AlfalfaGEDB | Msa0201160

M. sativa cultivar zhongmu-4 / Msa0201160

KEGG: K10727
GO: -
PFAM: PF16679.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0201160	AES76354.1	89.516	124	11	1	1	122	41	164	3.32e-71	220

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0201160	sp\|Q9M1S9\|CDT1B_ARATH	42.857	84	48	0	31	114	391	474	1.40e-15	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0201160	G7KKA0	89.516	124	11	1	1	122	41	164	1.59e-71	220

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0201160	Msa0222890	0.800181	1.625402e-48	-8.615850e-47
Msa0201160	Msa0280090	0.801128	1.042035e-48	-8.615850e-47
Msa0201160	Msa0529890	0.808662	2.774705e-50	-8.615850e-47
Msa0201160	Msa0625720	0.809106	2.229663e-50	-8.615850e-47
Msa0201160	Msa0731940	0.805973	1.030400e-49	-8.615850e-47
Msa0201160	Msa1466540	0.821380	4.164287e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0201160	MtrunA17_Chr6g0482481	89.516	124	11	1	1	122	64	187	9.36e-75	219
Msa0201160	MtrunA17_Chr6g0482501	91.803	122	10	0	2	123	410	531	1.73e-73	227
Msa0201160	MtrunA17_Chr6g0482371	58.678	121	22	1	3	123	31	123	5.24e-39	127
Msa0201160	MtrunA17_Chr6g0482341	88.235	68	7	1	2	69	25	91	2.07e-34	114
Msa0201160	MtrunA17_Chr1g0172551	85.366	41	6	0	2	42	112	152	1.73e-17	73.6
Msa0201160	MtrunA17_Chr1g0184201	41.860	86	50	0	29	114	551	636	8.40e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0201160	AT3G54710.1	42.857	84	48	0	31	114	391	474	1.42e-16	74.7
Msa0201160	AT2G31270.1	41.667	84	49	0	31	114	475	558	1.51e-15	72.0

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Find 26 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTCTTGCAAAGCCAGTC+TGG	0.423623	2_1:+22082345	None:intergenic
AAGAACTTCAATCACAAAAG+AGG	0.504889	2_1:-22082540	Msa0201160:CDS
ACATATGAGACTGTAAGAAC+AGG	0.517455	2_1:-22081788	Msa0201160:three_prime_UTR
ACATATTGTATTCTCTGTCT+CGG	0.509486	2_1:-22081729	Msa0201160:three_prime_UTR
ACCAGCTATAGTGAATATCT+TGG	0.485587	2_1:-22081816	Msa0201160:three_prime_UTR
ACCAGTTCCACCAATGATGA+AGG	0.470890	2_1:+22082596	None:intergenic
AGACTGGCTTTGCAAGAAGT+TGG	0.482751	2_1:-22082343	Msa0201160:CDS
ATGCAGGTAGATGAGAACCT+TGG	0.622672	2_1:-22082677	Msa0201160:CDS
ATGCATTGCTTGGTAATTGT+TGG	0.459448	2_1:-22081873	Msa0201160:three_prime_UTR
ATTGCTTGGTAATTGTTGGT+TGG	0.578319	2_1:-22081869	Msa0201160:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAACATTATTTGGATGCAT+CGG	-	chr2_1:22081750-22081769	Msa0201160:three_prime_UTR	30.0%
AAGAACTTCAATCACAAAAG+AGG	-	chr2_1:22081837-22081856	Msa0201160:three_prime_UTR	30.0%
ACATGAAATTTCAGTCTCTT+CGG	-	chr2_1:22082170-22082189	Msa0201160:intron	30.0%
AAAAGAACTTAGCAGTTTGA+TGG	-	chr2_1:22082239-22082258	Msa0201160:intron	30.0%
TGTCAAGAATGTGTTAGATT+TGG	-	chr2_1:22082393-22082412	Msa0201160:intron	30.0%
ACATATTGTATTCTCTGTCT+CGG	-	chr2_1:22082648-22082667	Msa0201160:CDS	30.0%
TCAACATTATTTGGATGCAT+CGG	-	chr2_1:22081750-22081769	Msa0201160:three_prime_UTR	30.0%
AAGAACTTCAATCACAAAAG+AGG	-	chr2_1:22081837-22081856	Msa0201160:three_prime_UTR	30.0%
ACATGAAATTTCAGTCTCTT+CGG	-	chr2_1:22082170-22082189	Msa0201160:intron	30.0%
AAAAGAACTTAGCAGTTTGA+TGG	-	chr2_1:22082239-22082258	Msa0201160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	22081700	22082699	22081700	ID=Msa0201160;Name=Msa0201160
chr2_1	mRNA	22081700	22082699	22081700	ID=Msa0201160-mRNA-1;Parent=Msa0201160;Name=Msa0201160-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|1\|0.66\|1\|1\|1\|3\|234\|123
chr2_1	exon	22081700	22082006	22081700	ID=Msa0201160-mRNA-1:exon:8890;Parent=Msa0201160-mRNA-1
chr2_1	exon	22082318	22082408	22082318	ID=Msa0201160-mRNA-1:exon:8889;Parent=Msa0201160-mRNA-1
chr2_1	exon	22082492	22082699	22082492	ID=Msa0201160-mRNA-1:exon:8888;Parent=Msa0201160-mRNA-1
chr2_1	CDS	22082492	22082699	22082492	ID=Msa0201160-mRNA-1:cds;Parent=Msa0201160-mRNA-1
chr2_1	CDS	22082318	22082408	22082318	ID=Msa0201160-mRNA-1:cds;Parent=Msa0201160-mRNA-1
chr2_1	CDS	22081934	22082006	22081934	ID=Msa0201160-mRNA-1:cds;Parent=Msa0201160-mRNA-1
chr2_1	three_prime_UTR	22081700	22081933	22081700	ID=Msa0201160-mRNA-1:three_prime_utr;Parent=Msa0201160-mRNA-1

Gene Sequence	>Msa0201160 ATGCAGGTAGATGAGAACCTTGGTCATTCTTTTCAGAAAATCAATGTAGATCAACATTATTTGGATGCATCGGATGACAATCCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATATTTGACTCTGTCAAAAGAACTTCAATCACAAAAGAGGAGCTCTTGCAAAAGATAATGATGAACTGTTTAGATTTTGTTGAGATTAGAGAAGCTGAAGAACAGATTGAGATTTTGGAAAAGATTGTGCCAGACTGGCTTTGCAAGAAGTTGGTTTCTTCTGGAGACACTATGTACTGTGTCAAGAATGTGTTAGATTTGGACTCAGTTCGATCAAGGCTTCTCAGCAATGTGAACAAAGGAGATGAGTGA
Protein sequence	>Msa0201160 MQVDENLGHSFQKINVDQHYLDASDDNPSSLVELVNVIDSIFDSVKRTSITKEELLQKIMMNCLDFVEIREAEEQIEILEKIVPDWLCKKLVSSGDTMYCVKNVLDLDSVRSRLLSNVNKGDE*