Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197110 | XP_013462901.1 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197110 | sp|Q8RWU7|PUX4_ARATH | 67.419 | 310 | 78 | 7 | 1 | 294 | 1 | 303 | 2.87e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197110 | I3T3U9 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015670 | Msa0197110 | -0.802743 | 4.854594e-49 | -8.615850e-47 |
| Msa0039250 | Msa0197110 | -0.804469 | 2.127913e-49 | -8.615850e-47 |
| Msa0133720 | Msa0197110 | -0.802109 | 6.556568e-49 | -8.615850e-47 |
| Msa0197110 | Msa0276750 | 0.988819 | 1.548749e-175 | -8.615850e-47 |
| Msa0197110 | Msa0316690 | 0.998339 | 2.859161e-262 | -8.615850e-47 |
| Msa0197110 | Msa1252850 | 0.807513 | 4.871769e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197110 | MtrunA17_Chr2g0289211 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Msa0197110 | MtrunA17_Chr5g0439401 | 62.081 | 298 | 98 | 7 | 7 | 293 | 128 | 421 | 1.14e-118 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197110 | AT4G04210.1 | 67.419 | 310 | 78 | 7 | 1 | 294 | 1 | 303 | 2.91e-130 | 372 |
| Msa0197110 | AT4G22150.1 | 64.379 | 306 | 93 | 6 | 1 | 294 | 1 | 302 | 3.26e-124 | 357 |
| Msa0197110 | AT4G15410.1 | 56.757 | 296 | 115 | 5 | 10 | 294 | 128 | 421 | 1.51e-104 | 311 |
| Msa0197110 | AT3G21660.2 | 44.206 | 233 | 104 | 7 | 67 | 294 | 227 | 438 | 7.70e-51 | 173 |
| Msa0197110 | AT3G21660.2 | 35.079 | 191 | 73 | 10 | 3 | 192 | 84 | 224 | 2.05e-13 | 70.5 |
| Msa0197110 | AT3G21660.1 | 40.773 | 233 | 109 | 6 | 67 | 294 | 227 | 435 | 8.79e-43 | 152 |
| Msa0197110 | AT3G21660.1 | 35.079 | 191 | 73 | 10 | 3 | 192 | 84 | 224 | 1.84e-13 | 70.5 |
Find 106 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGACTGGATTTGATATT+TGG | 0.088572 | 2_1:+14781680 | Msa0197110:three_prime_UTR |
| AATGAAGCTTGGCTCCTTTC+CGG | 0.204643 | 2_1:-14781061 | None:intergenic |
| GTCTCATCAGCCAGAACCTT+TGG | 0.275592 | 2_1:-14781364 | None:intergenic |
| AAGGAGCCAAGCTTCATTTC+AGG | 0.277223 | 2_1:+14781066 | Msa0197110:CDS |
| TCTGCAGGCTCAAGCTCCTT+GGG | 0.307863 | 2_1:-14780600 | None:intergenic |
| TCTCATCAGCCAGAACCTTT+GGG | 0.313071 | 2_1:-14781363 | None:intergenic |
| CCTCAAAGGTCCGTCATTTA+CGG | 0.320498 | 2_1:-14780170 | None:intergenic |
| TTCATTGATGCGTCTAGACC+TGG | 0.350120 | 2_1:+14781301 | Msa0197110:CDS |
| TGACGGACCTTTGAGGAGAT+TGG | 0.354213 | 2_1:+14780177 | Msa0197110:CDS |
| ATCTGCAGGCTCAAGCTCCT+TGG | 0.360805 | 2_1:-14780601 | None:intergenic |
| TCTGTTGGGTGGCTTAGCTT+TGG | 0.363956 | 2_1:+14781588 | Msa0197110:three_prime_UTR |
| AAGGCCTCTGGATCAGCTTC+AGG | 0.375933 | 2_1:+14780018 | Msa0197110:CDS |
| AATGACTGGATTTGATATTT+GGG | 0.392542 | 2_1:+14781681 | Msa0197110:three_prime_UTR |
| GTGCATAAATTACAAATGTA+AGG | 0.396174 | 2_1:-14781731 | None:intergenic |
| CTATTTGCATTAGATTCTGT+TGG | 0.397237 | 2_1:+14781573 | Msa0197110:three_prime_UTR |
| TTCAATCATCACCACACAAT+TGG | 0.397764 | 2_1:+14781265 | Msa0197110:CDS |
| GACTATAGAGCAAGCAGGAT+TGG | 0.411788 | 2_1:+14781390 | Msa0197110:CDS |
| CAGCTCCAAGTTGCCTAGCT+TGG | 0.415672 | 2_1:-14779991 | None:intergenic |
| TATTTGCATTAGATTCTGTT+GGG | 0.415990 | 2_1:+14781574 | Msa0197110:three_prime_UTR |
| TGGAACTGGCAGGTTACTCT+CGG | 0.422568 | 2_1:+14780066 | Msa0197110:intron |
| TTCAACCAAGCTAGGCAACT+TGG | 0.433347 | 2_1:+14779986 | Msa0197110:CDS |
| GTCGAGGCAACATTTGTCTC+AGG | 0.447502 | 2_1:-14781130 | None:intergenic |
| GTAAAGCTTGTTGACCTTGG+AGG | 0.463131 | 2_1:-14780043 | None:intergenic |
| GAAGGGGTTGGAGCTGAGGT+GGG | 0.464702 | 2_1:-14781160 | None:intergenic |
| AGAAGGGGTTGGAGCTGAGG+TGG | 0.467204 | 2_1:-14781161 | None:intergenic |
| AACTATCAACTTCAGATGAT+GGG | 0.469653 | 2_1:+14781334 | Msa0197110:CDS |
| AGTTCTCATTCCTTCTTATG+AGG | 0.470919 | 2_1:-14780647 | None:intergenic |
| AAACTATCAACTTCAGATGA+TGG | 0.472909 | 2_1:+14781333 | Msa0197110:CDS |
| CTGAGTTGTATTGAGGTTGA+TGG | 0.475950 | 2_1:-14781211 | None:intergenic |
| CCGTAAATGACGGACCTTTG+AGG | 0.482107 | 2_1:+14780170 | Msa0197110:CDS |
| TCAACCACGAGACCAGTAGA+AGG | 0.486622 | 2_1:-14781178 | None:intergenic |
| TGGAGCTGTAGAAAGGCCTC+TGG | 0.487117 | 2_1:+14780006 | Msa0197110:CDS |
| ATAAGATATTCCCTCAAAGC+AGG | 0.487982 | 2_1:-14781522 | None:intergenic |
| TCAGCTCCAACCCCTTCTAC+TGG | 0.490883 | 2_1:+14781166 | Msa0197110:CDS |
| CCAAGCTTCATTTCAGGGAG+TGG | 0.491290 | 2_1:+14781072 | Msa0197110:CDS |
| AGGAGCTTGAGCCTGCAGAT+AGG | 0.491570 | 2_1:+14780604 | Msa0197110:CDS |
| CTCCAGTGGAATGCTTGTCC+AGG | 0.494655 | 2_1:+14779931 | Msa0197110:intron |
| TGGAAGCAGTTCGGCTTCGA+TGG | 0.495383 | 2_1:+14781105 | Msa0197110:CDS |
| CAGGGAGTGGGAAGAACACT+TGG | 0.496077 | 2_1:+14781085 | Msa0197110:CDS |
| AAGAACACTTGGAAGCAGTT+CGG | 0.502793 | 2_1:+14781096 | Msa0197110:CDS |
| GGAACTGGCAGGTTACTCTC+GGG | 0.505832 | 2_1:+14780067 | Msa0197110:intron |
| TAGCGACTCCGATGGTCCTC+AGG | 0.506781 | 2_1:+14777487 | Msa0197110:CDS |
| AAGGCATCAAGCAGTCGAGC+TGG | 0.506928 | 2_1:+14777416 | Msa0197110:CDS |
| AGGACCATCGGAGTCGCTAT+CGG | 0.507164 | 2_1:-14777483 | None:intergenic |
| AGCTAGCCTGAGTTGTATTG+AGG | 0.511959 | 2_1:-14781218 | None:intergenic |
| TCATTGATGCGTCTAGACCT+GGG | 0.516883 | 2_1:+14781302 | Msa0197110:CDS |
| CTTGTCCAGGACCCTTCAAA+AGG | 0.517282 | 2_1:+14779944 | Msa0197110:CDS |
| AGGAGCCAAGCTTCATTTCA+GGG | 0.517684 | 2_1:+14781067 | Msa0197110:CDS |
| TGCCGTGTCTTCGTAATGAC+TGG | 0.519825 | 2_1:+14781667 | Msa0197110:three_prime_UTR |
| CCACTCCCTGAAATGAAGCT+TGG | 0.521336 | 2_1:-14781072 | None:intergenic |
| TGTTGAGAGTTAGAAGCAGT+TGG | 0.522165 | 2_1:-14780100 | None:intergenic |
| ACTGAAATCAATGGCGTCAC+GGG | 0.524471 | 2_1:+14777385 | Msa0197110:exon |
| TAAATGTAAACCTCATAAGA+AGG | 0.531231 | 2_1:+14780637 | Msa0197110:CDS |
| CAAGCTTCATTTCAGGGAGT+GGG | 0.535505 | 2_1:+14781073 | Msa0197110:CDS |
| GGCAACTTGGAGCTGTAGAA+AGG | 0.539850 | 2_1:+14779999 | Msa0197110:CDS |
| GGGGTTGGAGCTGAGGTGGG+AGG | 0.540439 | 2_1:-14781157 | None:intergenic |
| AGCAGATGGTCGGTTGAGAT+CGG | 0.544156 | 2_1:-14777456 | None:intergenic |
| ACAGCTGACCTCCTATCTGC+AGG | 0.544508 | 2_1:-14780615 | None:intergenic |
| TTGCATTAGATTCTGTTGGG+TGG | 0.551802 | 2_1:+14781577 | Msa0197110:three_prime_UTR |
| CTCATCAGCCAGAACCTTTG+GGG | 0.554088 | 2_1:-14781362 | None:intergenic |
| TACTGAAATCAATGGCGTCA+CGG | 0.555373 | 2_1:+14777384 | Msa0197110:exon |
| AGGTCTAGACGCATCAATGA+AGG | 0.558576 | 2_1:-14781299 | None:intergenic |
| TAAGATATTCCCTCAAAGCA+GGG | 0.561422 | 2_1:-14781521 | None:intergenic |
| GTAATACTCCTGAGGACCAT+CGG | 0.566845 | 2_1:-14777495 | None:intergenic |
| AGTAGAAGGGGTTGGAGCTG+AGG | 0.570531 | 2_1:-14781164 | None:intergenic |
| ATACAACTCAGGCTAGCTGA+TGG | 0.570857 | 2_1:+14781223 | Msa0197110:CDS |
| CATTGATGCGTCTAGACCTG+GGG | 0.576257 | 2_1:+14781303 | Msa0197110:CDS |
| CTGCAGGCTCAAGCTCCTTG+GGG | 0.579209 | 2_1:-14780599 | None:intergenic |
| CAACCACGAGACCAGTAGAA+GGG | 0.582379 | 2_1:-14781177 | None:intergenic |
| TGAGGTGGGAGGCGTTGTCG+AGG | 0.582939 | 2_1:-14781146 | None:intergenic |
| AGCTTGAGCCTGCAGATAGG+AGG | 0.585887 | 2_1:+14780607 | Msa0197110:CDS |
| TATCGGAATCAGCAGATGGT+CGG | 0.590803 | 2_1:-14777466 | None:intergenic |
| AACCCCTTCTACTGGTCTCG+TGG | 0.592080 | 2_1:+14781174 | Msa0197110:CDS |
| GGCGTCACGGGACAACAAGA+AGG | 0.599291 | 2_1:+14777397 | Msa0197110:CDS |
| ACGAGACCAGTAGAAGGGGT+TGG | 0.600210 | 2_1:-14781172 | None:intergenic |
| CCCTTCAAAAGGAAATGATG+TGG | 0.602839 | 2_1:+14779955 | Msa0197110:CDS |
| GGATCATCCAATCTCCTCAA+AGG | 0.604327 | 2_1:-14780184 | None:intergenic |
| TGCGAGAGTACTGAAATCAA+TGG | 0.604789 | 2_1:+14777376 | Msa0197110:exon |
| TCATCAGCCAGAACCTTTGG+GGG | 0.616171 | 2_1:-14781361 | None:intergenic |
| ATGTTGTGAACAACAGACTC+AGG | 0.616871 | 2_1:-14780124 | None:intergenic |
| ATTGAAATGTGATATCAAGC+GGG | 0.616914 | 2_1:-14781248 | None:intergenic |
| ATATTCCCTCAAAGCAGGGG+GGG | 0.619503 | 2_1:-14781517 | None:intergenic |
| CATCAACCTCAATACAACTC+AGG | 0.620565 | 2_1:+14781212 | Msa0197110:CDS |
| ATCAGCTTCAGGAACCTCCA+AGG | 0.625174 | 2_1:+14780029 | Msa0197110:CDS |
| GAACTGGCAGGTTACTCTCG+GGG | 0.628067 | 2_1:+14780068 | Msa0197110:intron |
| ACTATCAACTTCAGATGATG+GGG | 0.628203 | 2_1:+14781335 | Msa0197110:CDS |
| CATAGCAACAGGAACCGGAA+AGG | 0.630097 | 2_1:+14781047 | Msa0197110:intron |
| GGTTCCTGAAGCTGATCCAG+AGG | 0.630507 | 2_1:-14780022 | None:intergenic |
| TCGCTATCGGAATCAGCAGA+TGG | 0.630862 | 2_1:-14777470 | None:intergenic |
| AATGGTTTCACCGTAAATGA+CGG | 0.634127 | 2_1:+14780160 | Msa0197110:CDS |
| CGCGGATGTCGCCAATTGTG+TGG | 0.638335 | 2_1:-14781276 | None:intergenic |
| AGATATTCCCTCAAAGCAGG+GGG | 0.639026 | 2_1:-14781519 | None:intergenic |
| ACACAGACTATAGAGCAAGC+AGG | 0.640891 | 2_1:+14781385 | Msa0197110:CDS |
| AAGATATTCCCTCAAAGCAG+GGG | 0.642574 | 2_1:-14781520 | None:intergenic |
| AACTGGCAGGTTACTCTCGG+GGG | 0.645658 | 2_1:+14780069 | Msa0197110:intron |
| ATCCAGTCATTACGAAGACA+CGG | 0.646040 | 2_1:-14781669 | None:intergenic |
| AACCACGAGACCAGTAGAAG+GGG | 0.651448 | 2_1:-14781176 | None:intergenic |
| GATTCCGATAGCGACTCCGA+TGG | 0.657927 | 2_1:+14777479 | Msa0197110:CDS |
| GATTGAAATGTGATATCAAG+CGG | 0.665002 | 2_1:-14781249 | None:intergenic |
| TAGACGCATCAATGAAGGCG+CGG | 0.675628 | 2_1:-14781294 | None:intergenic |
| CCGCCGGTGTAATACTCCTG+AGG | 0.683141 | 2_1:-14777503 | None:intergenic |
| CCTCAGGAGTATTACACCGG+CGG | 0.689148 | 2_1:+14777503 | Msa0197110:CDS |
| GGTCCTCAGGAGTATTACAC+CGG | 0.689346 | 2_1:+14777500 | Msa0197110:CDS |
| CATCAGCCAGAACCTTTGGG+GGG | 0.692287 | 2_1:-14781360 | None:intergenic |
| ATTGATGCGTCTAGACCTGG+GGG | 0.697222 | 2_1:+14781304 | Msa0197110:CDS |
| GATATTCCCTCAAAGCAGGG+GGG | 0.707190 | 2_1:-14781518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATAGTTAATAATTTTTT+TGG | + | chr2_1:14777727-14777746 | Msa0197110:intron | 10.0% |
| !!! | ATTTTTCTCAAAATTATTTT+TGG | + | chr2_1:14778332-14778351 | Msa0197110:intron | 10.0% |
| !!! | TTTTTCTCAAAATTATTTTT+GGG | + | chr2_1:14778333-14778352 | Msa0197110:intron | 10.0% |
| !!! | ATTGTTTAAAATTTTAACTA+GGG | - | chr2_1:14779581-14779600 | None:intergenic | 10.0% |
| !!! | TATTGTTTAAAATTTTAACT+AGG | - | chr2_1:14779582-14779601 | None:intergenic | 10.0% |
| !!! | TTTATTGATTTTTAGACTTA+TGG | + | chr2_1:14777606-14777625 | Msa0197110:intron | 15.0% |
| !!! | TTATTGATTTTTAGACTTAT+GGG | + | chr2_1:14777607-14777626 | Msa0197110:intron | 15.0% |
| !! | TCATGTTCTTAAATTATTAT+CGG | + | chr2_1:14778044-14778063 | Msa0197110:intron | 15.0% |
| !!! | AGTTTTTTTAATCTATATTC+AGG | + | chr2_1:14780328-14780347 | Msa0197110:intron | 15.0% |
| !!! | GTTTTTTTAATCTATATTCA+GGG | + | chr2_1:14780329-14780348 | Msa0197110:intron | 15.0% |
| !! | AATGATAAACAAAAACAAAT+AGG | + | chr2_1:14781491-14781510 | Msa0197110:three_prime_UTR | 15.0% |
| !! | AAAATCAATAAAACACTGAA+AGG | - | chr2_1:14777598-14777617 | None:intergenic | 20.0% |
| !! | ACTAATATAATTGCAACTAT+AGG | + | chr2_1:14778114-14778133 | Msa0197110:intron | 20.0% |
| !!! | TCGCTAATAAGTTTTAAAAA+GGG | - | chr2_1:14778180-14778199 | None:intergenic | 20.0% |
| !!! | ATCGCTAATAAGTTTTAAAA+AGG | - | chr2_1:14778181-14778200 | None:intergenic | 20.0% |
| !! | GATTACAATTGAAACTTATT+AGG | + | chr2_1:14778198-14778217 | Msa0197110:intron | 20.0% |
| !!! | AACAAAGTTTTGTTAAATGA+CGG | - | chr2_1:14778771-14778790 | None:intergenic | 20.0% |
| !! | AATAAAGAGAAAACAAGAAA+AGG | + | chr2_1:14779208-14779227 | Msa0197110:intron | 20.0% |
| !! | AACAATGGTAATTAAATGAA+TGG | - | chr2_1:14779524-14779543 | None:intergenic | 20.0% |
| !!! | TTAAAATTTTAACTAGGGAA+TGG | - | chr2_1:14779576-14779595 | None:intergenic | 20.0% |
| !!! | TGATTTTGTACATTAAAAGT+TGG | + | chr2_1:14779757-14779776 | Msa0197110:intron | 20.0% |
| !! | TTCTTATTCTGTAAATAGTT+TGG | + | chr2_1:14780243-14780262 | Msa0197110:intron | 20.0% |
| !!! | TGTAAGTAAATTTTCTCTAA+TGG | + | chr2_1:14780402-14780421 | Msa0197110:intron | 20.0% |
| !!! | ACTTGTTATTTATTGTACAT+TGG | - | chr2_1:14781020-14781039 | None:intergenic | 20.0% |
| !!! | AAGTTGAGTTTTTTACAAGA+TGG | - | chr2_1:14777568-14777587 | None:intergenic | 25.0% |
| !! | AAACCAATTTTGCAAAACAA+TGG | - | chr2_1:14777827-14777846 | None:intergenic | 25.0% |
| !! | TTTGCAAAATTGGTTTCTAT+TGG | + | chr2_1:14777831-14777850 | Msa0197110:intron | 25.0% |
| ! | AAGATAAGAGTAAGGTAAAA+GGG | - | chr2_1:14777889-14777908 | None:intergenic | 25.0% |
| ! | AAGAGTAACATGATTTCTAT+AGG | - | chr2_1:14778150-14778169 | None:intergenic | 25.0% |
| !!! | TTCTCAAAATTATTTTTGGG+TGG | + | chr2_1:14778336-14778355 | Msa0197110:intron | 25.0% |
| !!! | AGAGTTTTAAGGTAATATAG+TGG | + | chr2_1:14778678-14778697 | Msa0197110:intron | 25.0% |
| ! | TTGACAATTAGGCAATTAAA+TGG | + | chr2_1:14778925-14778944 | Msa0197110:intron | 25.0% |
| ! | AAATCAAACACTTTCAGTAA+AGG | - | chr2_1:14779743-14779762 | None:intergenic | 25.0% |
| ! | CTAAACATCGACATATTTAT+CGG | - | chr2_1:14779858-14779877 | None:intergenic | 25.0% |
| !!! | TTGTTCACAACATTGTTTTT+TGG | + | chr2_1:14780134-14780153 | Msa0197110:CDS | 25.0% |
| !!! | AACATTGTTTTTTGGAGTAA+TGG | + | chr2_1:14780142-14780161 | Msa0197110:CDS | 25.0% |
| ! | TTATTCTGTAAATAGTTTGG+AGG | + | chr2_1:14780246-14780265 | Msa0197110:intron | 25.0% |
| ! | TTTGGAGGTTAGAAAATATT+TGG | + | chr2_1:14780261-14780280 | Msa0197110:intron | 25.0% |
| ! | TTAAAAAAACTCGATCTTCT+AGG | - | chr2_1:14780319-14780338 | None:intergenic | 25.0% |
| !!! | TTATTTTGTAAGTTCACTGT+AGG | + | chr2_1:14780430-14780449 | Msa0197110:intron | 25.0% |
| ! | TAAATGTAAACCTCATAAGA+AGG | + | chr2_1:14780637-14780656 | Msa0197110:CDS | 25.0% |
| ! | GTTTGTATTTGTCCAATTTA+GGG | + | chr2_1:14780700-14780719 | Msa0197110:intron | 25.0% |
| !!! | TTTAACATAAGCTGTTTTCA+CGG | - | chr2_1:14780850-14780869 | None:intergenic | 25.0% |
| ! | ATTAAGATGTTTATCCAAAC+AGG | + | chr2_1:14780945-14780964 | Msa0197110:intron | 25.0% |
| ! | TTAAGATGTTTATCCAAACA+GGG | + | chr2_1:14780946-14780965 | Msa0197110:intron | 25.0% |
| ! | TATTTGCATTAGATTCTGTT+GGG | + | chr2_1:14781574-14781593 | Msa0197110:three_prime_UTR | 25.0% |
| ! | TAATGACTGGATTTGATATT+TGG | + | chr2_1:14781680-14781699 | Msa0197110:three_prime_UTR | 25.0% |
| ! | AATGACTGGATTTGATATTT+GGG | + | chr2_1:14781681-14781700 | Msa0197110:three_prime_UTR | 25.0% |
| ! | GTATTATACTTTTCGTGAGA+AGG | + | chr2_1:14777687-14777706 | Msa0197110:intron | 30.0% |
| TATGTGTGTGTGTAATTTGA+TGG | + | chr2_1:14777863-14777882 | Msa0197110:intron | 30.0% | |
| CAAGATAAGAGTAAGGTAAA+AGG | - | chr2_1:14777890-14777909 | None:intergenic | 30.0% | |
| ! | CTTTTACCTTACTCTTATCT+TGG | + | chr2_1:14777888-14777907 | Msa0197110:intron | 30.0% |
| ATTGAACCAAGATAAGAGTA+AGG | - | chr2_1:14777897-14777916 | None:intergenic | 30.0% | |
| TAACCACTATTCTATATTCG+AGG | - | chr2_1:14778264-14778283 | None:intergenic | 30.0% | |
| !! | TTTAAGGTAATATAGTGGAC+TGG | + | chr2_1:14778683-14778702 | Msa0197110:intron | 30.0% |
| !! | TTAAGGTAATATAGTGGACT+GGG | + | chr2_1:14778684-14778703 | Msa0197110:intron | 30.0% |
| ! | ATACACTATTTTGCCAATAG+CGG | + | chr2_1:14778950-14778969 | Msa0197110:intron | 30.0% |
| !!! | TTTTCTAGTTCTGGTGTTTT+TGG | + | chr2_1:14779134-14779153 | Msa0197110:intron | 30.0% |
| AAAGAGAAAACAAGAAAAGG+AGG | + | chr2_1:14779211-14779230 | Msa0197110:intron | 30.0% | |
| !!! | TTCCCTATTTTTATGCCATT+TGG | + | chr2_1:14779323-14779342 | Msa0197110:intron | 30.0% |
| !!! | TCCCTATTTTTATGCCATTT+GGG | + | chr2_1:14779324-14779343 | Msa0197110:intron | 30.0% |
| ACCCAAATGGCATAAAAATA+GGG | - | chr2_1:14779328-14779347 | None:intergenic | 30.0% | |
| GATGTACTTATTTAATCGAC+AGG | - | chr2_1:14779802-14779821 | None:intergenic | 30.0% | |
| !! | AGAAAATATTTGGAGTATCG+AGG | + | chr2_1:14780271-14780290 | Msa0197110:intron | 30.0% |
| AATCTATATTCAGGGAACAA+TGG | + | chr2_1:14780337-14780356 | Msa0197110:intron | 30.0% | |
| ! | TGGCTTTTATAATCTTGACA+AGG | + | chr2_1:14780453-14780472 | Msa0197110:intron | 30.0% |
| GGGAAAATATACTTTCTTCA+TGG | + | chr2_1:14780504-14780523 | Msa0197110:intron | 30.0% | |
| TTTCTTCATGGTTATATCGA+TGG | + | chr2_1:14780516-14780535 | Msa0197110:intron | 30.0% | |
| AATGCTCTGCATTCAAAAAT+AGG | - | chr2_1:14780565-14780584 | None:intergenic | 30.0% | |
| !! | AGTTTTCTGTTTGAGTTCTT+TGG | + | chr2_1:14780678-14780697 | Msa0197110:intron | 30.0% |
| GGTTTGTATTTGTCCAATTT+AGG | + | chr2_1:14780699-14780718 | Msa0197110:intron | 30.0% | |
| AATCCAAACAAACCCTAAAT+TGG | - | chr2_1:14780715-14780734 | None:intergenic | 30.0% | |
| TTTCATAGTAAAACCCTGTT+TGG | - | chr2_1:14780962-14780981 | None:intergenic | 30.0% | |
| ATGTGTGATAACAACAACAA+AGG | - | chr2_1:14780995-14781014 | None:intergenic | 30.0% | |
| ATTGAAATGTGATATCAAGC+GGG | - | chr2_1:14781251-14781270 | None:intergenic | 30.0% | |
| GATTGAAATGTGATATCAAG+CGG | - | chr2_1:14781252-14781271 | None:intergenic | 30.0% | |
| AAACTATCAACTTCAGATGA+TGG | + | chr2_1:14781333-14781352 | Msa0197110:CDS | 30.0% | |
| AACTATCAACTTCAGATGAT+GGG | + | chr2_1:14781334-14781353 | Msa0197110:CDS | 30.0% | |
| CTATTTGCATTAGATTCTGT+TGG | + | chr2_1:14781573-14781592 | Msa0197110:three_prime_UTR | 30.0% | |
| ! | TTATACTTTTCGTGAGAAGG+AGG | + | chr2_1:14777690-14777709 | Msa0197110:intron | 35.0% |
| ! | TGAGAGGTGTGAAACTTATT+AGG | + | chr2_1:14777798-14777817 | Msa0197110:intron | 35.0% |
| ! | GAGAGGTGTGAAACTTATTA+GGG | + | chr2_1:14777799-14777818 | Msa0197110:intron | 35.0% |
| !! | GCACCATTGTTTTGCAAAAT+TGG | + | chr2_1:14777821-14777840 | Msa0197110:intron | 35.0% |
| ATGAAATTCAGACTCAGACA+CGG | - | chr2_1:14778086-14778105 | None:intergenic | 35.0% | |
| CTTCCTCGAATATAGAATAG+TGG | + | chr2_1:14778258-14778277 | Msa0197110:intron | 35.0% | |
| AAGCACTCGAAACTTATCTT+AGG | + | chr2_1:14778359-14778378 | Msa0197110:intron | 35.0% | |
| AGCACTCGAAACTTATCTTA+GGG | + | chr2_1:14778360-14778379 | Msa0197110:intron | 35.0% | |
| ! | ATCTTCAAAACTAGTTTGCG+TGG | + | chr2_1:14778419-14778438 | Msa0197110:intron | 35.0% |
| ! | TCTTCAAAACTAGTTTGCGT+GGG | + | chr2_1:14778420-14778439 | Msa0197110:intron | 35.0% |
| !! | AAGTTGAGCTAGTTCTGAAT+AGG | - | chr2_1:14778456-14778475 | None:intergenic | 35.0% |
| !! | TAGCTCAACTTGTTAAAGAG+TGG | + | chr2_1:14778465-14778484 | Msa0197110:intron | 35.0% |
| !! | AGCTCAACTTGTTAAAGAGT+GGG | + | chr2_1:14778466-14778485 | Msa0197110:intron | 35.0% |
| AACACATTAAAGACGTCGAA+AGG | - | chr2_1:14778612-14778631 | None:intergenic | 35.0% | |
| CCTTAAAACTCTCCAACAAT+GGG | - | chr2_1:14778670-14778689 | None:intergenic | 35.0% | |
| ACCTTAAAACTCTCCAACAA+TGG | - | chr2_1:14778671-14778690 | None:intergenic | 35.0% | |
| CTGGGTAATAATGTTAATCG+TGG | + | chr2_1:14778702-14778721 | Msa0197110:intron | 35.0% | |
| AGTGTATCCTAGAACTATAG+AGG | + | chr2_1:14778801-14778820 | Msa0197110:intron | 35.0% | |
| GAACAAACCTCTATAGTTCT+AGG | - | chr2_1:14778811-14778830 | None:intergenic | 35.0% | |
| TAATTGTCAATTGTCAAGCC+AGG | - | chr2_1:14778915-14778934 | None:intergenic | 35.0% | |
| TGGCTTGACAATTGACAATT+AGG | + | chr2_1:14778914-14778933 | Msa0197110:intron | 35.0% | |
| !! | ACCACATTTGACTTGATTTG+TGG | - | chr2_1:14779065-14779084 | None:intergenic | 35.0% |
| GGTCAGAAAACATAAGATTG+TGG | - | chr2_1:14779160-14779179 | None:intergenic | 35.0% | |
| ! | ATCTTATGTTTTCTGACCTG+TGG | + | chr2_1:14779162-14779181 | Msa0197110:intron | 35.0% |
| ATTCAACACCAAGTAACACA+AGG | - | chr2_1:14779272-14779291 | None:intergenic | 35.0% | |
| CACCCAAATGGCATAAAAAT+AGG | - | chr2_1:14779329-14779348 | None:intergenic | 35.0% | |
| AGATTGTAGTGAAACCTCTT+GGG | - | chr2_1:14779374-14779393 | None:intergenic | 35.0% | |
| AAGATTGTAGTGAAACCTCT+TGG | - | chr2_1:14779375-14779394 | None:intergenic | 35.0% | |
| ! | TACACCTCTCTATTTGAGAT+TGG | + | chr2_1:14779462-14779481 | Msa0197110:intron | 35.0% |
| ACATCAGAAACATATCTTCC+TGG | - | chr2_1:14779498-14779517 | None:intergenic | 35.0% | |
| CCATTGTTACAGAGTAACAA+TGG | - | chr2_1:14779539-14779558 | None:intergenic | 35.0% | |
| CCATTGTTACTCTGTAACAA+TGG | + | chr2_1:14779536-14779555 | Msa0197110:intron | 35.0% | |
| TACTCTGTAACAATGGAAAC+AGG | + | chr2_1:14779543-14779562 | Msa0197110:intron | 35.0% | |
| AAGAAAGGAGTGAAATGGAA+TGG | - | chr2_1:14779636-14779655 | None:intergenic | 35.0% | |
| ! | CCACATCATTTCCTTTTGAA+GGG | - | chr2_1:14779958-14779977 | None:intergenic | 35.0% |
| ! | TCCACATCATTTCCTTTTGA+AGG | - | chr2_1:14779959-14779978 | None:intergenic | 35.0% |
| ! | ATGCAATTTTCAACCAAGCT+AGG | + | chr2_1:14779978-14779997 | Msa0197110:CDS | 35.0% |
| AATGGTTTCACCGTAAATGA+CGG | + | chr2_1:14780160-14780179 | Msa0197110:CDS | 35.0% | |
| ATACAGTACCTCCAAAAATG+AGG | - | chr2_1:14780218-14780237 | None:intergenic | 35.0% | |
| AAAAAACTCGATCTTCTAGG+AGG | - | chr2_1:14780316-14780335 | None:intergenic | 35.0% | |
| ! | TTTTGTAAGTTCACTGTAGG+TGG | + | chr2_1:14780433-14780452 | Msa0197110:intron | 35.0% |
| ! | ATTTTCCCACACACATATCA+GGG | - | chr2_1:14780492-14780511 | None:intergenic | 35.0% |
| ! | TATTTTCCCACACACATATC+AGG | - | chr2_1:14780493-14780512 | None:intergenic | 35.0% |
| AGTTCTCATTCCTTCTTATG+AGG | - | chr2_1:14780650-14780669 | None:intergenic | 35.0% | |
| ! | TGTCCAATTTAGGGTTTGTT+TGG | + | chr2_1:14780709-14780728 | Msa0197110:intron | 35.0% |
| AATAAGCTGAAAACAGCTTG+TGG | - | chr2_1:14780817-14780836 | None:intergenic | 35.0% | |
| TGATAACAACAACAAAGGAC+TGG | - | chr2_1:14780990-14781009 | None:intergenic | 35.0% | |
| AAGTGCTTTATCATAGCAAC+AGG | + | chr2_1:14781036-14781055 | Msa0197110:intron | 35.0% | |
| TTTATCATAGCAACAGGAAC+CGG | + | chr2_1:14781042-14781061 | Msa0197110:intron | 35.0% | |
| TTCAATCATCACCACACAAT+TGG | + | chr2_1:14781265-14781284 | Msa0197110:CDS | 35.0% | |
| ACTATCAACTTCAGATGATG+GGG | + | chr2_1:14781335-14781354 | Msa0197110:CDS | 35.0% | |
| TAAGATATTCCCTCAAAGCA+GGG | - | chr2_1:14781524-14781543 | None:intergenic | 35.0% | |
| ATAAGATATTCCCTCAAAGC+AGG | - | chr2_1:14781525-14781544 | None:intergenic | 35.0% | |
| !! | TGCGAGAGTACTGAAATCAA+TGG | + | chr2_1:14777376-14777395 | Msa0197110:exon | 40.0% |
| TACTGAAATCAATGGCGTCA+CGG | + | chr2_1:14777384-14777403 | Msa0197110:exon | 40.0% | |
| !!! | ATTGAACCTTTTTTCACCGC+CGG | - | chr2_1:14777522-14777541 | None:intergenic | 40.0% |
| TTGAAACAGTGAAGTGAGTG+AGG | + | chr2_1:14777756-14777775 | Msa0197110:intron | 40.0% | |
| AAGTGAGTGAGGTGTGAAAT+TGG | + | chr2_1:14777767-14777786 | Msa0197110:intron | 40.0% | |
| AGTGAGTGAGGTGTGAAATT+GGG | + | chr2_1:14777768-14777787 | Msa0197110:intron | 40.0% | |
| GCACTCGAAACTTATCTTAG+GGG | + | chr2_1:14778361-14778380 | Msa0197110:intron | 40.0% | |
| !! | TCAACTTGTTAAAGAGTGGG+AGG | + | chr2_1:14778469-14778488 | Msa0197110:intron | 40.0% |
| ! | GTCTAATGGCAATGCTCTTT+TGG | + | chr2_1:14778576-14778595 | Msa0197110:intron | 40.0% |
| AAAGCAAGTCAACCCATTGT+TGG | + | chr2_1:14778655-14778674 | Msa0197110:intron | 40.0% | |
| ! | CCCATTGTTGGAGAGTTTTA+AGG | + | chr2_1:14778667-14778686 | Msa0197110:intron | 40.0% |
| GCTATATCGCTATAGCATAG+CGG | - | chr2_1:14778839-14778858 | None:intergenic | 40.0% | |
| ! | TGCTATTTGACAACACTGCT+GGG | + | chr2_1:14778867-14778886 | Msa0197110:intron | 40.0% |
| GGGTAATTACTCCAATTAGC+TGG | + | chr2_1:14778887-14778906 | Msa0197110:intron | 40.0% | |
| ! | TTTTGCTGGAGCAGTTATTG+CGG | + | chr2_1:14779039-14779058 | Msa0197110:intron | 40.0% |
| GCCACAAATCAAGTCAAATG+TGG | + | chr2_1:14779061-14779080 | Msa0197110:intron | 40.0% | |
| ! | CAGTCACCACAGACATTTTA+CGG | + | chr2_1:14779088-14779107 | Msa0197110:intron | 40.0% |
| ! | CTTCTATGTTACTTCTCCAC+AGG | - | chr2_1:14779181-14779200 | None:intergenic | 40.0% |
| GTGGAGAAGTAACATAGAAG+AGG | + | chr2_1:14779181-14779200 | Msa0197110:intron | 40.0% | |
| GTAACACAAGGTTGCAGTAA+TGG | - | chr2_1:14779260-14779279 | None:intergenic | 40.0% | |
| ! | TACTGCAACCTTGTGTTACT+TGG | + | chr2_1:14779261-14779280 | Msa0197110:intron | 40.0% |
| !! | GTGTTACTTGGTGTTGAATG+TGG | + | chr2_1:14779273-14779292 | Msa0197110:intron | 40.0% |
| !! | TTTTATGCCATTTGGGTGAG+AGG | + | chr2_1:14779331-14779350 | Msa0197110:intron | 40.0% |
| ! | TTTATGCCATTTGGGTGAGA+GGG | + | chr2_1:14779332-14779351 | Msa0197110:intron | 40.0% |
| TGAAACCTCTTGGGCTTAAA+AGG | - | chr2_1:14779365-14779384 | None:intergenic | 40.0% | |
| ! | TCTCAAATAGAGAGGTGTAG+CGG | - | chr2_1:14779461-14779480 | None:intergenic | 40.0% |
| CTTGCCAATCTCAAATAGAG+AGG | - | chr2_1:14779469-14779488 | None:intergenic | 40.0% | |
| ! | CTCTCTATTTGAGATTGGCA+AGG | + | chr2_1:14779467-14779486 | Msa0197110:intron | 40.0% |
| ! | TGGTTTGGAATCAGATAGAG+CGG | - | chr2_1:14779616-14779635 | None:intergenic | 40.0% |
| AGGAGTGAAATGGAATGGTT+TGG | - | chr2_1:14779631-14779650 | None:intergenic | 40.0% | |
| ACGTCAAGAAAGGAGTGAAA+TGG | - | chr2_1:14779641-14779660 | None:intergenic | 40.0% | |
| CTATGTTTGCACGTCAAGAA+AGG | - | chr2_1:14779651-14779670 | None:intergenic | 40.0% | |
| GTGCAAACATAGCATCTTGA+TGG | + | chr2_1:14779659-14779678 | Msa0197110:intron | 40.0% | |
| AAAGTGACTTCTCCATTCAC+AGG | - | chr2_1:14779715-14779734 | None:intergenic | 40.0% | |
| CAATTGTACATTGTCTCCAG+TGG | + | chr2_1:14779917-14779936 | Msa0197110:intron | 40.0% | |
| CCCTTCAAAAGGAAATGATG+TGG | + | chr2_1:14779955-14779974 | Msa0197110:CDS | 40.0% | |
| TCAACAAGCTTTACTGGAAC+TGG | + | chr2_1:14780052-14780071 | Msa0197110:intron | 40.0% | |
| TGTTGAGAGTTAGAAGCAGT+TGG | - | chr2_1:14780103-14780122 | None:intergenic | 40.0% | |
| ATGTTGTGAACAACAGACTC+AGG | - | chr2_1:14780127-14780146 | None:intergenic | 40.0% | |
| ! | TCCTGCAAATGCCTCATTTT+TGG | + | chr2_1:14780204-14780223 | Msa0197110:CDS | 40.0% |
| ! | TCCAAAAATGAGGCATTTGC+AGG | - | chr2_1:14780208-14780227 | None:intergenic | 40.0% |
| !! | TGCAAATGCCTCATTTTTGG+AGG | + | chr2_1:14780207-14780226 | Msa0197110:CDS | 40.0% |
| !! | CTTCTAGGAGGAGTCATTTT+GGG | - | chr2_1:14780304-14780323 | None:intergenic | 40.0% |
| !! | TCTTCTAGGAGGAGTCATTT+TGG | - | chr2_1:14780305-14780324 | None:intergenic | 40.0% |
| TAAAAAGTCTGAATGCCCCA+AGG | + | chr2_1:14780584-14780603 | Msa0197110:CDS | 40.0% | |
| AGACTGCTTAAGAGAGCTTA+TGG | + | chr2_1:14780773-14780792 | Msa0197110:intron | 40.0% | |
| AAGAACACTTGGAAGCAGTT+CGG | + | chr2_1:14781096-14781115 | Msa0197110:CDS | 40.0% | |
| CTGAGTTGTATTGAGGTTGA+TGG | - | chr2_1:14781214-14781233 | None:intergenic | 40.0% | |
| CATCAACCTCAATACAACTC+AGG | + | chr2_1:14781212-14781231 | Msa0197110:CDS | 40.0% | |
| AAGATATTCCCTCAAAGCAG+GGG | - | chr2_1:14781523-14781542 | None:intergenic | 40.0% | |
| TTGCATTAGATTCTGTTGGG+TGG | + | chr2_1:14781577-14781596 | Msa0197110:three_prime_UTR | 40.0% | |
| ATCCAGTCATTACGAAGACA+CGG | - | chr2_1:14781672-14781691 | None:intergenic | 40.0% | |
| ACTGAAATCAATGGCGTCAC+GGG | + | chr2_1:14777385-14777404 | Msa0197110:exon | 45.0% | |
| TATCGGAATCAGCAGATGGT+CGG | - | chr2_1:14777469-14777488 | None:intergenic | 45.0% | |
| GTAATACTCCTGAGGACCAT+CGG | - | chr2_1:14777498-14777517 | None:intergenic | 45.0% | |
| ATTACACCGGCGGTGAAAAA+AGG | + | chr2_1:14777513-14777532 | Msa0197110:CDS | 45.0% | |
| GAAATTGGGAGAGATGTGAG+AGG | + | chr2_1:14777782-14777801 | Msa0197110:intron | 45.0% | |
| ! | GAGGAGTACATGTGCTTCAT+AGG | - | chr2_1:14777965-14777984 | None:intergenic | 45.0% |
| GCACATGTACTCCTCAGATT+AGG | + | chr2_1:14777970-14777989 | Msa0197110:intron | 45.0% | |
| GCATACTGTCGTAGTAGTGT+AGG | + | chr2_1:14778231-14778250 | Msa0197110:intron | 45.0% | |
| !! | AGAGCATTGCCATTAGACCA+AGG | - | chr2_1:14778574-14778593 | None:intergenic | 45.0% |
| ! | CTGCTATTTGACAACACTGC+TGG | + | chr2_1:14778866-14778885 | Msa0197110:intron | 45.0% |
| ! | ACAGGTGTGTTGCATTTTGC+TGG | + | chr2_1:14779025-14779044 | Msa0197110:intron | 45.0% |
| !!! | CTACAGGGGTTTTCTAGTTC+TGG | + | chr2_1:14779125-14779144 | Msa0197110:intron | 45.0% |
| CAAGAAAAGGAGGACAGCAA+CGG | + | chr2_1:14779221-14779240 | Msa0197110:intron | 45.0% | |
| !! | TTGGTGTTGAATGTGGCTGA+TGG | + | chr2_1:14779280-14779299 | Msa0197110:intron | 45.0% |
| ATGTGGCTGATGGAAGAAAG+AGG | + | chr2_1:14779290-14779309 | Msa0197110:intron | 45.0% | |
| TGTGGCTGATGGAAGAAAGA+GGG | + | chr2_1:14779291-14779310 | Msa0197110:intron | 45.0% | |
| !! | TTTGGCCTTTTAAGCCCAAG+AGG | + | chr2_1:14779357-14779376 | Msa0197110:intron | 45.0% |
| CAACACGAAACTGGGATAGT+GGG | - | chr2_1:14779437-14779456 | None:intergenic | 45.0% | |
| GAACTTCAAGCACCTGTGAA+TGG | + | chr2_1:14779700-14779719 | Msa0197110:intron | 45.0% | |
| !! | CATTTCCTTTTGAAGGGTCC+TGG | - | chr2_1:14779952-14779971 | None:intergenic | 45.0% |
| TTCAACCAAGCTAGGCAACT+TGG | + | chr2_1:14779986-14780005 | Msa0197110:CDS | 45.0% | |
| !! | GTAAAGCTTGTTGACCTTGG+AGG | - | chr2_1:14780046-14780065 | None:intergenic | 45.0% |
| !! | CCAGTAAAGCTTGTTGACCT+TGG | - | chr2_1:14780049-14780068 | None:intergenic | 45.0% |
| CCAAGGTCAACAAGCTTTAC+TGG | + | chr2_1:14780046-14780065 | Msa0197110:intron | 45.0% | |
| CCTCAAAGGTCCGTCATTTA+CGG | - | chr2_1:14780173-14780192 | None:intergenic | 45.0% | |
| GGATCATCCAATCTCCTCAA+AGG | - | chr2_1:14780187-14780206 | None:intergenic | 45.0% | |
| AGAATGCCCTGATATGTGTG+TGG | + | chr2_1:14780483-14780502 | Msa0197110:intron | 45.0% | |
| GAATGCCCTGATATGTGTGT+GGG | + | chr2_1:14780484-14780503 | Msa0197110:intron | 45.0% | |
| !! | AGCTGTTTTCACGGAGCTTA+TGG | - | chr2_1:14780841-14780860 | None:intergenic | 45.0% |
| AATGAAGCTTGGCTCCTTTC+CGG | - | chr2_1:14781064-14781083 | None:intergenic | 45.0% | |
| AAGGAGCCAAGCTTCATTTC+AGG | + | chr2_1:14781066-14781085 | Msa0197110:CDS | 45.0% | |
| AGGAGCCAAGCTTCATTTCA+GGG | + | chr2_1:14781067-14781086 | Msa0197110:CDS | 45.0% | |
| CAAGCTTCATTTCAGGGAGT+GGG | + | chr2_1:14781073-14781092 | Msa0197110:CDS | 45.0% | |
| ! | AGCTAGCCTGAGTTGTATTG+AGG | - | chr2_1:14781221-14781240 | None:intergenic | 45.0% |
| ! | ATACAACTCAGGCTAGCTGA+TGG | + | chr2_1:14781223-14781242 | Msa0197110:CDS | 45.0% |
| AGGTCTAGACGCATCAATGA+AGG | - | chr2_1:14781302-14781321 | None:intergenic | 45.0% | |
| TTCATTGATGCGTCTAGACC+TGG | + | chr2_1:14781301-14781320 | Msa0197110:CDS | 45.0% | |
| TCATTGATGCGTCTAGACCT+GGG | + | chr2_1:14781302-14781321 | Msa0197110:CDS | 45.0% | |
| TCTCATCAGCCAGAACCTTT+GGG | - | chr2_1:14781366-14781385 | None:intergenic | 45.0% | |
| ACACAGACTATAGAGCAAGC+AGG | + | chr2_1:14781385-14781404 | Msa0197110:CDS | 45.0% | |
| GACTATAGAGCAAGCAGGAT+TGG | + | chr2_1:14781390-14781409 | Msa0197110:CDS | 45.0% | |
| AGATATTCCCTCAAAGCAGG+GGG | - | chr2_1:14781522-14781541 | None:intergenic | 45.0% | |
| AGCAGATGGTCGGTTGAGAT+CGG | - | chr2_1:14777459-14777478 | None:intergenic | 50.0% | |
| TCGCTATCGGAATCAGCAGA+TGG | - | chr2_1:14777473-14777492 | None:intergenic | 50.0% | |
| !! | GGTCCTCAGGAGTATTACAC+CGG | + | chr2_1:14777500-14777519 | Msa0197110:CDS | 50.0% |
| GTCGTGTCGAACAGATATCC+AGG | - | chr2_1:14778001-14778020 | None:intergenic | 50.0% | |
| GCTGCTCTTCCTTGGTCTAA+TGG | + | chr2_1:14778562-14778581 | Msa0197110:intron | 50.0% | |
| TACTCCAATTAGCTGGAGCC+TGG | + | chr2_1:14778894-14778913 | Msa0197110:intron | 50.0% | |
| TCCACTGCAACTCTGAACAC+AGG | + | chr2_1:14779007-14779026 | Msa0197110:intron | 50.0% | |
| ACCTGTGTTCAGAGTTGCAG+TGG | - | chr2_1:14779011-14779030 | None:intergenic | 50.0% | |
| CTGTGGCCGTAAAATGTCTG+TGG | - | chr2_1:14779097-14779116 | None:intergenic | 50.0% | |
| ! | GACATTTTACGGCCACAGTC+TGG | + | chr2_1:14779099-14779118 | Msa0197110:intron | 50.0% |
| GTGGCTGATGGAAGAAAGAG+GGG | + | chr2_1:14779292-14779311 | Msa0197110:intron | 50.0% | |
| TGGCTGATGGAAGAAAGAGG+GGG | + | chr2_1:14779293-14779312 | Msa0197110:intron | 50.0% | |
| CAAACTCCCTCTCACCCAAA+TGG | - | chr2_1:14779341-14779360 | None:intergenic | 50.0% | |
| CATTTGGGTGAGAGGGAGTT+TGG | + | chr2_1:14779339-14779358 | Msa0197110:intron | 50.0% | |
| !! | ACGAAACTGGGATAGTGGGA+TGG | - | chr2_1:14779433-14779452 | None:intergenic | 50.0% |
| CCAACACGAAACTGGGATAG+TGG | - | chr2_1:14779438-14779457 | None:intergenic | 50.0% | |
| CCACTATCCCAGTTTCGTGT+TGG | + | chr2_1:14779435-14779454 | Msa0197110:intron | 50.0% | |
| GAGATTGGCAAGGTAGTACC+AGG | + | chr2_1:14779477-14779496 | Msa0197110:intron | 50.0% | |
| CTTGTCCAGGACCCTTCAAA+AGG | + | chr2_1:14779944-14779963 | Msa0197110:CDS | 50.0% | |
| GGCAACTTGGAGCTGTAGAA+AGG | + | chr2_1:14779999-14780018 | Msa0197110:CDS | 50.0% | |
| ATCAGCTTCAGGAACCTCCA+AGG | + | chr2_1:14780029-14780048 | Msa0197110:CDS | 50.0% | |
| CAAGCTTTACTGGAACTGGC+AGG | + | chr2_1:14780056-14780075 | Msa0197110:intron | 50.0% | |
| TGGAACTGGCAGGTTACTCT+CGG | + | chr2_1:14780066-14780085 | Msa0197110:intron | 50.0% | |
| !! | CCGTAAATGACGGACCTTTG+AGG | + | chr2_1:14780170-14780189 | Msa0197110:CDS | 50.0% |
| ! | TGACGGACCTTTGAGGAGAT+TGG | + | chr2_1:14780177-14780196 | Msa0197110:CDS | 50.0% |
| CATAGCAACAGGAACCGGAA+AGG | + | chr2_1:14781047-14781066 | Msa0197110:intron | 50.0% | |
| CCACTCCCTGAAATGAAGCT+TGG | - | chr2_1:14781075-14781094 | None:intergenic | 50.0% | |
| CCAAGCTTCATTTCAGGGAG+TGG | + | chr2_1:14781072-14781091 | Msa0197110:CDS | 50.0% | |
| GTCGAGGCAACATTTGTCTC+AGG | - | chr2_1:14781133-14781152 | None:intergenic | 50.0% | |
| AACCACGAGACCAGTAGAAG+GGG | - | chr2_1:14781179-14781198 | None:intergenic | 50.0% | |
| CAACCACGAGACCAGTAGAA+GGG | - | chr2_1:14781180-14781199 | None:intergenic | 50.0% | |
| TCAACCACGAGACCAGTAGA+AGG | - | chr2_1:14781181-14781200 | None:intergenic | 50.0% | |
| TAGACGCATCAATGAAGGCG+CGG | - | chr2_1:14781297-14781316 | None:intergenic | 50.0% | |
| CATTGATGCGTCTAGACCTG+GGG | + | chr2_1:14781303-14781322 | Msa0197110:CDS | 50.0% | |
| ATTGATGCGTCTAGACCTGG+GGG | + | chr2_1:14781304-14781323 | Msa0197110:CDS | 50.0% | |
| TCATCAGCCAGAACCTTTGG+GGG | - | chr2_1:14781364-14781383 | None:intergenic | 50.0% | |
| CTCATCAGCCAGAACCTTTG+GGG | - | chr2_1:14781365-14781384 | None:intergenic | 50.0% | |
| GTCTCATCAGCCAGAACCTT+TGG | - | chr2_1:14781367-14781386 | None:intergenic | 50.0% | |
| ATATTCCCTCAAAGCAGGGG+GGG | - | chr2_1:14781520-14781539 | None:intergenic | 50.0% | |
| GATATTCCCTCAAAGCAGGG+GGG | - | chr2_1:14781521-14781540 | None:intergenic | 50.0% | |
| TCTGTTGGGTGGCTTAGCTT+TGG | + | chr2_1:14781588-14781607 | Msa0197110:three_prime_UTR | 50.0% | |
| TGCCGTGTCTTCGTAATGAC+TGG | + | chr2_1:14781667-14781686 | Msa0197110:three_prime_UTR | 50.0% | |
| ! | AAGGCATCAAGCAGTCGAGC+TGG | + | chr2_1:14777416-14777435 | Msa0197110:CDS | 55.0% |
| GATTCCGATAGCGACTCCGA+TGG | + | chr2_1:14777479-14777498 | Msa0197110:CDS | 55.0% | |
| AGGACCATCGGAGTCGCTAT+CGG | - | chr2_1:14777486-14777505 | None:intergenic | 55.0% | |
| !! | CCTCAGGAGTATTACACCGG+CGG | + | chr2_1:14777503-14777522 | Msa0197110:CDS | 55.0% |
| TCCTCAGATTAGGCGTGTCC+TGG | + | chr2_1:14777980-14777999 | Msa0197110:intron | 55.0% | |
| TCCAGGACACGCCTAATCTG+AGG | - | chr2_1:14777984-14778003 | None:intergenic | 55.0% | |
| ACCAAGGAAGAGCAGCGAGT+GGG | - | chr2_1:14778558-14778577 | None:intergenic | 55.0% | |
| CAAGCCAGGCTCCAGCTAAT+TGG | - | chr2_1:14778901-14778920 | None:intergenic | 55.0% | |
| ACGCGTTCTTGCACCGCTAT+TGG | - | chr2_1:14778966-14778985 | None:intergenic | 55.0% | |
| AATAGCGGTGCAAGAACGCG+TGG | + | chr2_1:14778965-14778984 | Msa0197110:intron | 55.0% | |
| AGTTGCAGTGGATCCCTCCA+GGG | - | chr2_1:14778999-14779018 | None:intergenic | 55.0% | |
| GCCACAGTCTGGTGTCTACA+GGG | + | chr2_1:14779110-14779129 | Msa0197110:intron | 55.0% | |
| CCACAGTCTGGTGTCTACAG+GGG | + | chr2_1:14779111-14779130 | Msa0197110:intron | 55.0% | |
| GAAAAGGAGGACAGCAACGG+CGG | + | chr2_1:14779224-14779243 | Msa0197110:intron | 55.0% | |
| GATGGAAGAAAGAGGGGGCT+AGG | + | chr2_1:14779298-14779317 | Msa0197110:intron | 55.0% | |
| GTAGCGGCCAACACGAAACT+GGG | - | chr2_1:14779445-14779464 | None:intergenic | 55.0% | |
| TGTAGCGGCCAACACGAAAC+TGG | - | chr2_1:14779446-14779465 | None:intergenic | 55.0% | |
| CTCCAGTGGAATGCTTGTCC+AGG | + | chr2_1:14779931-14779950 | Msa0197110:intron | 55.0% | |
| GTCCTGGACAAGCATTCCAC+TGG | - | chr2_1:14779936-14779955 | None:intergenic | 55.0% | |
| CAGCTCCAAGTTGCCTAGCT+TGG | - | chr2_1:14779994-14780013 | None:intergenic | 55.0% | |
| TGGAGCTGTAGAAAGGCCTC+TGG | + | chr2_1:14780006-14780025 | Msa0197110:CDS | 55.0% | |
| AAGGCCTCTGGATCAGCTTC+AGG | + | chr2_1:14780018-14780037 | Msa0197110:CDS | 55.0% | |
| GGTTCCTGAAGCTGATCCAG+AGG | - | chr2_1:14780025-14780044 | None:intergenic | 55.0% | |
| GGAACTGGCAGGTTACTCTC+GGG | + | chr2_1:14780067-14780086 | Msa0197110:intron | 55.0% | |
| GAACTGGCAGGTTACTCTCG+GGG | + | chr2_1:14780068-14780087 | Msa0197110:intron | 55.0% | |
| AACTGGCAGGTTACTCTCGG+GGG | + | chr2_1:14780069-14780088 | Msa0197110:intron | 55.0% | |
| TCTGCAGGCTCAAGCTCCTT+GGG | - | chr2_1:14780603-14780622 | None:intergenic | 55.0% | |
| ATCTGCAGGCTCAAGCTCCT+TGG | - | chr2_1:14780604-14780623 | None:intergenic | 55.0% | |
| AGGAGCTTGAGCCTGCAGAT+AGG | + | chr2_1:14780604-14780623 | Msa0197110:CDS | 55.0% | |
| AGCTTGAGCCTGCAGATAGG+AGG | + | chr2_1:14780607-14780626 | Msa0197110:CDS | 55.0% | |
| ACAGCTGACCTCCTATCTGC+AGG | - | chr2_1:14780618-14780637 | None:intergenic | 55.0% | |
| CAGGGAGTGGGAAGAACACT+TGG | + | chr2_1:14781085-14781104 | Msa0197110:CDS | 55.0% | |
| TGGAAGCAGTTCGGCTTCGA+TGG | + | chr2_1:14781105-14781124 | Msa0197110:CDS | 55.0% | |
| AGTAGAAGGGGTTGGAGCTG+AGG | - | chr2_1:14781167-14781186 | None:intergenic | 55.0% | |
| TCAGCTCCAACCCCTTCTAC+TGG | + | chr2_1:14781166-14781185 | Msa0197110:CDS | 55.0% | |
| ACGAGACCAGTAGAAGGGGT+TGG | - | chr2_1:14781175-14781194 | None:intergenic | 55.0% | |
| ! | AACCCCTTCTACTGGTCTCG+TGG | + | chr2_1:14781174-14781193 | Msa0197110:CDS | 55.0% |
| !! | TGATAGTTTTGCCGACCCCC+AGG | - | chr2_1:14781322-14781341 | None:intergenic | 55.0% |
| CATCAGCCAGAACCTTTGGG+GGG | - | chr2_1:14781363-14781382 | None:intergenic | 55.0% | |
| GGCGTCACGGGACAACAAGA+AGG | + | chr2_1:14777397-14777416 | Msa0197110:CDS | 60.0% | |
| TAGCGACTCCGATGGTCCTC+AGG | + | chr2_1:14777487-14777506 | Msa0197110:CDS | 60.0% | |
| CCGCCGGTGTAATACTCCTG+AGG | - | chr2_1:14777506-14777525 | None:intergenic | 60.0% | |
| AAGGAAGAGCAGCGAGTGGG+GGG | - | chr2_1:14778555-14778574 | None:intergenic | 60.0% | |
| CAAGGAAGAGCAGCGAGTGG+GGG | - | chr2_1:14778556-14778575 | None:intergenic | 60.0% | |
| CCAAGGAAGAGCAGCGAGTG+GGG | - | chr2_1:14778557-14778576 | None:intergenic | 60.0% | |
| GACCAAGGAAGAGCAGCGAG+TGG | - | chr2_1:14778559-14778578 | None:intergenic | 60.0% | |
| GGTGCAAGAACGCGTGGTTG+CGG | + | chr2_1:14778971-14778990 | Msa0197110:intron | 60.0% | |
| GAGTTGCAGTGGATCCCTCC+AGG | - | chr2_1:14779000-14779019 | None:intergenic | 60.0% | |
| GGCCACAGTCTGGTGTCTAC+AGG | + | chr2_1:14779109-14779128 | Msa0197110:intron | 60.0% | |
| CCCCTGTAGACACCAGACTG+TGG | - | chr2_1:14779114-14779133 | None:intergenic | 60.0% | |
| CTGCAGGCTCAAGCTCCTTG+GGG | - | chr2_1:14780602-14780621 | None:intergenic | 60.0% | |
| GAAGGGGTTGGAGCTGAGGT+GGG | - | chr2_1:14781163-14781182 | None:intergenic | 60.0% | |
| AGAAGGGGTTGGAGCTGAGG+TGG | - | chr2_1:14781164-14781183 | None:intergenic | 60.0% | |
| CGCGGATGTCGCCAATTGTG+TGG | - | chr2_1:14781279-14781298 | None:intergenic | 60.0% | |
| ATGCGTCTAGACCTGGGGGT+CGG | + | chr2_1:14781308-14781327 | Msa0197110:CDS | 60.0% | |
| !! | GATGATGGGGTTCCCCCCAA+AGG | + | chr2_1:14781348-14781367 | Msa0197110:CDS | 60.0% |
| AGGAAACCCCCCCTGCTTTG+AGG | + | chr2_1:14781511-14781530 | Msa0197110:three_prime_UTR | 60.0% | |
| GGAAACCCCCCCTGCTTTGA+GGG | + | chr2_1:14781512-14781531 | Msa0197110:three_prime_UTR | 60.0% | |
| CCCCACTCGCTGCTCTTCCT+TGG | + | chr2_1:14778554-14778573 | Msa0197110:intron | 65.0% | |
| !! | TGAGGTGGGAGGCGTTGTCG+AGG | - | chr2_1:14781149-14781168 | None:intergenic | 65.0% |
| GGGGTTCCCCCCAAAGGTTC+TGG | + | chr2_1:14781354-14781373 | Msa0197110:CDS | 65.0% | |
| AACGCGTGGTTGCGGAGCCC+TGG | + | chr2_1:14778979-14778998 | Msa0197110:intron | 70.0% | |
| CGTGGTTGCGGAGCCCTGGA+GGG | + | chr2_1:14778983-14779002 | Msa0197110:intron | 70.0% | |
| GGGGTTGGAGCTGAGGTGGG+AGG | - | chr2_1:14781160-14781179 | None:intergenic | 70.0% | |
| GCGTGGTTGCGGAGCCCTGG+AGG | + | chr2_1:14778982-14779001 | Msa0197110:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 14777356 | 14781741 | 14777356 | ID=Msa0197110;Name=Msa0197110 |
| chr2_1 | mRNA | 14777356 | 14781741 | 14777356 | ID=Msa0197110-mRNA-1;Parent=Msa0197110;Name=Msa0197110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=39|0.75|0.6|1|0.75|0.6|5|300|294 |
| chr2_1 | exon | 14777356 | 14777534 | 14777356 | ID=Msa0197110-mRNA-1:exon:6245;Parent=Msa0197110-mRNA-1 |
| chr2_1 | exon | 14779937 | 14780050 | 14779937 | ID=Msa0197110-mRNA-1:exon:6246;Parent=Msa0197110-mRNA-1 |
| chr2_1 | exon | 14780078 | 14780228 | 14780078 | ID=Msa0197110-mRNA-1:exon:6247;Parent=Msa0197110-mRNA-1 |
| chr2_1 | exon | 14780579 | 14780674 | 14780579 | ID=Msa0197110-mRNA-1:exon:6248;Parent=Msa0197110-mRNA-1 |
| chr2_1 | exon | 14781058 | 14781741 | 14781058 | ID=Msa0197110-mRNA-1:exon:6249;Parent=Msa0197110-mRNA-1 |
| chr2_1 | five_prime_UTR | 14777356 | 14777394 | 14777356 | ID=Msa0197110-mRNA-1:five_prime_utr;Parent=Msa0197110-mRNA-1 |
| chr2_1 | CDS | 14777395 | 14777534 | 14777395 | ID=Msa0197110-mRNA-1:cds;Parent=Msa0197110-mRNA-1 |
| chr2_1 | CDS | 14779937 | 14780050 | 14779937 | ID=Msa0197110-mRNA-1:cds;Parent=Msa0197110-mRNA-1 |
| chr2_1 | CDS | 14780078 | 14780228 | 14780078 | ID=Msa0197110-mRNA-1:cds;Parent=Msa0197110-mRNA-1 |
| chr2_1 | CDS | 14780579 | 14780674 | 14780579 | ID=Msa0197110-mRNA-1:cds;Parent=Msa0197110-mRNA-1 |
| chr2_1 | CDS | 14781058 | 14781441 | 14781058 | ID=Msa0197110-mRNA-1:cds;Parent=Msa0197110-mRNA-1 |
| chr2_1 | three_prime_UTR | 14781442 | 14781741 | 14781442 | ID=Msa0197110-mRNA-1:three_prime_utr;Parent=Msa0197110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
