Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276750 | XP_013462901.1 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276750 | sp|Q8RWU7|PUX4_ARATH | 67.419 | 310 | 78 | 7 | 1 | 294 | 1 | 303 | 2.87e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276750 | I3T3U9 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015670 | Msa0276750 | -0.819179 | 1.330761e-52 | -8.615850e-47 |
| Msa0039250 | Msa0276750 | -0.802338 | 5.881698e-49 | -8.615850e-47 |
| Msa0133720 | Msa0276750 | -0.803040 | 4.214481e-49 | -8.615850e-47 |
| Msa0197110 | Msa0276750 | 0.988819 | 1.548749e-175 | -8.615850e-47 |
| Msa0276750 | Msa0316690 | 0.991712 | 4.004673e-189 | -8.615850e-47 |
| Msa0276750 | Msa0379710 | -0.800812 | 1.209172e-48 | -8.615850e-47 |
| Msa0276750 | Msa0747650 | -0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0276750 | Msa0750250 | -0.801282 | 9.692697e-49 | -8.615850e-47 |
| Msa0276750 | Msa1010070 | -0.804546 | 2.051448e-49 | -8.615850e-47 |
| Msa0276750 | Msa1138320 | -0.803311 | 3.704383e-49 | -8.615850e-47 |
| Msa0276750 | Msa1359920 | -0.805676 | 1.189976e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276750 | MtrunA17_Chr2g0289211 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Msa0276750 | MtrunA17_Chr5g0439401 | 62.081 | 298 | 98 | 7 | 7 | 293 | 128 | 421 | 1.14e-118 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276750 | AT4G04210.1 | 67.419 | 310 | 78 | 7 | 1 | 294 | 1 | 303 | 2.91e-130 | 372 |
| Msa0276750 | AT4G22150.1 | 64.379 | 306 | 93 | 6 | 1 | 294 | 1 | 302 | 3.26e-124 | 357 |
| Msa0276750 | AT4G15410.1 | 56.757 | 296 | 115 | 5 | 10 | 294 | 128 | 421 | 1.51e-104 | 311 |
| Msa0276750 | AT3G21660.2 | 44.206 | 233 | 104 | 7 | 67 | 294 | 227 | 438 | 7.70e-51 | 173 |
| Msa0276750 | AT3G21660.2 | 35.079 | 191 | 73 | 10 | 3 | 192 | 84 | 224 | 2.05e-13 | 70.5 |
| Msa0276750 | AT3G21660.1 | 40.773 | 233 | 109 | 6 | 67 | 294 | 227 | 435 | 8.79e-43 | 152 |
| Msa0276750 | AT3G21660.1 | 35.079 | 191 | 73 | 10 | 3 | 192 | 84 | 224 | 1.84e-13 | 70.5 |
Find 106 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGACTGGATTTGATATT+TGG | 0.088572 | 2_3:+9019266 | Msa0276750:three_prime_UTR |
| AATGAAGCTTGGCTCCTTTC+CGG | 0.204643 | 2_3:-9018647 | None:intergenic |
| GTCTCATCAGCCAGAACCTT+TGG | 0.275592 | 2_3:-9018950 | None:intergenic |
| AAGGAGCCAAGCTTCATTTC+AGG | 0.277223 | 2_3:+9018652 | Msa0276750:CDS |
| TCTGCAGGCTCAAGCTCCTT+GGG | 0.307863 | 2_3:-9018186 | None:intergenic |
| TCTCATCAGCCAGAACCTTT+GGG | 0.313071 | 2_3:-9018949 | None:intergenic |
| CCTCAAAGGTCCGTCATTTA+CGG | 0.320498 | 2_3:-9017758 | None:intergenic |
| TTCATTGATGCGTCTAGACC+TGG | 0.350120 | 2_3:+9018887 | Msa0276750:CDS |
| TGACGGACCTTTGAGGAGAT+TGG | 0.354213 | 2_3:+9017765 | Msa0276750:CDS |
| ATCTGCAGGCTCAAGCTCCT+TGG | 0.360805 | 2_3:-9018187 | None:intergenic |
| TCTGTTGGGTGGCTTAGCTT+TGG | 0.363956 | 2_3:+9019174 | Msa0276750:three_prime_UTR |
| AAGGCCTCTGGATCAGCTTC+AGG | 0.375933 | 2_3:+9017606 | Msa0276750:CDS |
| AATGACTGGATTTGATATTT+GGG | 0.392542 | 2_3:+9019267 | Msa0276750:three_prime_UTR |
| GTGCATAAATTACAAATGTA+AGG | 0.396174 | 2_3:-9019317 | None:intergenic |
| CTATTTGCATTAGATTCTGT+TGG | 0.397237 | 2_3:+9019159 | Msa0276750:three_prime_UTR |
| TTCAATCATCACCACACAAT+TGG | 0.397764 | 2_3:+9018851 | Msa0276750:CDS |
| GACTATAGAGCAAGCAGGAT+TGG | 0.411788 | 2_3:+9018976 | Msa0276750:CDS |
| CAGCTCCAAGTTGCCTAGCT+TGG | 0.415672 | 2_3:-9017579 | None:intergenic |
| TATTTGCATTAGATTCTGTT+GGG | 0.415990 | 2_3:+9019160 | Msa0276750:three_prime_UTR |
| TGGAACTGGCAGGTTACTCT+CGG | 0.422568 | 2_3:+9017654 | Msa0276750:intron |
| TTCAACCAAGCTAGGCAACT+TGG | 0.433347 | 2_3:+9017574 | Msa0276750:CDS |
| GTCGAGGCAACATTTGTCTC+AGG | 0.447502 | 2_3:-9018716 | None:intergenic |
| GTAAAGCTTGTTGACCTTGG+AGG | 0.463131 | 2_3:-9017631 | None:intergenic |
| GAAGGGGTTGGAGCTGAGGT+GGG | 0.464702 | 2_3:-9018746 | None:intergenic |
| AGAAGGGGTTGGAGCTGAGG+TGG | 0.467204 | 2_3:-9018747 | None:intergenic |
| AACTATCAACTTCAGATGAT+GGG | 0.469653 | 2_3:+9018920 | Msa0276750:CDS |
| AGTTCTCATTCCTTCTTATG+AGG | 0.470919 | 2_3:-9018233 | None:intergenic |
| AAACTATCAACTTCAGATGA+TGG | 0.472909 | 2_3:+9018919 | Msa0276750:CDS |
| CTGAGTTGTATTGAGGTTGA+TGG | 0.475950 | 2_3:-9018797 | None:intergenic |
| CCGTAAATGACGGACCTTTG+AGG | 0.482107 | 2_3:+9017758 | Msa0276750:CDS |
| TCAACCACGAGACCAGTAGA+AGG | 0.486622 | 2_3:-9018764 | None:intergenic |
| TGGAGCTGTAGAAAGGCCTC+TGG | 0.487117 | 2_3:+9017594 | Msa0276750:CDS |
| ATAAGATATTCCCTCAAAGC+AGG | 0.487982 | 2_3:-9019108 | None:intergenic |
| TCAGCTCCAACCCCTTCTAC+TGG | 0.490883 | 2_3:+9018752 | Msa0276750:CDS |
| CCAAGCTTCATTTCAGGGAG+TGG | 0.491290 | 2_3:+9018658 | Msa0276750:CDS |
| AGGAGCTTGAGCCTGCAGAT+AGG | 0.491570 | 2_3:+9018190 | Msa0276750:CDS |
| CTCCAGTGGAATGCTTGTCC+AGG | 0.494655 | 2_3:+9017519 | Msa0276750:intron |
| TGGAAGCAGTTCGGCTTCGA+TGG | 0.495383 | 2_3:+9018691 | Msa0276750:CDS |
| CAGGGAGTGGGAAGAACACT+TGG | 0.496077 | 2_3:+9018671 | Msa0276750:CDS |
| AAGAACACTTGGAAGCAGTT+CGG | 0.502793 | 2_3:+9018682 | Msa0276750:CDS |
| GGAACTGGCAGGTTACTCTC+GGG | 0.505832 | 2_3:+9017655 | Msa0276750:intron |
| TAGCGACTCCGATGGTCCTC+AGG | 0.506781 | 2_3:+9015080 | Msa0276750:CDS |
| AAGGCATCAAGCAGTCGAGC+TGG | 0.506928 | 2_3:+9015009 | Msa0276750:CDS |
| AGGACCATCGGAGTCGCTAT+CGG | 0.507164 | 2_3:-9015076 | None:intergenic |
| AGCTAGCCTGAGTTGTATTG+AGG | 0.511959 | 2_3:-9018804 | None:intergenic |
| TCATTGATGCGTCTAGACCT+GGG | 0.516883 | 2_3:+9018888 | Msa0276750:CDS |
| CTTGTCCAGGACCCTTCAAA+AGG | 0.517282 | 2_3:+9017532 | Msa0276750:CDS |
| AGGAGCCAAGCTTCATTTCA+GGG | 0.517684 | 2_3:+9018653 | Msa0276750:CDS |
| TGCCGTGTCTTCGTAATGAC+TGG | 0.519825 | 2_3:+9019253 | Msa0276750:three_prime_UTR |
| CCACTCCCTGAAATGAAGCT+TGG | 0.521336 | 2_3:-9018658 | None:intergenic |
| TGTTGAGAGTTAGAAGCAGT+TGG | 0.522165 | 2_3:-9017688 | None:intergenic |
| ACTGAAATCAATGGCGTCAC+GGG | 0.524471 | 2_3:+9014978 | Msa0276750:exon |
| TAAATGTAAACCTCATAAGA+AGG | 0.531231 | 2_3:+9018223 | Msa0276750:CDS |
| CAAGCTTCATTTCAGGGAGT+GGG | 0.535505 | 2_3:+9018659 | Msa0276750:CDS |
| GGCAACTTGGAGCTGTAGAA+AGG | 0.539850 | 2_3:+9017587 | Msa0276750:CDS |
| GGGGTTGGAGCTGAGGTGGG+AGG | 0.540439 | 2_3:-9018743 | None:intergenic |
| AGCAGATGGTCGGTTGAGAT+CGG | 0.544156 | 2_3:-9015049 | None:intergenic |
| ACAGCTGACCTCCTATCTGC+AGG | 0.544508 | 2_3:-9018201 | None:intergenic |
| TTGCATTAGATTCTGTTGGG+TGG | 0.551802 | 2_3:+9019163 | Msa0276750:three_prime_UTR |
| CTCATCAGCCAGAACCTTTG+GGG | 0.554088 | 2_3:-9018948 | None:intergenic |
| TACTGAAATCAATGGCGTCA+CGG | 0.555373 | 2_3:+9014977 | Msa0276750:exon |
| AGGTCTAGACGCATCAATGA+AGG | 0.558576 | 2_3:-9018885 | None:intergenic |
| TAAGATATTCCCTCAAAGCA+GGG | 0.561422 | 2_3:-9019107 | None:intergenic |
| GTAATACTCCTGAGGACCAT+CGG | 0.566845 | 2_3:-9015088 | None:intergenic |
| AGTAGAAGGGGTTGGAGCTG+AGG | 0.570531 | 2_3:-9018750 | None:intergenic |
| ATACAACTCAGGCTAGCTGA+TGG | 0.570857 | 2_3:+9018809 | Msa0276750:CDS |
| CATTGATGCGTCTAGACCTG+GGG | 0.576257 | 2_3:+9018889 | Msa0276750:CDS |
| CTGCAGGCTCAAGCTCCTTG+GGG | 0.579209 | 2_3:-9018185 | None:intergenic |
| CAACCACGAGACCAGTAGAA+GGG | 0.582379 | 2_3:-9018763 | None:intergenic |
| TGAGGTGGGAGGCGTTGTCG+AGG | 0.582939 | 2_3:-9018732 | None:intergenic |
| AGCTTGAGCCTGCAGATAGG+AGG | 0.585887 | 2_3:+9018193 | Msa0276750:CDS |
| TATCGGAATCAGCAGATGGT+CGG | 0.590803 | 2_3:-9015059 | None:intergenic |
| AACCCCTTCTACTGGTCTCG+TGG | 0.592080 | 2_3:+9018760 | Msa0276750:CDS |
| GGCGTCACGGGACAACAAGA+AGG | 0.599291 | 2_3:+9014990 | Msa0276750:CDS |
| ACGAGACCAGTAGAAGGGGT+TGG | 0.600210 | 2_3:-9018758 | None:intergenic |
| CCCTTCAAAAGGAAATGATG+TGG | 0.602839 | 2_3:+9017543 | Msa0276750:CDS |
| GGATCATCCAATCTCCTCAA+AGG | 0.604327 | 2_3:-9017772 | None:intergenic |
| TGCGAGAGTACTGAAATCAA+TGG | 0.604789 | 2_3:+9014969 | Msa0276750:exon |
| TCATCAGCCAGAACCTTTGG+GGG | 0.616171 | 2_3:-9018947 | None:intergenic |
| ATGTTGTGAACAACAGACTC+AGG | 0.616871 | 2_3:-9017712 | None:intergenic |
| ATTGAAATGTGATATCAAGC+GGG | 0.616914 | 2_3:-9018834 | None:intergenic |
| ATATTCCCTCAAAGCAGGGG+GGG | 0.619503 | 2_3:-9019103 | None:intergenic |
| CATCAACCTCAATACAACTC+AGG | 0.620565 | 2_3:+9018798 | Msa0276750:CDS |
| ATCAGCTTCAGGAACCTCCA+AGG | 0.625174 | 2_3:+9017617 | Msa0276750:CDS |
| GAACTGGCAGGTTACTCTCG+GGG | 0.628067 | 2_3:+9017656 | Msa0276750:intron |
| ACTATCAACTTCAGATGATG+GGG | 0.628203 | 2_3:+9018921 | Msa0276750:CDS |
| CATAGCAACAGGAACCGGAA+AGG | 0.630097 | 2_3:+9018633 | Msa0276750:intron |
| GGTTCCTGAAGCTGATCCAG+AGG | 0.630507 | 2_3:-9017610 | None:intergenic |
| TCGCTATCGGAATCAGCAGA+TGG | 0.630862 | 2_3:-9015063 | None:intergenic |
| AATGGTTTCACCGTAAATGA+CGG | 0.634127 | 2_3:+9017748 | Msa0276750:CDS |
| CGCGGATGTCGCCAATTGTG+TGG | 0.638335 | 2_3:-9018862 | None:intergenic |
| AGATATTCCCTCAAAGCAGG+GGG | 0.639026 | 2_3:-9019105 | None:intergenic |
| ACACAGACTATAGAGCAAGC+AGG | 0.640891 | 2_3:+9018971 | Msa0276750:CDS |
| AAGATATTCCCTCAAAGCAG+GGG | 0.642574 | 2_3:-9019106 | None:intergenic |
| AACTGGCAGGTTACTCTCGG+GGG | 0.645658 | 2_3:+9017657 | Msa0276750:intron |
| ATCCAGTCATTACGAAGACA+CGG | 0.646040 | 2_3:-9019255 | None:intergenic |
| AACCACGAGACCAGTAGAAG+GGG | 0.651448 | 2_3:-9018762 | None:intergenic |
| GATTCCGATAGCGACTCCGA+TGG | 0.657927 | 2_3:+9015072 | Msa0276750:CDS |
| GATTGAAATGTGATATCAAG+CGG | 0.665002 | 2_3:-9018835 | None:intergenic |
| TAGACGCATCAATGAAGGCG+CGG | 0.675628 | 2_3:-9018880 | None:intergenic |
| CCGCCGGTGTAATACTCCTG+AGG | 0.683141 | 2_3:-9015096 | None:intergenic |
| CCTCAGGAGTATTACACCGG+CGG | 0.689148 | 2_3:+9015096 | Msa0276750:CDS |
| GGTCCTCAGGAGTATTACAC+CGG | 0.689346 | 2_3:+9015093 | Msa0276750:CDS |
| CATCAGCCAGAACCTTTGGG+GGG | 0.692287 | 2_3:-9018946 | None:intergenic |
| ATTGATGCGTCTAGACCTGG+GGG | 0.697222 | 2_3:+9018890 | Msa0276750:CDS |
| GATATTCCCTCAAAGCAGGG+GGG | 0.707190 | 2_3:-9019104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATAGTTAATAATTTTTT+TGG | + | chr2_3:9015320-9015339 | Msa0276750:intron | 10.0% |
| !!! | ATTTTTCTCAAAATTATTTT+TGG | + | chr2_3:9015921-9015940 | Msa0276750:intron | 10.0% |
| !!! | TTTTTCTCAAAATTATTTTT+GGG | + | chr2_3:9015922-9015941 | Msa0276750:intron | 10.0% |
| !!! | ATTGTTTAAAATTTTAACTA+GGG | - | chr2_3:9017169-9017188 | None:intergenic | 10.0% |
| !!! | TATTGTTTAAAATTTTAACT+AGG | - | chr2_3:9017170-9017189 | None:intergenic | 10.0% |
| !!! | TTTATTGATTTTTAGACTTA+TGG | + | chr2_3:9015199-9015218 | Msa0276750:intron | 15.0% |
| !!! | TTATTGATTTTTAGACTTAT+GGG | + | chr2_3:9015200-9015219 | Msa0276750:intron | 15.0% |
| !! | TCATGTTCTTAAATTATTAT+CGG | + | chr2_3:9015633-9015652 | Msa0276750:intron | 15.0% |
| !!! | AGTTTTTTTAATCTATATTC+AGG | + | chr2_3:9017916-9017935 | Msa0276750:intron | 15.0% |
| !!! | GTTTTTTTAATCTATATTCA+GGG | + | chr2_3:9017917-9017936 | Msa0276750:intron | 15.0% |
| !! | AATGATAAACAAAAACAAAT+AGG | + | chr2_3:9019077-9019096 | Msa0276750:three_prime_UTR | 15.0% |
| !! | AAAATCAATAAAACAGTGAA+AGG | - | chr2_3:9015191-9015210 | None:intergenic | 20.0% |
| !! | ACTAATATAATTGCAACTAT+AGG | + | chr2_3:9015703-9015722 | Msa0276750:intron | 20.0% |
| !!! | TCGCTAATAAGTTTTAAAAA+GGG | - | chr2_3:9015769-9015788 | None:intergenic | 20.0% |
| !!! | ATCGCTAATAAGTTTTAAAA+AGG | - | chr2_3:9015770-9015789 | None:intergenic | 20.0% |
| !! | GATTACAATTGAAACTTATT+AGG | + | chr2_3:9015787-9015806 | Msa0276750:intron | 20.0% |
| !!! | AACAAAGTTTTGTTAAATGA+CGG | - | chr2_3:9016359-9016378 | None:intergenic | 20.0% |
| !! | AATAAAGAGAAAACAAGAAA+AGG | + | chr2_3:9016796-9016815 | Msa0276750:intron | 20.0% |
| !! | AACAATGGTAATTAAATGAA+TGG | - | chr2_3:9017112-9017131 | None:intergenic | 20.0% |
| !!! | TTAAAATTTTAACTAGGGAA+TGG | - | chr2_3:9017164-9017183 | None:intergenic | 20.0% |
| !!! | TGATTTTGTACATTAAAAGT+TGG | + | chr2_3:9017345-9017364 | Msa0276750:intron | 20.0% |
| !! | TTCTTATTCTGTAAATAGTT+TGG | + | chr2_3:9017831-9017850 | Msa0276750:intron | 20.0% |
| !!! | TGTAAGTAAATTTTCTCTAA+TGG | + | chr2_3:9017988-9018007 | Msa0276750:intron | 20.0% |
| !!! | ACTTGTTATTTATTGTACAT+TGG | - | chr2_3:9018606-9018625 | None:intergenic | 20.0% |
| !!! | AAGTTGAGTTTTTTACAAGA+TGG | - | chr2_3:9015161-9015180 | None:intergenic | 25.0% |
| !! | AAACCAATTTTGCAAAACAA+TGG | - | chr2_3:9015418-9015437 | None:intergenic | 25.0% |
| !! | TTTGCAAAATTGGTTTCTAT+TGG | + | chr2_3:9015422-9015441 | Msa0276750:intron | 25.0% |
| ! | TTTATGTGTGTGTAATTTGA+TGG | + | chr2_3:9015452-9015471 | Msa0276750:intron | 25.0% |
| ! | AAGATAAGAGTAAGGTAAAA+GGG | - | chr2_3:9015478-9015497 | None:intergenic | 25.0% |
| ! | AAGAGTAACATGATTTCTAT+AGG | - | chr2_3:9015739-9015758 | None:intergenic | 25.0% |
| !!! | TTCTCAAAATTATTTTTGGG+TGG | + | chr2_3:9015925-9015944 | Msa0276750:intron | 25.0% |
| !!! | AGAGTTTTAAGGTAATATAG+TGG | + | chr2_3:9016267-9016286 | Msa0276750:intron | 25.0% |
| ! | TTGACAATTAGGCAATTAAA+TGG | + | chr2_3:9016513-9016532 | Msa0276750:intron | 25.0% |
| ! | AAATCAAACACTTTCAGTAA+AGG | - | chr2_3:9017331-9017350 | None:intergenic | 25.0% |
| ! | CTAAACATCGACATATTTAT+CGG | - | chr2_3:9017446-9017465 | None:intergenic | 25.0% |
| !!! | TTGTTCACAACATTGTTTTT+TGG | + | chr2_3:9017722-9017741 | Msa0276750:CDS | 25.0% |
| !!! | AACATTGTTTTTTGGAGTAA+TGG | + | chr2_3:9017730-9017749 | Msa0276750:CDS | 25.0% |
| ! | TTATTCTGTAAATAGTTTGG+AGG | + | chr2_3:9017834-9017853 | Msa0276750:intron | 25.0% |
| ! | TTTGGAGGTTAGAAAATATT+TGG | + | chr2_3:9017849-9017868 | Msa0276750:intron | 25.0% |
| ! | TTAAAAAAACTCGATCTTCT+AGG | - | chr2_3:9017907-9017926 | None:intergenic | 25.0% |
| !!! | TTATTTTGTAAGTTCACTGT+AGG | + | chr2_3:9018016-9018035 | Msa0276750:intron | 25.0% |
| ! | TAAATGTAAACCTCATAAGA+AGG | + | chr2_3:9018223-9018242 | Msa0276750:CDS | 25.0% |
| ! | GTTTGTATTTGTCCAATTTA+GGG | + | chr2_3:9018286-9018305 | Msa0276750:intron | 25.0% |
| !!! | TTTAACATAAGCTGTTTTCA+CGG | - | chr2_3:9018436-9018455 | None:intergenic | 25.0% |
| ! | ATTAAGATGTTTATCCAAAC+AGG | + | chr2_3:9018531-9018550 | Msa0276750:intron | 25.0% |
| ! | TTAAGATGTTTATCCAAACA+GGG | + | chr2_3:9018532-9018551 | Msa0276750:intron | 25.0% |
| ! | TATTTGCATTAGATTCTGTT+GGG | + | chr2_3:9019160-9019179 | Msa0276750:three_prime_UTR | 25.0% |
| ! | TAATGACTGGATTTGATATT+TGG | + | chr2_3:9019266-9019285 | Msa0276750:three_prime_UTR | 25.0% |
| ! | AATGACTGGATTTGATATTT+GGG | + | chr2_3:9019267-9019286 | Msa0276750:three_prime_UTR | 25.0% |
| ! | GTATTATACTTTTCGTGAGA+AGG | + | chr2_3:9015280-9015299 | Msa0276750:intron | 30.0% |
| CAAGATAAGAGTAAGGTAAA+AGG | - | chr2_3:9015479-9015498 | None:intergenic | 30.0% | |
| ! | CTTTTACCTTACTCTTATCT+TGG | + | chr2_3:9015477-9015496 | Msa0276750:intron | 30.0% |
| ATTGAACCAAGATAAGAGTA+AGG | - | chr2_3:9015486-9015505 | None:intergenic | 30.0% | |
| TAACCACTATTCTATATTCG+AGG | - | chr2_3:9015853-9015872 | None:intergenic | 30.0% | |
| !! | TTTAAGGTAATATAGTGGAC+TGG | + | chr2_3:9016272-9016291 | Msa0276750:intron | 30.0% |
| !! | TTAAGGTAATATAGTGGACT+GGG | + | chr2_3:9016273-9016292 | Msa0276750:intron | 30.0% |
| ! | ATACACTATTTTGCCAATAG+CGG | + | chr2_3:9016538-9016557 | Msa0276750:intron | 30.0% |
| !!! | TTTTCTAGTTCTGGTGTTTT+TGG | + | chr2_3:9016722-9016741 | Msa0276750:intron | 30.0% |
| AAAGAGAAAACAAGAAAAGG+AGG | + | chr2_3:9016799-9016818 | Msa0276750:intron | 30.0% | |
| !!! | TTCCCTATTTTTATGCCATT+TGG | + | chr2_3:9016911-9016930 | Msa0276750:intron | 30.0% |
| !!! | TCCCTATTTTTATGCCATTT+GGG | + | chr2_3:9016912-9016931 | Msa0276750:intron | 30.0% |
| ACCCAAATGGCATAAAAATA+GGG | - | chr2_3:9016916-9016935 | None:intergenic | 30.0% | |
| GATGTACTTATTTAATCGAC+AGG | - | chr2_3:9017390-9017409 | None:intergenic | 30.0% | |
| !! | AGAAAATATTTGGAGTATCG+AGG | + | chr2_3:9017859-9017878 | Msa0276750:intron | 30.0% |
| AATCTATATTCAGGGAACAA+TGG | + | chr2_3:9017925-9017944 | Msa0276750:intron | 30.0% | |
| ! | TGGCTTTTATAATCTTGACA+AGG | + | chr2_3:9018039-9018058 | Msa0276750:intron | 30.0% |
| GGGAAAATATACTTTCTTCA+TGG | + | chr2_3:9018090-9018109 | Msa0276750:intron | 30.0% | |
| TTTCTTCATGGTTATATCGA+TGG | + | chr2_3:9018102-9018121 | Msa0276750:intron | 30.0% | |
| AATGCTCTGCATTCAAAAAT+AGG | - | chr2_3:9018151-9018170 | None:intergenic | 30.0% | |
| !! | AGTTTTCTGTTTGAGTTCTT+TGG | + | chr2_3:9018264-9018283 | Msa0276750:intron | 30.0% |
| GGTTTGTATTTGTCCAATTT+AGG | + | chr2_3:9018285-9018304 | Msa0276750:intron | 30.0% | |
| AATCCAAACAAACCCTAAAT+TGG | - | chr2_3:9018301-9018320 | None:intergenic | 30.0% | |
| TTTCATAGTAAAACCCTGTT+TGG | - | chr2_3:9018548-9018567 | None:intergenic | 30.0% | |
| ATGTGTGATAACAACAACAA+AGG | - | chr2_3:9018581-9018600 | None:intergenic | 30.0% | |
| ATTGAAATGTGATATCAAGC+GGG | - | chr2_3:9018837-9018856 | None:intergenic | 30.0% | |
| GATTGAAATGTGATATCAAG+CGG | - | chr2_3:9018838-9018857 | None:intergenic | 30.0% | |
| AAACTATCAACTTCAGATGA+TGG | + | chr2_3:9018919-9018938 | Msa0276750:CDS | 30.0% | |
| AACTATCAACTTCAGATGAT+GGG | + | chr2_3:9018920-9018939 | Msa0276750:CDS | 30.0% | |
| CTATTTGCATTAGATTCTGT+TGG | + | chr2_3:9019159-9019178 | Msa0276750:three_prime_UTR | 30.0% | |
| ! | TTATACTTTTCGTGAGAAGG+AGG | + | chr2_3:9015283-9015302 | Msa0276750:intron | 35.0% |
| TGTGAGGTGTGAAACTTATT+AGG | + | chr2_3:9015389-9015408 | Msa0276750:intron | 35.0% | |
| GTGAGGTGTGAAACTTATTA+GGG | + | chr2_3:9015390-9015409 | Msa0276750:intron | 35.0% | |
| !! | GCACCATTGTTTTGCAAAAT+TGG | + | chr2_3:9015412-9015431 | Msa0276750:intron | 35.0% |
| ATGAAATTCAGACTCAGACA+CGG | - | chr2_3:9015675-9015694 | None:intergenic | 35.0% | |
| CTTCCTCGAATATAGAATAG+TGG | + | chr2_3:9015847-9015866 | Msa0276750:intron | 35.0% | |
| AAGCACTCGAAACTTATCTT+AGG | + | chr2_3:9015948-9015967 | Msa0276750:intron | 35.0% | |
| AGCACTCGAAACTTATCTTA+GGG | + | chr2_3:9015949-9015968 | Msa0276750:intron | 35.0% | |
| ! | ATCTTCAAAACTAGTTTGCG+TGG | + | chr2_3:9016008-9016027 | Msa0276750:intron | 35.0% |
| ! | TCTTCAAAACTAGTTTGCGT+GGG | + | chr2_3:9016009-9016028 | Msa0276750:intron | 35.0% |
| !! | AAGTTGAGCTAGTTCTGAAT+AGG | - | chr2_3:9016045-9016064 | None:intergenic | 35.0% |
| !! | TAGCTCAACTTGTTAAAGAG+TGG | + | chr2_3:9016054-9016073 | Msa0276750:intron | 35.0% |
| !! | AGCTCAACTTGTTAAAGAGT+GGG | + | chr2_3:9016055-9016074 | Msa0276750:intron | 35.0% |
| AACACATTAAAGACGTCGAA+AGG | - | chr2_3:9016201-9016220 | None:intergenic | 35.0% | |
| CCTTAAAACTCTCCAACAAT+GGG | - | chr2_3:9016259-9016278 | None:intergenic | 35.0% | |
| ACCTTAAAACTCTCCAACAA+TGG | - | chr2_3:9016260-9016279 | None:intergenic | 35.0% | |
| CTGGGTAATAATGTTAATCG+TGG | + | chr2_3:9016291-9016310 | Msa0276750:intron | 35.0% | |
| AGTGTATCCTAGAACTATAG+AGG | + | chr2_3:9016389-9016408 | Msa0276750:intron | 35.0% | |
| GAACAAACCTCTATAGTTCT+AGG | - | chr2_3:9016399-9016418 | None:intergenic | 35.0% | |
| TAATTGTCAATTGTCAAGCC+AGG | - | chr2_3:9016503-9016522 | None:intergenic | 35.0% | |
| TGGCTTGACAATTGACAATT+AGG | + | chr2_3:9016502-9016521 | Msa0276750:intron | 35.0% | |
| !! | ACCACATTTGACTTGATTTG+TGG | - | chr2_3:9016653-9016672 | None:intergenic | 35.0% |
| GGTCAGAAAACATAAGATTG+TGG | - | chr2_3:9016748-9016767 | None:intergenic | 35.0% | |
| ! | ATCTTATGTTTTCTGACCTG+TGG | + | chr2_3:9016750-9016769 | Msa0276750:intron | 35.0% |
| ATTCAACACCAAGTAACACA+AGG | - | chr2_3:9016860-9016879 | None:intergenic | 35.0% | |
| CACCCAAATGGCATAAAAAT+AGG | - | chr2_3:9016917-9016936 | None:intergenic | 35.0% | |
| AGATTGTAGTGAAACCTCTT+GGG | - | chr2_3:9016962-9016981 | None:intergenic | 35.0% | |
| AAGATTGTAGTGAAACCTCT+TGG | - | chr2_3:9016963-9016982 | None:intergenic | 35.0% | |
| ! | TACACCTCTCTATTTGAGAT+TGG | + | chr2_3:9017050-9017069 | Msa0276750:intron | 35.0% |
| ACATCAGAAACATATCTTCC+TGG | - | chr2_3:9017086-9017105 | None:intergenic | 35.0% | |
| CCATTGTTACAGAGTAACAA+TGG | - | chr2_3:9017127-9017146 | None:intergenic | 35.0% | |
| CCATTGTTACTCTGTAACAA+TGG | + | chr2_3:9017124-9017143 | Msa0276750:intron | 35.0% | |
| TACTCTGTAACAATGGAAAC+AGG | + | chr2_3:9017131-9017150 | Msa0276750:intron | 35.0% | |
| AAGAAAGGAGTGAAATGGAA+TGG | - | chr2_3:9017224-9017243 | None:intergenic | 35.0% | |
| ! | CCACATCATTTCCTTTTGAA+GGG | - | chr2_3:9017546-9017565 | None:intergenic | 35.0% |
| ! | TCCACATCATTTCCTTTTGA+AGG | - | chr2_3:9017547-9017566 | None:intergenic | 35.0% |
| ! | ATGCAATTTTCAACCAAGCT+AGG | + | chr2_3:9017566-9017585 | Msa0276750:CDS | 35.0% |
| AATGGTTTCACCGTAAATGA+CGG | + | chr2_3:9017748-9017767 | Msa0276750:CDS | 35.0% | |
| ATACAGTACCTCCAAAAATG+AGG | - | chr2_3:9017806-9017825 | None:intergenic | 35.0% | |
| AAAAAACTCGATCTTCTAGG+AGG | - | chr2_3:9017904-9017923 | None:intergenic | 35.0% | |
| ! | TTTTGTAAGTTCACTGTAGG+TGG | + | chr2_3:9018019-9018038 | Msa0276750:intron | 35.0% |
| ! | ATTTTCCCACACACATATCA+GGG | - | chr2_3:9018078-9018097 | None:intergenic | 35.0% |
| ! | TATTTTCCCACACACATATC+AGG | - | chr2_3:9018079-9018098 | None:intergenic | 35.0% |
| AGTTCTCATTCCTTCTTATG+AGG | - | chr2_3:9018236-9018255 | None:intergenic | 35.0% | |
| ! | TGTCCAATTTAGGGTTTGTT+TGG | + | chr2_3:9018295-9018314 | Msa0276750:intron | 35.0% |
| AATAAGCTGAAAACAGCTTG+TGG | - | chr2_3:9018403-9018422 | None:intergenic | 35.0% | |
| TGATAACAACAACAAAGGAC+TGG | - | chr2_3:9018576-9018595 | None:intergenic | 35.0% | |
| AAGTGCTTTATCATAGCAAC+AGG | + | chr2_3:9018622-9018641 | Msa0276750:intron | 35.0% | |
| TTTATCATAGCAACAGGAAC+CGG | + | chr2_3:9018628-9018647 | Msa0276750:intron | 35.0% | |
| TTCAATCATCACCACACAAT+TGG | + | chr2_3:9018851-9018870 | Msa0276750:CDS | 35.0% | |
| ACTATCAACTTCAGATGATG+GGG | + | chr2_3:9018921-9018940 | Msa0276750:CDS | 35.0% | |
| TAAGATATTCCCTCAAAGCA+GGG | - | chr2_3:9019110-9019129 | None:intergenic | 35.0% | |
| ATAAGATATTCCCTCAAAGC+AGG | - | chr2_3:9019111-9019130 | None:intergenic | 35.0% | |
| !! | TGCGAGAGTACTGAAATCAA+TGG | + | chr2_3:9014969-9014988 | Msa0276750:exon | 40.0% |
| TACTGAAATCAATGGCGTCA+CGG | + | chr2_3:9014977-9014996 | Msa0276750:exon | 40.0% | |
| !!! | ATTGAACCTTTTTTCACCGC+CGG | - | chr2_3:9015115-9015134 | None:intergenic | 40.0% |
| TTGAAACAGTGAAGTGAGTG+AGG | + | chr2_3:9015349-9015368 | Msa0276750:intron | 40.0% | |
| AAGTGAGTGAGGTGTGAAAT+TGG | + | chr2_3:9015360-9015379 | Msa0276750:intron | 40.0% | |
| AGTGAGTGAGGTGTGAAATT+GGG | + | chr2_3:9015361-9015380 | Msa0276750:intron | 40.0% | |
| GCACTCGAAACTTATCTTAG+GGG | + | chr2_3:9015950-9015969 | Msa0276750:intron | 40.0% | |
| !! | TCAACTTGTTAAAGAGTGGG+AGG | + | chr2_3:9016058-9016077 | Msa0276750:intron | 40.0% |
| ! | GTCTAATGGCAATGCTCTTT+TGG | + | chr2_3:9016165-9016184 | Msa0276750:intron | 40.0% |
| AAAGCAAGTCAACCCATTGT+TGG | + | chr2_3:9016244-9016263 | Msa0276750:intron | 40.0% | |
| ! | CCCATTGTTGGAGAGTTTTA+AGG | + | chr2_3:9016256-9016275 | Msa0276750:intron | 40.0% |
| GCTATATCGCTATAGCATAG+CGG | - | chr2_3:9016427-9016446 | None:intergenic | 40.0% | |
| ! | TGCTATTTGACAACACTGCT+GGG | + | chr2_3:9016455-9016474 | Msa0276750:intron | 40.0% |
| GGGTAATTACTCCAATTAGC+TGG | + | chr2_3:9016475-9016494 | Msa0276750:intron | 40.0% | |
| ! | TTTTGCTGGAGCAGTTATTG+CGG | + | chr2_3:9016627-9016646 | Msa0276750:intron | 40.0% |
| GCCACAAATCAAGTCAAATG+TGG | + | chr2_3:9016649-9016668 | Msa0276750:intron | 40.0% | |
| ! | CAGTCACCACAGACATTTTA+CGG | + | chr2_3:9016676-9016695 | Msa0276750:intron | 40.0% |
| ! | CTTCTATGTTACTTCTCCAC+AGG | - | chr2_3:9016769-9016788 | None:intergenic | 40.0% |
| GTGGAGAAGTAACATAGAAG+AGG | + | chr2_3:9016769-9016788 | Msa0276750:intron | 40.0% | |
| GTAACACAAGGTTGCAGTAA+TGG | - | chr2_3:9016848-9016867 | None:intergenic | 40.0% | |
| ! | TACTGCAACCTTGTGTTACT+TGG | + | chr2_3:9016849-9016868 | Msa0276750:intron | 40.0% |
| !! | GTGTTACTTGGTGTTGAATG+TGG | + | chr2_3:9016861-9016880 | Msa0276750:intron | 40.0% |
| !! | TTTTATGCCATTTGGGTGAG+AGG | + | chr2_3:9016919-9016938 | Msa0276750:intron | 40.0% |
| ! | TTTATGCCATTTGGGTGAGA+GGG | + | chr2_3:9016920-9016939 | Msa0276750:intron | 40.0% |
| TGAAACCTCTTGGGCTTAAA+AGG | - | chr2_3:9016953-9016972 | None:intergenic | 40.0% | |
| ! | TCTCAAATAGAGAGGTGTAG+CGG | - | chr2_3:9017049-9017068 | None:intergenic | 40.0% |
| CTTGCCAATCTCAAATAGAG+AGG | - | chr2_3:9017057-9017076 | None:intergenic | 40.0% | |
| ! | CTCTCTATTTGAGATTGGCA+AGG | + | chr2_3:9017055-9017074 | Msa0276750:intron | 40.0% |
| ! | TGGTTTGGAATCAGATAGAG+CGG | - | chr2_3:9017204-9017223 | None:intergenic | 40.0% |
| AGGAGTGAAATGGAATGGTT+TGG | - | chr2_3:9017219-9017238 | None:intergenic | 40.0% | |
| ACGTCAAGAAAGGAGTGAAA+TGG | - | chr2_3:9017229-9017248 | None:intergenic | 40.0% | |
| CTATGTTTGCACGTCAAGAA+AGG | - | chr2_3:9017239-9017258 | None:intergenic | 40.0% | |
| GTGCAAACATAGCATCTTGA+TGG | + | chr2_3:9017247-9017266 | Msa0276750:intron | 40.0% | |
| AAAGTGACTTCTCCATTCAC+AGG | - | chr2_3:9017303-9017322 | None:intergenic | 40.0% | |
| CAATTGTACATTGTCTCCAG+TGG | + | chr2_3:9017505-9017524 | Msa0276750:intron | 40.0% | |
| CCCTTCAAAAGGAAATGATG+TGG | + | chr2_3:9017543-9017562 | Msa0276750:CDS | 40.0% | |
| TCAACAAGCTTTACTGGAAC+TGG | + | chr2_3:9017640-9017659 | Msa0276750:intron | 40.0% | |
| TGTTGAGAGTTAGAAGCAGT+TGG | - | chr2_3:9017691-9017710 | None:intergenic | 40.0% | |
| ATGTTGTGAACAACAGACTC+AGG | - | chr2_3:9017715-9017734 | None:intergenic | 40.0% | |
| ! | TCCTGCAAATGCCTCATTTT+TGG | + | chr2_3:9017792-9017811 | Msa0276750:CDS | 40.0% |
| ! | TCCAAAAATGAGGCATTTGC+AGG | - | chr2_3:9017796-9017815 | None:intergenic | 40.0% |
| !! | TGCAAATGCCTCATTTTTGG+AGG | + | chr2_3:9017795-9017814 | Msa0276750:CDS | 40.0% |
| !! | CTTCTAGGAGGAGTCATTTT+GGG | - | chr2_3:9017892-9017911 | None:intergenic | 40.0% |
| !! | TCTTCTAGGAGGAGTCATTT+TGG | - | chr2_3:9017893-9017912 | None:intergenic | 40.0% |
| TAAAAAGTCTGAATGCCCCA+AGG | + | chr2_3:9018170-9018189 | Msa0276750:CDS | 40.0% | |
| AGACTGCTTAAGAGAGCTTA+TGG | + | chr2_3:9018359-9018378 | Msa0276750:intron | 40.0% | |
| AAGAACACTTGGAAGCAGTT+CGG | + | chr2_3:9018682-9018701 | Msa0276750:CDS | 40.0% | |
| CTGAGTTGTATTGAGGTTGA+TGG | - | chr2_3:9018800-9018819 | None:intergenic | 40.0% | |
| CATCAACCTCAATACAACTC+AGG | + | chr2_3:9018798-9018817 | Msa0276750:CDS | 40.0% | |
| AAGATATTCCCTCAAAGCAG+GGG | - | chr2_3:9019109-9019128 | None:intergenic | 40.0% | |
| TTGCATTAGATTCTGTTGGG+TGG | + | chr2_3:9019163-9019182 | Msa0276750:three_prime_UTR | 40.0% | |
| ATCCAGTCATTACGAAGACA+CGG | - | chr2_3:9019258-9019277 | None:intergenic | 40.0% | |
| ACTGAAATCAATGGCGTCAC+GGG | + | chr2_3:9014978-9014997 | Msa0276750:exon | 45.0% | |
| TATCGGAATCAGCAGATGGT+CGG | - | chr2_3:9015062-9015081 | None:intergenic | 45.0% | |
| GTAATACTCCTGAGGACCAT+CGG | - | chr2_3:9015091-9015110 | None:intergenic | 45.0% | |
| ATTACACCGGCGGTGAAAAA+AGG | + | chr2_3:9015106-9015125 | Msa0276750:CDS | 45.0% | |
| GTGAAATTGGGAGAGATGTG+AGG | + | chr2_3:9015373-9015392 | Msa0276750:intron | 45.0% | |
| ! | GAGGAGTACATGTGCTTCAT+AGG | - | chr2_3:9015554-9015573 | None:intergenic | 45.0% |
| GCACATGTACTCCTCAGATT+AGG | + | chr2_3:9015559-9015578 | Msa0276750:intron | 45.0% | |
| GCATACTGTCGTAGTAGTGT+AGG | + | chr2_3:9015820-9015839 | Msa0276750:intron | 45.0% | |
| !! | AGAGCATTGCCATTAGACCA+AGG | - | chr2_3:9016163-9016182 | None:intergenic | 45.0% |
| ! | CTGCTATTTGACAACACTGC+TGG | + | chr2_3:9016454-9016473 | Msa0276750:intron | 45.0% |
| ! | ACAGGTGTGTTGCATTTTGC+TGG | + | chr2_3:9016613-9016632 | Msa0276750:intron | 45.0% |
| !!! | CTACAGGGGTTTTCTAGTTC+TGG | + | chr2_3:9016713-9016732 | Msa0276750:intron | 45.0% |
| CAAGAAAAGGAGGACAGCAA+CGG | + | chr2_3:9016809-9016828 | Msa0276750:intron | 45.0% | |
| !! | TTGGTGTTGAATGTGGCTGA+TGG | + | chr2_3:9016868-9016887 | Msa0276750:intron | 45.0% |
| ATGTGGCTGATGGAAGAAAG+AGG | + | chr2_3:9016878-9016897 | Msa0276750:intron | 45.0% | |
| TGTGGCTGATGGAAGAAAGA+GGG | + | chr2_3:9016879-9016898 | Msa0276750:intron | 45.0% | |
| !! | TTTGGCCTTTTAAGCCCAAG+AGG | + | chr2_3:9016945-9016964 | Msa0276750:intron | 45.0% |
| CAACACGAAACTGGGATAGT+GGG | - | chr2_3:9017025-9017044 | None:intergenic | 45.0% | |
| GAACTTCAAGCACCTGTGAA+TGG | + | chr2_3:9017288-9017307 | Msa0276750:intron | 45.0% | |
| !! | CATTTCCTTTTGAAGGGTCC+TGG | - | chr2_3:9017540-9017559 | None:intergenic | 45.0% |
| TTCAACCAAGCTAGGCAACT+TGG | + | chr2_3:9017574-9017593 | Msa0276750:CDS | 45.0% | |
| !! | GTAAAGCTTGTTGACCTTGG+AGG | - | chr2_3:9017634-9017653 | None:intergenic | 45.0% |
| !! | CCAGTAAAGCTTGTTGACCT+TGG | - | chr2_3:9017637-9017656 | None:intergenic | 45.0% |
| CCAAGGTCAACAAGCTTTAC+TGG | + | chr2_3:9017634-9017653 | Msa0276750:intron | 45.0% | |
| CCTCAAAGGTCCGTCATTTA+CGG | - | chr2_3:9017761-9017780 | None:intergenic | 45.0% | |
| GGATCATCCAATCTCCTCAA+AGG | - | chr2_3:9017775-9017794 | None:intergenic | 45.0% | |
| AGAATGCCCTGATATGTGTG+TGG | + | chr2_3:9018069-9018088 | Msa0276750:intron | 45.0% | |
| GAATGCCCTGATATGTGTGT+GGG | + | chr2_3:9018070-9018089 | Msa0276750:intron | 45.0% | |
| !! | AGCTGTTTTCACGGAGCTTA+TGG | - | chr2_3:9018427-9018446 | None:intergenic | 45.0% |
| AATGAAGCTTGGCTCCTTTC+CGG | - | chr2_3:9018650-9018669 | None:intergenic | 45.0% | |
| AAGGAGCCAAGCTTCATTTC+AGG | + | chr2_3:9018652-9018671 | Msa0276750:CDS | 45.0% | |
| AGGAGCCAAGCTTCATTTCA+GGG | + | chr2_3:9018653-9018672 | Msa0276750:CDS | 45.0% | |
| CAAGCTTCATTTCAGGGAGT+GGG | + | chr2_3:9018659-9018678 | Msa0276750:CDS | 45.0% | |
| ! | AGCTAGCCTGAGTTGTATTG+AGG | - | chr2_3:9018807-9018826 | None:intergenic | 45.0% |
| ! | ATACAACTCAGGCTAGCTGA+TGG | + | chr2_3:9018809-9018828 | Msa0276750:CDS | 45.0% |
| AGGTCTAGACGCATCAATGA+AGG | - | chr2_3:9018888-9018907 | None:intergenic | 45.0% | |
| TTCATTGATGCGTCTAGACC+TGG | + | chr2_3:9018887-9018906 | Msa0276750:CDS | 45.0% | |
| TCATTGATGCGTCTAGACCT+GGG | + | chr2_3:9018888-9018907 | Msa0276750:CDS | 45.0% | |
| TCTCATCAGCCAGAACCTTT+GGG | - | chr2_3:9018952-9018971 | None:intergenic | 45.0% | |
| ACACAGACTATAGAGCAAGC+AGG | + | chr2_3:9018971-9018990 | Msa0276750:CDS | 45.0% | |
| GACTATAGAGCAAGCAGGAT+TGG | + | chr2_3:9018976-9018995 | Msa0276750:CDS | 45.0% | |
| AGATATTCCCTCAAAGCAGG+GGG | - | chr2_3:9019108-9019127 | None:intergenic | 45.0% | |
| AGCAGATGGTCGGTTGAGAT+CGG | - | chr2_3:9015052-9015071 | None:intergenic | 50.0% | |
| TCGCTATCGGAATCAGCAGA+TGG | - | chr2_3:9015066-9015085 | None:intergenic | 50.0% | |
| !! | GGTCCTCAGGAGTATTACAC+CGG | + | chr2_3:9015093-9015112 | Msa0276750:CDS | 50.0% |
| GTCGTGTCGAACAGATATCC+AGG | - | chr2_3:9015590-9015609 | None:intergenic | 50.0% | |
| GCTGCTCTTCCTTGGTCTAA+TGG | + | chr2_3:9016151-9016170 | Msa0276750:intron | 50.0% | |
| TACTCCAATTAGCTGGAGCC+TGG | + | chr2_3:9016482-9016501 | Msa0276750:intron | 50.0% | |
| TCCACTGCAACTCTGAACAC+AGG | + | chr2_3:9016595-9016614 | Msa0276750:intron | 50.0% | |
| ACCTGTGTTCAGAGTTGCAG+TGG | - | chr2_3:9016599-9016618 | None:intergenic | 50.0% | |
| CTGTGGCCGTAAAATGTCTG+TGG | - | chr2_3:9016685-9016704 | None:intergenic | 50.0% | |
| ! | GACATTTTACGGCCACAGTC+TGG | + | chr2_3:9016687-9016706 | Msa0276750:intron | 50.0% |
| GTGGCTGATGGAAGAAAGAG+GGG | + | chr2_3:9016880-9016899 | Msa0276750:intron | 50.0% | |
| TGGCTGATGGAAGAAAGAGG+GGG | + | chr2_3:9016881-9016900 | Msa0276750:intron | 50.0% | |
| CAAACTCCCTCTCACCCAAA+TGG | - | chr2_3:9016929-9016948 | None:intergenic | 50.0% | |
| CATTTGGGTGAGAGGGAGTT+TGG | + | chr2_3:9016927-9016946 | Msa0276750:intron | 50.0% | |
| !! | ACGAAACTGGGATAGTGGGA+TGG | - | chr2_3:9017021-9017040 | None:intergenic | 50.0% |
| CCAACACGAAACTGGGATAG+TGG | - | chr2_3:9017026-9017045 | None:intergenic | 50.0% | |
| CCACTATCCCAGTTTCGTGT+TGG | + | chr2_3:9017023-9017042 | Msa0276750:intron | 50.0% | |
| GAGATTGGCAAGGTAGTACC+AGG | + | chr2_3:9017065-9017084 | Msa0276750:intron | 50.0% | |
| CTTGTCCAGGACCCTTCAAA+AGG | + | chr2_3:9017532-9017551 | Msa0276750:CDS | 50.0% | |
| GGCAACTTGGAGCTGTAGAA+AGG | + | chr2_3:9017587-9017606 | Msa0276750:CDS | 50.0% | |
| ATCAGCTTCAGGAACCTCCA+AGG | + | chr2_3:9017617-9017636 | Msa0276750:CDS | 50.0% | |
| CAAGCTTTACTGGAACTGGC+AGG | + | chr2_3:9017644-9017663 | Msa0276750:intron | 50.0% | |
| TGGAACTGGCAGGTTACTCT+CGG | + | chr2_3:9017654-9017673 | Msa0276750:intron | 50.0% | |
| !! | CCGTAAATGACGGACCTTTG+AGG | + | chr2_3:9017758-9017777 | Msa0276750:CDS | 50.0% |
| ! | TGACGGACCTTTGAGGAGAT+TGG | + | chr2_3:9017765-9017784 | Msa0276750:CDS | 50.0% |
| CATAGCAACAGGAACCGGAA+AGG | + | chr2_3:9018633-9018652 | Msa0276750:intron | 50.0% | |
| CCACTCCCTGAAATGAAGCT+TGG | - | chr2_3:9018661-9018680 | None:intergenic | 50.0% | |
| CCAAGCTTCATTTCAGGGAG+TGG | + | chr2_3:9018658-9018677 | Msa0276750:CDS | 50.0% | |
| GTCGAGGCAACATTTGTCTC+AGG | - | chr2_3:9018719-9018738 | None:intergenic | 50.0% | |
| AACCACGAGACCAGTAGAAG+GGG | - | chr2_3:9018765-9018784 | None:intergenic | 50.0% | |
| CAACCACGAGACCAGTAGAA+GGG | - | chr2_3:9018766-9018785 | None:intergenic | 50.0% | |
| TCAACCACGAGACCAGTAGA+AGG | - | chr2_3:9018767-9018786 | None:intergenic | 50.0% | |
| TAGACGCATCAATGAAGGCG+CGG | - | chr2_3:9018883-9018902 | None:intergenic | 50.0% | |
| CATTGATGCGTCTAGACCTG+GGG | + | chr2_3:9018889-9018908 | Msa0276750:CDS | 50.0% | |
| ATTGATGCGTCTAGACCTGG+GGG | + | chr2_3:9018890-9018909 | Msa0276750:CDS | 50.0% | |
| TCATCAGCCAGAACCTTTGG+GGG | - | chr2_3:9018950-9018969 | None:intergenic | 50.0% | |
| CTCATCAGCCAGAACCTTTG+GGG | - | chr2_3:9018951-9018970 | None:intergenic | 50.0% | |
| GTCTCATCAGCCAGAACCTT+TGG | - | chr2_3:9018953-9018972 | None:intergenic | 50.0% | |
| ATATTCCCTCAAAGCAGGGG+GGG | - | chr2_3:9019106-9019125 | None:intergenic | 50.0% | |
| GATATTCCCTCAAAGCAGGG+GGG | - | chr2_3:9019107-9019126 | None:intergenic | 50.0% | |
| TCTGTTGGGTGGCTTAGCTT+TGG | + | chr2_3:9019174-9019193 | Msa0276750:three_prime_UTR | 50.0% | |
| TGCCGTGTCTTCGTAATGAC+TGG | + | chr2_3:9019253-9019272 | Msa0276750:three_prime_UTR | 50.0% | |
| ! | AAGGCATCAAGCAGTCGAGC+TGG | + | chr2_3:9015009-9015028 | Msa0276750:CDS | 55.0% |
| GATTCCGATAGCGACTCCGA+TGG | + | chr2_3:9015072-9015091 | Msa0276750:CDS | 55.0% | |
| AGGACCATCGGAGTCGCTAT+CGG | - | chr2_3:9015079-9015098 | None:intergenic | 55.0% | |
| !! | CCTCAGGAGTATTACACCGG+CGG | + | chr2_3:9015096-9015115 | Msa0276750:CDS | 55.0% |
| TCCTCAGATTAGGCGTGTCC+TGG | + | chr2_3:9015569-9015588 | Msa0276750:intron | 55.0% | |
| TCCAGGACACGCCTAATCTG+AGG | - | chr2_3:9015573-9015592 | None:intergenic | 55.0% | |
| ACCAAGGAAGAGCAGCGAGT+GGG | - | chr2_3:9016147-9016166 | None:intergenic | 55.0% | |
| CAAGCCAGGCTCCAGCTAAT+TGG | - | chr2_3:9016489-9016508 | None:intergenic | 55.0% | |
| ACGCGTTCTTGCACCGCTAT+TGG | - | chr2_3:9016554-9016573 | None:intergenic | 55.0% | |
| AATAGCGGTGCAAGAACGCG+TGG | + | chr2_3:9016553-9016572 | Msa0276750:intron | 55.0% | |
| AGTTGCAGTGGATCCCTCCA+GGG | - | chr2_3:9016587-9016606 | None:intergenic | 55.0% | |
| GCCACAGTCTGGTGTCTACA+GGG | + | chr2_3:9016698-9016717 | Msa0276750:intron | 55.0% | |
| CCACAGTCTGGTGTCTACAG+GGG | + | chr2_3:9016699-9016718 | Msa0276750:intron | 55.0% | |
| GAAAAGGAGGACAGCAACGG+CGG | + | chr2_3:9016812-9016831 | Msa0276750:intron | 55.0% | |
| GATGGAAGAAAGAGGGGGCT+AGG | + | chr2_3:9016886-9016905 | Msa0276750:intron | 55.0% | |
| GTAGCGGCCAACACGAAACT+GGG | - | chr2_3:9017033-9017052 | None:intergenic | 55.0% | |
| TGTAGCGGCCAACACGAAAC+TGG | - | chr2_3:9017034-9017053 | None:intergenic | 55.0% | |
| CTCCAGTGGAATGCTTGTCC+AGG | + | chr2_3:9017519-9017538 | Msa0276750:intron | 55.0% | |
| GTCCTGGACAAGCATTCCAC+TGG | - | chr2_3:9017524-9017543 | None:intergenic | 55.0% | |
| CAGCTCCAAGTTGCCTAGCT+TGG | - | chr2_3:9017582-9017601 | None:intergenic | 55.0% | |
| TGGAGCTGTAGAAAGGCCTC+TGG | + | chr2_3:9017594-9017613 | Msa0276750:CDS | 55.0% | |
| AAGGCCTCTGGATCAGCTTC+AGG | + | chr2_3:9017606-9017625 | Msa0276750:CDS | 55.0% | |
| GGTTCCTGAAGCTGATCCAG+AGG | - | chr2_3:9017613-9017632 | None:intergenic | 55.0% | |
| GGAACTGGCAGGTTACTCTC+GGG | + | chr2_3:9017655-9017674 | Msa0276750:intron | 55.0% | |
| GAACTGGCAGGTTACTCTCG+GGG | + | chr2_3:9017656-9017675 | Msa0276750:intron | 55.0% | |
| AACTGGCAGGTTACTCTCGG+GGG | + | chr2_3:9017657-9017676 | Msa0276750:intron | 55.0% | |
| TCTGCAGGCTCAAGCTCCTT+GGG | - | chr2_3:9018189-9018208 | None:intergenic | 55.0% | |
| ATCTGCAGGCTCAAGCTCCT+TGG | - | chr2_3:9018190-9018209 | None:intergenic | 55.0% | |
| AGGAGCTTGAGCCTGCAGAT+AGG | + | chr2_3:9018190-9018209 | Msa0276750:CDS | 55.0% | |
| AGCTTGAGCCTGCAGATAGG+AGG | + | chr2_3:9018193-9018212 | Msa0276750:CDS | 55.0% | |
| ACAGCTGACCTCCTATCTGC+AGG | - | chr2_3:9018204-9018223 | None:intergenic | 55.0% | |
| CAGGGAGTGGGAAGAACACT+TGG | + | chr2_3:9018671-9018690 | Msa0276750:CDS | 55.0% | |
| TGGAAGCAGTTCGGCTTCGA+TGG | + | chr2_3:9018691-9018710 | Msa0276750:CDS | 55.0% | |
| AGTAGAAGGGGTTGGAGCTG+AGG | - | chr2_3:9018753-9018772 | None:intergenic | 55.0% | |
| TCAGCTCCAACCCCTTCTAC+TGG | + | chr2_3:9018752-9018771 | Msa0276750:CDS | 55.0% | |
| ACGAGACCAGTAGAAGGGGT+TGG | - | chr2_3:9018761-9018780 | None:intergenic | 55.0% | |
| ! | AACCCCTTCTACTGGTCTCG+TGG | + | chr2_3:9018760-9018779 | Msa0276750:CDS | 55.0% |
| !! | TGATAGTTTTGCCGACCCCC+AGG | - | chr2_3:9018908-9018927 | None:intergenic | 55.0% |
| CATCAGCCAGAACCTTTGGG+GGG | - | chr2_3:9018949-9018968 | None:intergenic | 55.0% | |
| GGCGTCACGGGACAACAAGA+AGG | + | chr2_3:9014990-9015009 | Msa0276750:CDS | 60.0% | |
| TAGCGACTCCGATGGTCCTC+AGG | + | chr2_3:9015080-9015099 | Msa0276750:CDS | 60.0% | |
| CCGCCGGTGTAATACTCCTG+AGG | - | chr2_3:9015099-9015118 | None:intergenic | 60.0% | |
| AAGGAAGAGCAGCGAGTGGG+GGG | - | chr2_3:9016144-9016163 | None:intergenic | 60.0% | |
| CAAGGAAGAGCAGCGAGTGG+GGG | - | chr2_3:9016145-9016164 | None:intergenic | 60.0% | |
| CCAAGGAAGAGCAGCGAGTG+GGG | - | chr2_3:9016146-9016165 | None:intergenic | 60.0% | |
| GACCAAGGAAGAGCAGCGAG+TGG | - | chr2_3:9016148-9016167 | None:intergenic | 60.0% | |
| GGTGCAAGAACGCGTGGTTG+CGG | + | chr2_3:9016559-9016578 | Msa0276750:intron | 60.0% | |
| GAGTTGCAGTGGATCCCTCC+AGG | - | chr2_3:9016588-9016607 | None:intergenic | 60.0% | |
| GGCCACAGTCTGGTGTCTAC+AGG | + | chr2_3:9016697-9016716 | Msa0276750:intron | 60.0% | |
| CCCCTGTAGACACCAGACTG+TGG | - | chr2_3:9016702-9016721 | None:intergenic | 60.0% | |
| CTGCAGGCTCAAGCTCCTTG+GGG | - | chr2_3:9018188-9018207 | None:intergenic | 60.0% | |
| GAAGGGGTTGGAGCTGAGGT+GGG | - | chr2_3:9018749-9018768 | None:intergenic | 60.0% | |
| AGAAGGGGTTGGAGCTGAGG+TGG | - | chr2_3:9018750-9018769 | None:intergenic | 60.0% | |
| CGCGGATGTCGCCAATTGTG+TGG | - | chr2_3:9018865-9018884 | None:intergenic | 60.0% | |
| ATGCGTCTAGACCTGGGGGT+CGG | + | chr2_3:9018894-9018913 | Msa0276750:CDS | 60.0% | |
| !! | GATGATGGGGTTCCCCCCAA+AGG | + | chr2_3:9018934-9018953 | Msa0276750:CDS | 60.0% |
| AGGAAACCCCCCCTGCTTTG+AGG | + | chr2_3:9019097-9019116 | Msa0276750:three_prime_UTR | 60.0% | |
| GGAAACCCCCCCTGCTTTGA+GGG | + | chr2_3:9019098-9019117 | Msa0276750:three_prime_UTR | 60.0% | |
| CCCCACTCGCTGCTCTTCCT+TGG | + | chr2_3:9016143-9016162 | Msa0276750:intron | 65.0% | |
| !! | TGAGGTGGGAGGCGTTGTCG+AGG | - | chr2_3:9018735-9018754 | None:intergenic | 65.0% |
| GGGGTTCCCCCCAAAGGTTC+TGG | + | chr2_3:9018940-9018959 | Msa0276750:CDS | 65.0% | |
| AACGCGTGGTTGCGGAGCCC+TGG | + | chr2_3:9016567-9016586 | Msa0276750:intron | 70.0% | |
| CGTGGTTGCGGAGCCCTGGA+GGG | + | chr2_3:9016571-9016590 | Msa0276750:intron | 70.0% | |
| GGGGTTGGAGCTGAGGTGGG+AGG | - | chr2_3:9018746-9018765 | None:intergenic | 70.0% | |
| GCGTGGTTGCGGAGCCCTGG+AGG | + | chr2_3:9016570-9016589 | Msa0276750:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 9014949 | 9019327 | 9014949 | ID=Msa0276750;Name=Msa0276750 |
| chr2_3 | mRNA | 9014949 | 9019327 | 9014949 | ID=Msa0276750-mRNA-1;Parent=Msa0276750;Name=Msa0276750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=39|0.75|0.6|1|0.75|0.6|5|300|294 |
| chr2_3 | exon | 9014949 | 9015127 | 9014949 | ID=Msa0276750-mRNA-1:exon:4121;Parent=Msa0276750-mRNA-1 |
| chr2_3 | exon | 9017525 | 9017638 | 9017525 | ID=Msa0276750-mRNA-1:exon:4122;Parent=Msa0276750-mRNA-1 |
| chr2_3 | exon | 9017666 | 9017816 | 9017666 | ID=Msa0276750-mRNA-1:exon:4123;Parent=Msa0276750-mRNA-1 |
| chr2_3 | exon | 9018165 | 9018260 | 9018165 | ID=Msa0276750-mRNA-1:exon:4124;Parent=Msa0276750-mRNA-1 |
| chr2_3 | exon | 9018644 | 9019327 | 9018644 | ID=Msa0276750-mRNA-1:exon:4125;Parent=Msa0276750-mRNA-1 |
| chr2_3 | five_prime_UTR | 9014949 | 9014987 | 9014949 | ID=Msa0276750-mRNA-1:five_prime_utr;Parent=Msa0276750-mRNA-1 |
| chr2_3 | CDS | 9014988 | 9015127 | 9014988 | ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1 |
| chr2_3 | CDS | 9017525 | 9017638 | 9017525 | ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1 |
| chr2_3 | CDS | 9017666 | 9017816 | 9017666 | ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1 |
| chr2_3 | CDS | 9018165 | 9018260 | 9018165 | ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1 |
| chr2_3 | CDS | 9018644 | 9019027 | 9018644 | ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1 |
| chr2_3 | three_prime_UTR | 9019028 | 9019327 | 9019028 | ID=Msa0276750-mRNA-1:three_prime_utr;Parent=Msa0276750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
