AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280090 MtrunA17_Chr2g0293841 98.936 94 1 0 1 94 931 1024 1.57e-62 204
Msa0280090 MtrunA17_Chr7g0265431 52.475 101 40 2 1 94 1049 1148 2.78e-28 106
Msa0280090 MtrunA17_Chr4g0052551 47.253 91 47 1 2 91 3644 3734 4.34e-20 83.2
Msa0280090 MtrunA17_Chr4g0052561 45.055 91 49 1 2 91 3665 3755 3.95e-19 80.5
Msa0280090 MtrunA17_Chr3g0132611 43.956 91 50 1 2 91 3568 3658 6.49e-19 79.7
Msa0280090 MtrunA17_Chr5g0427791 42.857 91 51 1 2 91 3562 3652 1.22e-17 76.3
Msa0280090 MtrunA17_Chr4g0037101 40.777 103 49 2 4 94 1779 1881 1.60e-16 73.2
Msa0280090 MtrunA17_Chr7g0263651 42.857 91 48 2 1 90 93 180 2.58e-16 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280090 AT3G17205.2 75.532 94 23 0 1 94 922 1015 9.51e-48 162
Msa0280090 AT3G17205.1 75.532 94 23 0 1 94 936 1029 1.12e-47 162
Msa0280090 AT3G17205.3 75.532 94 23 0 1 94 936 1029 1.12e-47 162
Msa0280090 AT3G53090.1 52.000 100 42 1 1 94 1043 1142 4.02e-29 109
Msa0280090 AT3G53090.2 52.000 100 42 1 1 94 1043 1142 4.02e-29 109
Msa0280090 AT1G55860.1 45.745 94 50 1 2 94 3588 3681 1.03e-20 85.5
Msa0280090 AT1G70320.1 44.681 94 51 1 2 94 3565 3658 2.52e-20 84.3
Msa0280090 AT5G02880.1 44.565 92 48 2 4 94 1413 1502 5.31e-17 74.7
Msa0280090 AT4G38600.3 39.423 104 52 2 2 94 1785 1888 1.28e-14 68.2
Msa0280090 AT4G38600.1 39.423 104 52 2 2 94 1785 1888 1.28e-14 68.2
Msa0280090 AT4G38600.2 39.604 101 50 2 5 94 1694 1794 3.70e-14 66.6

Find 31 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCCAGCATCAGAATTTA+TGG 0.203753 2_3:-14374512 None:intergenic
ATTTATGGCATACAGTAATT+TGG 0.204741 2_3:-14374497 None:intergenic
TATGGAAAACTTACTTTATA+TGG 0.208760 2_3:-14374569 None:intergenic
GGCTTTGATTTGAGCTAAAA+AGG 0.228218 2_3:+14374529 Msa0280090:exon
TGCTCTCGAGGACCATTACT+TGG 0.380445 2_3:+14373246 Msa0280090:CDS
AAATTGTTGGAAGTAGATAT+TGG 0.386773 2_3:+14374876 Msa0280090:three_prime_UTR
GACTCTTGAATTTGTCTGAT+AGG 0.391536 2_3:+14373058 Msa0280090:five_prime_UTR
TAAAACTTCCACCGTATAGA+AGG 0.393265 2_3:+14373616 Msa0280090:CDS
ATGATGTGATTGAGATGTTC+TGG 0.412106 2_3:+14373084 Msa0280090:exon
GTATACGAAACTAAAATTGT+TGG 0.424339 2_3:+14374863 Msa0280090:three_prime_UTR
AGAACAAAGGCTCAAGATAT+CGG 0.431066 2_3:-14373272 None:intergenic
ACTAGAACAAACCTTCTATA+CGG 0.452817 2_3:-14373627 None:intergenic
TATTTGCAGTAAGGATCAAA+TGG 0.484448 2_3:+14374471 Msa0280090:intron
CGAGTCATCTTCTACCGGTA+TGG 0.498687 2_3:-14374587 None:intergenic
CATCTTTACAGGTTTGTGAC+AGG 0.510953 2_3:+14373222 Msa0280090:intron
TTCATACAGGTAGCTGCTGT+TGG 0.535803 2_3:-14373588 None:intergenic
CTCAGTTCTCATCATACCAT+CGG 0.540158 2_3:-14374659 None:intergenic
TTTGTGACAGGTTGCTCTCG+AGG 0.558664 2_3:+14373234 Msa0280090:CDS
TATGCCATAAATTCTGATGC+TGG 0.558843 2_3:+14374508 Msa0280090:CDS
GATGTTCTGGGAAGTACTCA+AGG 0.562883 2_3:+14373097 Msa0280090:exon
AATAATATTATCAGATCCGA+TGG 0.569435 2_3:+14374643 Msa0280090:three_prime_UTR
TAATCTGTCGAGAGCATCCT+CGG 0.578790 2_3:-14373565 None:intergenic
TGATGTGATTGAGATGTTCT+GGG 0.581943 2_3:+14373085 Msa0280090:exon
AGCCTTTGTTCTGCATACAA+AGG 0.588497 2_3:+14373283 Msa0280090:CDS
AGATATCGGAATCCAAGTAA+TGG 0.591674 2_3:-14373258 None:intergenic
AAAAGCGAGTCATCTTCTAC+CGG 0.606911 2_3:-14374592 None:intergenic
CACCTTTGTATGCAGAACAA+AGG 0.608363 2_3:-14373285 None:intergenic
TGTGCTTCTTGTAGGGCTGG+AGG 0.623790 2_3:+14373534 Msa0280090:intron
ATGTTCTGGGAAGTACTCAA+GGG 0.641318 2_3:+14373098 Msa0280090:CDS
GGCTGGAGGTAATGCTACCG+AGG 0.660652 2_3:+14373548 Msa0280090:CDS
AGAACAAACCTTCTATACGG+TGG 0.671400 2_3:-14373624 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAATAGAAAGTTATTAT+TGG + chr2_3:14373370-14373389 Msa0280090:intron 15.0%
!!! TCAAAATCAGAATTTTTTAT+TGG - chr2_3:14373441-14373460 None:intergenic 15.0%
!!! ATTTTGTAAAATTCACTTTT+TGG + chr2_3:14374773-14374792 Msa0280090:three_prime_UTR 15.0%
!! AGTTAATAGAAAGTTATTAT+TGG + chr2_3:14373370-14373389 Msa0280090:intron 15.0%
!!! TCAAAATCAGAATTTTTTAT+TGG - chr2_3:14373441-14373460 None:intergenic 15.0%
!!! ATTTTGTAAAATTCACTTTT+TGG + chr2_3:14374773-14374792 Msa0280090:three_prime_UTR 15.0%
!! AATAAATTTACCATCTTTAC+AGG + chr2_3:14373211-14373230 Msa0280090:intron 20.0%
!! GAATGATAATAGTTAACTAT+AGG + chr2_3:14373939-14373958 Msa0280090:intron 20.0%
!! TATATGACATAGAGATTAAA+TGG - chr2_3:14374251-14374270 None:intergenic 20.0%
!! AATAGTTCAAAATCAAACTA+CGG - chr2_3:14374342-14374361 None:intergenic 20.0%
!! TAGTTAACAAAATTTCACAA+AGG - chr2_3:14374420-14374439 None:intergenic 20.0%
!! TATGGAAAACTTACTTTATA+TGG - chr2_3:14374572-14374591 None:intergenic 20.0%
!! AATAAATTTACCATCTTTAC+AGG + chr2_3:14373211-14373230 Msa0280090:intron 20.0%
!! GAATGATAATAGTTAACTAT+AGG + chr2_3:14373939-14373958 Msa0280090:intron 20.0%
!! TATATGACATAGAGATTAAA+TGG - chr2_3:14374251-14374270 None:intergenic 20.0%
!! AATAGTTCAAAATCAAACTA+CGG - chr2_3:14374342-14374361 None:intergenic 20.0%
!! TAGTTAACAAAATTTCACAA+AGG - chr2_3:14374420-14374439 None:intergenic 20.0%
!! TATGGAAAACTTACTTTATA+TGG - chr2_3:14374572-14374591 None:intergenic 20.0%
! AAGTAAGCTAACATAGTTAT+AGG + chr2_3:14373152-14373171 Msa0280090:intron 25.0%
!!! AAGTTTTAACAGATTCATAC+AGG - chr2_3:14373604-14373623 None:intergenic 25.0%
!! AAAAACTGTTTTGTAAGTAG+TGG + chr2_3:14373802-14373821 Msa0280090:intron 25.0%
!! AAAACTGTTTTGTAAGTAGT+GGG + chr2_3:14373803-14373822 Msa0280090:intron 25.0%
!!! TTTTGCTGAAGTATTTGAAT+AGG + chr2_3:14374201-14374220 Msa0280090:intron 25.0%
! TCATATATATATGCATATCC+TGG + chr2_3:14374264-14374283 Msa0280090:intron 25.0%
!! ATTTGATATCTAGTCCTTTT+TGG + chr2_3:14374362-14374381 Msa0280090:intron 25.0%
! ATTTATGGCATACAGTAATT+TGG - chr2_3:14374500-14374519 None:intergenic 25.0%
!! ATAAAGTAAGTTTTCCATAC+CGG + chr2_3:14374573-14374592 Msa0280090:three_prime_UTR 25.0%
! AATAATATTATCAGATCCGA+TGG + chr2_3:14374643-14374662 Msa0280090:three_prime_UTR 25.0%
! GTATACGAAACTAAAATTGT+TGG + chr2_3:14374863-14374882 Msa0280090:three_prime_UTR 25.0%
! AAATTGTTGGAAGTAGATAT+TGG + chr2_3:14374876-14374895 Msa0280090:three_prime_UTR 25.0%
! AAGTAAGCTAACATAGTTAT+AGG + chr2_3:14373152-14373171 Msa0280090:intron 25.0%
!!! AAGTTTTAACAGATTCATAC+AGG - chr2_3:14373604-14373623 None:intergenic 25.0%
!! AAAAACTGTTTTGTAAGTAG+TGG + chr2_3:14373802-14373821 Msa0280090:intron 25.0%
!! AAAACTGTTTTGTAAGTAGT+GGG + chr2_3:14373803-14373822 Msa0280090:intron 25.0%
!!! TTTTGCTGAAGTATTTGAAT+AGG + chr2_3:14374201-14374220 Msa0280090:intron 25.0%
! TCATATATATATGCATATCC+TGG + chr2_3:14374264-14374283 Msa0280090:intron 25.0%
!! ATTTGATATCTAGTCCTTTT+TGG + chr2_3:14374362-14374381 Msa0280090:intron 25.0%
! ATTTATGGCATACAGTAATT+TGG - chr2_3:14374500-14374519 None:intergenic 25.0%
!! ATAAAGTAAGTTTTCCATAC+CGG + chr2_3:14374573-14374592 Msa0280090:three_prime_UTR 25.0%
! AATAATATTATCAGATCCGA+TGG + chr2_3:14374643-14374662 Msa0280090:three_prime_UTR 25.0%
! GTATACGAAACTAAAATTGT+TGG + chr2_3:14374863-14374882 Msa0280090:three_prime_UTR 25.0%
! AAATTGTTGGAAGTAGATAT+TGG + chr2_3:14374876-14374895 Msa0280090:three_prime_UTR 25.0%
TGAATGCTTTAACAATATCG+AGG + chr2_3:14373306-14373325 Msa0280090:intron 30.0%
GAATGCTTTAACAATATCGA+GGG + chr2_3:14373307-14373326 Msa0280090:intron 30.0%
AATCAATTGTTTCAAGACAC+TGG + chr2_3:14373337-14373356 Msa0280090:intron 30.0%
AGTATTAGGCAACTATTAAC+CGG - chr2_3:14373478-14373497 None:intergenic 30.0%
CACAGTAAACTACTAGTATT+AGG - chr2_3:14373492-14373511 None:intergenic 30.0%
ACTAGAACAAACCTTCTATA+CGG - chr2_3:14373630-14373649 None:intergenic 30.0%
GTATAAATTCCATGTTCGAA+CGG - chr2_3:14373675-14373694 None:intergenic 30.0%
TATTAGATATGCATATGCAC+AGG + chr2_3:14373917-14373936 Msa0280090:intron 30.0%
GACATGAAAATGTATGCTTA+AGG + chr2_3:14374017-14374036 Msa0280090:intron 30.0%
TTTACCAGTAATACGTGATA+TGG - chr2_3:14374130-14374149 None:intergenic 30.0%
TATTACTGGTAAAGTGTAGA+TGG + chr2_3:14374137-14374156 Msa0280090:intron 30.0%
ATTGTAAAACAGACTGTTCT+TGG + chr2_3:14374224-14374243 Msa0280090:intron 30.0%
TTGTAAAACAGACTGTTCTT+GGG + chr2_3:14374225-14374244 Msa0280090:intron 30.0%
AAATCCAAACAAAAGAATCG+AGG - chr2_3:14374293-14374312 None:intergenic 30.0%
! TGAGTTTGTTTGTATTGTCA+GGG - chr2_3:14374447-14374466 None:intergenic 30.0%
! ATGAGTTTGTTTGTATTGTC+AGG - chr2_3:14374448-14374467 None:intergenic 30.0%
ACTCATGTTTATTTGCAGTA+AGG + chr2_3:14374462-14374481 Msa0280090:intron 30.0%
TATTTGCAGTAAGGATCAAA+TGG + chr2_3:14374471-14374490 Msa0280090:intron 30.0%
!!! TGTAAAATTCACTTTTTGGC+AGG + chr2_3:14374777-14374796 Msa0280090:three_prime_UTR 30.0%
TGAATGCTTTAACAATATCG+AGG + chr2_3:14373306-14373325 Msa0280090:intron 30.0%
GAATGCTTTAACAATATCGA+GGG + chr2_3:14373307-14373326 Msa0280090:intron 30.0%
AATCAATTGTTTCAAGACAC+TGG + chr2_3:14373337-14373356 Msa0280090:intron 30.0%
AGTATTAGGCAACTATTAAC+CGG - chr2_3:14373478-14373497 None:intergenic 30.0%
CACAGTAAACTACTAGTATT+AGG - chr2_3:14373492-14373511 None:intergenic 30.0%
ACTAGAACAAACCTTCTATA+CGG - chr2_3:14373630-14373649 None:intergenic 30.0%
GTATAAATTCCATGTTCGAA+CGG - chr2_3:14373675-14373694 None:intergenic 30.0%
TATTAGATATGCATATGCAC+AGG + chr2_3:14373917-14373936 Msa0280090:intron 30.0%
GACATGAAAATGTATGCTTA+AGG + chr2_3:14374017-14374036 Msa0280090:intron 30.0%
TTTACCAGTAATACGTGATA+TGG - chr2_3:14374130-14374149 None:intergenic 30.0%
TATTACTGGTAAAGTGTAGA+TGG + chr2_3:14374137-14374156 Msa0280090:intron 30.0%
ATTGTAAAACAGACTGTTCT+TGG + chr2_3:14374224-14374243 Msa0280090:intron 30.0%
TTGTAAAACAGACTGTTCTT+GGG + chr2_3:14374225-14374244 Msa0280090:intron 30.0%
AAATCCAAACAAAAGAATCG+AGG - chr2_3:14374293-14374312 None:intergenic 30.0%
! TGAGTTTGTTTGTATTGTCA+GGG - chr2_3:14374447-14374466 None:intergenic 30.0%
! ATGAGTTTGTTTGTATTGTC+AGG - chr2_3:14374448-14374467 None:intergenic 30.0%
ACTCATGTTTATTTGCAGTA+AGG + chr2_3:14374462-14374481 Msa0280090:intron 30.0%
TATTTGCAGTAAGGATCAAA+TGG + chr2_3:14374471-14374490 Msa0280090:intron 30.0%
!!! TGTAAAATTCACTTTTTGGC+AGG + chr2_3:14374777-14374796 Msa0280090:three_prime_UTR 30.0%
GACTCTTGAATTTGTCTGAT+AGG + chr2_3:14373058-14373077 Msa0280090:five_prime_UTR 35.0%
ATGATGTGATTGAGATGTTC+TGG + chr2_3:14373084-14373103 Msa0280090:exon 35.0%
TGATGTGATTGAGATGTTCT+GGG + chr2_3:14373085-14373104 Msa0280090:exon 35.0%
!! AGTACTCAAGGGTTTTTCAA+TGG + chr2_3:14373109-14373128 Msa0280090:CDS 35.0%
!! AGGGTTTTTCAATGGAAAAC+AGG + chr2_3:14373117-14373136 Msa0280090:CDS 35.0%
AGATATCGGAATCCAAGTAA+TGG - chr2_3:14373261-14373280 None:intergenic 35.0%
AGAACAAAGGCTCAAGATAT+CGG - chr2_3:14373275-14373294 None:intergenic 35.0%
TTTGAATCCTTAACAAGCAC+CGG + chr2_3:14373456-14373475 Msa0280090:intron 35.0%
TAAAACTTCCACCGTATAGA+AGG + chr2_3:14373616-14373635 Msa0280090:CDS 35.0%
ACTGTTATAGATCTCAAGAG+TGG + chr2_3:14373703-14373722 Msa0280090:intron 35.0%
! TTGTAAGTAGTGGGATTTAG+TGG + chr2_3:14373812-14373831 Msa0280090:intron 35.0%
TTGTCCATATCACGTATTAC+TGG + chr2_3:14374123-14374142 Msa0280090:intron 35.0%
TCAAGTGAAAATAGTACTGC+TGG - chr2_3:14374180-14374199 None:intergenic 35.0%
! GTTACCTCGATTCTTTTGTT+TGG + chr2_3:14374286-14374305 Msa0280090:intron 35.0%
! AATCAAAGTGTCAGCCAAAA+AGG - chr2_3:14374379-14374398 None:intergenic 35.0%
TATGCCATAAATTCTGATGC+TGG + chr2_3:14374508-14374527 Msa0280090:CDS 35.0%
AAAGCCAGCATCAGAATTTA+TGG - chr2_3:14374515-14374534 None:intergenic 35.0%
!! GGCTTTGATTTGAGCTAAAA+AGG + chr2_3:14374529-14374548 Msa0280090:exon 35.0%
GACTCTTGAATTTGTCTGAT+AGG + chr2_3:14373058-14373077 Msa0280090:five_prime_UTR 35.0%
ATGATGTGATTGAGATGTTC+TGG + chr2_3:14373084-14373103 Msa0280090:exon 35.0%
TGATGTGATTGAGATGTTCT+GGG + chr2_3:14373085-14373104 Msa0280090:exon 35.0%
!! AGTACTCAAGGGTTTTTCAA+TGG + chr2_3:14373109-14373128 Msa0280090:CDS 35.0%
!! AGGGTTTTTCAATGGAAAAC+AGG + chr2_3:14373117-14373136 Msa0280090:CDS 35.0%
AGATATCGGAATCCAAGTAA+TGG - chr2_3:14373261-14373280 None:intergenic 35.0%
AGAACAAAGGCTCAAGATAT+CGG - chr2_3:14373275-14373294 None:intergenic 35.0%
TTTGAATCCTTAACAAGCAC+CGG + chr2_3:14373456-14373475 Msa0280090:intron 35.0%
TAAAACTTCCACCGTATAGA+AGG + chr2_3:14373616-14373635 Msa0280090:CDS 35.0%
ACTGTTATAGATCTCAAGAG+TGG + chr2_3:14373703-14373722 Msa0280090:intron 35.0%
! TTGTAAGTAGTGGGATTTAG+TGG + chr2_3:14373812-14373831 Msa0280090:intron 35.0%
TTGTCCATATCACGTATTAC+TGG + chr2_3:14374123-14374142 Msa0280090:intron 35.0%
TCAAGTGAAAATAGTACTGC+TGG - chr2_3:14374180-14374199 None:intergenic 35.0%
! GTTACCTCGATTCTTTTGTT+TGG + chr2_3:14374286-14374305 Msa0280090:intron 35.0%
! AATCAAAGTGTCAGCCAAAA+AGG - chr2_3:14374379-14374398 None:intergenic 35.0%
TATGCCATAAATTCTGATGC+TGG + chr2_3:14374508-14374527 Msa0280090:CDS 35.0%
AAAGCCAGCATCAGAATTTA+TGG - chr2_3:14374515-14374534 None:intergenic 35.0%
!! GGCTTTGATTTGAGCTAAAA+AGG + chr2_3:14374529-14374548 Msa0280090:exon 35.0%
!! ATGTTCTGGGAAGTACTCAA+GGG + chr2_3:14373098-14373117 Msa0280090:CDS 40.0%
CTGTCACAAACCTGTAAAGA+TGG - chr2_3:14373224-14373243 None:intergenic 40.0%
CATCTTTACAGGTTTGTGAC+AGG + chr2_3:14373222-14373241 Msa0280090:intron 40.0%
AGCCTTTGTTCTGCATACAA+AGG + chr2_3:14373283-14373302 Msa0280090:CDS 40.0%
CACCTTTGTATGCAGAACAA+AGG - chr2_3:14373288-14373307 None:intergenic 40.0%
! CTATTAACCGGTGCTTGTTA+AGG - chr2_3:14373466-14373485 None:intergenic 40.0%
TAATGCCTGTGCTTCTTGTA+GGG + chr2_3:14373527-14373546 Msa0280090:intron 40.0%
AGAACAAACCTTCTATACGG+TGG - chr2_3:14373627-14373646 None:intergenic 40.0%
GTAAAGTGTAGATGGATCTC+TGG + chr2_3:14374145-14374164 Msa0280090:intron 40.0%
ACAAAAGAATCGAGGTAACC+AGG - chr2_3:14374285-14374304 None:intergenic 40.0%
AAAAGCGAGTCATCTTCTAC+CGG - chr2_3:14374595-14374614 None:intergenic 40.0%
CTCAGTTCTCATCATACCAT+CGG - chr2_3:14374662-14374681 None:intergenic 40.0%
!! ATGTTCTGGGAAGTACTCAA+GGG + chr2_3:14373098-14373117 Msa0280090:CDS 40.0%
CTGTCACAAACCTGTAAAGA+TGG - chr2_3:14373224-14373243 None:intergenic 40.0%
CATCTTTACAGGTTTGTGAC+AGG + chr2_3:14373222-14373241 Msa0280090:intron 40.0%
AGCCTTTGTTCTGCATACAA+AGG + chr2_3:14373283-14373302 Msa0280090:CDS 40.0%
CACCTTTGTATGCAGAACAA+AGG - chr2_3:14373288-14373307 None:intergenic 40.0%
! CTATTAACCGGTGCTTGTTA+AGG - chr2_3:14373466-14373485 None:intergenic 40.0%
TAATGCCTGTGCTTCTTGTA+GGG + chr2_3:14373527-14373546 Msa0280090:intron 40.0%
AGAACAAACCTTCTATACGG+TGG - chr2_3:14373627-14373646 None:intergenic 40.0%
GTAAAGTGTAGATGGATCTC+TGG + chr2_3:14374145-14374164 Msa0280090:intron 40.0%
ACAAAAGAATCGAGGTAACC+AGG - chr2_3:14374285-14374304 None:intergenic 40.0%
AAAAGCGAGTCATCTTCTAC+CGG - chr2_3:14374595-14374614 None:intergenic 40.0%
CTCAGTTCTCATCATACCAT+CGG - chr2_3:14374662-14374681 None:intergenic 40.0%
!! GATGTTCTGGGAAGTACTCA+AGG + chr2_3:14373097-14373116 Msa0280090:exon 45.0%
! CAAGAAGCACAGGCATTAGA+GGG - chr2_3:14373525-14373544 None:intergenic 45.0%
! ACAAGAAGCACAGGCATTAG+AGG - chr2_3:14373526-14373545 None:intergenic 45.0%
CTAATGCCTGTGCTTCTTGT+AGG + chr2_3:14373526-14373545 Msa0280090:intron 45.0%
!! TAATCTGTCGAGAGCATCCT+CGG - chr2_3:14373568-14373587 None:intergenic 45.0%
TTCATACAGGTAGCTGCTGT+TGG - chr2_3:14373591-14373610 None:intergenic 45.0%
! TGTAGTTTGCCGTTCGAACA+TGG + chr2_3:14373663-14373682 Msa0280090:intron 45.0%
! GTAGTGGGATTTAGTGGCAA+AGG + chr2_3:14373818-14373837 Msa0280090:intron 45.0%
!!! TGCCGTTTTGTGTTGCTTGT+AGG + chr2_3:14373857-14373876 Msa0280090:intron 45.0%
!!! GCCGTTTTGTGTTGCTTGTA+GGG + chr2_3:14373858-14373877 Msa0280090:intron 45.0%
CCCCTACAAGCAACACAAAA+CGG - chr2_3:14373862-14373881 None:intergenic 45.0%
!!! CCGTTTTGTGTTGCTTGTAG+GGG + chr2_3:14373859-14373878 Msa0280090:intron 45.0%
!!! CGTTTTGTGTTGCTTGTAGG+GGG + chr2_3:14373860-14373879 Msa0280090:intron 45.0%
!! GATGTTCTGGGAAGTACTCA+AGG + chr2_3:14373097-14373116 Msa0280090:exon 45.0%
! CAAGAAGCACAGGCATTAGA+GGG - chr2_3:14373525-14373544 None:intergenic 45.0%
! ACAAGAAGCACAGGCATTAG+AGG - chr2_3:14373526-14373545 None:intergenic 45.0%
CTAATGCCTGTGCTTCTTGT+AGG + chr2_3:14373526-14373545 Msa0280090:intron 45.0%
!! TAATCTGTCGAGAGCATCCT+CGG - chr2_3:14373568-14373587 None:intergenic 45.0%
TTCATACAGGTAGCTGCTGT+TGG - chr2_3:14373591-14373610 None:intergenic 45.0%
! TGTAGTTTGCCGTTCGAACA+TGG + chr2_3:14373663-14373682 Msa0280090:intron 45.0%
! GTAGTGGGATTTAGTGGCAA+AGG + chr2_3:14373818-14373837 Msa0280090:intron 45.0%
!!! TGCCGTTTTGTGTTGCTTGT+AGG + chr2_3:14373857-14373876 Msa0280090:intron 45.0%
!!! GCCGTTTTGTGTTGCTTGTA+GGG + chr2_3:14373858-14373877 Msa0280090:intron 45.0%
CCCCTACAAGCAACACAAAA+CGG - chr2_3:14373862-14373881 None:intergenic 45.0%
!!! CCGTTTTGTGTTGCTTGTAG+GGG + chr2_3:14373859-14373878 Msa0280090:intron 45.0%
!!! CGTTTTGTGTTGCTTGTAGG+GGG + chr2_3:14373860-14373879 Msa0280090:intron 45.0%
TTTGTGACAGGTTGCTCTCG+AGG + chr2_3:14373234-14373253 Msa0280090:CDS 50.0%
TGCTCTCGAGGACCATTACT+TGG + chr2_3:14373246-14373265 Msa0280090:CDS 50.0%
CGAGTCATCTTCTACCGGTA+TGG - chr2_3:14374590-14374609 None:intergenic 50.0%
TTTGTGACAGGTTGCTCTCG+AGG + chr2_3:14373234-14373253 Msa0280090:CDS 50.0%
TGCTCTCGAGGACCATTACT+TGG + chr2_3:14373246-14373265 Msa0280090:CDS 50.0%
CGAGTCATCTTCTACCGGTA+TGG - chr2_3:14374590-14374609 None:intergenic 50.0%
! TCCAGCCCTACAAGAAGCAC+AGG - chr2_3:14373535-14373554 None:intergenic 55.0%
TGTGCTTCTTGTAGGGCTGG+AGG + chr2_3:14373534-14373553 Msa0280090:intron 55.0%
! TCCAGCCCTACAAGAAGCAC+AGG - chr2_3:14373535-14373554 None:intergenic 55.0%
TGTGCTTCTTGTAGGGCTGG+AGG + chr2_3:14373534-14373553 Msa0280090:intron 55.0%
GCCTGTGCTTCTTGTAGGGC+TGG + chr2_3:14373531-14373550 Msa0280090:intron 60.0%
GGCTGGAGGTAATGCTACCG+AGG + chr2_3:14373548-14373567 Msa0280090:CDS 60.0%
GCCTGTGCTTCTTGTAGGGC+TGG + chr2_3:14373531-14373550 Msa0280090:intron 60.0%
GGCTGGAGGTAATGCTACCG+AGG + chr2_3:14373548-14373567 Msa0280090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 14373053 14374961 14373053 ID=Msa0280090;Name=Msa0280090
chr2_3 mRNA 14373053 14374961 14373053 ID=Msa0280090-mRNA-1;Parent=Msa0280090;Name=Msa0280090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|4|415|94
chr2_3 exon 14373053 14373153 14373053 ID=Msa0280090-mRNA-1:exon:6009;Parent=Msa0280090-mRNA-1
chr2_3 exon 14373233 14373304 14373233 ID=Msa0280090-mRNA-1:exon:6010;Parent=Msa0280090-mRNA-1
chr2_3 exon 14373548 14373637 14373548 ID=Msa0280090-mRNA-1:exon:6011;Parent=Msa0280090-mRNA-1
chr2_3 exon 14374480 14374961 14374480 ID=Msa0280090-mRNA-1:exon:6012;Parent=Msa0280090-mRNA-1
chr2_3 five_prime_UTR 14373053 14373097 14373053 ID=Msa0280090-mRNA-1:five_prime_utr;Parent=Msa0280090-mRNA-1
chr2_3 CDS 14373098 14373153 14373098 ID=Msa0280090-mRNA-1:cds;Parent=Msa0280090-mRNA-1
chr2_3 CDS 14373233 14373304 14373233 ID=Msa0280090-mRNA-1:cds;Parent=Msa0280090-mRNA-1
chr2_3 CDS 14373548 14373637 14373548 ID=Msa0280090-mRNA-1:cds;Parent=Msa0280090-mRNA-1
chr2_3 CDS 14374480 14374546 14374480 ID=Msa0280090-mRNA-1:cds;Parent=Msa0280090-mRNA-1
chr2_3 three_prime_UTR 14374547 14374961 14374547 ID=Msa0280090-mRNA-1:three_prime_utr;Parent=Msa0280090-mRNA-1
Gene Sequence

>Msa0280090

ATGTTCTGGGAAGTACTCAAGGGTTTTTCAATGGAAAACAGGAAGAAATTTTTAAAGTTTGTGACAGGTTGCTCTCGAGGACCATTACTTGGATTCCGATATCTTGAGCCTTTGTTCTGCATACAAAGGGCTGGAGGTAATGCTACCGAGGATGCTCTCGACAGATTACCAACAGCAGCTACCTGTATGAATCTGTTAAAACTTCCACCGTATAGAAGTAAGGATCAAATGGAATCCAAATTACTGTATGCCATAAATTCTGATGCTGGCTTTGATTTGAGCTAA

Protein sequence

>Msa0280090

MFWEVLKGFSMENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNATEDALDRLPTAATCMNLLKLPPYRSKDQMESKLLYAINSDAGFDLS*