AlfalfaGEDB | Msa0276750

M. sativa cultivar zhongmu-4 / Msa0276750

KEGG: K14012
GO: GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037
PFAM: PF08059.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276750	XP_013462901.1	96.040	303	3	1	1	294	1	303	0.0	588

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276750	sp\|Q8RWU7\|PUX4_ARATH	67.419	310	78	7	1	294	1	303	2.87e-129	372

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276750	I3T3U9	96.040	303	3	1	1	294	1	303	0.0	588

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015670	Msa0276750	-0.819179	1.330761e-52	-8.615850e-47
Msa0039250	Msa0276750	-0.802338	5.881698e-49	-8.615850e-47
Msa0133720	Msa0276750	-0.803040	4.214481e-49	-8.615850e-47
Msa0197110	Msa0276750	0.988819	1.548749e-175	-8.615850e-47
Msa0276750	Msa0316690	0.991712	4.004673e-189	-8.615850e-47
Msa0276750	Msa0379710	-0.800812	1.209172e-48	-8.615850e-47
Msa0276750	Msa0747650	-0.800285	1.548106e-48	-8.615850e-47
Msa0276750	Msa0750250	-0.801282	9.692697e-49	-8.615850e-47
Msa0276750	Msa1010070	-0.804546	2.051448e-49	-8.615850e-47
Msa0276750	Msa1138320	-0.803311	3.704383e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276750	MtrunA17_Chr2g0289211	96.040	303	3	1	1	294	1	303	0.0	588
Msa0276750	MtrunA17_Chr5g0439401	62.081	298	98	7	7	293	128	421	1.14e-118	347

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276750	AT4G04210.1	67.419	310	78	7	1	294	1	303	2.91e-130	372
Msa0276750	AT4G22150.1	64.379	306	93	6	1	294	1	302	3.26e-124	357
Msa0276750	AT4G15410.1	56.757	296	115	5	10	294	128	421	1.51e-104	311
Msa0276750	AT3G21660.2	44.206	233	104	7	67	294	227	438	7.70e-51	173
Msa0276750	AT3G21660.2	35.079	191	73	10	3	192	84	224	2.05e-13	70.5
Msa0276750	AT3G21660.1	40.773	233	109	6	67	294	227	435	8.79e-43	152
Msa0276750	AT3G21660.1	35.079	191	73	10	3	192	84	224	1.84e-13	70.5

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Find 106 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATCAACTTCAGATGA+TGG	0.472909	2_3:+9018919	Msa0276750:CDS
AACCACGAGACCAGTAGAAG+GGG	0.651448	2_3:-9018762	None:intergenic
AACCCCTTCTACTGGTCTCG+TGG	0.592080	2_3:+9018760	Msa0276750:CDS
AACTATCAACTTCAGATGAT+GGG	0.469653	2_3:+9018920	Msa0276750:CDS
AACTGGCAGGTTACTCTCGG+GGG	0.645658	2_3:+9017657	Msa0276750:intron
AAGAACACTTGGAAGCAGTT+CGG	0.502793	2_3:+9018682	Msa0276750:CDS
AAGATATTCCCTCAAAGCAG+GGG	0.642574	2_3:-9019106	None:intergenic
AAGGAGCCAAGCTTCATTTC+AGG	0.277223	2_3:+9018652	Msa0276750:CDS
AAGGCATCAAGCAGTCGAGC+TGG	0.506928	2_3:+9015009	Msa0276750:CDS
AAGGCCTCTGGATCAGCTTC+AGG	0.375933	2_3:+9017606	Msa0276750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGATAAGAGTAAGGTAAA+AGG	-	chr2_3:9015479-9015498	None:intergenic	30.0%
ATTGAACCAAGATAAGAGTA+AGG	-	chr2_3:9015486-9015505	None:intergenic	30.0%
TAACCACTATTCTATATTCG+AGG	-	chr2_3:9015853-9015872	None:intergenic	30.0%
AAAGAGAAAACAAGAAAAGG+AGG	+	chr2_3:9016799-9016818	Msa0276750:intron	30.0%
ACCCAAATGGCATAAAAATA+GGG	-	chr2_3:9016916-9016935	None:intergenic	30.0%
GATGTACTTATTTAATCGAC+AGG	-	chr2_3:9017390-9017409	None:intergenic	30.0%
AATCTATATTCAGGGAACAA+TGG	+	chr2_3:9017925-9017944	Msa0276750:intron	30.0%
GGGAAAATATACTTTCTTCA+TGG	+	chr2_3:9018090-9018109	Msa0276750:intron	30.0%
TTTCTTCATGGTTATATCGA+TGG	+	chr2_3:9018102-9018121	Msa0276750:intron	30.0%
AATGCTCTGCATTCAAAAAT+AGG	-	chr2_3:9018151-9018170	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	9014949	9019327	9014949	ID=Msa0276750;Name=Msa0276750
chr2_3	mRNA	9014949	9019327	9014949	ID=Msa0276750-mRNA-1;Parent=Msa0276750;Name=Msa0276750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=39\|0.75\|0.6\|1\|0.75\|0.6\|5\|300\|294
chr2_3	exon	9014949	9015127	9014949	ID=Msa0276750-mRNA-1:exon:4121;Parent=Msa0276750-mRNA-1
chr2_3	exon	9017525	9017638	9017525	ID=Msa0276750-mRNA-1:exon:4122;Parent=Msa0276750-mRNA-1
chr2_3	exon	9017666	9017816	9017666	ID=Msa0276750-mRNA-1:exon:4123;Parent=Msa0276750-mRNA-1
chr2_3	exon	9018165	9018260	9018165	ID=Msa0276750-mRNA-1:exon:4124;Parent=Msa0276750-mRNA-1
chr2_3	exon	9018644	9019327	9018644	ID=Msa0276750-mRNA-1:exon:4125;Parent=Msa0276750-mRNA-1
chr2_3	five_prime_UTR	9014949	9014987	9014949	ID=Msa0276750-mRNA-1:five_prime_utr;Parent=Msa0276750-mRNA-1
chr2_3	CDS	9014988	9015127	9014988	ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1
chr2_3	CDS	9017525	9017638	9017525	ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1
chr2_3	CDS	9017666	9017816	9017666	ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1
chr2_3	CDS	9018165	9018260	9018165	ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1
chr2_3	CDS	9018644	9019027	9018644	ID=Msa0276750-mRNA-1:cds;Parent=Msa0276750-mRNA-1
chr2_3	three_prime_UTR	9019028	9019327	9019028	ID=Msa0276750-mRNA-1:three_prime_utr;Parent=Msa0276750-mRNA-1

Gene Sequence

>Msa0276750

ATGGCGTCACGGGACAACAAGAAGGCATCAAGCAGTCGAGCTGGCAGAATTCGCACACTCTCCGATCTCAACCGACCATCTGCTGATTCCGATAGCGACTCCGATGGTCCTCAGGAGTATTACACCGGCGGTGAAAAAAGTGGAATGCTTGTCCAGGACCCTTCAAAAGGAAATGATGTGGATGCAATTTTCAACCAAGCTAGGCAACTTGGAGCTGTAGAAAGGCCTCTGGATCAGCTTCAGGAACCTCCAAGGTTACTCTCGGGGGATACTGTACCAACTGCTTCTAACTCTCAACAACCTGAGTCTGTTGTTCACAACATTGTTTTTTGGAGTAATGGTTTCACCGTAAATGACGGACCTTTGAGGAGATTGGATGATCCTGCAAATGCCTCATTTTTGGAGAGCATTAAAAAGTCTGAATGCCCCAAGGAGCTTGAGCCTGCAGATAGGAGGTCAGCTGTAAATGTAAACCTCATAAGAAGGAATGAGAACTATCGTGAACCGGAAAGGAGCCAAGCTTCATTTCAGGGAGTGGGAAGAACACTTGGAAGCAGTTCGGCTTCGATGGAACCTGAGACAAATGTTGCCTCGACAACGCCTCCCACCTCAGCTCCAACCCCTTCTACTGGTCTCGTGGTTGATCAGTCATTGCCATCAACCTCAATACAACTCAGGCTAGCTGATGGAACCCGCTTGATATCACATTTCAATCATCACCACACAATTGGCGACATCCGCGCCTTCATTGATGCGTCTAGACCTGGGGGTCGGCAAAACTATCAACTTCAGATGATGGGGTTCCCCCCAAAGGTTCTGGCTGATGAGACACAGACTATAGAGCAAGCAGGATTGGCAAATTCAGTTGTCATGCAGAAATTTTAG

Protein sequence

>Msa0276750

MASRDNKKASSSRAGRIRTLSDLNRPSADSDSDSDGPQEYYTGGEKSGMLVQDPSKGNDVDAIFNQARQLGAVERPLDQLQEPPRLLSGDTVPTASNSQQPESVVHNIVFWSNGFTVNDGPLRRLDDPANASFLESIKKSECPKELEPADRRSAVNVNLIRRNENYREPERSQASFQGVGRTLGSSSASMEPETNVASTTPPTSAPTPSTGLVVDQSLPSTSIQLRLADGTRLISHFNHHHTIGDIRAFIDASRPGGRQNYQLQMMGFPPKVLADETQTIEQAGLANSVVMQKF*