AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0204010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204010 MtrunA17_Chr2g0302031 97.682 302 7 0 1 302 1 302 0.0 620
Msa0204010 MtrunA17_Chr4g0069811 66.230 305 85 7 8 302 33 329 4.14e-135 386
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204010 AT4G33140.1 60.573 279 80 5 36 300 86 348 8.02e-114 333

Find 92 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGATGTTATAGAATT+TGG 0.136918 2_1:-28810540 Msa0204010:three_prime_UTR
CATTGTTCTACTCAATTAAA+AGG 0.171958 2_1:-28815125 Msa0204010:five_prime_UTR
AATTCTATAACATCCTTTCT+AGG 0.179708 2_1:+28810543 None:intergenic
GAGAATGATTATGCAGAATT+TGG 0.187022 2_1:+28815054 None:intergenic
GTAATACTCTTCATAAATTA+AGG 0.187260 2_1:-28810804 Msa0204010:three_prime_UTR
CTTAAATCCTGCTTTGATAA+TGG 0.239195 2_1:-28814916 Msa0204010:CDS
TGCATAATCATTCTCATTCA+TGG 0.278164 2_1:-28815046 Msa0204010:exon
GGAAACCACTTTGCTCTTGA+TGG 0.302748 2_1:-28812349 Msa0204010:CDS
CGCATAATCCATGATGTTGC+AGG 0.313175 2_1:+28811052 None:intergenic
TCGATACTCATCAAATTATT+CGG 0.323569 2_1:-28813397 Msa0204010:CDS
GCACACTCCATTGCATATCT+TGG 0.332510 2_1:+28811235 None:intergenic
TGCAGGGCCATTTGAGCACC+TGG 0.362021 2_1:+28812580 None:intergenic
TTATGAGAAAATTTCTGATC+AGG 0.362724 2_1:+28814751 None:intergenic
CTGAGGTTAACAGAATTGTT+AGG 0.367219 2_1:-28814945 Msa0204010:CDS
TTGTGCACAAAGTTGAGAAC+TGG 0.382262 2_1:-28811129 Msa0204010:CDS
AATTTGTCTAATGCTGTGTT+TGG 0.393570 2_1:+28810854 None:intergenic
ATTATGAAAATTCGTATCCT+TGG 0.397134 2_1:-28811183 Msa0204010:CDS
ATCTCTTCGGCCGGCGAAGA+AGG 0.399595 2_1:-28810694 Msa0204010:three_prime_UTR
GAGACACCATATTTCAAGTC+AGG 0.403009 2_1:-28812616 Msa0204010:CDS
TCTCTATCCACTCAATTGTA+TGG 0.412670 2_1:+28812407 None:intergenic
TCCTGCTTTGATAATGGAAA+TGG 0.415904 2_1:-28814910 Msa0204010:CDS
CATCAGTGTGAACGTGGATT+TGG 0.417994 2_1:-28810895 Msa0204010:three_prime_UTR
TGGATCCCTGACTTGAAATA+TGG 0.424392 2_1:+28812610 None:intergenic
TACCTACAAATCTCTGACTT+TGG 0.428548 2_1:+28812316 None:intergenic
GACCAAAGTCAGAGATTTGT+AGG 0.439771 2_1:-28812318 Msa0204010:intron
AAACGTACGTTACAATTGAT+AGG 0.440063 2_1:+28812536 None:intergenic
ACTCCTAGCTTCCGTTTGGA+TGG 0.440589 2_1:-28810988 Msa0204010:three_prime_UTR
TAATACTCCTAGCTTCCGTT+TGG 0.441794 2_1:-28810992 Msa0204010:three_prime_UTR
CTCCTAGCTTCCGTTTGGAT+GGG 0.445395 2_1:-28810987 Msa0204010:three_prime_UTR
ACCTATCCCAGGTGCTCAAA+TGG 0.447702 2_1:-28812587 Msa0204010:CDS
ACCATTTCCATTATCAAAGC+AGG 0.452863 2_1:+28814909 None:intergenic
AAGGGTATTCCTGTCATTGA+TGG 0.457216 2_1:-28814841 Msa0204010:CDS
GAATAAGAAGAAGAAACAAA+AGG 0.457256 2_1:+28814967 None:intergenic
CACACTCCATTGCATATCTT+GGG 0.458461 2_1:+28811236 None:intergenic
AAATCATGTTAAATTGGCAC+TGG 0.460079 2_1:+28810939 None:intergenic
CACTTATAGTAATATCTCTT+CGG 0.468408 2_1:-28810707 Msa0204010:three_prime_UTR
AAAATCTTGATAATTTCTGC+AGG 0.470167 2_1:+28812563 None:intergenic
CGTCTTCAACTAACCTAGAA+AGG 0.476335 2_1:-28810556 Msa0204010:three_prime_UTR
GAAGACGTGCAAATGAGGTC+AGG 0.483842 2_1:-28810449 Msa0204010:three_prime_UTR
TGTTTCTTCTTCTTATTCTG+AGG 0.488487 2_1:-28814962 Msa0204010:CDS
TCCTAGCTTCCGTTTGGATG+GGG 0.491981 2_1:-28810986 Msa0204010:three_prime_UTR
TCTTCGGCCGGCGAAGAAGG+TGG 0.495477 2_1:-28810691 Msa0204010:three_prime_UTR
TTCTCAACTTTGTGCACAAG+AGG 0.495561 2_1:+28811133 None:intergenic
GTTGCTGTTGATGTTGATGA+AGG 0.503088 2_1:-28814721 Msa0204010:intron
TATGAGAAAATTTCTGATCA+GGG 0.503815 2_1:+28814752 None:intergenic
GTTCTTGTGAAATGAGAACT+TGG 0.504737 2_1:+28815003 None:intergenic
CAGTGTGAACGTGGATTTGG+TGG 0.505146 2_1:-28810892 Msa0204010:three_prime_UTR
GTTGTGCTTAGAATAGAAGA+AGG 0.505625 2_1:-28810768 Msa0204010:three_prime_UTR
TTTGAGCACCTGGGATAGGT+TGG 0.510876 2_1:+28812590 None:intergenic
ATCTCGGCAGAATGCAATCA+AGG 0.513617 2_1:-28812431 Msa0204010:CDS
GCAATGGAGTGTGCTGAAGC+TGG 0.518526 2_1:-28811226 Msa0204010:CDS
TTGTTTGATGAGATTCACTT+TGG 0.519259 2_1:-28812370 Msa0204010:CDS
TCATGTGTACGAGTTCTTCA+AGG 0.525104 2_1:-28813364 Msa0204010:intron
AATAAGAAGAAGAAACAAAA+GGG 0.528447 2_1:+28814968 None:intergenic
TGTCAGGTCTTTAAATGCCA+AGG 0.536186 2_1:-28811275 Msa0204010:intron
AAATACAAAGGGTTTAGAGA+AGG 0.537609 2_1:-28814860 Msa0204010:CDS
GTTATCATCAATAAGAACCT+TGG 0.540138 2_1:+28811258 None:intergenic
GCCATTTGAGCACCTGGGAT+AGG 0.544114 2_1:+28812586 None:intergenic
TGGAAATGGTAGTGTCAAGA+GGG 0.544495 2_1:-28814896 Msa0204010:CDS
TATAGTAATATCTCTTCGGC+CGG 0.546223 2_1:-28810703 Msa0204010:three_prime_UTR
AGAAAGCGAAAATGATGCTA+AGG 0.549298 2_1:-28810646 Msa0204010:three_prime_UTR
AGACACCATATTTCAAGTCA+GGG 0.550687 2_1:-28812615 Msa0204010:CDS
TGGAACTGTTCACGAGATGA+AGG 0.550851 2_1:-28812800 Msa0204010:intron
ATTTAAACGCCCCATCCAAA+CGG 0.552078 2_1:+28810977 None:intergenic
TCTTCGCCCACCTTCTTCGC+CGG 0.556224 2_1:+28810684 None:intergenic
AATACAAAGGGTTTAGAGAA+GGG 0.557276 2_1:-28814859 Msa0204010:CDS
CTTCGGCCGGCGAAGAAGGT+GGG 0.561801 2_1:-28810690 Msa0204010:three_prime_UTR
TAGTCGAAGACGTGCAAATG+AGG 0.564844 2_1:-28810454 Msa0204010:three_prime_UTR
AGGGTTGACAATGTTGAGAC+TGG 0.565697 2_1:-28810748 Msa0204010:three_prime_UTR
GCCCCATCCAAACGGAAGCT+AGG 0.567785 2_1:+28810985 None:intergenic
GAGACTAACTTGATAAGTAG+TGG 0.569820 2_1:-28810580 Msa0204010:three_prime_UTR
AATGGACTTATCTTAAAATG+TGG 0.571558 2_1:+28810422 None:intergenic
TTGTGCTTAGAATAGAAGAA+GGG 0.579555 2_1:-28810767 Msa0204010:three_prime_UTR
GGCGAAGAAGGTGGGCGAAG+AGG 0.588391 2_1:-28810682 Msa0204010:three_prime_UTR
TGTGCACAAAGTTGAGAACT+GGG 0.588436 2_1:-28811128 Msa0204010:CDS
ATGGAAATGGTAGTGTCAAG+AGG 0.596549 2_1:-28814897 Msa0204010:CDS
TGATAACCCAAGATATGCAA+TGG 0.600210 2_1:-28811242 Msa0204010:CDS
TCAGGGATCCAACCTATCCC+AGG 0.600533 2_1:-28812598 Msa0204010:CDS
GCAAACTCAGTCTTGCTCCA+AGG 0.602101 2_1:+28811166 None:intergenic
TTCTAGCATCAGTGTGAACG+TGG 0.604931 2_1:-28810901 Msa0204010:three_prime_UTR
AAGAGATATTACTATAAGTG+TGG 0.606053 2_1:+28810710 None:intergenic
AAATCTTGATAATTTCTGCA+GGG 0.610545 2_1:+28812564 None:intergenic
AATCATGTTAAATTGGCACT+GGG 0.614248 2_1:+28810940 None:intergenic
AATTGAGTAGAACAATGCAA+TGG 0.614572 2_1:+28815131 None:intergenic
ACACTCCATCAAGAGCAAAG+TGG 0.619283 2_1:+28812344 None:intergenic
TAATGCTGTGTTTGGAATAG+CGG 0.622443 2_1:+28810862 None:intergenic
TGCTGTGTTTGGAATAGCGG+TGG 0.624545 2_1:+28810865 None:intergenic
GCAGGGCCATTTGAGCACCT+GGG 0.630750 2_1:+28812581 None:intergenic
AAGACGTGCAAATGAGGTCA+GGG 0.630842 2_1:-28810448 Msa0204010:three_prime_UTR
TCAAGGACCATACAATTGAG+TGG 0.630919 2_1:-28812414 Msa0204010:CDS
ATTGTTGAACATAGATCACA+AGG 0.684890 2_1:-28814802 Msa0204010:CDS
GTTGAACATAGATCACAAGG+TGG 0.786868 2_1:-28814799 Msa0204010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTAAAAGTAGATG+AGG - chr2_1:28811077-28811096 Msa0204010:exon 15.0%
!!! AATTTATCTTATAGTTTTCA+AGG + chr2_1:28811311-28811330 None:intergenic 15.0%
!! TGAGATTATTTAATATTCTT+TGG - chr2_1:28812369-28812388 Msa0204010:CDS 15.0%
!! TAATAAACTGTGATTATAAT+AGG + chr2_1:28812432-28812451 None:intergenic 15.0%
!! TATTTAGGGAATAAAAATAT+AGG + chr2_1:28813324-28813343 None:intergenic 15.0%
!! TTTAGTGTAATTATATATGT+CGG - chr2_1:28813435-28813454 Msa0204010:CDS 15.0%
!! AGATTTAGTATATGTATAAT+TGG - chr2_1:28813600-28813619 Msa0204010:intron 15.0%
!! GTGATTCATTAAAATAAATT+GGG + chr2_1:28813646-28813665 None:intergenic 15.0%
!! AGTGATTCATTAAAATAAAT+TGG + chr2_1:28813647-28813666 None:intergenic 15.0%
!! TAAATCAAATGATAAAAAAG+TGG + chr2_1:28813726-28813745 None:intergenic 15.0%
!! ATACATTACGAATAAAAATA+CGG + chr2_1:28813837-28813856 None:intergenic 15.0%
!!! TCTATTATTATTTTGAACTA+TGG - chr2_1:28813949-28813968 Msa0204010:intron 15.0%
!! ATCTATAAACAATAAATCAT+TGG + chr2_1:28814278-28814297 None:intergenic 15.0%
!! TTGAAAAAATCATGTTAAAT+TGG + chr2_1:28814654-28814673 None:intergenic 15.0%
!! AATAAGAAGAAGAAACAAAA+GGG + chr2_1:28810619-28810638 None:intergenic 20.0%
!! AAGGATTAACATTTAACATA+GGG + chr2_1:28810908-28810927 None:intergenic 20.0%
!! AAAGGATTAACATTTAACAT+AGG + chr2_1:28810909-28810928 None:intergenic 20.0%
!!! TTCACCTTTTTATTTTTTCA+TGG - chr2_1:28810968-28810987 Msa0204010:three_prime_UTR 20.0%
!! AACACCATGAAAAAATAAAA+AGG + chr2_1:28810975-28810994 None:intergenic 20.0%
!! GTAGCATTTATAGTAAAAAA+AGG - chr2_1:28811172-28811191 Msa0204010:CDS 20.0%
!! AGATATAAAGATTAATGAGT+TGG - chr2_1:28811339-28811358 Msa0204010:intron 20.0%
!!! TAATGAGTTGGATATAAATA+TGG - chr2_1:28811351-28811370 Msa0204010:intron 20.0%
!! AGAGATTACTGAATATTAAA+CGG - chr2_1:28811648-28811667 Msa0204010:intron 20.0%
!! TAGAATGTGAAATGAATTAT+AGG - chr2_1:28812058-28812077 Msa0204010:intron 20.0%
!! AATACTGCATATAAAAGAAA+AGG + chr2_1:28812128-28812147 None:intergenic 20.0%
!!! TTTCTTTTATATGCAGTATT+AGG - chr2_1:28812128-28812147 Msa0204010:intron 20.0%
!! TGCTTACATATATAAAAACA+TGG - chr2_1:28812561-28812580 Msa0204010:CDS 20.0%
!!! CAAACTAAATGAGTTTTTAA+AGG + chr2_1:28812694-28812713 None:intergenic 20.0%
!! TGTTTGTTTGTATATGTTTA+TGG - chr2_1:28813126-28813145 Msa0204010:intron 20.0%
!! TAAAAATATAGGAGAAATGA+AGG + chr2_1:28813313-28813332 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG + chr2_1:28813410-28813429 None:intergenic 20.0%
!! TTTCTTAATTTATCCATACA+TGG - chr2_1:28813515-28813534 Msa0204010:intron 20.0%
!! AAGTTGACATAAAAAAAAAG+TGG + chr2_1:28813691-28813710 None:intergenic 20.0%
!! ATCAACATTGAAAGAAAAAA+AGG + chr2_1:28814240-28814259 None:intergenic 20.0%
!! GTAATACTCTTCATAAATTA+AGG - chr2_1:28814780-28814799 Msa0204010:CDS 20.0%
! CATTGTTCTACTCAATTAAA+AGG - chr2_1:28810459-28810478 Msa0204010:three_prime_UTR 25.0%
! GAATAAGAAGAAGAAACAAA+AGG + chr2_1:28810620-28810639 None:intergenic 25.0%
!!! TTTTTTGAAGGGAAATACAA+AGG - chr2_1:28810712-28810731 Msa0204010:three_prime_UTR 25.0%
!!! TTTTTGAAGGGAAATACAAA+GGG - chr2_1:28810713-28810732 Msa0204010:three_prime_UTR 25.0%
! TATGAGAAAATTTCTGATCA+GGG + chr2_1:28810835-28810854 None:intergenic 25.0%
! TTATGAGAAAATTTCTGATC+AGG + chr2_1:28810836-28810855 None:intergenic 25.0%
!! GAATGCATTCGAAATTTTAT+CGG - chr2_1:28810998-28811017 Msa0204010:three_prime_UTR 25.0%
! ACAACATTAGAGAGATAATT+GGG - chr2_1:28811149-28811168 Msa0204010:CDS 25.0%
! GCATTTATAGTAAAAAAAGG+TGG - chr2_1:28811175-28811194 Msa0204010:CDS 25.0%
! TTTATAGTAAAAAAAGGTGG+TGG - chr2_1:28811178-28811197 Msa0204010:CDS 25.0%
! AAACTAGACTTAGGTTATTT+GGG - chr2_1:28811201-28811220 Msa0204010:CDS 25.0%
! AGATAATGCTCTATCATATA+CGG + chr2_1:28811381-28811400 None:intergenic 25.0%
! GATATTTCCTATCTATAACA+CGG - chr2_1:28811676-28811695 Msa0204010:intron 25.0%
! TGTTAAACATGAAACTAACA+TGG - chr2_1:28812021-28812040 Msa0204010:intron 25.0%
! TCGATACTCATCAAATTATT+CGG - chr2_1:28812187-28812206 Msa0204010:intron 25.0%
! TCAATATGCATGTAGTATTA+TGG + chr2_1:28812336-28812355 None:intergenic 25.0%
! ACTACATGCATATTGATATT+TGG - chr2_1:28812340-28812359 Msa0204010:CDS 25.0%
! ACGCAAGATAATGAATAAAA+TGG + chr2_1:28812662-28812681 None:intergenic 25.0%
!! TTTTATTCATTATCTTGCGT+TGG - chr2_1:28812662-28812681 Msa0204010:intron 25.0%
! CATAAAATGAAACAACAGAA+CGG + chr2_1:28812823-28812842 None:intergenic 25.0%
!! AAATCTTGATAATTTCTGCA+GGG + chr2_1:28813023-28813042 None:intergenic 25.0%
!! AAAATCTTGATAATTTCTGC+AGG + chr2_1:28813024-28813043 None:intergenic 25.0%
!! ATTTTACTTCAATGTGTATC+AGG - chr2_1:28813079-28813098 Msa0204010:intron 25.0%
!! TTTTACTTCAATGTGTATCA+GGG - chr2_1:28813080-28813099 Msa0204010:intron 25.0%
!!! TAGGTGACATGTTTTATTTA+GGG + chr2_1:28813338-28813357 None:intergenic 25.0%
!!! ATAGGTGACATGTTTTATTT+AGG + chr2_1:28813339-28813358 None:intergenic 25.0%
!! AAAATATTGATAGCCATGTA+TGG + chr2_1:28813531-28813550 None:intergenic 25.0%
!!! GATGATATAGATTAGCTTAT+AGG - chr2_1:28813779-28813798 Msa0204010:intron 25.0%
! CAATTCATGATTCGAAAAAT+AGG - chr2_1:28813881-28813900 Msa0204010:intron 25.0%
! AATAATAATAGACACATGCA+TGG + chr2_1:28813941-28813960 None:intergenic 25.0%
! ACATTGAAAGAAAAAAAGGA+AGG + chr2_1:28814236-28814255 None:intergenic 25.0%
!! AATTTTCATAATCGAAGAGT+AGG + chr2_1:28814393-28814412 None:intergenic 25.0%
! ATTATGAAAATTCGTATCCT+TGG - chr2_1:28814401-28814420 Msa0204010:intron 25.0%
!!! TAACATGATTTTTTCAAAGC+TGG - chr2_1:28814657-28814676 Msa0204010:intron 25.0%
! AAGAGATATTACTATAAGTG+TGG + chr2_1:28814877-28814896 None:intergenic 25.0%
! CACTTATAGTAATATCTCTT+CGG - chr2_1:28814877-28814896 Msa0204010:CDS 25.0%
! GATACAACATTGAGTAAAAA+TGG + chr2_1:28814967-28814986 None:intergenic 25.0%
! AATTCTATAACATCCTTTCT+AGG + chr2_1:28815044-28815063 None:intergenic 25.0%
! AGAAAGGATGTTATAGAATT+TGG - chr2_1:28815044-28815063 Msa0204010:exon 25.0%
AATTGAGTAGAACAATGCAA+TGG + chr2_1:28810456-28810475 None:intergenic 30.0%
GAGAATGATTATGCAGAATT+TGG + chr2_1:28810533-28810552 None:intergenic 30.0%
TGCATAATCATTCTCATTCA+TGG - chr2_1:28810538-28810557 Msa0204010:three_prime_UTR 30.0%
TGTTTCTTCTTCTTATTCTG+AGG - chr2_1:28810622-28810641 Msa0204010:three_prime_UTR 30.0%
CTTAAATCCTGCTTTGATAA+TGG - chr2_1:28810668-28810687 Msa0204010:three_prime_UTR 30.0%
AAATACAAAGGGTTTAGAGA+AGG - chr2_1:28810724-28810743 Msa0204010:three_prime_UTR 30.0%
AATACAAAGGGTTTAGAGAA+GGG - chr2_1:28810725-28810744 Msa0204010:three_prime_UTR 30.0%
ATTGTTGAACATAGATCACA+AGG - chr2_1:28810782-28810801 Msa0204010:three_prime_UTR 30.0%
CCATCACTATGTAAGAATAA+AGG + chr2_1:28810927-28810946 None:intergenic 30.0%
CCTTTATTCTTACATAGTGA+TGG - chr2_1:28810924-28810943 Msa0204010:three_prime_UTR 30.0%
GACAACATTAGAGAGATAAT+TGG - chr2_1:28811148-28811167 Msa0204010:CDS 30.0%
CAACATTAGAGAGATAATTG+GGG - chr2_1:28811150-28811169 Msa0204010:CDS 30.0%
GAAACTAGACTTAGGTTATT+TGG - chr2_1:28811200-28811219 Msa0204010:CDS 30.0%
! TTGTTGTTAGTTTGAGTGAA+GGG - chr2_1:28811447-28811466 Msa0204010:intron 30.0%
ATATTCAGTAATCTCTGTCT+GGG + chr2_1:28811644-28811663 None:intergenic 30.0%
AATATTCAGTAATCTCTGTC+TGG + chr2_1:28811645-28811664 None:intergenic 30.0%
GATTACTGAATATTAAACGG+TGG - chr2_1:28811651-28811670 Msa0204010:intron 30.0%
!!! GTCAGACTATTCTAGAATTT+TGG - chr2_1:28811753-28811772 Msa0204010:intron 30.0%
!! GATTTGTTAAAGCAGTAACT+AGG + chr2_1:28812251-28812270 None:intergenic 30.0%
GCTTACAGTTACATTGTTAA+GGG + chr2_1:28812401-28812420 None:intergenic 30.0%
AGCTTACAGTTACATTGTTA+AGG + chr2_1:28812402-28812421 None:intergenic 30.0%
! CACAGTTTATTAGCTTCTAT+TGG - chr2_1:28812440-28812459 Msa0204010:intron 30.0%
! AGTTTATTAGCTTCTATTGG+AGG - chr2_1:28812443-28812462 Msa0204010:intron 30.0%
AAAGAAATGCATGAACCATA+AGG + chr2_1:28812480-28812499 None:intergenic 30.0%
ATATCTGTAAGGGAAATGAA+GGG + chr2_1:28812765-28812784 None:intergenic 30.0%
TCAAGCATAATGAACGAAAA+TGG + chr2_1:28812858-28812877 None:intergenic 30.0%
TCATGCTGCATAACAATAAT+TGG - chr2_1:28812888-28812907 Msa0204010:intron 30.0%
AAACGTACGTTACAATTGAT+AGG + chr2_1:28813051-28813070 None:intergenic 30.0%
ACACATTGAAGTAAAATCAG+TGG + chr2_1:28813076-28813095 None:intergenic 30.0%
ATATGTTTATGGTCAGATCT+CGG - chr2_1:28813137-28813156 Msa0204010:intron 30.0%
! TGGATAGAGAATAACTTTTC+AGG - chr2_1:28813190-28813209 Msa0204010:intron 30.0%
TTGTTTGATGAGATTCACTT+TGG - chr2_1:28813214-28813233 Msa0204010:intron 30.0%
AAATATAGGAGAAATGAAGG+TGG + chr2_1:28813310-28813329 None:intergenic 30.0%
GTAATTATATATGTCGGTGT+CGG - chr2_1:28813441-28813460 Msa0204010:CDS 30.0%
GGATAAATTAAGAAAGTGAC+AGG + chr2_1:28813510-28813529 None:intergenic 30.0%
ACTAAATCTACATATCGATC+AGG + chr2_1:28813589-28813608 None:intergenic 30.0%
!!! ATTATTTTGAACTATGGACC+CGG - chr2_1:28813955-28813974 Msa0204010:intron 30.0%
AAGGAAGGAAAAAAAAGACT+TGG + chr2_1:28814221-28814240 None:intergenic 30.0%
TAGATTCTTTATACGTTGTC+AGG - chr2_1:28814293-28814312 Msa0204010:intron 30.0%
GTTATCATCAATAAGAACCT+TGG + chr2_1:28814329-28814348 None:intergenic 30.0%
AATCATGTTAAATTGGCACT+GGG + chr2_1:28814647-28814666 None:intergenic 30.0%
AAATCATGTTAAATTGGCAC+TGG + chr2_1:28814648-28814667 None:intergenic 30.0%
AATTTGTCTAATGCTGTGTT+TGG + chr2_1:28814733-28814752 None:intergenic 30.0%
TTGTGCTTAGAATAGAAGAA+GGG - chr2_1:28814817-28814836 Msa0204010:CDS 30.0%
GTTCTTGTGAAATGAGAACT+TGG + chr2_1:28810584-28810603 None:intergenic 35.0%
CTGAGGTTAACAGAATTGTT+AGG - chr2_1:28810639-28810658 Msa0204010:three_prime_UTR 35.0%
!! TCCTGCTTTGATAATGGAAA+TGG - chr2_1:28810674-28810693 Msa0204010:three_prime_UTR 35.0%
ACCATTTCCATTATCAAAGC+AGG + chr2_1:28810678-28810697 None:intergenic 35.0%
!!! TGTCAAGAGGGTTTTTTTGA+AGG - chr2_1:28810700-28810719 Msa0204010:three_prime_UTR 35.0%
!!! GTCAAGAGGGTTTTTTTGAA+GGG - chr2_1:28810701-28810720 Msa0204010:three_prime_UTR 35.0%
! TCACATTTTCCATCAATGAC+AGG + chr2_1:28810755-28810774 None:intergenic 35.0%
! TTCGAAATTTTATCGGACAG+CGG - chr2_1:28811005-28811024 Msa0204010:three_prime_UTR 35.0%
AGTAAGGAGATTAGATCAGA+TGG - chr2_1:28811253-28811272 Msa0204010:CDS 35.0%
AAGGTAGTCAAATCACTAGA+GGG - chr2_1:28811276-28811295 Msa0204010:intron 35.0%
! GTTGTTGTTAGTTTGAGTGA+AGG - chr2_1:28811446-28811465 Msa0204010:intron 35.0%
! ATAGATTTTCTCCTCAAACC+GGG + chr2_1:28811534-28811553 None:intergenic 35.0%
! GATAGATTTTCTCCTCAAAC+CGG + chr2_1:28811535-28811554 None:intergenic 35.0%
ATGCATTGTTAAATGCAGGA+GGG + chr2_1:28811572-28811591 None:intergenic 35.0%
TACTGAATATTAAACGGTGG+TGG - chr2_1:28811654-28811673 Msa0204010:intron 35.0%
!!! AGATTTTTTGACAACCCTCA+TGG - chr2_1:28811853-28811872 Msa0204010:intron 35.0%
GTGGATATGATGGCTTAAAA+TGG - chr2_1:28811904-28811923 Msa0204010:intron 35.0%
GATATGATGGCTTAAAATGG+CGG - chr2_1:28811907-28811926 Msa0204010:intron 35.0%
!!! AATCTGGAACTGGTTTTACT+CGG - chr2_1:28811962-28811981 Msa0204010:intron 35.0%
ATGAAACAAATGCACATCAG+GGG + chr2_1:28812103-28812122 None:intergenic 35.0%
GATGAAACAAATGCACATCA+GGG + chr2_1:28812104-28812123 None:intergenic 35.0%
AGATGAAACAAATGCACATC+AGG + chr2_1:28812105-28812124 None:intergenic 35.0%
CAATTTCCAGCTAACTATCA+TGG + chr2_1:28812306-28812325 None:intergenic 35.0%
CATGATAGTTAGCTGGAAAT+TGG - chr2_1:28812304-28812323 Msa0204010:intron 35.0%
! ATTAGCTTCTATTGGAGGAT+TGG - chr2_1:28812448-28812467 Msa0204010:intron 35.0%
TTTCCCTGCATATTATGAAG+TGG - chr2_1:28812497-28812516 Msa0204010:intron 35.0%
TTCCCTGCATATTATGAAGT+GGG - chr2_1:28812498-28812517 Msa0204010:intron 35.0%
TTCCCACTTCATAATATGCA+GGG + chr2_1:28812503-28812522 None:intergenic 35.0%
CATATCTGTAAGGGAAATGA+AGG + chr2_1:28812766-28812785 None:intergenic 35.0%
CTTCATTTCCCTTACAGATA+TGG - chr2_1:28812764-28812783 Msa0204010:intron 35.0%
GAACAGTTCCATATCTGTAA+GGG + chr2_1:28812775-28812794 None:intergenic 35.0%
TGAACAGTTCCATATCTGTA+AGG + chr2_1:28812776-28812795 None:intergenic 35.0%
! AGACACCATATTTCAAGTCA+GGG - chr2_1:28812969-28812988 Msa0204010:intron 35.0%
TCTCTATCCACTCAATTGTA+TGG + chr2_1:28813180-28813199 None:intergenic 35.0%
TACCTACAAATCTCTGACTT+TGG + chr2_1:28813271-28813290 None:intergenic 35.0%
CAAAATACCGAGATTGAATC+TGG + chr2_1:28814056-28814075 None:intergenic 35.0%
TTTGCATTGTCTGAACAAGA+TGG - chr2_1:28814115-28814134 Msa0204010:intron 35.0%
TTGCATTGTCTGAACAAGAT+GGG - chr2_1:28814116-28814135 Msa0204010:intron 35.0%
CATATACACATTCGAGACAT+TGG + chr2_1:28814149-28814168 None:intergenic 35.0%
! CTGTCTATCTAGAGTGAATT+CGG + chr2_1:28814196-28814215 None:intergenic 35.0%
TGATAACCCAAGATATGCAA+TGG - chr2_1:28814342-28814361 Msa0204010:intron 35.0%
CTAAAAATCCTGCAACATCA+TGG - chr2_1:28814524-28814543 Msa0204010:intron 35.0%
! TAATGCTGTGTTTGGAATAG+CGG + chr2_1:28814725-28814744 None:intergenic 35.0%
GTTGTGCTTAGAATAGAAGA+AGG - chr2_1:28814816-28814835 Msa0204010:CDS 35.0%
TATAGTAATATCTCTTCGGC+CGG - chr2_1:28814881-28814900 Msa0204010:CDS 35.0%
AGAAAGCGAAAATGATGCTA+AGG - chr2_1:28814938-28814957 Msa0204010:CDS 35.0%
GAGACTAACTTGATAAGTAG+TGG - chr2_1:28815004-28815023 Msa0204010:CDS 35.0%
! ATGGAAATGGTAGTGTCAAG+AGG - chr2_1:28810687-28810706 Msa0204010:three_prime_UTR 40.0%
! TGGAAATGGTAGTGTCAAGA+GGG - chr2_1:28810688-28810707 Msa0204010:three_prime_UTR 40.0%
!! AAGGGTATTCCTGTCATTGA+TGG - chr2_1:28810743-28810762 Msa0204010:three_prime_UTR 40.0%
GTTGAACATAGATCACAAGG+TGG - chr2_1:28810785-28810804 Msa0204010:three_prime_UTR 40.0%
! GTTGCTGTTGATGTTGATGA+AGG - chr2_1:28810863-28810882 Msa0204010:three_prime_UTR 40.0%
AGTAGATGAGGATGTTGTGT+TGG - chr2_1:28811089-28811108 Msa0204010:CDS 40.0%
CTTAGGTTATTTGGGCATGT+AGG - chr2_1:28811209-28811228 Msa0204010:CDS 40.0%
TCTCCTTACTACCGAATCTA+CGG + chr2_1:28811243-28811262 None:intergenic 40.0%
AGGAGATTAGATCAGATGGA+AGG - chr2_1:28811257-28811276 Msa0204010:CDS 40.0%
GAAGGTAGTCAAATCACTAG+AGG - chr2_1:28811275-28811294 Msa0204010:intron 40.0%
AGTCAAATCACTAGAGGGAA+AGG - chr2_1:28811281-28811300 Msa0204010:intron 40.0%
! TTAGTTTGAGTGAAGGGACT+TGG - chr2_1:28811453-28811472 Msa0204010:intron 40.0%
TAGTTTGAGTGAAGGGACTT+GGG - chr2_1:28811454-28811473 Msa0204010:intron 40.0%
CATGCATTGTTAAATGCAGG+AGG + chr2_1:28811573-28811592 None:intergenic 40.0%
GGACATGCATTGTTAAATGC+AGG + chr2_1:28811576-28811595 None:intergenic 40.0%
TCCTATCTATAACACGGTTC+AGG - chr2_1:28811682-28811701 Msa0204010:intron 40.0%
TCCTGAACCGTGTTATAGAT+AGG + chr2_1:28811686-28811705 None:intergenic 40.0%
ACTAATTCATGCACTCAGTG+AGG + chr2_1:28811735-28811754 None:intergenic 40.0%
!! GTGTTCTAAAAAATCAGCCG+TGG - chr2_1:28811818-28811837 Msa0204010:intron 40.0%
GGTTGTCAAAAAATCTGCCT+TGG + chr2_1:28811849-28811868 None:intergenic 40.0%
TTAAGCCATCATATCCACCA+TGG + chr2_1:28811902-28811921 None:intergenic 40.0%
!!! TGGCTTAAAATGGCGGATTT+TGG - chr2_1:28811914-28811933 Msa0204010:intron 40.0%
GTAAAACCAGTTCCAGATTG+CGG + chr2_1:28811961-28811980 None:intergenic 40.0%
TGAAACAAATGCACATCAGG+GGG + chr2_1:28812102-28812121 None:intergenic 40.0%
TCATGTGTACGAGTTCTTCA+AGG - chr2_1:28812220-28812239 Msa0204010:intron 40.0%
TTGACTCCATGATAGTTAGC+TGG - chr2_1:28812297-28812316 Msa0204010:intron 40.0%
GAGGATTGGAATTCACCTTA+TGG - chr2_1:28812462-28812481 Msa0204010:intron 40.0%
GTTCCCACTTCATAATATGC+AGG + chr2_1:28812504-28812523 None:intergenic 40.0%
! GCATTAGAAAAGAGTGCAGA+AGG + chr2_1:28812529-28812548 None:intergenic 40.0%
! CTGTTCTTTCGACGTTTTCT+TGG - chr2_1:28812604-28812623 Msa0204010:CDS 40.0%
ATAAAATGGCTCGAGAGAAG+AGG + chr2_1:28812648-28812667 None:intergenic 40.0%
! GAGACACCATATTTCAAGTC+AGG - chr2_1:28812968-28812987 Msa0204010:intron 40.0%
! TGGATCCCTGACTTGAAATA+TGG + chr2_1:28812977-28812996 None:intergenic 40.0%
TCAAGGACCATACAATTGAG+TGG - chr2_1:28813170-28813189 Msa0204010:intron 40.0%
GACCAAAGTCAGAGATTTGT+AGG - chr2_1:28813266-28813285 Msa0204010:intron 40.0%
TAGGAGAAATGAAGGTGGAT+AGG + chr2_1:28813305-28813324 None:intergenic 40.0%
AACATGTCACCTATGAAGCA+CGG - chr2_1:28813345-28813364 Msa0204010:intron 40.0%
TTGTCAGGGTACATATCGAA+CGG - chr2_1:28813996-28814015 Msa0204010:intron 40.0%
GAACGATCCAGATTCAATCT+CGG - chr2_1:28814046-28814065 Msa0204010:intron 40.0%
TGTGTATATGTTCGATCCCT+TGG - chr2_1:28814159-28814178 Msa0204010:intron 40.0%
TGTCAGGTCTTTAAATGCCA+AGG - chr2_1:28814309-28814328 Msa0204010:intron 40.0%
CACACTCCATTGCATATCTT+GGG + chr2_1:28814351-28814370 None:intergenic 40.0%
TTCTCAACTTTGTGCACAAG+AGG + chr2_1:28814454-28814473 None:intergenic 40.0%
TTGTGCACAAAGTTGAGAAC+TGG - chr2_1:28814455-28814474 Msa0204010:intron 40.0%
TGTGCACAAAGTTGAGAACT+GGG - chr2_1:28814456-28814475 Msa0204010:intron 40.0%
TAATACTCCTAGCTTCCGTT+TGG - chr2_1:28814592-28814611 Msa0204010:intron 40.0%
ATTTAAACGCCCCATCCAAA+CGG + chr2_1:28814610-28814629 None:intergenic 40.0%
CGTCTTCAACTAACCTAGAA+AGG - chr2_1:28815028-28815047 Msa0204010:CDS 40.0%
TTATCGGACAGCGGTAAAAC+CGG - chr2_1:28811014-28811033 Msa0204010:three_prime_UTR 45.0%
AGGATGTTGTGTTGGATGTG+TGG - chr2_1:28811097-28811116 Msa0204010:CDS 45.0%
!! AGGTGGTGGAAACTAGACTT+AGG - chr2_1:28811192-28811211 Msa0204010:CDS 45.0%
AGGAAGAAGTCCCGTAGATT+CGG - chr2_1:28811229-28811248 Msa0204010:CDS 45.0%
CTCCTTACTACCGAATCTAC+GGG + chr2_1:28811242-28811261 None:intergenic 45.0%
ATGTAATCGTCCCACTCAGT+GGG - chr2_1:28811413-28811432 Msa0204010:intron 45.0%
CAAGTCATATCCCACTGAGT+GGG + chr2_1:28811426-28811445 None:intergenic 45.0%
TCTTGCCTATGGAGTAAACC+CGG - chr2_1:28811513-28811532 Msa0204010:intron 45.0%
TCAAACCGGGTTTACTCCAT+AGG + chr2_1:28811521-28811540 None:intergenic 45.0%
! TATGGAGTAAACCCGGTTTG+AGG - chr2_1:28811520-28811539 Msa0204010:intron 45.0%
! AATGCAGGAGGGAACTTGTT+CGG + chr2_1:28811561-28811580 None:intergenic 45.0%
! TCTCTGTCTGGGAACTTGTT+GGG + chr2_1:28811633-28811652 None:intergenic 45.0%
ATCTCTGTCTGGGAACTTGT+TGG + chr2_1:28811634-28811653 None:intergenic 45.0%
CCTTCACAAATTGGCCATGA+GGG + chr2_1:28811870-28811889 None:intergenic 45.0%
TCCTTCACAAATTGGCCATG+AGG + chr2_1:28811871-28811890 None:intergenic 45.0%
CATGGCCAATTTGTGAAGGA+TGG - chr2_1:28811871-28811890 Msa0204010:intron 45.0%
TGCCACCATCCTTCACAAAT+TGG + chr2_1:28811879-28811898 None:intergenic 45.0%
TGGAACTGTTCACGAGATGA+AGG - chr2_1:28812784-28812803 Msa0204010:intron 45.0%
ATCTCGGCAGAATGCAATCA+AGG - chr2_1:28813153-28813172 Msa0204010:intron 45.0%
GGAAACCACTTTGCTCTTGA+TGG - chr2_1:28813235-28813254 Msa0204010:intron 45.0%
ACACTCCATCAAGAGCAAAG+TGG + chr2_1:28813243-28813262 None:intergenic 45.0%
TGAAGGTGGATAGGACTAAG+TGG + chr2_1:28813296-28813315 None:intergenic 45.0%
TCACCTATGAAGCACGGATA+CGG - chr2_1:28813351-28813370 Msa0204010:intron 45.0%
TATGAAGCACGGACACTTCT+CGG + chr2_1:28813486-28813505 None:intergenic 45.0%
AAGTGACAGGCTATGAAGCA+CGG + chr2_1:28813497-28813516 None:intergenic 45.0%
GTACATATCGAACGGTACAG+TGG - chr2_1:28814004-28814023 Msa0204010:intron 45.0%
GCACACTCCATTGCATATCT+TGG + chr2_1:28814352-28814371 None:intergenic 45.0%
CGCATAATCCATGATGTTGC+AGG + chr2_1:28814535-28814554 None:intergenic 45.0%
TTCTAGCATCAGTGTGAACG+TGG - chr2_1:28814683-28814702 Msa0204010:intron 45.0%
CATCAGTGTGAACGTGGATT+TGG - chr2_1:28814689-28814708 Msa0204010:intron 45.0%
AGGGTTGACAATGTTGAGAC+TGG - chr2_1:28814836-28814855 Msa0204010:CDS 45.0%
TAGTCGAAGACGTGCAAATG+AGG - chr2_1:28815130-28815149 Msa0204010:five_prime_UTR 45.0%
AAGACGTGCAAATGAGGTCA+GGG - chr2_1:28815136-28815155 Msa0204010:five_prime_UTR 45.0%
GGTAAAACCGGCAATGTGGA+CGG - chr2_1:28811026-28811045 Msa0204010:three_prime_UTR 50.0%
GTAAAACCGGCAATGTGGAC+GGG - chr2_1:28811027-28811046 Msa0204010:three_prime_UTR 50.0%
TAAAACCGGCAATGTGGACG+GGG - chr2_1:28811028-28811047 Msa0204010:three_prime_UTR 50.0%
! GTCCCGTAGATTCGGTAGTA+AGG - chr2_1:28811237-28811256 Msa0204010:CDS 50.0%
CACTGAGTGGGACGATTACA+TGG + chr2_1:28811414-28811433 None:intergenic 50.0%
CATGTAATCGTCCCACTCAG+TGG - chr2_1:28811412-28811431 Msa0204010:intron 50.0%
CCAAGTCATATCCCACTGAG+TGG + chr2_1:28811427-28811446 None:intergenic 50.0%
CCACTCAGTGGGATATGACT+TGG - chr2_1:28811424-28811443 Msa0204010:intron 50.0%
! TGATCCTTGGCTCTTGCCTA+TGG - chr2_1:28811502-28811521 Msa0204010:intron 50.0%
TACTCCATAGGCAAGAGCCA+AGG + chr2_1:28811509-28811528 None:intergenic 50.0%
TGAGCATAGCTCAGTTGGCA+GGG + chr2_1:28811597-28811616 None:intergenic 50.0%
TGCCAACTGAGCTATGCTCA+CGG - chr2_1:28811597-28811616 Msa0204010:intron 50.0%
AATCTGCCTTGGCATTGCCA+CGG + chr2_1:28811838-28811857 None:intergenic 50.0%
CCCTCATGGCCAATTTGTGA+AGG - chr2_1:28811867-28811886 Msa0204010:intron 50.0%
GGCCAATTTGTGAAGGATGG+TGG - chr2_1:28811874-28811893 Msa0204010:intron 50.0%
!! TGGCACCATGGTGGATATGA+TGG - chr2_1:28811894-28811913 Msa0204010:intron 50.0%
!!! CGGATTTTGGCTTTCCTCCA+TGG - chr2_1:28811927-28811946 Msa0204010:intron 50.0%
TTTGAGCACCTGGGATAGGT+TGG + chr2_1:28812997-28813016 None:intergenic 50.0%
ACCTATCCCAGGTGCTCAAA+TGG - chr2_1:28812997-28813016 Msa0204010:intron 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr2_1:28813357-28813376 None:intergenic 50.0%
!! ATATGTCGGTGTCGGATACC+AGG - chr2_1:28813449-28813468 Msa0204010:intron 50.0%
!! TTCTCGGATTAGAGGTGTCC+TGG + chr2_1:28813470-28813489 None:intergenic 50.0%
! ACGGACACTTCTCGGATTAG+AGG + chr2_1:28813478-28813497 None:intergenic 50.0%
CTGACAACTAGTGACTGCAG+GGG + chr2_1:28813983-28814002 None:intergenic 50.0%
CCTGACAACTAGTGACTGCA+GGG + chr2_1:28813984-28814003 None:intergenic 50.0%
CCTGCAGTCACTAGTTGTCA+GGG - chr2_1:28813982-28814001 Msa0204010:intron 50.0%
CATATCGAACGGTACAGTGG+TGG - chr2_1:28814007-28814026 Msa0204010:intron 50.0%
ACAGTGGTGGCTGTTCAATC+AGG - chr2_1:28814020-28814039 Msa0204010:intron 50.0%
GCAAACTCAGTCTTGCTCCA+AGG + chr2_1:28814421-28814440 None:intergenic 50.0%
ACTCCTAGCTTCCGTTTGGA+TGG - chr2_1:28814596-28814615 Msa0204010:intron 50.0%
CTCCTAGCTTCCGTTTGGAT+GGG - chr2_1:28814597-28814616 Msa0204010:intron 50.0%
TCCTAGCTTCCGTTTGGATG+GGG - chr2_1:28814598-28814617 Msa0204010:intron 50.0%
CAGTGTGAACGTGGATTTGG+TGG - chr2_1:28814692-28814711 Msa0204010:intron 50.0%
! TGCTGTGTTTGGAATAGCGG+TGG + chr2_1:28814722-28814741 None:intergenic 50.0%
GAAGACGTGCAAATGAGGTC+AGG - chr2_1:28815135-28815154 Msa0204010:five_prime_UTR 50.0%
CAGCGGTAAAACCGGCAATG+TGG - chr2_1:28811022-28811041 Msa0204010:three_prime_UTR 55.0%
ACTTGGGCACCTTAAGCACG+TGG - chr2_1:28811470-28811489 Msa0204010:intron 55.0%
GCACCTTAAGCACGTGGTCT+AGG - chr2_1:28811476-28811495 Msa0204010:intron 55.0%
GAGCCTAGACCACGTGCTTA+AGG + chr2_1:28811482-28811501 None:intergenic 55.0%
! GTGGTCTAGGCTCTGATCCT+TGG - chr2_1:28811489-28811508 Msa0204010:intron 55.0%
GTGAGCATAGCTCAGTTGGC+AGG + chr2_1:28811598-28811617 None:intergenic 55.0%
GCCAACTGAGCTATGCTCAC+GGG - chr2_1:28811598-28811617 Msa0204010:intron 55.0%
CCAACTGAGCTATGCTCACG+GGG - chr2_1:28811599-28811618 Msa0204010:intron 55.0%
AATCAGCCGTGGCAATGCCA+AGG - chr2_1:28811829-28811848 Msa0204010:intron 55.0%
! TGTGAAGGATGGTGGCACCA+TGG - chr2_1:28811882-28811901 Msa0204010:intron 55.0%
AGATTGCGGCTGACAGACCA+TGG + chr2_1:28811947-28811966 None:intergenic 55.0%
ATGGTCTGTCAGCCGCAATC+TGG - chr2_1:28811946-28811965 Msa0204010:intron 55.0%
! TGTCAGCCGCAATCTGGAAC+TGG - chr2_1:28811952-28811971 Msa0204010:intron 55.0%
TCAGGGATCCAACCTATCCC+AGG - chr2_1:28812986-28813005 Msa0204010:intron 55.0%
GCCATTTGAGCACCTGGGAT+AGG + chr2_1:28813001-28813020 None:intergenic 55.0%
ACGGATACGGACACAGACAC+CGG - chr2_1:28813364-28813383 Msa0204010:intron 55.0%
CCCTGCAGTCACTAGTTGTC+AGG - chr2_1:28813981-28814000 Msa0204010:intron 55.0%
CCCTGACAACTAGTGACTGC+AGG + chr2_1:28813985-28814004 None:intergenic 55.0%
ATGTTCGATCCCTTGGCTGC+AGG - chr2_1:28814166-28814185 Msa0204010:intron 55.0%
TGTTCGATCCCTTGGCTGCA+GGG - chr2_1:28814167-28814186 Msa0204010:intron 55.0%
TTCGGATTCCCTGCAGCCAA+GGG + chr2_1:28814178-28814197 None:intergenic 55.0%
ATTCGGATTCCCTGCAGCCA+AGG + chr2_1:28814179-28814198 None:intergenic 55.0%
GCAATGGAGTGTGCTGAAGC+TGG - chr2_1:28814358-28814377 Msa0204010:intron 55.0%
CAACACCCCGTCCACATTGC+CGG + chr2_1:28811036-28811055 None:intergenic 60.0%
! GGCAATGTGGACGGGGTGTT+GGG - chr2_1:28811035-28811054 Msa0204010:three_prime_UTR 60.0%
CCCCGTGAGCATAGCTCAGT+TGG + chr2_1:28811602-28811621 None:intergenic 60.0%
! GAAGGATGGTGGCACCATGG+TGG - chr2_1:28811885-28811904 Msa0204010:intron 60.0%
TTGCGGCTGACAGACCATGG+AGG + chr2_1:28811944-28811963 None:intergenic 60.0%
GCAGGGCCATTTGAGCACCT+GGG + chr2_1:28813006-28813025 None:intergenic 60.0%
TGCAGGGCCATTTGAGCACC+TGG + chr2_1:28813007-28813026 None:intergenic 60.0%
CACAGACACCGGACACGACA+CGG - chr2_1:28813375-28813394 Msa0204010:CDS 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr2_1:28813386-28813405 None:intergenic 60.0%
ACTAGTGACTGCAGGGGAGC+CGG + chr2_1:28813977-28813996 None:intergenic 60.0%
GCCCCATCCAAACGGAAGCT+AGG + chr2_1:28814602-28814621 None:intergenic 60.0%
ATCTCTTCGGCCGGCGAAGA+AGG - chr2_1:28814890-28814909 Msa0204010:CDS 60.0%
TCTTCGCCCACCTTCTTCGC+CGG + chr2_1:28814903-28814922 None:intergenic 60.0%
CGGCAATGTGGACGGGGTGT+TGG - chr2_1:28811034-28811053 Msa0204010:three_prime_UTR 65.0%
CTAGTGACTGCAGGGGAGCC+GGG + chr2_1:28813976-28813995 None:intergenic 65.0%
TCTTCGGCCGGCGAAGAAGG+TGG - chr2_1:28814893-28814912 Msa0204010:CDS 65.0%
CTTCGGCCGGCGAAGAAGGT+GGG - chr2_1:28814894-28814913 Msa0204010:CDS 65.0%
GGCGAAGAAGGTGGGCGAAG+AGG - chr2_1:28814902-28814921 Msa0204010:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 28810424 28815182 28810424 ID=Msa0204010;Name=Msa0204010
chr2_1 mRNA 28810424 28815182 28810424 ID=Msa0204010-mRNA-1;Parent=Msa0204010;Name=Msa0204010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=133|1|1|1|1|1|6|663|303
chr2_1 exon 28810424 28811291 28810424 ID=Msa0204010-mRNA-1:exon:10385;Parent=Msa0204010-mRNA-1
chr2_1 exon 28812319 28812453 28812319 ID=Msa0204010-mRNA-1:exon:10384;Parent=Msa0204010-mRNA-1
chr2_1 exon 28812544 28812664 28812544 ID=Msa0204010-mRNA-1:exon:10383;Parent=Msa0204010-mRNA-1
chr2_1 exon 28812801 28812825 28812801 ID=Msa0204010-mRNA-1:exon:10382;Parent=Msa0204010-mRNA-1
chr2_1 exon 28813365 28813462 28813365 ID=Msa0204010-mRNA-1:exon:10381;Parent=Msa0204010-mRNA-1
chr2_1 exon 28814722 28815182 28814722 ID=Msa0204010-mRNA-1:exon:10380;Parent=Msa0204010-mRNA-1
chr2_1 five_prime_UTR 28815050 28815182 28815050 ID=Msa0204010-mRNA-1:five_prime_utr;Parent=Msa0204010-mRNA-1
chr2_1 CDS 28814722 28815049 28814722 ID=Msa0204010-mRNA-1:cds;Parent=Msa0204010-mRNA-1
chr2_1 CDS 28813365 28813462 28813365 ID=Msa0204010-mRNA-1:cds;Parent=Msa0204010-mRNA-1
chr2_1 CDS 28812801 28812825 28812801 ID=Msa0204010-mRNA-1:cds;Parent=Msa0204010-mRNA-1
chr2_1 CDS 28812544 28812664 28812544 ID=Msa0204010-mRNA-1:cds;Parent=Msa0204010-mRNA-1
chr2_1 CDS 28812319 28812453 28812319 ID=Msa0204010-mRNA-1:cds;Parent=Msa0204010-mRNA-1
chr2_1 CDS 28811087 28811291 28811087 ID=Msa0204010-mRNA-1:cds;Parent=Msa0204010-mRNA-1
chr2_1 three_prime_UTR 28810424 28811086 28810424 ID=Msa0204010-mRNA-1:three_prime_utr;Parent=Msa0204010-mRNA-1
Gene Sequence

>Msa0204010

ATGGCTCATTTGTTAAACTCTGATCCAAGTTCTCATTTCACAAGAACTTTTTGCAAATACCCTTTTGTTTCTTCTTCTTATTCTGAGGTTAACAGAATTGTTAGGTTCAATCTTAAATCCTGCTTTGATAATGGAAATGGTAGTGTCAAGAGGGTTTTTTTGAAGGGAAATACAAAGGGTTTAGAGAAGGGTATTCCTGTCATTGATGGAAAATGTGATGCTGCTATTGTTGAACATAGATCACAAGGTGGAAGTCACAATAGATCTTTTTGTTACCCTGATCAGAAATTTTCTCATAAGCTTGTAGTTGCTGTTGATGTTGATGAAGTATTAGGAAACTTCGTGTCAGCTCTGAACAAGTTCATAGCAGATCGATACTCATCAAATTATTCGGTTTCTGAGTATCATGTGTACGAGTTCTTCAAGATATGGAACTGTTCACGAGATGAAGCTAATAGTCGTGTTCATGAGTTTTTTGAGACACCATATTTCAAGTCAGGGATCCAACCTATCCCAGGTGCTCAAATGGCCCTGCAGAAATTATCAAGATTTTGTGACCTATCAATTGTAACATCTCGGCAGAATGCAATCAAGGACCATACAATTGAGTGGATAGAGAATAACTTTTCAGGATTGTTTGATGAGATTCACTTTGGAAACCACTTTGCTCTTGATGGAGTGTCAAGACCAAAGTCAGAGATTTGTAGGTCTTTAAATGCCAAGGTTCTTATTGATGATAACCCAAGATATGCAATGGAGTGTGCTGAAGCTGGAATTAGAGTCCTACTCTTCGATTATGAAAATTCGTATCCTTGGAGCAAGACTGAGTTTGCTTATCAACATCCTCTTGTGCACAAAGTTGAGAACTGGGAAGAAGTTGAACAAGAATTAATGTCATTAATAACTTTATAG
Protein sequence

>Msa0204010

MAHLLNSDPSSHFTRTFCKYPFVSSSYSEVNRIVRFNLKSCFDNGNGSVKRVFLKGNTKGLEKGIPVIDGKCDAAIVEHRSQGGSHNRSFCYPDQKFSHKLVVAVDVDEVLGNFVSALNKFIADRYSSNYSVSEYHVYEFFKIWNCSRDEANSRVHEFFETPYFKSGIQPIPGAQMALQKLSRFCDLSIVTSRQNAIKDHTIEWIENNFSGLFDEIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYAMECAEAGIRVLLFDYENSYPWSKTEFAYQHPLVHKVENWEEVEQELMSLITL*