 25.0%
! AATCTGTTTGATTACTCTAA+AGG - chr1_4:1500890-1500909 Msa0142560:intron 25.0%
! ATCTGTTTGATTACTCTAAA+GGG - chr1_4:1500891-1500910 Msa0142560:intron 25.0%
! AATTCCAATAGTTTAGTCAA+TGG + chr1_4:1501116-1501135 None:intergenic 25.0%
!! TAACATAATAAAGGGTACAT+TGG - chr1_4:1501260-1501279 Msa0142560:intron 25.0%
! TTTCCTGAGAAATGATTAAA+GGG + chr1_4:1501460-1501479 None:intergenic 25.0%
! GTAAGTATTACTGTTATAAG+AGG + chr1_4:1501590-1501609 None:intergenic 25.0%
!! AGCTAAACCATTACAATTTT+TGG + chr1_4:1502104-1502123 None:intergenic 25.0%
!!! AAAAGTACTTTTCTTATTGC+AGG - chr1_4:1502148-1502167 Msa0142560:intron 25.0%
!! CTTTCAATTTTCTTATGAGT+TGG - chr1_4:1502252-1502271 Msa0142560:intron 25.0%
! TACAAATAGAATGGTTAAGA+GGG + chr1_4:1502415-1502434 None:intergenic 25.0%
!! TACTTTTGCTACAAATAGAA+TGG + chr1_4:1502424-1502443 None:intergenic 25.0%
!! AAATTCTTTTGGATCCATTT+AGG - chr1_4:1502653-1502672 Msa0142560:CDS 25.0%
! TTAAGTAAATTACAACATCC+AGG + chr1_4:1502736-1502755 None:intergenic 25.0%
! TCAGATAAAAGTGTGGAAAA+TGG - chr1_4:1496882-1496901 Msa0142560:three_prime_UTR 30.0%
!! GTTTGTGGTTCTTTTTCATT+TGG - chr1_4:1496942-1496961 Msa0142560:three_prime_UTR 30.0%
! ATCCTTCGATTTTCACATAA+AGG - chr1_4:1497049-1497068 Msa0142560:CDS 30.0%
AAACATTTCAACCATGTGAT+TGG + chr1_4:1497201-1497220 None:intergenic 30.0%
AATTGGATAAGTGTTTGCAA+TGG - chr1_4:1497321-1497340 Msa0142560:CDS 30.0%
ATTGGATAAGTGTTTGCAAT+GGG - chr1_4:1497322-1497341 Msa0142560:CDS 30.0%
!!! AGGCTGTAAATATTTTTTGG+AGG + chr1_4:1497404-1497423 None:intergenic 30.0%
!!! ATACAATGTGTTTTGGAAAG+GGG + chr1_4:1497709-1497728 None:intergenic 30.0%
!!! CATACAATGTGTTTTGGAAA+GGG + chr1_4:1497710-1497729 None:intergenic 30.0%
! CTAGTTTCTATTTTGTGATC+AGG - chr1_4:1498010-1498029 Msa0142560:intron 30.0%
! TTTCTATTTTGTGATCAGGT+GGG - chr1_4:1498014-1498033 Msa0142560:intron 30.0%
ATGAGTGTATCAAGAAGAAT+AGG - chr1_4:1498258-1498277 Msa0142560:intron 30.0%
AATACGTGTCATAGATTCAT+AGG + chr1_4:1498595-1498614 None:intergenic 30.0%
ATGAATCTATGACACGTATT+AGG - chr1_4:1498595-1498614 Msa0142560:intron 30.0%
TGTATATCACTATCCATTAC+CGG - chr1_4:1498729-1498748 Msa0142560:CDS 30.0%
!!! ACATAATATGTTTTGGGGAT+TGG - chr1_4:1498940-1498959 Msa0142560:CDS 30.0%
!!! GTTTTCAATGTTTGGTTCTT+TGG - chr1_4:1498965-1498984 Msa0142560:intron 30.0%
! TTTTTCACAGGATATGGAAT+TGG - chr1_4:1499333-1499352 Msa0142560:CDS 30.0%
AATTGGAGTTATCTCATATG+TGG - chr1_4:1499350-1499369 Msa0142560:CDS 30.0%
CATTCATCAAGTGATTTCAA+CGG + chr1_4:1499599-1499618 None:intergenic 30.0%
! TGCATGCAGTTTTACTTAAT+TGG - chr1_4:1499736-1499755 Msa0142560:intron 30.0%
!! GCTATTTCTGCTATATATAC+TGG + chr1_4:1499830-1499849 None:intergenic 30.0%
TTGCAGCTTATGATTGTTAT+TGG - chr1_4:1499976-1499995 Msa0142560:intron 30.0%
!! TTGATTTAATTTTGCTTGGC+TGG - chr1_4:1500133-1500152 Msa0142560:intron 30.0%
TCTGCTTGAAGTAACTTATT+TGG - chr1_4:1500244-1500263 Msa0142560:intron 30.0%
!!! AATTTTTTTCAGGCAAAGGT+TGG - chr1_4:1500561-1500580 Msa0142560:CDS 30.0%
AAGAGTTTCAACTAGCATTA+AGG - chr1_4:1500592-1500611 Msa0142560:intron 30.0%
AACTAGCATTAAGGAAACTA+CGG - chr1_4:1500601-1500620 Msa0142560:intron 30.0%
TGATGAAGCTAATGAAATTC+TGG - chr1_4:1500644-1500663 Msa0142560:intron 30.0%
CTTGATCAGTTAAGAAAGTT+TGG + chr1_4:1500676-1500695 None:intergenic 30.0%
AGCAAAAATGAGTTCAGATA+AGG + chr1_4:1500740-1500759 None:intergenic 30.0%
!! CTGAACTCATTTTTGCTTAT+AGG - chr1_4:1500743-1500762 Msa0142560:intron 30.0%
CAACAATCTGTTGGAATTAA+TGG - chr1_4:1500964-1500983 Msa0142560:intron 30.0%
TTGTAGTAGTATGAAATTCG+TGG - chr1_4:1501152-1501171 Msa0142560:intron 30.0%
GTATGAAATTCGTGGATAAT+TGG - chr1_4:1501160-1501179 Msa0142560:intron 30.0%
ATAAAAAGATGTCCTATAGC+CGG - chr1_4:1501325-1501344 Msa0142560:intron 30.0%
!! TCCTTTATAACTTGATTTGC+AGG - chr1_4:1501379-1501398 Msa0142560:intron 30.0%
!! CCTTTATAACTTGATTTGCA+GGG - chr1_4:1501380-1501399 Msa0142560:intron 30.0%
GTTTCCTGAGAAATGATTAA+AGG + chr1_4:1501461-1501480 None:intergenic 30.0%
! TACATAGCAGCATTTTCAAT+TGG - chr1_4:1502021-1502040 Msa0142560:intron 30.0%
! ACATAGCAGCATTTTCAATT+GGG - chr1_4:1502022-1502041 Msa0142560:intron 30.0%
CACAACACCAAAAATTGTAA+TGG - chr1_4:1502094-1502113 Msa0142560:intron 30.0%
TGATTATGTGCTTAATTACC+AGG + chr1_4:1502284-1502303 None:intergenic 30.0%
!!! ATTGTATTGTTTTTGTGGAC+AGG - chr1_4:1502363-1502382 Msa0142560:intron 30.0%
CTACAAATAGAATGGTTAAG+AGG + chr1_4:1502416-1502435 None:intergenic 30.0%
CAAAACATTGGAAGAAATTC+AGG - chr1_4:1502461-1502480 Msa0142560:intron 30.0%
TGGATCGGTTATATACATTA+TGG - chr1_4:1502522-1502541 Msa0142560:intron 30.0%
TGATAACTAATGCCGATAAT+TGG + chr1_4:1502634-1502653 None:intergenic 30.0%
CAAAGCATAGATAGAATAAC+AGG - chr1_4:1502681-1502700 Msa0142560:CDS 30.0%
TTTGAACCAAGATGTCATTA+AGG - chr1_4:1502710-1502729 Msa0142560:CDS 30.0%
ATTGAGGATGGAGAAACTAA+TGG - chr1_4:1496798-1496817 Msa0142560:three_prime_UTR 35.0%
TTGAGGATGGAGAAACTAAT+GGG - chr1_4:1496799-1496818 Msa0142560:three_prime_UTR 35.0%
CAAGAACCTTTCATTCAACA+AGG - chr1_4:1496834-1496853 Msa0142560:three_prime_UTR 35.0%
ACCTTTCATTCAACAAGGAA+AGG - chr1_4:1496839-1496858 Msa0142560:three_prime_UTR 35.0%
TCCTTTCCTTGTTGAATGAA+AGG + chr1_4:1496843-1496862 None:intergenic 35.0%
AAGGATGCTTGTAAAGAAGT+TGG - chr1_4:1496858-1496877 Msa0142560:three_prime_UTR 35.0%
AGTTGGATCAGATAAAAGTG+TGG - chr1_4:1496875-1496894 Msa0142560:three_prime_UTR 35.0%
GTCCTTTATGTGAAAATCGA+AGG + chr1_4:1497054-1497073 None:intergenic 35.0%
! GACTTTGATAACCTAGAGTT+CGG - chr1_4:1497071-1497090 Msa0142560:CDS 35.0%
TTATCATCTTACCGAACTCT+AGG + chr1_4:1497085-1497104 None:intergenic 35.0%
ATAGGAACTGGTATGTTAGT+GGG + chr1_4:1497434-1497453 None:intergenic 35.0%
!!! TGTTGCTGTTTCGGTATTTT+GGG - chr1_4:1497474-1497493 Msa0142560:CDS 35.0%
!! TCTTTTGGTGTATGGCTTTT+TGG - chr1_4:1497515-1497534 Msa0142560:intron 35.0%
AAAGGACACAGCAGAAAAAA+AGG + chr1_4:1497559-1497578 None:intergenic 35.0%
TACTATACCAAAGCAAACAG+CGG + chr1_4:1497583-1497602 None:intergenic 35.0%
!!! CCATACAATGTGTTTTGGAA+AGG + chr1_4:1497711-1497730 None:intergenic 35.0%
CCTTTCCAAAACACATTGTA+TGG - chr1_4:1497708-1497727 Msa0142560:intron 35.0%
! CTCATCCATACAATGTGTTT+TGG + chr1_4:1497716-1497735 None:intergenic 35.0%
AAACTAACACATGCAAACCA+GGG + chr1_4:1497784-1497803 None:intergenic 35.0%
TAAACTAACACATGCAAACC+AGG + chr1_4:1497785-1497804 None:intergenic 35.0%
! GTTTCTATTTTGTGATCAGG+TGG - chr1_4:1498013-1498032 Msa0142560:intron 35.0%
TCTTAATCTATCTCTTGCTG+AGG - chr1_4:1498073-1498092 Msa0142560:intron 35.0%
GTATATCACTATCCATTACC+GGG - chr1_4:1498730-1498749 Msa0142560:CDS 35.0%
TATATCACTATCCATTACCG+GGG - chr1_4:1498731-1498750 Msa0142560:CDS 35.0%
ACAAATTCTGTACTTTACCC+CGG + chr1_4:1498751-1498770 None:intergenic 35.0%
! GATTGGCAGTTTTCAATGTT+TGG - chr1_4:1498957-1498976 Msa0142560:CDS 35.0%
! TCCACAGGATTTTGTATCAT+AGG - chr1_4:1499159-1499178 Msa0142560:intron 35.0%
TCCTATGATACAAAATCCTG+TGG + chr1_4:1499163-1499182 None:intergenic 35.0%
! CAGGATTTTGTATCATAGGA+TGG - chr1_4:1499163-1499182 Msa0142560:intron 35.0%
AGTTCTTACACACTTGACTT+GGG - chr1_4:1499306-1499325 Msa0142560:intron 35.0%
TTCACTTAGTGAATGTTTGG+AGG - chr1_4:1499444-1499463 Msa0142560:intron 35.0%
TGATTTCAACGGTAAGTTCA+AGG + chr1_4:1499588-1499607 None:intergenic 35.0%
AGCACCAAAAAATCTTAGAG+TGG - chr1_4:1499847-1499866 Msa0142560:intron 35.0%
GCACCAAAAAATCTTAGAGT+GGG - chr1_4:1499848-1499867 Msa0142560:intron 35.0%
!!! AGTCCCACTCTAAGATTTTT+TGG + chr1_4:1499854-1499873 None:intergenic 35.0%
CAACTTAATCAAGCGCTTAT+AGG + chr1_4:1500457-1500476 None:intergenic 35.0%
!!! GCACAATTTTTTTCAGGCAA+AGG - chr1_4:1500557-1500576 Msa0142560:CDS 35.0%
ACTAGCATTAAGGAAACTAC+GGG - chr1_4:1500602-1500621 Msa0142560:intron 35.0%
!! CCAAAAACTTAGTCTTAGGA+AGG + chr1_4:1500791-1500810 None:intergenic 35.0%
! CCTTCCTAAGACTAAGTTTT+TGG - chr1_4:1500788-1500807 Msa0142560:intron 35.0%
GAACAATTTCAGATTGGAGT+TGG - chr1_4:1500928-1500947 Msa0142560:intron 35.0%
TCAGATTGGAGTTGGATTAA+TGG - chr1_4:1500936-1500955 Msa0142560:intron 35.0%
ATGGCATTTCAACAATCTGT+TGG - chr1_4:1500955-1500974 Msa0142560:intron 35.0%
TCTGTTGGAATTAATGGCAT+AGG - chr1_4:1500970-1500989 Msa0142560:intron 35.0%
AAGTGAGATGAAATACATGC+TGG - chr1_4:1501027-1501046 Msa0142560:intron 35.0%
GTCAATGGAGTCTACATTTA+GGG + chr1_4:1501101-1501120 None:intergenic 35.0%
AGTCAATGGAGTCTACATTT+AGG + chr1_4:1501102-1501121 None:intergenic 35.0%
! GACTCCATTGACTAAACTAT+TGG - chr1_4:1501109-1501128 Msa0142560:intron 35.0%
CCCTGCAAATCAAGTTATAA+AGG + chr1_4:1501383-1501402 None:intergenic 35.0%
CTGTATACATGCATAAGCTA+TGG + chr1_4:1501428-1501447 None:intergenic 35.0%
CATAGCTTATGCATGTATAC+AGG - chr1_4:1501426-1501445 Msa0142560:intron 35.0%
GATCCCTTTAATCATTTCTC+AGG - chr1_4:1501454-1501473 Msa0142560:intron 35.0%
ATAGGTTCCATTTACCATGT+TGG - chr1_4:1501532-1501551 Msa0142560:intron 35.0%
TAGGTTCCATTTACCATGTT+GGG - chr1_4:1501533-1501552 Msa0142560:intron 35.0%
GCAAAGGGAATGAGAAATTT+AGG - chr1_4:1501637-1501656 Msa0142560:intron 35.0%
! TTCTTAGGCTGCTTTATAAC+CGG - chr1_4:1501708-1501727 Msa0142560:intron 35.0%
TAGACTTGCCTTGAAAAAGA+AGG + chr1_4:1501739-1501758 None:intergenic 35.0%
TGGATCAGAATCAAAGCTTA+TGG - chr1_4:1501831-1501850 Msa0142560:intron 35.0%
GTGTTTCCGATAAATGTGAA+AGG - chr1_4:1502170-1502189 Msa0142560:intron 35.0%
GCAGTTCCTTTCACATTTAT+CGG + chr1_4:1502179-1502198 None:intergenic 35.0%
ATAAATGTGAAAGGAACTGC+TGG - chr1_4:1502179-1502198 Msa0142560:intron 35.0%
!! GGTACTATGTTTTTGTATGC+TGG - chr1_4:1502384-1502403 Msa0142560:intron 35.0%
!! ATGTTTTGCCTTTGGTTTCA+GGG + chr1_4:1502449-1502468 None:intergenic 35.0%
!! AATGTTTTGCCTTTGGTTTC+AGG + chr1_4:1502450-1502469 None:intergenic 35.0%
TGAAACCAAAGGCAAAACAT+TGG - chr1_4:1502449-1502468 Msa0142560:intron 35.0%
! TTCTTCCAATGTTTTGCCTT+TGG + chr1_4:1502457-1502476 None:intergenic 35.0%
TATGCTTTGTCTGTCCTAAA+TGG + chr1_4:1502670-1502689 None:intergenic 35.0%
TGAGCAGCATAAGGATATTG+AGG - chr1_4:1496782-1496801 Msa0142560:three_prime_UTR 40.0%
CAGCATAAGGATATTGAGGA+TGG - chr1_4:1496786-1496805 Msa0142560:three_prime_UTR 40.0%
AGTGTGGAAAATGGATCCAT+TGG - chr1_4:1496891-1496910 Msa0142560:three_prime_UTR 40.0%
GGAAAATGGATCCATTGGAA+TGG - chr1_4:1496896-1496915 Msa0142560:three_prime_UTR 40.0%
!! AGCACATTTGTTGCTGTTTG+TGG - chr1_4:1496927-1496946 Msa0142560:three_prime_UTR 40.0%
TTCAACCATGTGATTGGACT+CGG + chr1_4:1497195-1497214 None:intergenic 40.0%
TAGGAACTGGTATGTTAGTG+GGG + chr1_4:1497433-1497452 None:intergenic 40.0%
CATAGGAACTGGTATGTTAG+TGG + chr1_4:1497435-1497454 None:intergenic 40.0%
AAAGCATGCTACAACAGCAT+AGG + chr1_4:1497452-1497471 None:intergenic 40.0%
!! ATGCTTTGCTGTTGCTGTTT+CGG - chr1_4:1497465-1497484 Msa0142560:intron 40.0%
!!! CTGTTGCTGTTTCGGTATTT+TGG - chr1_4:1497473-1497492 Msa0142560:CDS 40.0%
! TTTGGTTTCTTTCCTGTTGC+TGG - chr1_4:1497533-1497552 Msa0142560:intron 40.0%
GCTGTTTGCTTTGGTATAGT+AGG - chr1_4:1497582-1497601 Msa0142560:intron 40.0%
TTTGCTTTGGTATAGTAGGC+TGG - chr1_4:1497586-1497605 Msa0142560:intron 40.0%
TTGCTTTGGTATAGTAGGCT+GGG - chr1_4:1497587-1497606 Msa0142560:intron 40.0%
! GATGAGCCTCATTTTACTTC+CGG - chr1_4:1497730-1497749 Msa0142560:intron 40.0%
!! TTTGGTTCTTTGGTGACCAT+TGG - chr1_4:1498975-1498994 Msa0142560:intron 40.0%
ATGCTTGGAGCTATAACAAG+TGG - chr1_4:1499002-1499021 Msa0142560:intron 40.0%
GGTCGAGTTACTGATATCAT+TGG - chr1_4:1499023-1499042 Msa0142560:intron 40.0%
GAGTTACTGATATCATTGGC+AGG - chr1_4:1499027-1499046 Msa0142560:intron 40.0%
ACTGATATCATTGGCAGGAA+AGG - chr1_4:1499032-1499051 Msa0142560:intron 40.0%
CTGATATCATTGGCAGGAAA+GGG - chr1_4:1499033-1499052 Msa0142560:intron 40.0%
TGATATCATTGGCAGGAAAG+GGG - chr1_4:1499034-1499053 Msa0142560:intron 40.0%
GAGTTCTTACACACTTGACT+TGG - chr1_4:1499305-1499324 Msa0142560:intron 40.0%
! GGAAGGTTTTTCACAGGATA+TGG - chr1_4:1499327-1499346 Msa0142560:CDS 40.0%
TTGCAACAACAAATCAGGTG+AGG - chr1_4:1499873-1499892 Msa0142560:intron 40.0%
TCATTCCTGAATCTCCTAGA+TGG - chr1_4:1500206-1500225 Msa0142560:CDS 40.0%
CATATAAGCTGTAGAACTCG+TGG + chr1_4:1500363-1500382 None:intergenic 40.0%
CACGAGTTCTACAGCTTATA+TGG - chr1_4:1500361-1500380 Msa0142560:CDS 40.0%
CTAGCATTAAGGAAACTACG+GGG - chr1_4:1500603-1500622 Msa0142560:intron 40.0%
! GATGAAATACATGCTGGTTG+TGG - chr1_4:1501033-1501052 Msa0142560:intron 40.0%
ATGGAGTCTACATTTAGGGA+CGG + chr1_4:1501097-1501116 None:intergenic 40.0%
TACTATCTCATTGTCCCTAC+CGG + chr1_4:1501347-1501366 None:intergenic 40.0%
TCCAGACTTGTCCATCAAAA+TGG + chr1_4:1501561-1501580 None:intergenic 40.0%
TCAACTACATCTGCATGCAA+AGG - chr1_4:1501621-1501640 Msa0142560:intron 40.0%
CAACTACATCTGCATGCAAA+GGG - chr1_4:1501622-1501641 Msa0142560:intron 40.0%
! TAATTTCAGGTCTCTGCAAG+TGG - chr1_4:1501681-1501700 Msa0142560:intron 40.0%
TCTGCAAGTGGAACATTCTT+AGG - chr1_4:1501693-1501712 Msa0142560:intron 40.0%
CTTGAAAAAGAAGGCAACTC+CGG + chr1_4:1501730-1501749 None:intergenic 40.0%
ATCAAAGCTTATGGCTTGAG+TGG - chr1_4:1501840-1501859 Msa0142560:intron 40.0%
ATTAGCAGTTGCAGGTGTAT+TGG - chr1_4:1501871-1501890 Msa0142560:intron 40.0%
AGGAGGAGATTCAAGAATTG+AGG + chr1_4:1501908-1501927 None:intergenic 40.0%
ACTGTATCAACCATGCAAAG+AGG + chr1_4:1501928-1501947 None:intergenic 40.0%
! AGCAGCATTTTCAATTGGGT+TGG - chr1_4:1502026-1502045 Msa0142560:intron 40.0%
! GCAGCATTTTCAATTGGGTT+GGG - chr1_4:1502027-1502046 Msa0142560:intron 40.0%
AAAGTAGTCCCTGAAACCAA+AGG - chr1_4:1502438-1502457 Msa0142560:intron 40.0%
ATCAAGCTATAAAGCAGACC+TGG - chr1_4:1502601-1502620 Msa0142560:CDS 40.0%
GCTAAGCAGAACCATTCCAA+TGG + chr1_4:1496910-1496929 None:intergenic 45.0%
GATAAGTGTTTGCAATGGGC+CGG - chr1_4:1497326-1497345 Msa0142560:CDS 45.0%
!! TTTTTGGAGGCCCATACCTT+GGG + chr1_4:1497391-1497410 None:intergenic 45.0%
!!! TTTTTTGGAGGCCCATACCT+TGG + chr1_4:1497392-1497411 None:intergenic 45.0%
AGGAACTGGTATGTTAGTGG+GGG + chr1_4:1497432-1497451 None:intergenic 45.0%
TGCTACAACAGCATAGGAAC+TGG + chr1_4:1497446-1497465 None:intergenic 45.0%
!!! TGCTGTTTCGGTATTTTGGG+AGG - chr1_4:1497477-1497496 Msa0142560:CDS 45.0%
!! GCTGTTTCGGTATTTTGGGA+GGG - chr1_4:1497478-1497497 Msa0142560:CDS 45.0%
CAGAAAAAAAGGCCAGCAAC+AGG + chr1_4:1497548-1497567 None:intergenic 45.0%
! TTTGCCATTTAGTGCACTCC+TGG - chr1_4:1497635-1497654 Msa0142560:intron 45.0%
! TATTTCAAGTGCCAAGCACC+AGG + chr1_4:1497656-1497675 None:intergenic 45.0%
TTCCAACGAATTTGGAGGCT+CGG + chr1_4:1497758-1497777 None:intergenic 45.0%
AGCCTCCAAATTCGTTGGAA+CGG - chr1_4:1497758-1497777 Msa0142560:intron 45.0%
TTATTCAGCACCCACTCAAG+CGG - chr1_4:1498037-1498056 Msa0142560:intron 45.0%
ATAGGCTAGACAGACTCACA+TGG - chr1_4:1498276-1498295 Msa0142560:intron 45.0%
TCTGTACTTTACCCCGGTAA+TGG + chr1_4:1498745-1498764 None:intergenic 45.0%
CAGGCTATGAGAATTTCCAC+AGG - chr1_4:1499144-1499163 Msa0142560:intron 45.0%
GCTAGCTGTCTTCTTCTCTA+AGG - chr1_4:1499185-1499204 Msa0142560:intron 45.0%
!! CTTACACACTTGACTTGGGA+AGG - chr1_4:1499310-1499329 Msa0142560:intron 45.0%
! GACTTGGGAAGGTTTTTCAC+AGG - chr1_4:1499321-1499340 Msa0142560:CDS 45.0%
GGGACTTGCAACAACAAATC+AGG - chr1_4:1499868-1499887 Msa0142560:intron 45.0%
! TGCTTGGCTGGAACTTTTGA+AGG - chr1_4:1500145-1500164 Msa0142560:intron 45.0%
GCAAGCAAATGCAAGGAACT+AGG + chr1_4:1500171-1500190 None:intergenic 45.0%
AGTTCCTTGCATTTGCTTGC+TGG - chr1_4:1500171-1500190 Msa0142560:intron 45.0%
AATCTCCTAGATGGCTGGTA+AGG - chr1_4:1500215-1500234 Msa0142560:CDS 45.0%
TTAGTCCTTACCAGCCATCT+AGG + chr1_4:1500223-1500242 None:intergenic 45.0%
AAAGATGTCCTATAGCCGGT+AGG - chr1_4:1501329-1501348 Msa0142560:intron 45.0%
AAGATGTCCTATAGCCGGTA+GGG - chr1_4:1501330-1501349 Msa0142560:intron 45.0%
ATGGCTCCCAACATGGTAAA+TGG + chr1_4:1501542-1501561 None:intergenic 45.0%
CATCAAAATGGCTCCCAACA+TGG + chr1_4:1501549-1501568 None:intergenic 45.0%
!! CATGTTGGGAGCCATTTTGA+TGG - chr1_4:1501547-1501566 Msa0142560:intron 45.0%
!! GCCATTTTGATGGACAAGTC+TGG - chr1_4:1501557-1501576 Msa0142560:intron 45.0%
!! CGGAGTTGCCTTCTTTTTCA+AGG - chr1_4:1501728-1501747 Msa0142560:intron 45.0%
ATGCCAACATTAGCAGTTGC+AGG - chr1_4:1501863-1501882 Msa0142560:intron 45.0%
ACACCTGCAACTGCTAATGT+TGG + chr1_4:1501869-1501888 None:intergenic 45.0%
TGAATCTCCTCCTCTTTGCA+TGG - chr1_4:1501915-1501934 Msa0142560:intron 45.0%
GTATCAACCATGCAAAGAGG+AGG + chr1_4:1501925-1501944 None:intergenic 45.0%
GAAAGGAACTGCTGGAAGTT+TGG - chr1_4:1502187-1502206 Msa0142560:intron 45.0%
!! TGCTGGAAGTTTGGTGGTTT+TGG - chr1_4:1502196-1502215 Msa0142560:intron 45.0%
! CTTATGAGTTGGAGTTCTCC+TGG - chr1_4:1502263-1502282 Msa0142560:intron 45.0%
GACATTGCTTCTGTCTCTCT+TGG - chr1_4:1502544-1502563 Msa0142560:intron 45.0%
CCTGGACACTGTCCAATTAT+CGG - chr1_4:1502619-1502638 Msa0142560:CDS 45.0%
ACCAAGATGTCATTAAGGCC+TGG - chr1_4:1502715-1502734 Msa0142560:CDS 45.0%
TCCAGGCCTTAATGACATCT+TGG + chr1_4:1502719-1502738 None:intergenic 45.0%
!!! TTTTATTTTATAGAAAAAAA+AGG + chr1_4:1498167-1498186 None:intergenic 5.0%
!! ATTAAATATATCAAAATATT+GGG + chr1_4:1502573-1502592 None:intergenic 5.0%
AGCATCCGAGTCCAATCACA+TGG - chr1_4:1497187-1497206 Msa0142560:intron 50.0%
!! TTTTGGAGGCCCATACCTTG+GGG + chr1_4:1497390-1497409 None:intergenic 50.0%
!! GTATGTTAGTGGGGGGTACT+AGG + chr1_4:1497424-1497443 None:intergenic 50.0%
GGAACTGGTATGTTAGTGGG+GGG + chr1_4:1497431-1497450 None:intergenic 50.0%
TCCTTTGCCGCTGTTTGCTT+TGG - chr1_4:1497573-1497592 Msa0142560:intron 50.0%
ACCAAAGCAAACAGCGGCAA+AGG + chr1_4:1497577-1497596 None:intergenic 50.0%
! AGCACCAGGAGTGCACTAAA+TGG + chr1_4:1497642-1497661 None:intergenic 50.0%
TTTAGTGCACTCCTGGTGCT+TGG - chr1_4:1497642-1497661 Msa0142560:intron 50.0%
!! TCGGTGCCGGAAGTAAAATG+AGG + chr1_4:1497739-1497758 None:intergenic 50.0%
GTGACCATTGGTGCAATGCT+TGG - chr1_4:1498987-1499006 Msa0142560:intron 50.0%
! AGCTCCAAGCATTGCACCAA+TGG + chr1_4:1498994-1499013 None:intergenic 50.0%
!! TGGAGACAACTAGCTCTAGC+AGG - chr1_4:1500036-1500055 Msa0142560:intron 50.0%
CCAACCAGCAAGCAAATGCA+AGG + chr1_4:1500178-1500197 None:intergenic 50.0%
! CCTTGCATTTGCTTGCTGGT+TGG - chr1_4:1500175-1500194 Msa0142560:intron 50.0%
TCCTGAATCTCCTAGATGGC+TGG - chr1_4:1500210-1500229 Msa0142560:CDS 50.0%
ACCAGCCATCTAGGAGATTC+AGG + chr1_4:1500214-1500233 None:intergenic 50.0%
CAGAGCGCACGTATTTGCTT+TGG + chr1_4:1500821-1500840 None:intergenic 50.0%
! GCTGAGACTTTTGTAGCAGC+TGG - chr1_4:1501003-1501022 Msa0142560:intron 50.0%
! TCATTGTCCCTACCGGCTAT+AGG + chr1_4:1501340-1501359 None:intergenic 50.0%
GGGCTTTCTTCAGCAAAAGC+TGG - chr1_4:1501400-1501419 Msa0142560:intron 50.0%
!! TTGGGTTGGGATCAGTTCCT+TGG - chr1_4:1502040-1502059 Msa0142560:intron 50.0%
! TGGGTTGGGATCAGTTCCTT+GGG - chr1_4:1502041-1502060 Msa0142560:intron 50.0%
! TCCTTGGGTGATGATGTCTG+AGG - chr1_4:1502056-1502075 Msa0142560:intron 50.0%
ACCTCAGACATCATCACCCA+AGG + chr1_4:1502060-1502079 None:intergenic 50.0%
AGGAACTGCTGGAAGTTTGG+TGG - chr1_4:1502190-1502209 Msa0142560:intron 50.0%
!!! GTTTGGTGGTTTTGGTAGCG+TGG - chr1_4:1502204-1502223 Msa0142560:intron 50.0%
CCGATAATTGGACAGTGTCC+AGG + chr1_4:1502622-1502641 None:intergenic 50.0%
CACCGAGCCTCCAAATTCGT+TGG - chr1_4:1497753-1497772 Msa0142560:intron 55.0%
GGCCGTTCCAACGAATTTGG+AGG + chr1_4:1497763-1497782 None:intergenic 55.0%
CAGGGCCGTTCCAACGAATT+TGG + chr1_4:1497766-1497785 None:intergenic 55.0%
CAAATTCGTTGGAACGGCCC+TGG - chr1_4:1497764-1497783 Msa0142560:intron 55.0%
GACCTGATAGCCGCTTGAGT+GGG + chr1_4:1498050-1498069 None:intergenic 55.0%
AGACCTGATAGCCGCTTGAG+TGG + chr1_4:1498051-1498070 None:intergenic 55.0%
!!! GTGGTTTTGGTAGCGTGGCT+AGG - chr1_4:1502209-1502228 Msa0142560:intron 55.0%
TTTGCAATGGGCCGGACCCT+GGG - chr1_4:1497334-1497353 Msa0142560:CDS 60.0%
GCAAGCAGCGCTATAGCACC+AGG - chr1_4:1497361-1497380 Msa0142560:intron 60.0%
TATAGCACCAGGCCTCCCCA+AGG - chr1_4:1497372-1497391 Msa0142560:intron 60.0%
ACCAGGCCTCCCCAAGGTAT+GGG - chr1_4:1497378-1497397 Msa0142560:intron 60.0%
!! CGAATTTGGAGGCTCGGTGC+CGG + chr1_4:1497752-1497771 None:intergenic 60.0%
CACCCACTCAAGCGGCTATC+AGG - chr1_4:1498045-1498064 Msa0142560:intron 60.0%
! TGGTAGCGTGGCTAGGAGCT+TGG - chr1_4:1502216-1502235 Msa0142560:intron 60.0%
GTTTGCAATGGGCCGGACCC+TGG - chr1_4:1497333-1497352 Msa0142560:CDS 65.0%
TTGCAATGGGCCGGACCCTG+GGG - chr1_4:1497335-1497354 Msa0142560:CDS 65.0%
CACCAGGCCTCCCCAAGGTA+TGG - chr1_4:1497377-1497396 Msa0142560:intron 65.0%
TGGAGGCCCATACCTTGGGG+AGG + chr1_4:1497387-1497406 None:intergenic 65.0%
TGCAATGGGCCGGACCCTGG+GGG - chr1_4:1497336-1497355 Msa0142560:CDS 70.0%
TGCTTGCACCCCCCAGGGTC+CGG + chr1_4:1497348-1497367 None:intergenic 70.0%
AGCGCTGCTTGCACCCCCCA+GGG + chr1_4:1497353-1497372 None:intergenic 70.0%
TAGCGCTGCTTGCACCCCCC+AGG + chr1_4:1497354-1497373 None:intergenic 70.0%
GCCCATACCTTGGGGAGGCC+TGG + chr1_4:1497382-1497401 None:intergenic 70.0%
GCAATGGGCCGGACCCTGGG+GGG - chr1_4:1497337-1497356 Msa0142560:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1496774 1502775 1496774 ID=Msa0142560;Name=Msa0142560
chr1_4 mRNA 1496774 1502775 1496774 ID=Msa0142560-mRNA-1;Parent=Msa0142560;Name=Msa0142560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.94|0.83|1|1|1|18|275|485
chr1_4 exon 1496774 1497164 1496774 ID=Msa0142560-mRNA-1:exon:566;Parent=Msa0142560-mRNA-1
chr1_4 exon 1497265 1497379 1497265 ID=Msa0142560-mRNA-1:exon:565;Parent=Msa0142560-mRNA-1
chr1_4 exon 1497472 1497531 1497472 ID=Msa0142560-mRNA-1:exon:564;Parent=Msa0142560-mRNA-1
chr1_4 exon 1497657 1497710 1497657 ID=Msa0142560-mRNA-1:exon:563;Parent=Msa0142560-mRNA-1
chr1_4 exon 1497800 1497859 1497800 ID=Msa0142560-mRNA-1:exon:562;Parent=Msa0142560-mRNA-1
chr1_4 exon 1497951 1498013 1497951 ID=Msa0142560-mRNA-1:exon:561;Parent=Msa0142560-mRNA-1
chr1_4 exon 1498102 1498148 1498102 ID=Msa0142560-mRNA-1:exon:560;Parent=Msa0142560-mRNA-1
chr1_4 exon 1498525 1498609 1498525 ID=Msa0142560-mRNA-1:exon:559;Parent=Msa0142560-mRNA-1
chr1_4 exon 1498704 1498784 1498704 ID=Msa0142560-mRNA-1:exon:558;Parent=Msa0142560-mRNA-1
chr1_4 exon 1498884 1498976 1498884 ID=Msa0142560-mRNA-1:exon:557;Parent=Msa0142560-mRNA-1
chr1_4 exon 1499318 1499382 1499318 ID=Msa0142560-mRNA-1:exon:556;Parent=Msa0142560-mRNA-1
chr1_4 exon 1499492 1499567 1499492 ID=Msa0142560-mRNA-1:exon:555;Parent=Msa0142560-mRNA-1
chr1_4 exon 1499660 1499725 1499660 ID=Msa0142560-mRNA-1:exon:554;Parent=Msa0142560-mRNA-1
chr1_4 exon 1500178 1500243 1500178 ID=Msa0142560-mRNA-1:exon:553;Parent=Msa0142560-mRNA-1
chr1_4 exon 1500343 1500402 1500343 ID=Msa0142560-mRNA-1:exon:552;Parent=Msa0142560-mRNA-1
chr1_4 exon 1500494 1500583 1500494 ID=Msa0142560-mRNA-1:exon:551;Parent=Msa0142560-mRNA-1
chr1_4 exon 1501455 1501517 1501455 ID=Msa0142560-mRNA-1:exon:550;Parent=Msa0142560-mRNA-1
chr1_4 exon 1502578 1502775 1502578 ID=Msa0142560-mRNA-1:exon:549;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1502578 1502775 1502578 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1501455 1501517 1501455 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1500494 1500583 1500494 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1500343 1500402 1500343 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1500178 1500243 1500178 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1499660 1499725 1499660 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1499492 1499567 1499492 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1499318 1499382 1499318 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1498884 1498976 1498884 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1498704 1498784 1498704 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1498525 1498609 1498525 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1498102 1498148 1498102 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1497951 1498013 1497951 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1497800 1497859 1497800 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1497657 1497710 1497657 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1497472 1497531 1497472 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1497265 1497379 1497265 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 CDS 1497049 1497164 1497049 ID=Msa0142560-mRNA-1:cds;Parent=Msa0142560-mRNA-1
chr1_4 three_prime_UTR 1496774 1497048 1496774 ID=Msa0142560-mRNA-1:three_prime_utr;Parent=Msa0142560-mRNA-1
Gene Sequence

>Msa0142560

ATGACAATTGAGCAGCATAAGGATATTGAGGATGGAGAAACTAATGGGTTTCAGTATTTGCAAGAACCTTTCATTCAACAAGGAAAGGATGCTTGTAAAGAAGTTGGATCAGATAAAAGTGTGGAAAATGGATCCATTGGAATGGTTCTGCTTAGCACATTTGTTGCTGTTTGTGGTTCTTTTTCATTTGGAACTTGTGTGGGTTATTCAGCACCCACTCAAGCGGCTATCAGGTCTGATCTTAATCTATCTCTTGCTGAGTTTTCAATGTTTGGTTCTTTGGTGACCATTGGTGCAATGCTTGGAGCTATAACAAGTGGTCGAGTTACTGATATCATTGGCAGGAAAGGGGCTATGAGAATTTCCACAGGATTTTGTATCATAGGATGGCTAGCTGTCTTCTTCTCTAAGAGTTCTTACACACTTGACTTGGGAAGGTTTTTCACAGGATATGGAATTGGAGTTATCTCATATGTGGTTCCAGTATATATAGCAGAAATAGCACCAAAAAATCTTAGAGTGGGACTTGCAACAACAAATCAGCTTATGATTGTTATTGGATCATCAATGTCATTTTTAATAGGAAGTCTCATAAATTGGAGACAACTAGCTCTAGCAGGCCTAGTTCCTTGCATTTGCTTGCTGGTTGGTTTGTGCTTCATTCCTGAATCTCCTAGATGGCTGGCAAAGGTTGGTCGTGAAAAAGAGTTTCAACTAGCATTAAGGAAACTACGGGGTAAAGACGTTGATATTTCTGATGAAGCTAATGAAATTCTGGATAATATTGAAACTCTTCAAAGCCTTCCTAAGACTAAGTTTTTGGATTTGTTCCAAAGCAAATACGTGCGCTCTGTAATTATTGGAGTTGGATTAATGGCATTTCAACAATCTGTTGGAATTAATGGCATAGGATTCTATACAGCTGAGACTTTTGTAGCAGCTGGGCTTTCTTCAGCAAAAGCTGGTACCATAGCTTATGCATGTATACAGGTTCCATTTACCATGTTGGGAGCCATTTTGATGGACAAGTCTGGAAGAAAACCTCTTATAACAGTCTCTGCAAGTGGAACATTCTTAGGCTGCTTTATAACCGGAGTTGCCTTCTTTTTCAAGAATCAAAGCTTATGGCTTGAGTGGATGCCAACATTAGCAGTTGCAGGTGTATTGATCTACATAGCAGCATTTTCAATTGGGTTGGGATCAGTTCCTTGGGTGATGATGTCTGAGGTGTTTCCGATAAATGTGAAAGGAACTGCTGGAAGTTTGGTGGTTTTGGTAGCGTGGCTAGGAGCTTGGATAGTTTCATATACTTTCAATTTTCTTATGAGTTGGAGTTCTCCTGGTACTATGTTTTTGTATGCTGGATGTTCCCTCTTAACCATTCTATTTGTAGCAAAAGTAGTCCCTGAAACCAAAGGCAAAACATTGGAAGAAATTCAGGCTTGCATTAGTTCTTAG
Protein sequence

>Msa0142560

MTIEQHKDIEDGETNGFQYLQEPFIQQGKDACKEVGSDKSVENGSIGMVLLSTFVAVCGSFSFGTCVGYSAPTQAAIRSDLNLSLAEFSMFGSLVTIGAMLGAITSGRVTDIIGRKGAMRISTGFCIIGWLAVFFSKSSYTLDLGRFFTGYGIGVISYVVPVYIAEIAPKNLRVGLATTNQLMIVIGSSMSFLIGSLINWRQLALAGLVPCICLLVGLCFIPESPRWLAKVGREKEFQLALRKLRGKDVDISDEANEILDNIETLQSLPKTKFLDLFQSKYVRSVIIGVGLMAFQQSVGINGIGFYTAETFVAAGLSSAKAGTIAYACIQVPFTMLGAILMDKSGRKPLITVSASGTFLGCFITGVAFFFKNQSLWLEWMPTLAVAGVLIYIAAFSIGLGSVPWVMMSEVFPINVKGTAGSLVVLVAWLGAWIVSYTFNFLMSWSSPGTMFLYAGCSLLTILFVAKVVPETKGKTLEEIQACISS*