Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316690 | XP_013462901.1 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316690 | sp|Q8RWU7|PUX4_ARATH | 67.419 | 310 | 78 | 7 | 1 | 294 | 1 | 303 | 2.87e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015670 | Msa0316690 | -0.807017 | 6.206345e-50 | -8.615850e-47 |
| Msa0039250 | Msa0316690 | -0.805254 | 1.458817e-49 | -8.615850e-47 |
| Msa0133720 | Msa0316690 | -0.805025 | 1.629199e-49 | -8.615850e-47 |
| Msa0197110 | Msa0316690 | 0.998339 | 2.859161e-262 | -8.615850e-47 |
| Msa0276750 | Msa0316690 | 0.991712 | 4.004673e-189 | -8.615850e-47 |
| Msa0316690 | Msa1138320 | -0.804355 | 2.248255e-49 | -8.615850e-47 |
| Msa0316690 | Msa1252850 | 0.807697 | 4.452922e-50 | -8.615850e-47 |
| Msa0316690 | Msa1340040 | 0.801777 | 7.673560e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316690 | MtrunA17_Chr2g0289211 | 96.040 | 303 | 3 | 1 | 1 | 294 | 1 | 303 | 0.0 | 588 |
| Msa0316690 | MtrunA17_Chr5g0439401 | 62.081 | 298 | 98 | 7 | 7 | 293 | 128 | 421 | 1.14e-118 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316690 | AT4G04210.1 | 67.419 | 310 | 78 | 7 | 1 | 294 | 1 | 303 | 2.91e-130 | 372 |
| Msa0316690 | AT4G22150.1 | 64.379 | 306 | 93 | 6 | 1 | 294 | 1 | 302 | 3.26e-124 | 357 |
| Msa0316690 | AT4G15410.1 | 56.757 | 296 | 115 | 5 | 10 | 294 | 128 | 421 | 1.51e-104 | 311 |
| Msa0316690 | AT3G21660.2 | 44.206 | 233 | 104 | 7 | 67 | 294 | 227 | 438 | 7.70e-51 | 173 |
| Msa0316690 | AT3G21660.2 | 35.079 | 191 | 73 | 10 | 3 | 192 | 84 | 224 | 2.05e-13 | 70.5 |
| Msa0316690 | AT3G21660.1 | 40.773 | 233 | 109 | 6 | 67 | 294 | 227 | 435 | 8.79e-43 | 152 |
| Msa0316690 | AT3G21660.1 | 35.079 | 191 | 73 | 10 | 3 | 192 | 84 | 224 | 1.84e-13 | 70.5 |
Find 106 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGACTGGATTTGATATT+TGG | 0.088572 | 2_4:+13892098 | Msa0316690:three_prime_UTR |
| AATGAAGCTTGGCTCCTTTC+CGG | 0.204643 | 2_4:-13891479 | None:intergenic |
| GTCTCATCAGCCAGAACCTT+TGG | 0.275592 | 2_4:-13891782 | None:intergenic |
| AAGGAGCCAAGCTTCATTTC+AGG | 0.277223 | 2_4:+13891484 | Msa0316690:CDS |
| TCTGCAGGCTCAAGCTCCTT+GGG | 0.307863 | 2_4:-13891018 | None:intergenic |
| TCTCATCAGCCAGAACCTTT+GGG | 0.313071 | 2_4:-13891781 | None:intergenic |
| CCTCAAAGGTCCGTCATTTA+CGG | 0.320498 | 2_4:-13890588 | None:intergenic |
| TTCATTGATGCGTCTAGACC+TGG | 0.350120 | 2_4:+13891719 | Msa0316690:CDS |
| TGACGGACCTTTGAGGAGAT+TGG | 0.354213 | 2_4:+13890595 | Msa0316690:CDS |
| ATCTGCAGGCTCAAGCTCCT+TGG | 0.360805 | 2_4:-13891019 | None:intergenic |
| TCTGTTGGGTGGCTTAGCTT+TGG | 0.363956 | 2_4:+13892006 | Msa0316690:three_prime_UTR |
| AAGGCCTCTGGATCAGCTTC+AGG | 0.375933 | 2_4:+13890436 | Msa0316690:CDS |
| AATGACTGGATTTGATATTT+GGG | 0.392542 | 2_4:+13892099 | Msa0316690:three_prime_UTR |
| GTGCATAAATTACAAATGTA+AGG | 0.396174 | 2_4:-13892149 | None:intergenic |
| CTATTTGCATTAGATTCTGT+TGG | 0.397237 | 2_4:+13891991 | Msa0316690:three_prime_UTR |
| TTCAATCATCACCACACAAT+TGG | 0.397764 | 2_4:+13891683 | Msa0316690:CDS |
| GACTATAGAGCAAGCAGGAT+TGG | 0.411788 | 2_4:+13891808 | Msa0316690:CDS |
| CAGCTCCAAGTTGCCTAGCT+TGG | 0.415672 | 2_4:-13890409 | None:intergenic |
| TATTTGCATTAGATTCTGTT+GGG | 0.415990 | 2_4:+13891992 | Msa0316690:three_prime_UTR |
| TGGAACTGGCAGGTTACTCT+CGG | 0.422568 | 2_4:+13890484 | Msa0316690:intron |
| TTCAACCAAGCTAGGCAACT+TGG | 0.433347 | 2_4:+13890404 | Msa0316690:CDS |
| GTCGAGGCAACATTTGTCTC+AGG | 0.447502 | 2_4:-13891548 | None:intergenic |
| GTAAAGCTTGTTGACCTTGG+AGG | 0.463131 | 2_4:-13890461 | None:intergenic |
| GAAGGGGTTGGAGCTGAGGT+GGG | 0.464702 | 2_4:-13891578 | None:intergenic |
| AGAAGGGGTTGGAGCTGAGG+TGG | 0.467204 | 2_4:-13891579 | None:intergenic |
| AACTATCAACTTCAGATGAT+GGG | 0.469653 | 2_4:+13891752 | Msa0316690:CDS |
| AGTTCTCATTCCTTCTTATG+AGG | 0.470919 | 2_4:-13891065 | None:intergenic |
| AAACTATCAACTTCAGATGA+TGG | 0.472909 | 2_4:+13891751 | Msa0316690:CDS |
| CTGAGTTGTATTGAGGTTGA+TGG | 0.475950 | 2_4:-13891629 | None:intergenic |
| CCGTAAATGACGGACCTTTG+AGG | 0.482107 | 2_4:+13890588 | Msa0316690:CDS |
| TCAACCACGAGACCAGTAGA+AGG | 0.486622 | 2_4:-13891596 | None:intergenic |
| TGGAGCTGTAGAAAGGCCTC+TGG | 0.487117 | 2_4:+13890424 | Msa0316690:CDS |
| ATAAGATATTCCCTCAAAGC+AGG | 0.487982 | 2_4:-13891940 | None:intergenic |
| TCAGCTCCAACCCCTTCTAC+TGG | 0.490883 | 2_4:+13891584 | Msa0316690:CDS |
| CCAAGCTTCATTTCAGGGAG+TGG | 0.491290 | 2_4:+13891490 | Msa0316690:CDS |
| AGGAGCTTGAGCCTGCAGAT+AGG | 0.491570 | 2_4:+13891022 | Msa0316690:CDS |
| CTCCAGTGGAATGCTTGTCC+AGG | 0.494655 | 2_4:+13890349 | Msa0316690:intron |
| TGGAAGCAGTTCGGCTTCGA+TGG | 0.495383 | 2_4:+13891523 | Msa0316690:CDS |
| CAGGGAGTGGGAAGAACACT+TGG | 0.496077 | 2_4:+13891503 | Msa0316690:CDS |
| AAGAACACTTGGAAGCAGTT+CGG | 0.502793 | 2_4:+13891514 | Msa0316690:CDS |
| GGAACTGGCAGGTTACTCTC+GGG | 0.505832 | 2_4:+13890485 | Msa0316690:intron |
| TAGCGACTCCGATGGTCCTC+AGG | 0.506781 | 2_4:+13887905 | Msa0316690:CDS |
| AAGGCATCAAGCAGTCGAGC+TGG | 0.506928 | 2_4:+13887834 | Msa0316690:CDS |
| AGGACCATCGGAGTCGCTAT+CGG | 0.507164 | 2_4:-13887901 | None:intergenic |
| AGCTAGCCTGAGTTGTATTG+AGG | 0.511959 | 2_4:-13891636 | None:intergenic |
| TCATTGATGCGTCTAGACCT+GGG | 0.516883 | 2_4:+13891720 | Msa0316690:CDS |
| CTTGTCCAGGACCCTTCAAA+AGG | 0.517282 | 2_4:+13890362 | Msa0316690:CDS |
| AGGAGCCAAGCTTCATTTCA+GGG | 0.517684 | 2_4:+13891485 | Msa0316690:CDS |
| TGCCGTGTCTTCGTAATGAC+TGG | 0.519825 | 2_4:+13892085 | Msa0316690:three_prime_UTR |
| CCACTCCCTGAAATGAAGCT+TGG | 0.521336 | 2_4:-13891490 | None:intergenic |
| TGTTGAGAGTTAGAAGCAGT+TGG | 0.522165 | 2_4:-13890518 | None:intergenic |
| ACTGAAATCAATGGCGTCAC+GGG | 0.524471 | 2_4:+13887803 | Msa0316690:exon |
| TAAATGTAAACCTCATAAGA+AGG | 0.531231 | 2_4:+13891055 | Msa0316690:CDS |
| CAAGCTTCATTTCAGGGAGT+GGG | 0.535505 | 2_4:+13891491 | Msa0316690:CDS |
| GGCAACTTGGAGCTGTAGAA+AGG | 0.539850 | 2_4:+13890417 | Msa0316690:CDS |
| GGGGTTGGAGCTGAGGTGGG+AGG | 0.540439 | 2_4:-13891575 | None:intergenic |
| AGCAGATGGTCGGTTGAGAT+CGG | 0.544156 | 2_4:-13887874 | None:intergenic |
| ACAGCTGACCTCCTATCTGC+AGG | 0.544508 | 2_4:-13891033 | None:intergenic |
| TTGCATTAGATTCTGTTGGG+TGG | 0.551802 | 2_4:+13891995 | Msa0316690:three_prime_UTR |
| CTCATCAGCCAGAACCTTTG+GGG | 0.554088 | 2_4:-13891780 | None:intergenic |
| TACTGAAATCAATGGCGTCA+CGG | 0.555373 | 2_4:+13887802 | Msa0316690:exon |
| AGGTCTAGACGCATCAATGA+AGG | 0.558576 | 2_4:-13891717 | None:intergenic |
| TAAGATATTCCCTCAAAGCA+GGG | 0.561422 | 2_4:-13891939 | None:intergenic |
| GTAATACTCCTGAGGACCAT+CGG | 0.566845 | 2_4:-13887913 | None:intergenic |
| AGTAGAAGGGGTTGGAGCTG+AGG | 0.570531 | 2_4:-13891582 | None:intergenic |
| ATACAACTCAGGCTAGCTGA+TGG | 0.570857 | 2_4:+13891641 | Msa0316690:CDS |
| CATTGATGCGTCTAGACCTG+GGG | 0.576257 | 2_4:+13891721 | Msa0316690:CDS |
| CTGCAGGCTCAAGCTCCTTG+GGG | 0.579209 | 2_4:-13891017 | None:intergenic |
| CAACCACGAGACCAGTAGAA+GGG | 0.582379 | 2_4:-13891595 | None:intergenic |
| TGAGGTGGGAGGCGTTGTCG+AGG | 0.582939 | 2_4:-13891564 | None:intergenic |
| AGCTTGAGCCTGCAGATAGG+AGG | 0.585887 | 2_4:+13891025 | Msa0316690:CDS |
| TATCGGAATCAGCAGATGGT+CGG | 0.590803 | 2_4:-13887884 | None:intergenic |
| AACCCCTTCTACTGGTCTCG+TGG | 0.592080 | 2_4:+13891592 | Msa0316690:CDS |
| GGCGTCACGGGACAACAAGA+AGG | 0.599291 | 2_4:+13887815 | Msa0316690:CDS |
| ACGAGACCAGTAGAAGGGGT+TGG | 0.600210 | 2_4:-13891590 | None:intergenic |
| CCCTTCAAAAGGAAATGATG+TGG | 0.602839 | 2_4:+13890373 | Msa0316690:CDS |
| GGATCATCCAATCTCCTCAA+AGG | 0.604327 | 2_4:-13890602 | None:intergenic |
| TGCGAGAGTACTGAAATCAA+TGG | 0.604789 | 2_4:+13887794 | Msa0316690:exon |
| TCATCAGCCAGAACCTTTGG+GGG | 0.616171 | 2_4:-13891779 | None:intergenic |
| ATGTTGTGAACAACAGACTC+AGG | 0.616871 | 2_4:-13890542 | None:intergenic |
| ATTGAAATGTGATATCAAGC+GGG | 0.616914 | 2_4:-13891666 | None:intergenic |
| ATATTCCCTCAAAGCAGGGG+GGG | 0.619503 | 2_4:-13891935 | None:intergenic |
| CATCAACCTCAATACAACTC+AGG | 0.620565 | 2_4:+13891630 | Msa0316690:CDS |
| ATCAGCTTCAGGAACCTCCA+AGG | 0.625174 | 2_4:+13890447 | Msa0316690:CDS |
| GAACTGGCAGGTTACTCTCG+GGG | 0.628067 | 2_4:+13890486 | Msa0316690:intron |
| ACTATCAACTTCAGATGATG+GGG | 0.628203 | 2_4:+13891753 | Msa0316690:CDS |
| CATAGCAACAGGAACCGGAA+AGG | 0.630097 | 2_4:+13891465 | Msa0316690:intron |
| GGTTCCTGAAGCTGATCCAG+AGG | 0.630507 | 2_4:-13890440 | None:intergenic |
| TCGCTATCGGAATCAGCAGA+TGG | 0.630862 | 2_4:-13887888 | None:intergenic |
| AATGGTTTCACCGTAAATGA+CGG | 0.634127 | 2_4:+13890578 | Msa0316690:CDS |
| CGCGGATGTCGCCAATTGTG+TGG | 0.638335 | 2_4:-13891694 | None:intergenic |
| AGATATTCCCTCAAAGCAGG+GGG | 0.639026 | 2_4:-13891937 | None:intergenic |
| ACACAGACTATAGAGCAAGC+AGG | 0.640891 | 2_4:+13891803 | Msa0316690:CDS |
| AAGATATTCCCTCAAAGCAG+GGG | 0.642574 | 2_4:-13891938 | None:intergenic |
| AACTGGCAGGTTACTCTCGG+GGG | 0.645658 | 2_4:+13890487 | Msa0316690:intron |
| ATCCAGTCATTACGAAGACA+CGG | 0.646040 | 2_4:-13892087 | None:intergenic |
| AACCACGAGACCAGTAGAAG+GGG | 0.651448 | 2_4:-13891594 | None:intergenic |
| GATTCCGATAGCGACTCCGA+TGG | 0.657927 | 2_4:+13887897 | Msa0316690:CDS |
| GATTGAAATGTGATATCAAG+CGG | 0.665002 | 2_4:-13891667 | None:intergenic |
| TAGACGCATCAATGAAGGCG+CGG | 0.675628 | 2_4:-13891712 | None:intergenic |
| CCGCCGGTGTAATACTCCTG+AGG | 0.683141 | 2_4:-13887921 | None:intergenic |
| CCTCAGGAGTATTACACCGG+CGG | 0.689148 | 2_4:+13887921 | Msa0316690:CDS |
| GGTCCTCAGGAGTATTACAC+CGG | 0.689346 | 2_4:+13887918 | Msa0316690:CDS |
| CATCAGCCAGAACCTTTGGG+GGG | 0.692287 | 2_4:-13891778 | None:intergenic |
| ATTGATGCGTCTAGACCTGG+GGG | 0.697222 | 2_4:+13891722 | Msa0316690:CDS |
| GATATTCCCTCAAAGCAGGG+GGG | 0.707190 | 2_4:-13891936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATAGTTAATAATTTTTT+TGG | + | chr2_4:13888145-13888164 | Msa0316690:intron | 10.0% |
| !!! | ATTTTTCTCAAAATTATTTT+TGG | + | chr2_4:13888750-13888769 | Msa0316690:intron | 10.0% |
| !!! | TTTTTCTCAAAATTATTTTT+GGG | + | chr2_4:13888751-13888770 | Msa0316690:intron | 10.0% |
| !!! | ATTGTTTAAAATTTTAACTA+GGG | - | chr2_4:13889999-13890018 | None:intergenic | 10.0% |
| !!! | TATTGTTTAAAATTTTAACT+AGG | - | chr2_4:13890000-13890019 | None:intergenic | 10.0% |
| !!! | TTTATTGATTTTTAGACTTA+TGG | + | chr2_4:13888024-13888043 | Msa0316690:intron | 15.0% |
| !!! | TTATTGATTTTTAGACTTAT+GGG | + | chr2_4:13888025-13888044 | Msa0316690:intron | 15.0% |
| !! | TCATGTTCTTAAATTATTAT+CGG | + | chr2_4:13888462-13888481 | Msa0316690:intron | 15.0% |
| !!! | AGTTTTTTTAATCTATATTC+AGG | + | chr2_4:13890746-13890765 | Msa0316690:intron | 15.0% |
| !!! | GTTTTTTTAATCTATATTCA+GGG | + | chr2_4:13890747-13890766 | Msa0316690:intron | 15.0% |
| !! | AATGATAAACAAAAACAAAT+AGG | + | chr2_4:13891909-13891928 | Msa0316690:three_prime_UTR | 15.0% |
| !! | AAAATCAATAAAACACTGAA+AGG | - | chr2_4:13888016-13888035 | None:intergenic | 20.0% |
| !! | ACTAATATAATTGCAACTAT+AGG | + | chr2_4:13888532-13888551 | Msa0316690:intron | 20.0% |
| !!! | TCGCTAATAAGTTTTAAAAA+GGG | - | chr2_4:13888598-13888617 | None:intergenic | 20.0% |
| !!! | ATCGCTAATAAGTTTTAAAA+AGG | - | chr2_4:13888599-13888618 | None:intergenic | 20.0% |
| !! | GATTACAATTGAAACTTATT+AGG | + | chr2_4:13888616-13888635 | Msa0316690:intron | 20.0% |
| !!! | AACAAAGTTTTGTTAAATGA+CGG | - | chr2_4:13889189-13889208 | None:intergenic | 20.0% |
| !! | AATAAAGAGAAAACAAGAAA+AGG | + | chr2_4:13889626-13889645 | Msa0316690:intron | 20.0% |
| !! | AACAATGGTAATTAAATGAA+TGG | - | chr2_4:13889942-13889961 | None:intergenic | 20.0% |
| !!! | TTAAAATTTTAACTAGGGAA+TGG | - | chr2_4:13889994-13890013 | None:intergenic | 20.0% |
| !!! | TGATTTTGTACATTAAAAGT+TGG | + | chr2_4:13890175-13890194 | Msa0316690:intron | 20.0% |
| !! | TTCTTATTCTGTAAATAGTT+TGG | + | chr2_4:13890661-13890680 | Msa0316690:intron | 20.0% |
| !!! | TGTAAGTAAATTTTCTCTAA+TGG | + | chr2_4:13890820-13890839 | Msa0316690:intron | 20.0% |
| !!! | ACTTGTTATTTATTGTACAT+TGG | - | chr2_4:13891438-13891457 | None:intergenic | 20.0% |
| !!! | AAGTTGAGTTTTTTACAAGA+TGG | - | chr2_4:13887986-13888005 | None:intergenic | 25.0% |
| !! | AAACCAATTTTGCAAAACAA+TGG | - | chr2_4:13888245-13888264 | None:intergenic | 25.0% |
| !! | TTTGCAAAATTGGTTTCTAT+TGG | + | chr2_4:13888249-13888268 | Msa0316690:intron | 25.0% |
| ! | AAGATAAGAGTAAGGTAAAA+GGG | - | chr2_4:13888307-13888326 | None:intergenic | 25.0% |
| ! | AAGAGTAACATGATTTCTAT+AGG | - | chr2_4:13888568-13888587 | None:intergenic | 25.0% |
| !!! | TTCTCAAAATTATTTTTGGG+TGG | + | chr2_4:13888754-13888773 | Msa0316690:intron | 25.0% |
| !!! | AGAGTTTTAAGGTAATATAG+TGG | + | chr2_4:13889096-13889115 | Msa0316690:intron | 25.0% |
| ! | TTGACAATTAGGCAATTAAA+TGG | + | chr2_4:13889343-13889362 | Msa0316690:intron | 25.0% |
| ! | AAATCAAACACTTTCAGTAA+AGG | - | chr2_4:13890161-13890180 | None:intergenic | 25.0% |
| ! | CTAAACATCGACATATTTAT+CGG | - | chr2_4:13890276-13890295 | None:intergenic | 25.0% |
| !!! | TTGTTCACAACATTGTTTTT+TGG | + | chr2_4:13890552-13890571 | Msa0316690:CDS | 25.0% |
| !!! | AACATTGTTTTTTGGAGTAA+TGG | + | chr2_4:13890560-13890579 | Msa0316690:CDS | 25.0% |
| ! | TTATTCTGTAAATAGTTTGG+AGG | + | chr2_4:13890664-13890683 | Msa0316690:intron | 25.0% |
| ! | TTTGGAGGTTAGAAAATATT+TGG | + | chr2_4:13890679-13890698 | Msa0316690:intron | 25.0% |
| ! | TTAAAAAAACTCGATCTTCT+AGG | - | chr2_4:13890737-13890756 | None:intergenic | 25.0% |
| !!! | TTATTTTGTAAGTTCACTGT+AGG | + | chr2_4:13890848-13890867 | Msa0316690:intron | 25.0% |
| ! | TAAATGTAAACCTCATAAGA+AGG | + | chr2_4:13891055-13891074 | Msa0316690:CDS | 25.0% |
| ! | GTTTGTATTTGTCCAATTTA+GGG | + | chr2_4:13891118-13891137 | Msa0316690:intron | 25.0% |
| !!! | TTTAACATAAGCTGTTTTCA+CGG | - | chr2_4:13891268-13891287 | None:intergenic | 25.0% |
| ! | ATTAAGATGTTTATCCAAAC+AGG | + | chr2_4:13891363-13891382 | Msa0316690:intron | 25.0% |
| ! | TTAAGATGTTTATCCAAACA+GGG | + | chr2_4:13891364-13891383 | Msa0316690:intron | 25.0% |
| ! | TATTTGCATTAGATTCTGTT+GGG | + | chr2_4:13891992-13892011 | Msa0316690:three_prime_UTR | 25.0% |
| ! | TAATGACTGGATTTGATATT+TGG | + | chr2_4:13892098-13892117 | Msa0316690:three_prime_UTR | 25.0% |
| ! | AATGACTGGATTTGATATTT+GGG | + | chr2_4:13892099-13892118 | Msa0316690:three_prime_UTR | 25.0% |
| ! | GTATTATACTTTTCGTGAGA+AGG | + | chr2_4:13888105-13888124 | Msa0316690:intron | 30.0% |
| TATGTGTGTGTGTAATTTGA+TGG | + | chr2_4:13888281-13888300 | Msa0316690:intron | 30.0% | |
| CAAGATAAGAGTAAGGTAAA+AGG | - | chr2_4:13888308-13888327 | None:intergenic | 30.0% | |
| ! | CTTTTACCTTACTCTTATCT+TGG | + | chr2_4:13888306-13888325 | Msa0316690:intron | 30.0% |
| ATTGAACCAAGATAAGAGTA+AGG | - | chr2_4:13888315-13888334 | None:intergenic | 30.0% | |
| TAACCACTATTCTATATTCG+AGG | - | chr2_4:13888682-13888701 | None:intergenic | 30.0% | |
| !! | TTTAAGGTAATATAGTGGAC+TGG | + | chr2_4:13889101-13889120 | Msa0316690:intron | 30.0% |
| !! | TTAAGGTAATATAGTGGACT+GGG | + | chr2_4:13889102-13889121 | Msa0316690:intron | 30.0% |
| ! | ATACACTATTTTGCCAATAG+CGG | + | chr2_4:13889368-13889387 | Msa0316690:intron | 30.0% |
| !!! | TTTTCTAGTTCTGGTGTTTT+TGG | + | chr2_4:13889552-13889571 | Msa0316690:intron | 30.0% |
| AAAGAGAAAACAAGAAAAGG+AGG | + | chr2_4:13889629-13889648 | Msa0316690:intron | 30.0% | |
| !!! | TTCCCTATTTTTATGCCATT+TGG | + | chr2_4:13889741-13889760 | Msa0316690:intron | 30.0% |
| !!! | TCCCTATTTTTATGCCATTT+GGG | + | chr2_4:13889742-13889761 | Msa0316690:intron | 30.0% |
| ACCCAAATGGCATAAAAATA+GGG | - | chr2_4:13889746-13889765 | None:intergenic | 30.0% | |
| GATGTACTTATTTAATCGAC+AGG | - | chr2_4:13890220-13890239 | None:intergenic | 30.0% | |
| !! | AGAAAATATTTGGAGTATCG+AGG | + | chr2_4:13890689-13890708 | Msa0316690:intron | 30.0% |
| AATCTATATTCAGGGAACAA+TGG | + | chr2_4:13890755-13890774 | Msa0316690:intron | 30.0% | |
| ! | TGGCTTTTATAATCTTGACA+AGG | + | chr2_4:13890871-13890890 | Msa0316690:intron | 30.0% |
| GGGAAAATATACTTTCTTCA+TGG | + | chr2_4:13890922-13890941 | Msa0316690:intron | 30.0% | |
| TTTCTTCATGGTTATATCGA+TGG | + | chr2_4:13890934-13890953 | Msa0316690:intron | 30.0% | |
| AATGCTCTGCATTCAAAAAT+AGG | - | chr2_4:13890983-13891002 | None:intergenic | 30.0% | |
| !! | AGTTTTCTGTTTGAGTTCTT+TGG | + | chr2_4:13891096-13891115 | Msa0316690:intron | 30.0% |
| GGTTTGTATTTGTCCAATTT+AGG | + | chr2_4:13891117-13891136 | Msa0316690:intron | 30.0% | |
| AATCCAAACAAACCCTAAAT+TGG | - | chr2_4:13891133-13891152 | None:intergenic | 30.0% | |
| TTTCATAGTAAAACCCTGTT+TGG | - | chr2_4:13891380-13891399 | None:intergenic | 30.0% | |
| ATGTGTGATAACAACAACAA+AGG | - | chr2_4:13891413-13891432 | None:intergenic | 30.0% | |
| ATTGAAATGTGATATCAAGC+GGG | - | chr2_4:13891669-13891688 | None:intergenic | 30.0% | |
| GATTGAAATGTGATATCAAG+CGG | - | chr2_4:13891670-13891689 | None:intergenic | 30.0% | |
| AAACTATCAACTTCAGATGA+TGG | + | chr2_4:13891751-13891770 | Msa0316690:CDS | 30.0% | |
| AACTATCAACTTCAGATGAT+GGG | + | chr2_4:13891752-13891771 | Msa0316690:CDS | 30.0% | |
| CTATTTGCATTAGATTCTGT+TGG | + | chr2_4:13891991-13892010 | Msa0316690:three_prime_UTR | 30.0% | |
| ! | TTATACTTTTCGTGAGAAGG+AGG | + | chr2_4:13888108-13888127 | Msa0316690:intron | 35.0% |
| ! | TGAGAGGTGTGAAACTTATT+AGG | + | chr2_4:13888216-13888235 | Msa0316690:intron | 35.0% |
| ! | GAGAGGTGTGAAACTTATTA+GGG | + | chr2_4:13888217-13888236 | Msa0316690:intron | 35.0% |
| !! | GCACCATTGTTTTGCAAAAT+TGG | + | chr2_4:13888239-13888258 | Msa0316690:intron | 35.0% |
| ATGAAATTCAGACTCAGACA+CGG | - | chr2_4:13888504-13888523 | None:intergenic | 35.0% | |
| CTTCCTCGAATATAGAATAG+TGG | + | chr2_4:13888676-13888695 | Msa0316690:intron | 35.0% | |
| AAGCACTCGAAACTTATCTT+AGG | + | chr2_4:13888777-13888796 | Msa0316690:intron | 35.0% | |
| AGCACTCGAAACTTATCTTA+GGG | + | chr2_4:13888778-13888797 | Msa0316690:intron | 35.0% | |
| ! | ATCTTCAAAACTAGTTTGCG+TGG | + | chr2_4:13888837-13888856 | Msa0316690:intron | 35.0% |
| ! | TCTTCAAAACTAGTTTGCGT+GGG | + | chr2_4:13888838-13888857 | Msa0316690:intron | 35.0% |
| !! | AAGTTGAGCTAGTTCTGAAT+AGG | - | chr2_4:13888874-13888893 | None:intergenic | 35.0% |
| !! | TAGCTCAACTTGTTAAAGAG+TGG | + | chr2_4:13888883-13888902 | Msa0316690:intron | 35.0% |
| !! | AGCTCAACTTGTTAAAGAGT+GGG | + | chr2_4:13888884-13888903 | Msa0316690:intron | 35.0% |
| AACACATTAAAGACGTCGAA+AGG | - | chr2_4:13889030-13889049 | None:intergenic | 35.0% | |
| CCTTAAAACTCTCCAACAAT+GGG | - | chr2_4:13889088-13889107 | None:intergenic | 35.0% | |
| ACCTTAAAACTCTCCAACAA+TGG | - | chr2_4:13889089-13889108 | None:intergenic | 35.0% | |
| CTGGGTAATAATGTTAATCG+TGG | + | chr2_4:13889120-13889139 | Msa0316690:intron | 35.0% | |
| AGTGTATCCTAGAACTATAG+AGG | + | chr2_4:13889219-13889238 | Msa0316690:intron | 35.0% | |
| GAACAAACCTCTATAGTTCT+AGG | - | chr2_4:13889229-13889248 | None:intergenic | 35.0% | |
| TAATTGTCAATTGTCAAGCC+AGG | - | chr2_4:13889333-13889352 | None:intergenic | 35.0% | |
| TGGCTTGACAATTGACAATT+AGG | + | chr2_4:13889332-13889351 | Msa0316690:intron | 35.0% | |
| !! | ACCACATTTGACTTGATTTG+TGG | - | chr2_4:13889483-13889502 | None:intergenic | 35.0% |
| GGTCAGAAAACATAAGATTG+TGG | - | chr2_4:13889578-13889597 | None:intergenic | 35.0% | |
| ! | ATCTTATGTTTTCTGACCTG+TGG | + | chr2_4:13889580-13889599 | Msa0316690:intron | 35.0% |
| ATTCAACACCAAGTAACACA+AGG | - | chr2_4:13889690-13889709 | None:intergenic | 35.0% | |
| CACCCAAATGGCATAAAAAT+AGG | - | chr2_4:13889747-13889766 | None:intergenic | 35.0% | |
| AGATTGTAGTGAAACCTCTT+GGG | - | chr2_4:13889792-13889811 | None:intergenic | 35.0% | |
| AAGATTGTAGTGAAACCTCT+TGG | - | chr2_4:13889793-13889812 | None:intergenic | 35.0% | |
| ! | TACACCTCTCTATTTGAGAT+TGG | + | chr2_4:13889880-13889899 | Msa0316690:intron | 35.0% |
| ACATCAGAAACATATCTTCC+TGG | - | chr2_4:13889916-13889935 | None:intergenic | 35.0% | |
| CCATTGTTACAGAGTAACAA+TGG | - | chr2_4:13889957-13889976 | None:intergenic | 35.0% | |
| CCATTGTTACTCTGTAACAA+TGG | + | chr2_4:13889954-13889973 | Msa0316690:intron | 35.0% | |
| TACTCTGTAACAATGGAAAC+AGG | + | chr2_4:13889961-13889980 | Msa0316690:intron | 35.0% | |
| AAGAAAGGAGTGAAATGGAA+TGG | - | chr2_4:13890054-13890073 | None:intergenic | 35.0% | |
| ! | CCACATCATTTCCTTTTGAA+GGG | - | chr2_4:13890376-13890395 | None:intergenic | 35.0% |
| ! | TCCACATCATTTCCTTTTGA+AGG | - | chr2_4:13890377-13890396 | None:intergenic | 35.0% |
| ! | ATGCAATTTTCAACCAAGCT+AGG | + | chr2_4:13890396-13890415 | Msa0316690:CDS | 35.0% |
| AATGGTTTCACCGTAAATGA+CGG | + | chr2_4:13890578-13890597 | Msa0316690:CDS | 35.0% | |
| ATACAGTACCTCCAAAAATG+AGG | - | chr2_4:13890636-13890655 | None:intergenic | 35.0% | |
| AAAAAACTCGATCTTCTAGG+AGG | - | chr2_4:13890734-13890753 | None:intergenic | 35.0% | |
| ! | TTTTGTAAGTTCACTGTAGG+TGG | + | chr2_4:13890851-13890870 | Msa0316690:intron | 35.0% |
| ! | ATTTTCCCACACACATATCA+GGG | - | chr2_4:13890910-13890929 | None:intergenic | 35.0% |
| ! | TATTTTCCCACACACATATC+AGG | - | chr2_4:13890911-13890930 | None:intergenic | 35.0% |
| AGTTCTCATTCCTTCTTATG+AGG | - | chr2_4:13891068-13891087 | None:intergenic | 35.0% | |
| ! | TGTCCAATTTAGGGTTTGTT+TGG | + | chr2_4:13891127-13891146 | Msa0316690:intron | 35.0% |
| AATAAGCTGAAAACAGCTTG+TGG | - | chr2_4:13891235-13891254 | None:intergenic | 35.0% | |
| TGATAACAACAACAAAGGAC+TGG | - | chr2_4:13891408-13891427 | None:intergenic | 35.0% | |
| AAGTGCTTTATCATAGCAAC+AGG | + | chr2_4:13891454-13891473 | Msa0316690:intron | 35.0% | |
| TTTATCATAGCAACAGGAAC+CGG | + | chr2_4:13891460-13891479 | Msa0316690:intron | 35.0% | |
| TTCAATCATCACCACACAAT+TGG | + | chr2_4:13891683-13891702 | Msa0316690:CDS | 35.0% | |
| ACTATCAACTTCAGATGATG+GGG | + | chr2_4:13891753-13891772 | Msa0316690:CDS | 35.0% | |
| TAAGATATTCCCTCAAAGCA+GGG | - | chr2_4:13891942-13891961 | None:intergenic | 35.0% | |
| ATAAGATATTCCCTCAAAGC+AGG | - | chr2_4:13891943-13891962 | None:intergenic | 35.0% | |
| !! | TGCGAGAGTACTGAAATCAA+TGG | + | chr2_4:13887794-13887813 | Msa0316690:exon | 40.0% |
| TACTGAAATCAATGGCGTCA+CGG | + | chr2_4:13887802-13887821 | Msa0316690:exon | 40.0% | |
| !!! | ATTGAACCTTTTTTCACCGC+CGG | - | chr2_4:13887940-13887959 | None:intergenic | 40.0% |
| TTGAAACAGTGAAGTGAGTG+AGG | + | chr2_4:13888174-13888193 | Msa0316690:intron | 40.0% | |
| AAGTGAGTGAGGTGTGAAAT+TGG | + | chr2_4:13888185-13888204 | Msa0316690:intron | 40.0% | |
| AGTGAGTGAGGTGTGAAATT+GGG | + | chr2_4:13888186-13888205 | Msa0316690:intron | 40.0% | |
| GCACTCGAAACTTATCTTAG+GGG | + | chr2_4:13888779-13888798 | Msa0316690:intron | 40.0% | |
| !! | TCAACTTGTTAAAGAGTGGG+AGG | + | chr2_4:13888887-13888906 | Msa0316690:intron | 40.0% |
| ! | GTCTAATGGCAATGCTCTTT+TGG | + | chr2_4:13888994-13889013 | Msa0316690:intron | 40.0% |
| AAAGCAAGTCAACCCATTGT+TGG | + | chr2_4:13889073-13889092 | Msa0316690:intron | 40.0% | |
| ! | CCCATTGTTGGAGAGTTTTA+AGG | + | chr2_4:13889085-13889104 | Msa0316690:intron | 40.0% |
| GCTATATCGCTATAGCATAG+CGG | - | chr2_4:13889257-13889276 | None:intergenic | 40.0% | |
| ! | TGCTATTTGACAACACTGCT+GGG | + | chr2_4:13889285-13889304 | Msa0316690:intron | 40.0% |
| GGGTAATTACTCCAATTAGC+TGG | + | chr2_4:13889305-13889324 | Msa0316690:intron | 40.0% | |
| ! | TTTTGCTGGAGCAGTTATTG+CGG | + | chr2_4:13889457-13889476 | Msa0316690:intron | 40.0% |
| GCCACAAATCAAGTCAAATG+TGG | + | chr2_4:13889479-13889498 | Msa0316690:intron | 40.0% | |
| ! | CAGTCACCACAGACATTTTA+CGG | + | chr2_4:13889506-13889525 | Msa0316690:intron | 40.0% |
| ! | CTTCTATGTTACTTCTCCAC+AGG | - | chr2_4:13889599-13889618 | None:intergenic | 40.0% |
| GTGGAGAAGTAACATAGAAG+AGG | + | chr2_4:13889599-13889618 | Msa0316690:intron | 40.0% | |
| GTAACACAAGGTTGCAGTAA+TGG | - | chr2_4:13889678-13889697 | None:intergenic | 40.0% | |
| ! | TACTGCAACCTTGTGTTACT+TGG | + | chr2_4:13889679-13889698 | Msa0316690:intron | 40.0% |
| !! | GTGTTACTTGGTGTTGAATG+TGG | + | chr2_4:13889691-13889710 | Msa0316690:intron | 40.0% |
| !! | TTTTATGCCATTTGGGTGAG+AGG | + | chr2_4:13889749-13889768 | Msa0316690:intron | 40.0% |
| ! | TTTATGCCATTTGGGTGAGA+GGG | + | chr2_4:13889750-13889769 | Msa0316690:intron | 40.0% |
| TGAAACCTCTTGGGCTTAAA+AGG | - | chr2_4:13889783-13889802 | None:intergenic | 40.0% | |
| ! | TCTCAAATAGAGAGGTGTAG+CGG | - | chr2_4:13889879-13889898 | None:intergenic | 40.0% |
| CTTGCCAATCTCAAATAGAG+AGG | - | chr2_4:13889887-13889906 | None:intergenic | 40.0% | |
| ! | CTCTCTATTTGAGATTGGCA+AGG | + | chr2_4:13889885-13889904 | Msa0316690:intron | 40.0% |
| ! | TGGTTTGGAATCAGATAGAG+CGG | - | chr2_4:13890034-13890053 | None:intergenic | 40.0% |
| AGGAGTGAAATGGAATGGTT+TGG | - | chr2_4:13890049-13890068 | None:intergenic | 40.0% | |
| ACGTCAAGAAAGGAGTGAAA+TGG | - | chr2_4:13890059-13890078 | None:intergenic | 40.0% | |
| CTATGTTTGCACGTCAAGAA+AGG | - | chr2_4:13890069-13890088 | None:intergenic | 40.0% | |
| GTGCAAACATAGCATCTTGA+TGG | + | chr2_4:13890077-13890096 | Msa0316690:intron | 40.0% | |
| AAAGTGACTTCTCCATTCAC+AGG | - | chr2_4:13890133-13890152 | None:intergenic | 40.0% | |
| CAATTGTACATTGTCTCCAG+TGG | + | chr2_4:13890335-13890354 | Msa0316690:intron | 40.0% | |
| CCCTTCAAAAGGAAATGATG+TGG | + | chr2_4:13890373-13890392 | Msa0316690:CDS | 40.0% | |
| TCAACAAGCTTTACTGGAAC+TGG | + | chr2_4:13890470-13890489 | Msa0316690:intron | 40.0% | |
| TGTTGAGAGTTAGAAGCAGT+TGG | - | chr2_4:13890521-13890540 | None:intergenic | 40.0% | |
| ATGTTGTGAACAACAGACTC+AGG | - | chr2_4:13890545-13890564 | None:intergenic | 40.0% | |
| ! | TCCTGCAAATGCCTCATTTT+TGG | + | chr2_4:13890622-13890641 | Msa0316690:CDS | 40.0% |
| ! | TCCAAAAATGAGGCATTTGC+AGG | - | chr2_4:13890626-13890645 | None:intergenic | 40.0% |
| !! | TGCAAATGCCTCATTTTTGG+AGG | + | chr2_4:13890625-13890644 | Msa0316690:CDS | 40.0% |
| !! | CTTCTAGGAGGAGTCATTTT+GGG | - | chr2_4:13890722-13890741 | None:intergenic | 40.0% |
| !! | TCTTCTAGGAGGAGTCATTT+TGG | - | chr2_4:13890723-13890742 | None:intergenic | 40.0% |
| TAAAAAGTCTGAATGCCCCA+AGG | + | chr2_4:13891002-13891021 | Msa0316690:CDS | 40.0% | |
| AGACTGCTTAAGAGAGCTTA+TGG | + | chr2_4:13891191-13891210 | Msa0316690:intron | 40.0% | |
| AAGAACACTTGGAAGCAGTT+CGG | + | chr2_4:13891514-13891533 | Msa0316690:CDS | 40.0% | |
| CTGAGTTGTATTGAGGTTGA+TGG | - | chr2_4:13891632-13891651 | None:intergenic | 40.0% | |
| CATCAACCTCAATACAACTC+AGG | + | chr2_4:13891630-13891649 | Msa0316690:CDS | 40.0% | |
| AAGATATTCCCTCAAAGCAG+GGG | - | chr2_4:13891941-13891960 | None:intergenic | 40.0% | |
| TTGCATTAGATTCTGTTGGG+TGG | + | chr2_4:13891995-13892014 | Msa0316690:three_prime_UTR | 40.0% | |
| ATCCAGTCATTACGAAGACA+CGG | - | chr2_4:13892090-13892109 | None:intergenic | 40.0% | |
| ACTGAAATCAATGGCGTCAC+GGG | + | chr2_4:13887803-13887822 | Msa0316690:exon | 45.0% | |
| TATCGGAATCAGCAGATGGT+CGG | - | chr2_4:13887887-13887906 | None:intergenic | 45.0% | |
| GTAATACTCCTGAGGACCAT+CGG | - | chr2_4:13887916-13887935 | None:intergenic | 45.0% | |
| ATTACACCGGCGGTGAAAAA+AGG | + | chr2_4:13887931-13887950 | Msa0316690:CDS | 45.0% | |
| GAAATTGGGAGAGATGTGAG+AGG | + | chr2_4:13888200-13888219 | Msa0316690:intron | 45.0% | |
| ! | GAGGAGTACATGTGCTTCAT+AGG | - | chr2_4:13888383-13888402 | None:intergenic | 45.0% |
| GCACATGTACTCCTCAGATT+AGG | + | chr2_4:13888388-13888407 | Msa0316690:intron | 45.0% | |
| GCATACTGTCGTAGTAGTGT+AGG | + | chr2_4:13888649-13888668 | Msa0316690:intron | 45.0% | |
| !! | AGAGCATTGCCATTAGACCA+AGG | - | chr2_4:13888992-13889011 | None:intergenic | 45.0% |
| ! | CTGCTATTTGACAACACTGC+TGG | + | chr2_4:13889284-13889303 | Msa0316690:intron | 45.0% |
| ! | ACAGGTGTGTTGCATTTTGC+TGG | + | chr2_4:13889443-13889462 | Msa0316690:intron | 45.0% |
| !!! | CTACAGGGGTTTTCTAGTTC+TGG | + | chr2_4:13889543-13889562 | Msa0316690:intron | 45.0% |
| CAAGAAAAGGAGGACAGCAA+CGG | + | chr2_4:13889639-13889658 | Msa0316690:intron | 45.0% | |
| !! | TTGGTGTTGAATGTGGCTGA+TGG | + | chr2_4:13889698-13889717 | Msa0316690:intron | 45.0% |
| ATGTGGCTGATGGAAGAAAG+AGG | + | chr2_4:13889708-13889727 | Msa0316690:intron | 45.0% | |
| TGTGGCTGATGGAAGAAAGA+GGG | + | chr2_4:13889709-13889728 | Msa0316690:intron | 45.0% | |
| !! | TTTGGCCTTTTAAGCCCAAG+AGG | + | chr2_4:13889775-13889794 | Msa0316690:intron | 45.0% |
| CAACACGAAACTGGGATAGT+GGG | - | chr2_4:13889855-13889874 | None:intergenic | 45.0% | |
| GAACTTCAAGCACCTGTGAA+TGG | + | chr2_4:13890118-13890137 | Msa0316690:intron | 45.0% | |
| !! | CATTTCCTTTTGAAGGGTCC+TGG | - | chr2_4:13890370-13890389 | None:intergenic | 45.0% |
| TTCAACCAAGCTAGGCAACT+TGG | + | chr2_4:13890404-13890423 | Msa0316690:CDS | 45.0% | |
| !! | GTAAAGCTTGTTGACCTTGG+AGG | - | chr2_4:13890464-13890483 | None:intergenic | 45.0% |
| !! | CCAGTAAAGCTTGTTGACCT+TGG | - | chr2_4:13890467-13890486 | None:intergenic | 45.0% |
| CCAAGGTCAACAAGCTTTAC+TGG | + | chr2_4:13890464-13890483 | Msa0316690:intron | 45.0% | |
| CCTCAAAGGTCCGTCATTTA+CGG | - | chr2_4:13890591-13890610 | None:intergenic | 45.0% | |
| GGATCATCCAATCTCCTCAA+AGG | - | chr2_4:13890605-13890624 | None:intergenic | 45.0% | |
| AGAATGCCCTGATATGTGTG+TGG | + | chr2_4:13890901-13890920 | Msa0316690:intron | 45.0% | |
| GAATGCCCTGATATGTGTGT+GGG | + | chr2_4:13890902-13890921 | Msa0316690:intron | 45.0% | |
| !! | AGCTGTTTTCACGGAGCTTA+TGG | - | chr2_4:13891259-13891278 | None:intergenic | 45.0% |
| AATGAAGCTTGGCTCCTTTC+CGG | - | chr2_4:13891482-13891501 | None:intergenic | 45.0% | |
| AAGGAGCCAAGCTTCATTTC+AGG | + | chr2_4:13891484-13891503 | Msa0316690:CDS | 45.0% | |
| AGGAGCCAAGCTTCATTTCA+GGG | + | chr2_4:13891485-13891504 | Msa0316690:CDS | 45.0% | |
| CAAGCTTCATTTCAGGGAGT+GGG | + | chr2_4:13891491-13891510 | Msa0316690:CDS | 45.0% | |
| ! | AGCTAGCCTGAGTTGTATTG+AGG | - | chr2_4:13891639-13891658 | None:intergenic | 45.0% |
| ! | ATACAACTCAGGCTAGCTGA+TGG | + | chr2_4:13891641-13891660 | Msa0316690:CDS | 45.0% |
| AGGTCTAGACGCATCAATGA+AGG | - | chr2_4:13891720-13891739 | None:intergenic | 45.0% | |
| TTCATTGATGCGTCTAGACC+TGG | + | chr2_4:13891719-13891738 | Msa0316690:CDS | 45.0% | |
| TCATTGATGCGTCTAGACCT+GGG | + | chr2_4:13891720-13891739 | Msa0316690:CDS | 45.0% | |
| TCTCATCAGCCAGAACCTTT+GGG | - | chr2_4:13891784-13891803 | None:intergenic | 45.0% | |
| ACACAGACTATAGAGCAAGC+AGG | + | chr2_4:13891803-13891822 | Msa0316690:CDS | 45.0% | |
| GACTATAGAGCAAGCAGGAT+TGG | + | chr2_4:13891808-13891827 | Msa0316690:CDS | 45.0% | |
| AGATATTCCCTCAAAGCAGG+GGG | - | chr2_4:13891940-13891959 | None:intergenic | 45.0% | |
| AGCAGATGGTCGGTTGAGAT+CGG | - | chr2_4:13887877-13887896 | None:intergenic | 50.0% | |
| TCGCTATCGGAATCAGCAGA+TGG | - | chr2_4:13887891-13887910 | None:intergenic | 50.0% | |
| !! | GGTCCTCAGGAGTATTACAC+CGG | + | chr2_4:13887918-13887937 | Msa0316690:CDS | 50.0% |
| GTCGTGTCGAACAGATATCC+AGG | - | chr2_4:13888419-13888438 | None:intergenic | 50.0% | |
| GCTGCTCTTCCTTGGTCTAA+TGG | + | chr2_4:13888980-13888999 | Msa0316690:intron | 50.0% | |
| TACTCCAATTAGCTGGAGCC+TGG | + | chr2_4:13889312-13889331 | Msa0316690:intron | 50.0% | |
| TCCACTGCAACTCTGAACAC+AGG | + | chr2_4:13889425-13889444 | Msa0316690:intron | 50.0% | |
| ACCTGTGTTCAGAGTTGCAG+TGG | - | chr2_4:13889429-13889448 | None:intergenic | 50.0% | |
| CTGTGGCCGTAAAATGTCTG+TGG | - | chr2_4:13889515-13889534 | None:intergenic | 50.0% | |
| ! | GACATTTTACGGCCACAGTC+TGG | + | chr2_4:13889517-13889536 | Msa0316690:intron | 50.0% |
| GTGGCTGATGGAAGAAAGAG+GGG | + | chr2_4:13889710-13889729 | Msa0316690:intron | 50.0% | |
| TGGCTGATGGAAGAAAGAGG+GGG | + | chr2_4:13889711-13889730 | Msa0316690:intron | 50.0% | |
| CAAACTCCCTCTCACCCAAA+TGG | - | chr2_4:13889759-13889778 | None:intergenic | 50.0% | |
| CATTTGGGTGAGAGGGAGTT+TGG | + | chr2_4:13889757-13889776 | Msa0316690:intron | 50.0% | |
| !! | ACGAAACTGGGATAGTGGGA+TGG | - | chr2_4:13889851-13889870 | None:intergenic | 50.0% |
| CCAACACGAAACTGGGATAG+TGG | - | chr2_4:13889856-13889875 | None:intergenic | 50.0% | |
| CCACTATCCCAGTTTCGTGT+TGG | + | chr2_4:13889853-13889872 | Msa0316690:intron | 50.0% | |
| GAGATTGGCAAGGTAGTACC+AGG | + | chr2_4:13889895-13889914 | Msa0316690:intron | 50.0% | |
| CTTGTCCAGGACCCTTCAAA+AGG | + | chr2_4:13890362-13890381 | Msa0316690:CDS | 50.0% | |
| GGCAACTTGGAGCTGTAGAA+AGG | + | chr2_4:13890417-13890436 | Msa0316690:CDS | 50.0% | |
| ATCAGCTTCAGGAACCTCCA+AGG | + | chr2_4:13890447-13890466 | Msa0316690:CDS | 50.0% | |
| CAAGCTTTACTGGAACTGGC+AGG | + | chr2_4:13890474-13890493 | Msa0316690:intron | 50.0% | |
| TGGAACTGGCAGGTTACTCT+CGG | + | chr2_4:13890484-13890503 | Msa0316690:intron | 50.0% | |
| !! | CCGTAAATGACGGACCTTTG+AGG | + | chr2_4:13890588-13890607 | Msa0316690:CDS | 50.0% |
| ! | TGACGGACCTTTGAGGAGAT+TGG | + | chr2_4:13890595-13890614 | Msa0316690:CDS | 50.0% |
| CATAGCAACAGGAACCGGAA+AGG | + | chr2_4:13891465-13891484 | Msa0316690:intron | 50.0% | |
| CCACTCCCTGAAATGAAGCT+TGG | - | chr2_4:13891493-13891512 | None:intergenic | 50.0% | |
| CCAAGCTTCATTTCAGGGAG+TGG | + | chr2_4:13891490-13891509 | Msa0316690:CDS | 50.0% | |
| GTCGAGGCAACATTTGTCTC+AGG | - | chr2_4:13891551-13891570 | None:intergenic | 50.0% | |
| AACCACGAGACCAGTAGAAG+GGG | - | chr2_4:13891597-13891616 | None:intergenic | 50.0% | |
| CAACCACGAGACCAGTAGAA+GGG | - | chr2_4:13891598-13891617 | None:intergenic | 50.0% | |
| TCAACCACGAGACCAGTAGA+AGG | - | chr2_4:13891599-13891618 | None:intergenic | 50.0% | |
| TAGACGCATCAATGAAGGCG+CGG | - | chr2_4:13891715-13891734 | None:intergenic | 50.0% | |
| CATTGATGCGTCTAGACCTG+GGG | + | chr2_4:13891721-13891740 | Msa0316690:CDS | 50.0% | |
| ATTGATGCGTCTAGACCTGG+GGG | + | chr2_4:13891722-13891741 | Msa0316690:CDS | 50.0% | |
| TCATCAGCCAGAACCTTTGG+GGG | - | chr2_4:13891782-13891801 | None:intergenic | 50.0% | |
| CTCATCAGCCAGAACCTTTG+GGG | - | chr2_4:13891783-13891802 | None:intergenic | 50.0% | |
| GTCTCATCAGCCAGAACCTT+TGG | - | chr2_4:13891785-13891804 | None:intergenic | 50.0% | |
| ATATTCCCTCAAAGCAGGGG+GGG | - | chr2_4:13891938-13891957 | None:intergenic | 50.0% | |
| GATATTCCCTCAAAGCAGGG+GGG | - | chr2_4:13891939-13891958 | None:intergenic | 50.0% | |
| TCTGTTGGGTGGCTTAGCTT+TGG | + | chr2_4:13892006-13892025 | Msa0316690:three_prime_UTR | 50.0% | |
| TGCCGTGTCTTCGTAATGAC+TGG | + | chr2_4:13892085-13892104 | Msa0316690:three_prime_UTR | 50.0% | |
| ! | AAGGCATCAAGCAGTCGAGC+TGG | + | chr2_4:13887834-13887853 | Msa0316690:CDS | 55.0% |
| GATTCCGATAGCGACTCCGA+TGG | + | chr2_4:13887897-13887916 | Msa0316690:CDS | 55.0% | |
| AGGACCATCGGAGTCGCTAT+CGG | - | chr2_4:13887904-13887923 | None:intergenic | 55.0% | |
| !! | CCTCAGGAGTATTACACCGG+CGG | + | chr2_4:13887921-13887940 | Msa0316690:CDS | 55.0% |
| TCCTCAGATTAGGCGTGTCC+TGG | + | chr2_4:13888398-13888417 | Msa0316690:intron | 55.0% | |
| TCCAGGACACGCCTAATCTG+AGG | - | chr2_4:13888402-13888421 | None:intergenic | 55.0% | |
| ACCAAGGAAGAGCAGCGAGT+GGG | - | chr2_4:13888976-13888995 | None:intergenic | 55.0% | |
| CAAGCCAGGCTCCAGCTAAT+TGG | - | chr2_4:13889319-13889338 | None:intergenic | 55.0% | |
| ACGCGTTCTTGCACCGCTAT+TGG | - | chr2_4:13889384-13889403 | None:intergenic | 55.0% | |
| AATAGCGGTGCAAGAACGCG+TGG | + | chr2_4:13889383-13889402 | Msa0316690:intron | 55.0% | |
| AGTTGCAGTGGATCCCTCCA+GGG | - | chr2_4:13889417-13889436 | None:intergenic | 55.0% | |
| GCCACAGTCTGGTGTCTACA+GGG | + | chr2_4:13889528-13889547 | Msa0316690:intron | 55.0% | |
| CCACAGTCTGGTGTCTACAG+GGG | + | chr2_4:13889529-13889548 | Msa0316690:intron | 55.0% | |
| GAAAAGGAGGACAGCAACGG+CGG | + | chr2_4:13889642-13889661 | Msa0316690:intron | 55.0% | |
| GATGGAAGAAAGAGGGGGCT+AGG | + | chr2_4:13889716-13889735 | Msa0316690:intron | 55.0% | |
| GTAGCGGCCAACACGAAACT+GGG | - | chr2_4:13889863-13889882 | None:intergenic | 55.0% | |
| TGTAGCGGCCAACACGAAAC+TGG | - | chr2_4:13889864-13889883 | None:intergenic | 55.0% | |
| CTCCAGTGGAATGCTTGTCC+AGG | + | chr2_4:13890349-13890368 | Msa0316690:intron | 55.0% | |
| GTCCTGGACAAGCATTCCAC+TGG | - | chr2_4:13890354-13890373 | None:intergenic | 55.0% | |
| CAGCTCCAAGTTGCCTAGCT+TGG | - | chr2_4:13890412-13890431 | None:intergenic | 55.0% | |
| TGGAGCTGTAGAAAGGCCTC+TGG | + | chr2_4:13890424-13890443 | Msa0316690:CDS | 55.0% | |
| AAGGCCTCTGGATCAGCTTC+AGG | + | chr2_4:13890436-13890455 | Msa0316690:CDS | 55.0% | |
| GGTTCCTGAAGCTGATCCAG+AGG | - | chr2_4:13890443-13890462 | None:intergenic | 55.0% | |
| GGAACTGGCAGGTTACTCTC+GGG | + | chr2_4:13890485-13890504 | Msa0316690:intron | 55.0% | |
| GAACTGGCAGGTTACTCTCG+GGG | + | chr2_4:13890486-13890505 | Msa0316690:intron | 55.0% | |
| AACTGGCAGGTTACTCTCGG+GGG | + | chr2_4:13890487-13890506 | Msa0316690:intron | 55.0% | |
| TCTGCAGGCTCAAGCTCCTT+GGG | - | chr2_4:13891021-13891040 | None:intergenic | 55.0% | |
| ATCTGCAGGCTCAAGCTCCT+TGG | - | chr2_4:13891022-13891041 | None:intergenic | 55.0% | |
| AGGAGCTTGAGCCTGCAGAT+AGG | + | chr2_4:13891022-13891041 | Msa0316690:CDS | 55.0% | |
| AGCTTGAGCCTGCAGATAGG+AGG | + | chr2_4:13891025-13891044 | Msa0316690:CDS | 55.0% | |
| ACAGCTGACCTCCTATCTGC+AGG | - | chr2_4:13891036-13891055 | None:intergenic | 55.0% | |
| CAGGGAGTGGGAAGAACACT+TGG | + | chr2_4:13891503-13891522 | Msa0316690:CDS | 55.0% | |
| TGGAAGCAGTTCGGCTTCGA+TGG | + | chr2_4:13891523-13891542 | Msa0316690:CDS | 55.0% | |
| AGTAGAAGGGGTTGGAGCTG+AGG | - | chr2_4:13891585-13891604 | None:intergenic | 55.0% | |
| TCAGCTCCAACCCCTTCTAC+TGG | + | chr2_4:13891584-13891603 | Msa0316690:CDS | 55.0% | |
| ACGAGACCAGTAGAAGGGGT+TGG | - | chr2_4:13891593-13891612 | None:intergenic | 55.0% | |
| ! | AACCCCTTCTACTGGTCTCG+TGG | + | chr2_4:13891592-13891611 | Msa0316690:CDS | 55.0% |
| !! | TGATAGTTTTGCCGACCCCC+AGG | - | chr2_4:13891740-13891759 | None:intergenic | 55.0% |
| CATCAGCCAGAACCTTTGGG+GGG | - | chr2_4:13891781-13891800 | None:intergenic | 55.0% | |
| GGCGTCACGGGACAACAAGA+AGG | + | chr2_4:13887815-13887834 | Msa0316690:CDS | 60.0% | |
| TAGCGACTCCGATGGTCCTC+AGG | + | chr2_4:13887905-13887924 | Msa0316690:CDS | 60.0% | |
| CCGCCGGTGTAATACTCCTG+AGG | - | chr2_4:13887924-13887943 | None:intergenic | 60.0% | |
| AAGGAAGAGCAGCGAGTGGG+GGG | - | chr2_4:13888973-13888992 | None:intergenic | 60.0% | |
| CAAGGAAGAGCAGCGAGTGG+GGG | - | chr2_4:13888974-13888993 | None:intergenic | 60.0% | |
| CCAAGGAAGAGCAGCGAGTG+GGG | - | chr2_4:13888975-13888994 | None:intergenic | 60.0% | |
| GACCAAGGAAGAGCAGCGAG+TGG | - | chr2_4:13888977-13888996 | None:intergenic | 60.0% | |
| GGTGCAAGAACGCGTGGTTG+CGG | + | chr2_4:13889389-13889408 | Msa0316690:intron | 60.0% | |
| GAGTTGCAGTGGATCCCTCC+AGG | - | chr2_4:13889418-13889437 | None:intergenic | 60.0% | |
| GGCCACAGTCTGGTGTCTAC+AGG | + | chr2_4:13889527-13889546 | Msa0316690:intron | 60.0% | |
| CCCCTGTAGACACCAGACTG+TGG | - | chr2_4:13889532-13889551 | None:intergenic | 60.0% | |
| CTGCAGGCTCAAGCTCCTTG+GGG | - | chr2_4:13891020-13891039 | None:intergenic | 60.0% | |
| GAAGGGGTTGGAGCTGAGGT+GGG | - | chr2_4:13891581-13891600 | None:intergenic | 60.0% | |
| AGAAGGGGTTGGAGCTGAGG+TGG | - | chr2_4:13891582-13891601 | None:intergenic | 60.0% | |
| CGCGGATGTCGCCAATTGTG+TGG | - | chr2_4:13891697-13891716 | None:intergenic | 60.0% | |
| ATGCGTCTAGACCTGGGGGT+CGG | + | chr2_4:13891726-13891745 | Msa0316690:CDS | 60.0% | |
| !! | GATGATGGGGTTCCCCCCAA+AGG | + | chr2_4:13891766-13891785 | Msa0316690:CDS | 60.0% |
| AGGAAACCCCCCCTGCTTTG+AGG | + | chr2_4:13891929-13891948 | Msa0316690:three_prime_UTR | 60.0% | |
| GGAAACCCCCCCTGCTTTGA+GGG | + | chr2_4:13891930-13891949 | Msa0316690:three_prime_UTR | 60.0% | |
| CCCCACTCGCTGCTCTTCCT+TGG | + | chr2_4:13888972-13888991 | Msa0316690:intron | 65.0% | |
| !! | TGAGGTGGGAGGCGTTGTCG+AGG | - | chr2_4:13891567-13891586 | None:intergenic | 65.0% |
| GGGGTTCCCCCCAAAGGTTC+TGG | + | chr2_4:13891772-13891791 | Msa0316690:CDS | 65.0% | |
| AACGCGTGGTTGCGGAGCCC+TGG | + | chr2_4:13889397-13889416 | Msa0316690:intron | 70.0% | |
| CGTGGTTGCGGAGCCCTGGA+GGG | + | chr2_4:13889401-13889420 | Msa0316690:intron | 70.0% | |
| GGGGTTGGAGCTGAGGTGGG+AGG | - | chr2_4:13891578-13891597 | None:intergenic | 70.0% | |
| GCGTGGTTGCGGAGCCCTGG+AGG | + | chr2_4:13889400-13889419 | Msa0316690:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13887774 | 13892159 | 13887774 | ID=Msa0316690;Name=Msa0316690 |
| chr2_4 | mRNA | 13887774 | 13892159 | 13887774 | ID=Msa0316690-mRNA-1;Parent=Msa0316690;Name=Msa0316690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=39|0.75|0.6|1|0.75|0.6|5|300|294 |
| chr2_4 | exon | 13887774 | 13887952 | 13887774 | ID=Msa0316690-mRNA-1:exon:5278;Parent=Msa0316690-mRNA-1 |
| chr2_4 | exon | 13890355 | 13890468 | 13890355 | ID=Msa0316690-mRNA-1:exon:5279;Parent=Msa0316690-mRNA-1 |
| chr2_4 | exon | 13890496 | 13890646 | 13890496 | ID=Msa0316690-mRNA-1:exon:5280;Parent=Msa0316690-mRNA-1 |
| chr2_4 | exon | 13890997 | 13891092 | 13890997 | ID=Msa0316690-mRNA-1:exon:5281;Parent=Msa0316690-mRNA-1 |
| chr2_4 | exon | 13891476 | 13892159 | 13891476 | ID=Msa0316690-mRNA-1:exon:5282;Parent=Msa0316690-mRNA-1 |
| chr2_4 | five_prime_UTR | 13887774 | 13887812 | 13887774 | ID=Msa0316690-mRNA-1:five_prime_utr;Parent=Msa0316690-mRNA-1 |
| chr2_4 | CDS | 13887813 | 13887952 | 13887813 | ID=Msa0316690-mRNA-1:cds;Parent=Msa0316690-mRNA-1 |
| chr2_4 | CDS | 13890355 | 13890468 | 13890355 | ID=Msa0316690-mRNA-1:cds;Parent=Msa0316690-mRNA-1 |
| chr2_4 | CDS | 13890496 | 13890646 | 13890496 | ID=Msa0316690-mRNA-1:cds;Parent=Msa0316690-mRNA-1 |
| chr2_4 | CDS | 13890997 | 13891092 | 13890997 | ID=Msa0316690-mRNA-1:cds;Parent=Msa0316690-mRNA-1 |
| chr2_4 | CDS | 13891476 | 13891859 | 13891476 | ID=Msa0316690-mRNA-1:cds;Parent=Msa0316690-mRNA-1 |
| chr2_4 | three_prime_UTR | 13891860 | 13892159 | 13891860 | ID=Msa0316690-mRNA-1:three_prime_utr;Parent=Msa0316690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
