AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337700 MtrunA17_Chr2g0325101 100.000 196 0 0 1 196 1 196 1.31e-147 407
Msa0337700 MtrunA17_Chr4g0037021 84.772 197 29 1 1 196 1 197 1.83e-126 354
Msa0337700 MtrunA17_Chr3g0117931 79.082 196 40 1 2 196 4 199 1.15e-117 332
Msa0337700 MtrunA17_Chr8g0371501 84.831 178 27 0 1 178 1 178 1.26e-116 329
Msa0337700 MtrunA17_Chr6g0486041 77.387 199 41 1 1 195 1 199 1.40e-116 330
Msa0337700 MtrunA17_Chr5g0405791 84.270 178 28 0 1 178 1 178 3.04e-115 326
Msa0337700 MtrunA17_Chr4g0046211 91.608 143 12 0 1 143 1 143 1.11e-97 279
Msa0337700 MtrunA17_Chr7g0265001 32.768 177 105 4 8 181 18 183 2.25e-28 105
Msa0337700 MtrunA17_Chr1g0212521 33.533 167 98 5 6 170 15 170 8.10e-27 101
Msa0337700 MtrunA17_Chr1g0182321 33.533 167 98 5 6 170 15 170 1.41e-26 100
Msa0337700 MtrunA17_Chr4g0030911 33.533 167 98 5 6 170 15 170 1.85e-26 100
Msa0337700 MtrunA17_Chr1g0182301 33.533 167 98 5 6 170 15 170 2.70e-26 100
Msa0337700 MtrunA17_Chr8g0384311 31.844 179 107 5 6 181 13 179 3.47e-26 99.8
Msa0337700 MtrunA17_Chr3g0130271 30.890 191 114 6 7 190 13 192 5.43e-26 99.4
Msa0337700 MtrunA17_Chr7g0263071 32.934 167 99 5 6 170 15 170 6.32e-26 99.4
Msa0337700 MtrunA17_Chr2g0290891 31.977 172 103 5 1 170 1 160 3.95e-25 97.1
Msa0337700 MtrunA17_Chr6g0458081 29.744 195 123 5 1 193 1 183 6.71e-25 96.7
Msa0337700 MtrunA17_Chr1g0159481 31.285 179 108 5 6 181 17 183 1.06e-24 96.3
Msa0337700 MtrunA17_Chr1g0199331 33.708 178 101 7 7 180 32 196 1.26e-24 95.5
Msa0337700 MtrunA17_Chr1g0180291 31.073 177 107 5 8 181 16 180 6.71e-24 94.0
Msa0337700 MtrunA17_Chr4g0055081 35.758 165 92 5 8 170 11 163 1.25e-23 93.2
Msa0337700 MtrunA17_Chr8g0335471 32.000 175 102 6 6 175 8 170 2.06e-22 89.7
Msa0337700 MtrunA17_Chr5g0400131 35.758 165 92 5 8 170 11 163 2.96e-22 89.7
Msa0337700 MtrunA17_Chr8g0381841 35.758 165 92 5 8 170 19 171 4.87e-22 89.4
Msa0337700 MtrunA17_Chr2g0319951 30.939 181 111 5 6 184 13 181 5.44e-22 89.0
Msa0337700 MtrunA17_Chr8g0349711 29.070 172 108 5 1 170 1 160 5.69e-22 89.0
Msa0337700 MtrunA17_Chr2g0327911 30.811 185 113 6 5 185 14 187 5.87e-22 89.0
Msa0337700 MtrunA17_Chr7g0250531 30.769 169 103 5 6 172 8 164 8.95e-22 88.2
Msa0337700 MtrunA17_Chr3g0123971 34.545 165 94 5 8 170 11 163 1.30e-21 87.8
Msa0337700 MtrunA17_Chr8g0382221 34.545 165 94 5 8 170 11 163 1.80e-21 87.4
Msa0337700 MtrunA17_Chr4g0055651 29.586 169 105 5 6 172 8 164 3.01e-21 86.7
Msa0337700 MtrunA17_Chr3g0123821 33.333 165 96 5 8 170 18 170 3.31e-21 87.0
Msa0337700 MtrunA17_Chr7g0231131 34.337 166 95 5 7 170 16 169 3.34e-21 87.0
Msa0337700 MtrunA17_Chr1g0174281 34.940 166 94 5 7 170 16 169 4.21e-21 87.0
Msa0337700 MtrunA17_Chr8g0390561 31.515 165 99 5 8 170 11 163 5.85e-21 85.9
Msa0337700 MtrunA17_Chr3g0112681 32.044 181 109 5 6 184 12 180 6.60e-21 86.3
Msa0337700 MtrunA17_Chr7g0275991 32.727 165 97 5 8 170 22 174 9.06e-21 86.3
Msa0337700 MtrunA17_Chr8g0346421 33.939 165 95 5 8 170 28 180 1.81e-20 85.5
Msa0337700 MtrunA17_Chr2g0276931 30.539 167 102 5 6 170 9 163 1.85e-20 84.7
Msa0337700 MtrunA17_Chr1g0197331 29.744 195 116 7 7 191 16 199 2.17e-20 84.7
Msa0337700 MtrunA17_Chr7g0234201 31.492 181 110 5 6 184 13 181 2.84e-20 84.3
Msa0337700 MtrunA17_Chr4g0032201 29.834 181 113 5 6 184 12 180 4.32e-20 84.0
Msa0337700 MtrunA17_Chr8g0349681 28.488 172 109 5 1 170 379 538 4.64e-20 87.0
Msa0337700 MtrunA17_Chr8g0349681 28.488 172 109 5 1 170 8 167 1.07e-19 86.3
Msa0337700 MtrunA17_Chr8g0349681 27.326 172 111 5 1 170 170 329 5.96e-19 84.0
Msa0337700 MtrunA17_Chr2g0276941 30.387 181 112 5 6 184 15 183 8.65e-20 83.2
Msa0337700 MtrunA17_Chr4g0040781 36.567 134 82 3 6 137 13 145 1.27e-19 82.8
Msa0337700 MtrunA17_Chr2g0315551 31.737 167 100 5 6 170 13 167 1.97e-19 82.4
Msa0337700 MtrunA17_Chr4g0046261 29.282 181 114 5 6 184 13 181 2.48e-19 82.0
Msa0337700 MtrunA17_Chr2g0283131 30.387 181 112 5 6 184 13 181 3.12e-19 81.6
Msa0337700 MtrunA17_Chr1g0201121 29.688 192 118 6 1 184 1 183 3.27e-19 81.6
Msa0337700 MtrunA17_Chr7g0214241 29.282 181 114 5 6 184 15 183 3.74e-19 81.6
Msa0337700 MtrunA17_Chr3g0109721 30.303 165 101 4 8 170 12 164 1.09e-18 80.1
Msa0337700 MtrunA17_Chr1g0189361 30.460 174 107 5 6 177 14 175 1.69e-18 80.1
Msa0337700 MtrunA17_Chr2g0331691 29.032 186 117 5 6 185 10 186 2.59e-18 79.3
Msa0337700 MtrunA17_Chr6g0466301 28.649 185 117 5 6 184 8 183 3.34e-18 79.0
Msa0337700 MtrunA17_Chr6g0465491 28.649 185 117 5 6 184 8 183 3.34e-18 79.0
Msa0337700 MtrunA17_Chr8g0383261 29.379 177 110 4 6 176 12 179 3.89e-18 78.6
Msa0337700 MtrunA17_Chr5g0433561 29.091 165 103 4 8 170 12 164 5.46e-18 78.2
Msa0337700 MtrunA17_Chr4g0034871 27.957 186 119 4 6 185 8 184 9.20e-18 77.8
Msa0337700 MtrunA17_Chr8g0351861 31.138 167 101 5 6 170 16 170 9.42e-18 78.2
Msa0337700 MtrunA17_Chr8g0392931 29.282 181 114 5 6 184 14 182 1.04e-17 77.8
Msa0337700 MtrunA17_Chr2g0325091 30.526 190 118 5 6 193 11 188 3.98e-17 76.3
Msa0337700 MtrunA17_Chr4g0004661 28.649 185 117 5 7 185 65 240 6.41e-17 76.6
Msa0337700 MtrunA17_Chr6g0482721 33.871 124 79 3 6 127 12 134 3.86e-16 73.6
Msa0337700 MtrunA17_Chr4g0046221 72.727 55 15 0 142 196 10 64 6.03e-15 66.6
Msa0337700 MtrunA17_Chr7g0259771 27.273 187 102 3 7 180 9 174 2.89e-14 70.5
Msa0337700 MtrunA17_Chr1g0185591 28.409 176 114 5 7 180 13 178 4.90e-13 67.0
Msa0337700 MtrunA17_Chr1g0191811 29.143 175 114 5 7 180 17 182 8.49e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337700 AT1G75840.1 85.204 196 29 0 1 196 1 196 2.91e-120 338
Msa0337700 AT4G35020.1 85.083 181 27 0 1 181 1 181 5.77e-120 338
Msa0337700 AT4G35020.2 85.083 181 27 0 1 181 1 181 5.77e-120 338
Msa0337700 AT4G35020.3 85.083 181 27 0 1 181 1 181 5.77e-120 338
Msa0337700 AT5G45970.1 81.095 201 33 1 1 196 1 201 1.61e-119 337
Msa0337700 AT1G20090.1 87.047 193 25 0 4 196 3 195 1.64e-119 337
Msa0337700 AT3G51300.1 85.955 178 25 0 1 178 1 178 1.06e-117 332
Msa0337700 AT2G17800.2 85.955 178 25 0 1 178 1 178 3.67e-117 331
Msa0337700 AT2G17800.1 85.955 178 25 0 1 178 1 178 3.67e-117 331
Msa0337700 AT4G35950.1 84.831 178 27 0 1 178 1 178 4.63e-116 328
Msa0337700 AT3G48040.1 82.123 179 32 0 2 180 4 182 7.49e-113 320
Msa0337700 AT5G62880.1 81.006 179 34 0 2 180 4 182 5.00e-112 318
Msa0337700 AT4G28950.1 76.684 193 41 2 1 191 1 191 2.76e-111 317
Msa0337700 AT2G44690.1 78.261 184 40 0 6 189 18 201 5.50e-109 311
Msa0337700 AT5G62880.2 79.070 172 32 1 2 173 4 171 2.62e-103 296
Msa0337700 AT3G48040.2 81.595 163 30 0 2 164 4 166 2.09e-102 293
Msa0337700 AT3G51290.2 85.517 145 21 0 34 178 635 779 1.01e-87 274
Msa0337700 AT4G35020.4 90.000 120 12 0 1 120 1 120 6.64e-81 237
Msa0337700 AT4G35020.5 90.000 120 12 0 1 120 1 120 6.64e-81 237
Msa0337700 AT1G43890.3 32.402 179 106 5 6 181 13 179 2.34e-26 100
Msa0337700 AT1G43890.1 32.402 179 106 5 6 181 13 179 2.34e-26 100
Msa0337700 AT1G43890.2 32.402 179 106 5 6 181 13 179 2.34e-26 100
Msa0337700 AT3G46060.2 33.533 167 98 5 6 170 15 170 2.98e-26 100
Msa0337700 AT3G46060.3 33.533 167 98 5 6 170 15 170 2.98e-26 100
Msa0337700 AT3G46060.1 33.533 167 98 5 6 170 15 170 2.98e-26 100
Msa0337700 AT4G35860.1 32.044 181 109 5 1 179 1 169 7.22e-26 99.4
Msa0337700 AT3G54840.1 33.333 177 103 5 7 180 34 198 9.07e-26 99.0
Msa0337700 AT3G53610.2 31.818 176 107 5 6 179 15 179 1.32e-25 99.0
Msa0337700 AT3G53610.3 31.818 176 107 5 6 179 15 179 1.32e-25 99.0
Msa0337700 AT3G53610.1 31.818 176 107 5 6 179 15 179 1.32e-25 99.0
Msa0337700 AT3G54840.2 33.929 168 96 5 7 171 34 189 1.59e-25 98.2
Msa0337700 AT5G59840.1 31.818 176 107 5 6 179 15 179 2.81e-25 98.2
Msa0337700 AT4G17170.1 31.977 172 103 5 1 170 1 160 3.31e-25 97.8
Msa0337700 AT3G54840.3 33.333 174 101 5 10 180 3 164 3.56e-25 96.7
Msa0337700 AT4G17160.1 30.814 172 105 5 1 170 1 160 1.11e-23 93.6
Msa0337700 AT1G18200.1 33.702 181 106 5 6 184 13 181 1.88e-23 93.6
Msa0337700 AT4G39890.1 35.294 170 94 6 4 170 8 164 4.30e-23 92.4
Msa0337700 AT1G16920.1 31.868 182 110 5 6 185 13 182 7.15e-23 91.7
Msa0337700 AT5G03530.2 29.944 177 109 5 8 181 15 179 1.19e-22 90.9
Msa0337700 AT5G03530.1 29.944 177 109 5 8 181 15 179 1.19e-22 90.9
Msa0337700 AT3G09900.1 33.523 176 104 5 6 179 15 179 1.25e-22 91.3
Msa0337700 AT1G73640.1 34.807 181 104 5 6 184 13 181 1.26e-22 91.7
Msa0337700 AT2G22290.1 36.364 165 91 5 8 170 11 163 2.01e-22 90.5
Msa0337700 AT1G02130.1 31.953 169 101 5 6 172 8 164 2.28e-22 90.1
Msa0337700 AT2G44610.1 35.758 165 92 5 8 170 11 163 5.78e-22 89.4
Msa0337700 AT5G45130.1 32.121 165 98 4 8 170 12 164 7.35e-22 88.6
Msa0337700 AT5G03520.1 33.523 176 104 5 6 179 15 179 1.13e-21 88.6
Msa0337700 AT4G19640.1 33.939 165 95 5 8 170 12 164 1.17e-21 88.2
Msa0337700 AT2G43130.1 30.220 182 113 5 6 185 12 181 1.61e-21 88.2
Msa0337700 AT5G10260.1 34.545 165 94 5 8 170 11 163 1.93e-21 87.8
Msa0337700 AT3G12160.1 35.152 165 93 5 8 170 17 169 2.28e-21 87.8
Msa0337700 AT3G11730.1 29.940 167 103 5 6 170 8 162 2.53e-21 87.4
Msa0337700 AT5G45130.2 31.902 163 97 4 10 170 22 172 2.79e-21 87.4
Msa0337700 AT1G09630.1 33.152 184 108 5 6 175 12 194 2.95e-21 87.4
Msa0337700 AT5G64990.1 35.758 165 92 5 8 170 9 161 4.48e-21 86.7
Msa0337700 AT2G31680.1 30.769 182 112 5 6 185 12 181 5.31e-21 87.0
Msa0337700 AT4G17530.1 30.481 187 111 7 6 185 8 182 1.05e-20 85.9
Msa0337700 AT5G47200.1 30.769 182 107 7 6 180 8 177 2.15e-20 84.7
Msa0337700 AT1G06400.1 32.609 184 107 6 6 187 13 181 3.24e-20 84.7
Msa0337700 AT1G22740.1 30.729 192 116 6 1 184 1 183 3.92e-20 84.3
Msa0337700 AT5G45750.1 32.335 167 99 5 6 170 13 167 6.90e-20 84.0
Msa0337700 AT5G65270.1 31.285 179 109 5 8 184 19 185 8.17e-20 84.0
Msa0337700 AT5G59150.1 30.387 181 112 5 6 184 12 180 8.32e-20 83.6
Msa0337700 AT4G18430.1 31.492 181 110 5 6 184 13 181 9.24e-20 83.6
Msa0337700 AT1G05810.1 30.220 182 113 5 6 185 12 181 9.52e-20 83.6
Msa0337700 AT4G18800.1 29.834 181 113 5 6 184 13 181 1.12e-19 83.2
Msa0337700 AT1G05810.2 31.579 171 103 5 6 174 58 216 1.23e-19 84.3
Msa0337700 AT5G47520.1 30.460 174 107 5 6 177 14 175 2.03e-19 82.8
Msa0337700 AT1G07410.1 29.834 181 113 5 6 184 12 180 2.19e-19 82.4
Msa0337700 AT3G15060.1 38.017 121 72 3 8 126 15 134 2.83e-19 82.4
Msa0337700 AT3G18820.1 29.032 186 117 5 6 185 8 184 2.97e-19 82.0
Msa0337700 AT4G19640.2 35.246 122 76 3 8 127 12 132 5.61e-19 79.7
Msa0337700 AT4G39990.1 30.723 166 101 5 8 171 19 172 6.77e-19 81.3
Msa0337700 AT3G46830.1 29.282 181 114 5 6 184 12 180 8.14e-19 81.3
Msa0337700 AT3G46830.2 29.282 181 114 5 6 184 12 180 8.14e-19 81.3
Msa0337700 AT3G07410.1 29.282 181 114 5 6 184 12 180 1.43e-18 80.5
Msa0337700 AT5G60860.1 36.585 123 75 3 6 126 13 134 1.49e-18 80.5
Msa0337700 AT5G47960.1 32.121 165 98 5 8 170 17 169 1.56e-18 80.5
Msa0337700 AT4G19640.3 35.246 122 76 3 8 127 12 132 1.66e-18 79.7
Msa0337700 AT1G28550.1 37.398 123 74 3 6 126 13 134 1.76e-18 80.1
Msa0337700 AT5G64990.2 34.302 172 92 6 8 170 9 168 2.06e-18 80.1
Msa0337700 AT2G21880.1 27.174 184 121 3 6 184 9 184 4.60e-18 79.0
Msa0337700 AT1G01200.1 32.121 165 99 5 8 170 30 183 6.55e-18 79.0
Msa0337700 AT2G33870.1 37.398 123 74 3 6 126 13 134 7.87e-18 78.6
Msa0337700 AT4G35860.2 32.090 134 78 4 47 179 2 123 1.94e-17 76.3
Msa0337700 AT1G52280.1 29.508 183 112 6 1 175 1 174 2.86e-17 76.6
Msa0337700 AT3G16100.1 28.495 186 118 5 6 185 8 184 9.88e-17 75.5
Msa0337700 AT4G09720.1 27.604 192 122 6 1 184 1 183 3.13e-16 73.9
Msa0337700 AT1G49300.2 29.240 171 106 5 6 170 8 169 6.20e-16 73.2
Msa0337700 AT1G49300.1 29.240 171 106 5 6 170 8 169 6.20e-16 73.2
Msa0337700 AT5G03520.2 33.582 134 77 4 47 179 47 169 1.40e-15 72.4
Msa0337700 AT3G09910.3 26.966 178 115 5 7 181 14 179 1.56e-15 72.0
Msa0337700 AT3G09910.1 26.966 178 115 5 7 181 14 179 1.56e-15 72.0
Msa0337700 AT3G09910.2 26.966 178 115 5 7 181 14 179 1.56e-15 72.0
Msa0337700 AT5G55080.1 32.479 117 77 2 7 122 14 129 3.53e-15 71.6
Msa0337700 AT3G09910.5 28.736 174 108 6 7 176 14 175 4.73e-15 70.5
Msa0337700 AT3G09910.4 28.736 174 108 6 7 176 14 175 4.73e-15 70.5
Msa0337700 AT4G09720.4 26.396 197 123 5 1 184 1 188 7.48e-15 70.5
Msa0337700 AT5G27540.1 25.843 178 124 3 3 180 14 183 7.48e-15 72.4
Msa0337700 AT5G27540.2 25.843 178 124 3 3 180 14 183 7.48e-15 72.4
Msa0337700 AT5G39620.1 26.943 193 128 4 7 194 6 190 1.24e-14 69.7
Msa0337700 AT3G63150.1 29.143 175 114 4 7 180 15 180 2.01e-14 71.2
Msa0337700 AT4G09720.3 25.616 203 123 5 1 184 1 194 6.25e-14 68.2
Msa0337700 AT5G59150.2 29.496 139 85 4 47 184 3 129 6.64e-13 64.3
Msa0337700 AT2G21880.4 25.749 167 111 3 23 184 1 159 4.00e-12 62.4
Msa0337700 AT2G21880.3 25.749 167 111 3 23 184 1 159 4.00e-12 62.4

Find 60 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCTTTCTGTTTCTTTA+AGG 0.156260 2_4:-57787011 None:intergenic
GCACAGTTAATCTTGGATTA+TGG 0.198843 2_4:+57787552 Msa0337700:CDS
TCAATACAAGCAGGAGAATT+TGG 0.242087 2_4:+57789092 Msa0337700:three_prime_UTR
TGCTGTGACATTTGATTTCA+TGG 0.261322 2_4:+57788893 Msa0337700:three_prime_UTR
CAAACATGAATACCGATTAA+AGG 0.301861 2_4:-57788862 None:intergenic
TTTAGAGATATTCTCATAAC+TGG 0.310909 2_4:-57787960 None:intergenic
TTATGAGAATATCTCTAAAA+AGG 0.315067 2_4:+57787964 Msa0337700:CDS
TGTTTAGCTCCTACCAAGTT+TGG 0.332301 2_4:-57788130 None:intergenic
TTAGCTTTCTGTTTCTTTAA+GGG 0.348554 2_4:-57787010 None:intergenic
CTTTAATCGGTATTCATGTT+TGG 0.355137 2_4:+57788863 Msa0337700:exon
CACAGTTAATCTTGGATTAT+GGG 0.369623 2_4:+57787553 Msa0337700:CDS
TGTTCCTAGTTATATGTAAC+TGG 0.376841 2_4:+57788996 Msa0337700:three_prime_UTR
GGGAAGTGAAGCATTTAATA+AGG 0.384022 2_4:-57787089 None:intergenic
AGTGCAAATGTTGTGGTTGA+TGG 0.385099 2_4:+57787527 Msa0337700:CDS
TTGGAATACATTTGTTCAAA+AGG 0.391256 2_4:-57788921 None:intergenic
CAGGACAAGAGGATTATAAC+AGG 0.405871 2_4:+57787873 Msa0337700:intron
CTTAGGCCTTTGAGCTATAG+AGG 0.408891 2_4:+57787896 Msa0337700:CDS
GATGGCAGCACAGTTAATCT+TGG 0.412892 2_4:+57787545 Msa0337700:CDS
TTGCAGATTTGAGGGAAGAT+AGG 0.415340 2_4:+57788246 Msa0337700:intron
GGAGCATAATGTCTCAGTTC+AGG 0.421519 2_4:-57788081 None:intergenic
TGTAGTGTTAAGAAAGAAAA+GGG 0.422884 2_4:-57787142 None:intergenic
TTGGTTCCCACAAGTACAAT+TGG 0.428473 2_4:-57788111 None:intergenic
TTATTGACTTGCAGATTTGA+GGG 0.432204 2_4:+57788238 Msa0337700:intron
ATTATTGACTTGCAGATTTG+AGG 0.438305 2_4:+57788237 Msa0337700:intron
GAAGAGCTGAAGAGGGCAAT+TGG 0.442300 2_4:+57788552 Msa0337700:CDS
TTCATCAAATGTGTTACTGT+TGG 0.452151 2_4:+57787320 Msa0337700:CDS
GTGTAGTGTTAAGAAAGAAA+AGG 0.474046 2_4:-57787143 None:intergenic
GTAGTTATAGCTGTAGCTCC+TGG 0.478794 2_4:-57788287 None:intergenic
GTACTTGTGGGAACCAAACT+TGG 0.487335 2_4:+57788117 Msa0337700:CDS
AAGAGGATTATAACAGGCTT+AGG 0.490120 2_4:+57787879 Msa0337700:CDS
TGTGTTTGATGCTGCAATCA+AGG 0.491064 2_4:+57788781 Msa0337700:CDS
AACTGAAAGAAAGTAGAGCT+TGG 0.498823 2_4:-57788940 None:intergenic
CTTGTTTGGTGTTGTAGTAG+TGG 0.499810 2_4:-57786954 None:intergenic
ACAAGTACAATTGGCACAGT+TGG 0.513226 2_4:-57788102 None:intergenic
AGGAGCAGATGTGTTCTTGT+TGG 0.514278 2_4:+57787916 Msa0337700:CDS
ATTTAATAAGGCAAGTCCTA+TGG 0.517827 2_4:-57787077 None:intergenic
GGCTCTGCTGAGTAGTGAAA+AGG 0.521685 2_4:-57787939 None:intergenic
TTTCTGTTTCTTTAAGGGGA+AGG 0.524640 2_4:-57787005 None:intergenic
AACTGTGCCAATTGTACTTG+TGG 0.525586 2_4:+57788104 Msa0337700:CDS
TGCAATATTTCAGAATGTGA+AGG 0.527117 2_4:+57788757 Msa0337700:intron
TATCGATCGTCAATACAAGC+AGG 0.530556 2_4:+57789083 Msa0337700:three_prime_UTR
TAGCTTTCTGTTTCTTTAAG+GGG 0.533652 2_4:-57787009 None:intergenic
CTTATCACAAAATTTATCCA+TGG 0.538708 2_4:-57789023 None:intergenic
TACAAGCAGGAGAATTTGGT+TGG 0.540898 2_4:+57789096 Msa0337700:three_prime_UTR
CACACTAAAGTTGGTGCCAT+AGG 0.549969 2_4:+57787061 Msa0337700:five_prime_UTR
TACAGCTATAACTACTGCCC+AGG 0.559919 2_4:+57788295 Msa0337700:CDS
ATGCAGCTCAAAGACTCAGC+AGG 0.566907 2_4:+57788593 Msa0337700:CDS
CTTGGATTATGGGACACTGC+TGG 0.569014 2_4:+57787563 Msa0337700:CDS
GGCAGGGTGAAGAGCTGAAG+AGG 0.570105 2_4:+57788544 Msa0337700:intron
CAGTATTTGATTGATCATCC+AGG 0.575063 2_4:+57788269 Msa0337700:CDS
CAGTGATGAAAACAACAAAA+CGG 0.589997 2_4:+57787234 Msa0337700:five_prime_UTR
ACTGTGCCAATTGTACTTGT+GGG 0.592943 2_4:+57788105 Msa0337700:CDS
ATATCCAGTTACATATAACT+AGG 0.598387 2_4:-57789000 None:intergenic
TATATGTAACTGGATATCCA+TGG 0.598619 2_4:+57789006 Msa0337700:three_prime_UTR
CACAAGCAATACATTCCCTA+CGG 0.607441 2_4:+57787382 Msa0337700:CDS
ACTGTTGGAGATGGTGCTGT+TGG 0.608648 2_4:+57787335 Msa0337700:CDS
TAACTTCAGTGCAAATGTTG+TGG 0.625689 2_4:+57787520 Msa0337700:CDS
TCTGCTCCTCTATAGCTCAA+AGG 0.639148 2_4:-57787902 None:intergenic
AAATGTGTTACTGTTGGAGA+TGG 0.644647 2_4:+57787326 Msa0337700:CDS
GCAGGGTGAAGAGCTGAAGA+GGG 0.664533 2_4:+57788545 Msa0337700:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTCATAAAAATTC+AGG + chr2_4:57787854-57787873 Msa0337700:intron 10.0%
!! TAAACATATATAACTTAATT+GGG + chr2_4:57788147-57788166 Msa0337700:intron 10.0%
!! GTAGTAATTTAATAATTAAT+TGG + chr2_4:57788205-57788224 Msa0337700:intron 10.0%
!! ACAAATAATGTAAAATTTAT+GGG + chr2_4:57788523-57788542 Msa0337700:intron 10.0%
!!! TAATTTTTTCATAAAAATTC+AGG + chr2_4:57787854-57787873 Msa0337700:intron 10.0%
!! TAAACATATATAACTTAATT+GGG + chr2_4:57788147-57788166 Msa0337700:intron 10.0%
!! GTAGTAATTTAATAATTAAT+TGG + chr2_4:57788205-57788224 Msa0337700:intron 10.0%
!! ACAAATAATGTAAAATTTAT+GGG + chr2_4:57788523-57788542 Msa0337700:intron 10.0%
!!! ATTTGAATTTTGAATTGAAA+AGG - chr2_4:57787117-57787136 None:intergenic 15.0%
!!! TAACAAATTTAGTTTATGTT+TGG + chr2_4:57787437-57787456 Msa0337700:intron 15.0%
!! ACAAATTATAAATCGTAAAA+CGG - chr2_4:57787619-57787638 None:intergenic 15.0%
!! ATGAAAAAATTAGTAAATCT+TGG - chr2_4:57787846-57787865 None:intergenic 15.0%
!! CTAAACATATATAACTTAAT+TGG + chr2_4:57788146-57788165 Msa0337700:intron 15.0%
!! TAATTATTAAATTACTACCA+AGG - chr2_4:57788203-57788222 None:intergenic 15.0%
!! CACAAATAATGTAAAATTTA+TGG + chr2_4:57788522-57788541 Msa0337700:intron 15.0%
!! TTAACATAATCAGAAATTAT+TGG + chr2_4:57788661-57788680 Msa0337700:intron 15.0%
!!! ATTTGAATTTTGAATTGAAA+AGG - chr2_4:57787117-57787136 None:intergenic 15.0%
!!! TAACAAATTTAGTTTATGTT+TGG + chr2_4:57787437-57787456 Msa0337700:intron 15.0%
!! ACAAATTATAAATCGTAAAA+CGG - chr2_4:57787619-57787638 None:intergenic 15.0%
!! ATGAAAAAATTAGTAAATCT+TGG - chr2_4:57787846-57787865 None:intergenic 15.0%
!! CTAAACATATATAACTTAAT+TGG + chr2_4:57788146-57788165 Msa0337700:intron 15.0%
!! TAATTATTAAATTACTACCA+AGG - chr2_4:57788203-57788222 None:intergenic 15.0%
!! CACAAATAATGTAAAATTTA+TGG + chr2_4:57788522-57788541 Msa0337700:intron 15.0%
!! TTAACATAATCAGAAATTAT+TGG + chr2_4:57788661-57788680 Msa0337700:intron 15.0%
!!! TTATGAGAATATCTCTAAAA+AGG + chr2_4:57787964-57787983 Msa0337700:CDS 20.0%
!!! TTCACTTGTGAATTTTTATA+TGG + chr2_4:57788007-57788026 Msa0337700:intron 20.0%
!! ATTCCAAATAGTATTTAAGT+TGG + chr2_4:57788403-57788422 Msa0337700:intron 20.0%
!! CATATATAGTTATATACTCA+TGG + chr2_4:57788633-57788652 Msa0337700:intron 20.0%
!!! TTTCTTTTTTTCTTTTGCTT+AGG - chr2_4:57788821-57788840 None:intergenic 20.0%
!!! ATCATGTATTTTCCTTTAAT+CGG + chr2_4:57788850-57788869 Msa0337700:exon 20.0%
!!! TTCTTGTATTTTTTTGTTGA+TGG + chr2_4:57788963-57788982 Msa0337700:three_prime_UTR 20.0%
!!! TTATGAGAATATCTCTAAAA+AGG + chr2_4:57787964-57787983 Msa0337700:CDS 20.0%
!!! TTCACTTGTGAATTTTTATA+TGG + chr2_4:57788007-57788026 Msa0337700:intron 20.0%
!! ATTCCAAATAGTATTTAAGT+TGG + chr2_4:57788403-57788422 Msa0337700:intron 20.0%
!! CATATATAGTTATATACTCA+TGG + chr2_4:57788633-57788652 Msa0337700:intron 20.0%
!!! TTTCTTTTTTTCTTTTGCTT+AGG - chr2_4:57788821-57788840 None:intergenic 20.0%
!!! ATCATGTATTTTCCTTTAAT+CGG + chr2_4:57788850-57788869 Msa0337700:exon 20.0%
!!! TTCTTGTATTTTTTTGTTGA+TGG + chr2_4:57788963-57788982 Msa0337700:three_prime_UTR 20.0%
!!! AGTTTTTAGATCAGCAAAAA+AGG - chr2_4:57786981-57787000 None:intergenic 25.0%
!! TTAGCTTTCTGTTTCTTTAA+GGG - chr2_4:57787013-57787032 None:intergenic 25.0%
!!! TTTAGCTTTCTGTTTCTTTA+AGG - chr2_4:57787014-57787033 None:intergenic 25.0%
!! AATTTTGAATTGAAAAGGAG+GGG - chr2_4:57787112-57787131 None:intergenic 25.0%
!! GAATTTTGAATTGAAAAGGA+GGG - chr2_4:57787113-57787132 None:intergenic 25.0%
!! TGAATTTTGAATTGAAAAGG+AGG - chr2_4:57787114-57787133 None:intergenic 25.0%
! TGTAGTGTTAAGAAAGAAAA+GGG - chr2_4:57787145-57787164 None:intergenic 25.0%
!!! GTTCAAATATTTTCTAGTGA+AGG + chr2_4:57787193-57787212 Msa0337700:five_prime_UTR 25.0%
!!! CTTGTTCTTGTTTTTTTTGA+AGG + chr2_4:57787475-57787494 Msa0337700:intron 25.0%
! TAAGTAGCAAAGACATTTAA+CGG + chr2_4:57787652-57787671 Msa0337700:intron 25.0%
! TTTAGAGATATTCTCATAAC+TGG - chr2_4:57787963-57787982 None:intergenic 25.0%
! TCATACAAATTTGTAGGAAT+TGG + chr2_4:57788322-57788341 Msa0337700:intron 25.0%
! ATGCCAACTTAAATACTATT+TGG - chr2_4:57788409-57788428 None:intergenic 25.0%
! ATAATGTAAAATTTATGGGC+AGG + chr2_4:57788527-57788546 Msa0337700:intron 25.0%
! TAATGTAAAATTTATGGGCA+GGG + chr2_4:57788528-57788547 Msa0337700:intron 25.0%
! TTGGAATACATTTGTTCAAA+AGG - chr2_4:57788924-57788943 None:intergenic 25.0%
! ATATCCAGTTACATATAACT+AGG - chr2_4:57789003-57789022 None:intergenic 25.0%
! CTTATCACAAAATTTATCCA+TGG - chr2_4:57789026-57789045 None:intergenic 25.0%
!!! AGTTTTTAGATCAGCAAAAA+AGG - chr2_4:57786981-57787000 None:intergenic 25.0%
!! TTAGCTTTCTGTTTCTTTAA+GGG - chr2_4:57787013-57787032 None:intergenic 25.0%
!!! TTTAGCTTTCTGTTTCTTTA+AGG - chr2_4:57787014-57787033 None:intergenic 25.0%
!! AATTTTGAATTGAAAAGGAG+GGG - chr2_4:57787112-57787131 None:intergenic 25.0%
!! GAATTTTGAATTGAAAAGGA+GGG - chr2_4:57787113-57787132 None:intergenic 25.0%
!! TGAATTTTGAATTGAAAAGG+AGG - chr2_4:57787114-57787133 None:intergenic 25.0%
! TGTAGTGTTAAGAAAGAAAA+GGG - chr2_4:57787145-57787164 None:intergenic 25.0%
!!! GTTCAAATATTTTCTAGTGA+AGG + chr2_4:57787193-57787212 Msa0337700:five_prime_UTR 25.0%
!!! CTTGTTCTTGTTTTTTTTGA+AGG + chr2_4:57787475-57787494 Msa0337700:intron 25.0%
! TAAGTAGCAAAGACATTTAA+CGG + chr2_4:57787652-57787671 Msa0337700:intron 25.0%
! TTTAGAGATATTCTCATAAC+TGG - chr2_4:57787963-57787982 None:intergenic 25.0%
! TCATACAAATTTGTAGGAAT+TGG + chr2_4:57788322-57788341 Msa0337700:intron 25.0%
! ATGCCAACTTAAATACTATT+TGG - chr2_4:57788409-57788428 None:intergenic 25.0%
! ATAATGTAAAATTTATGGGC+AGG + chr2_4:57788527-57788546 Msa0337700:intron 25.0%
! TAATGTAAAATTTATGGGCA+GGG + chr2_4:57788528-57788547 Msa0337700:intron 25.0%
! TTGGAATACATTTGTTCAAA+AGG - chr2_4:57788924-57788943 None:intergenic 25.0%
! ATATCCAGTTACATATAACT+AGG - chr2_4:57789003-57789022 None:intergenic 25.0%
! CTTATCACAAAATTTATCCA+TGG - chr2_4:57789026-57789045 None:intergenic 25.0%
! TAGCTTTCTGTTTCTTTAAG+GGG - chr2_4:57787012-57787031 None:intergenic 30.0%
AAAAAGAGTCACACTAAAGT+TGG + chr2_4:57787052-57787071 Msa0337700:five_prime_UTR 30.0%
ATTTAATAAGGCAAGTCCTA+TGG - chr2_4:57787080-57787099 None:intergenic 30.0%
GTGTAGTGTTAAGAAAGAAA+AGG - chr2_4:57787146-57787165 None:intergenic 30.0%
CAGTGATGAAAACAACAAAA+CGG + chr2_4:57787234-57787253 Msa0337700:five_prime_UTR 30.0%
!! CTTTGCTTTGAAAGAAAAAC+AGG + chr2_4:57787266-57787285 Msa0337700:five_prime_UTR 30.0%
! TTCATCAAATGTGTTACTGT+TGG + chr2_4:57787320-57787339 Msa0337700:CDS 30.0%
CTGAAGTTATCAAAAACTGT+AGG - chr2_4:57787509-57787528 None:intergenic 30.0%
CACAGTTAATCTTGGATTAT+GGG + chr2_4:57787553-57787572 Msa0337700:CDS 30.0%
! TGCTGGTAAGAATTTTCTTT+AGG + chr2_4:57787580-57787599 Msa0337700:intron 30.0%
! TGGTAAGAATTTTCTTTAGG+TGG + chr2_4:57787583-57787602 Msa0337700:intron 30.0%
CACAAAAACAACATTCTATC+TGG - chr2_4:57787746-57787765 None:intergenic 30.0%
ACTATTAATTACACACAGAG+AGG - chr2_4:57787813-57787832 None:intergenic 30.0%
TCATAAAAATTCAGGACAAG+AGG + chr2_4:57787862-57787881 Msa0337700:intron 30.0%
TTACGATAAAAGTTTAGCCT+TGG + chr2_4:57788183-57788202 Msa0337700:intron 30.0%
!! ATTATTGACTTGCAGATTTG+AGG + chr2_4:57788237-57788256 Msa0337700:intron 30.0%
!! TTATTGACTTGCAGATTTGA+GGG + chr2_4:57788238-57788257 Msa0337700:intron 30.0%
CAAATTTGTATGACTTACCT+GGG - chr2_4:57788315-57788334 None:intergenic 30.0%
ACAAATTTGTATGACTTACC+TGG - chr2_4:57788316-57788335 None:intergenic 30.0%
GGTAAGTCATACAAATTTGT+AGG + chr2_4:57788316-57788335 Msa0337700:intron 30.0%
TTAGTACAAAGCTAATAGTG+TGG - chr2_4:57788723-57788742 None:intergenic 30.0%
TGCAATATTTCAGAATGTGA+AGG + chr2_4:57788757-57788776 Msa0337700:intron 30.0%
!!! CTTTTTTTCTTTTGCTTAGG+AGG - chr2_4:57788818-57788837 None:intergenic 30.0%
! CAAACATGAATACCGATTAA+AGG - chr2_4:57788865-57788884 None:intergenic 30.0%
CTTTAATCGGTATTCATGTT+TGG + chr2_4:57788863-57788882 Msa0337700:exon 30.0%
TGTTCCTAGTTATATGTAAC+TGG + chr2_4:57788996-57789015 Msa0337700:three_prime_UTR 30.0%
TATATGTAACTGGATATCCA+TGG + chr2_4:57789006-57789025 Msa0337700:three_prime_UTR 30.0%
! TAGCTTTCTGTTTCTTTAAG+GGG - chr2_4:57787012-57787031 None:intergenic 30.0%
AAAAAGAGTCACACTAAAGT+TGG + chr2_4:57787052-57787071 Msa0337700:five_prime_UTR 30.0%
ATTTAATAAGGCAAGTCCTA+TGG - chr2_4:57787080-57787099 None:intergenic 30.0%
GTGTAGTGTTAAGAAAGAAA+AGG - chr2_4:57787146-57787165 None:intergenic 30.0%
CAGTGATGAAAACAACAAAA+CGG + chr2_4:57787234-57787253 Msa0337700:five_prime_UTR 30.0%
!! CTTTGCTTTGAAAGAAAAAC+AGG + chr2_4:57787266-57787285 Msa0337700:five_prime_UTR 30.0%
! TTCATCAAATGTGTTACTGT+TGG + chr2_4:57787320-57787339 Msa0337700:CDS 30.0%
CTGAAGTTATCAAAAACTGT+AGG - chr2_4:57787509-57787528 None:intergenic 30.0%
CACAGTTAATCTTGGATTAT+GGG + chr2_4:57787553-57787572 Msa0337700:CDS 30.0%
! TGCTGGTAAGAATTTTCTTT+AGG + chr2_4:57787580-57787599 Msa0337700:intron 30.0%
! TGGTAAGAATTTTCTTTAGG+TGG + chr2_4:57787583-57787602 Msa0337700:intron 30.0%
CACAAAAACAACATTCTATC+TGG - chr2_4:57787746-57787765 None:intergenic 30.0%
ACTATTAATTACACACAGAG+AGG - chr2_4:57787813-57787832 None:intergenic 30.0%
TCATAAAAATTCAGGACAAG+AGG + chr2_4:57787862-57787881 Msa0337700:intron 30.0%
TTACGATAAAAGTTTAGCCT+TGG + chr2_4:57788183-57788202 Msa0337700:intron 30.0%
!! ATTATTGACTTGCAGATTTG+AGG + chr2_4:57788237-57788256 Msa0337700:intron 30.0%
!! TTATTGACTTGCAGATTTGA+GGG + chr2_4:57788238-57788257 Msa0337700:intron 30.0%
CAAATTTGTATGACTTACCT+GGG - chr2_4:57788315-57788334 None:intergenic 30.0%
ACAAATTTGTATGACTTACC+TGG - chr2_4:57788316-57788335 None:intergenic 30.0%
GGTAAGTCATACAAATTTGT+AGG + chr2_4:57788316-57788335 Msa0337700:intron 30.0%
TTAGTACAAAGCTAATAGTG+TGG - chr2_4:57788723-57788742 None:intergenic 30.0%
TGCAATATTTCAGAATGTGA+AGG + chr2_4:57788757-57788776 Msa0337700:intron 30.0%
!!! CTTTTTTTCTTTTGCTTAGG+AGG - chr2_4:57788818-57788837 None:intergenic 30.0%
! CAAACATGAATACCGATTAA+AGG - chr2_4:57788865-57788884 None:intergenic 30.0%
CTTTAATCGGTATTCATGTT+TGG + chr2_4:57788863-57788882 Msa0337700:exon 30.0%
TGTTCCTAGTTATATGTAAC+TGG + chr2_4:57788996-57789015 Msa0337700:three_prime_UTR 30.0%
TATATGTAACTGGATATCCA+TGG + chr2_4:57789006-57789025 Msa0337700:three_prime_UTR 30.0%
! TCAGCAAAAAAGGACTTGTT+TGG - chr2_4:57786971-57786990 None:intergenic 35.0%
! TTTCTGTTTCTTTAAGGGGA+AGG - chr2_4:57787008-57787027 None:intergenic 35.0%
! GGGAAGTGAAGCATTTAATA+AGG - chr2_4:57787092-57787111 None:intergenic 35.0%
!! TGCTTTGAAAGAAAAACAGG+AGG + chr2_4:57787269-57787288 Msa0337700:five_prime_UTR 35.0%
! AAATGTGTTACTGTTGGAGA+TGG + chr2_4:57787326-57787345 Msa0337700:CDS 35.0%
! TGTGTTGTTATCATACCGTA+GGG - chr2_4:57787400-57787419 None:intergenic 35.0%
! ATGTGTTGTTATCATACCGT+AGG - chr2_4:57787401-57787420 None:intergenic 35.0%
TAACTTCAGTGCAAATGTTG+TGG + chr2_4:57787520-57787539 Msa0337700:CDS 35.0%
GCACAGTTAATCTTGGATTA+TGG + chr2_4:57787552-57787571 Msa0337700:CDS 35.0%
AAGAGGATTATAACAGGCTT+AGG + chr2_4:57787879-57787898 Msa0337700:CDS 35.0%
! CACTAGCTAATTTTATGCAG+TGG + chr2_4:57788055-57788074 Msa0337700:intron 35.0%
CAGTATTTGATTGATCATCC+AGG + chr2_4:57788269-57788288 Msa0337700:CDS 35.0%
! CACGCTATCAAGGTTTTTAT+AGG + chr2_4:57788487-57788506 Msa0337700:intron 35.0%
! TGCTGTGACATTTGATTTCA+TGG + chr2_4:57788893-57788912 Msa0337700:three_prime_UTR 35.0%
AACTGAAAGAAAGTAGAGCT+TGG - chr2_4:57788943-57788962 None:intergenic 35.0%
TCAATACAAGCAGGAGAATT+TGG + chr2_4:57789092-57789111 Msa0337700:three_prime_UTR 35.0%
! TCAGCAAAAAAGGACTTGTT+TGG - chr2_4:57786971-57786990 None:intergenic 35.0%
! TTTCTGTTTCTTTAAGGGGA+AGG - chr2_4:57787008-57787027 None:intergenic 35.0%
! GGGAAGTGAAGCATTTAATA+AGG - chr2_4:57787092-57787111 None:intergenic 35.0%
!! TGCTTTGAAAGAAAAACAGG+AGG + chr2_4:57787269-57787288 Msa0337700:five_prime_UTR 35.0%
! AAATGTGTTACTGTTGGAGA+TGG + chr2_4:57787326-57787345 Msa0337700:CDS 35.0%
! TGTGTTGTTATCATACCGTA+GGG - chr2_4:57787400-57787419 None:intergenic 35.0%
! ATGTGTTGTTATCATACCGT+AGG - chr2_4:57787401-57787420 None:intergenic 35.0%
TAACTTCAGTGCAAATGTTG+TGG + chr2_4:57787520-57787539 Msa0337700:CDS 35.0%
GCACAGTTAATCTTGGATTA+TGG + chr2_4:57787552-57787571 Msa0337700:CDS 35.0%
AAGAGGATTATAACAGGCTT+AGG + chr2_4:57787879-57787898 Msa0337700:CDS 35.0%
! CACTAGCTAATTTTATGCAG+TGG + chr2_4:57788055-57788074 Msa0337700:intron 35.0%
CAGTATTTGATTGATCATCC+AGG + chr2_4:57788269-57788288 Msa0337700:CDS 35.0%
! CACGCTATCAAGGTTTTTAT+AGG + chr2_4:57788487-57788506 Msa0337700:intron 35.0%
! TGCTGTGACATTTGATTTCA+TGG + chr2_4:57788893-57788912 Msa0337700:three_prime_UTR 35.0%
AACTGAAAGAAAGTAGAGCT+TGG - chr2_4:57788943-57788962 None:intergenic 35.0%
TCAATACAAGCAGGAGAATT+TGG + chr2_4:57789092-57789111 Msa0337700:three_prime_UTR 35.0%
CACAAGCAATACATTCCCTA+CGG + chr2_4:57787382-57787401 Msa0337700:CDS 40.0%
AGTGCAAATGTTGTGGTTGA+TGG + chr2_4:57787527-57787546 Msa0337700:CDS 40.0%
CAGGACAAGAGGATTATAAC+AGG + chr2_4:57787873-57787892 Msa0337700:intron 40.0%
ACAAGTACAATTGGCACAGT+TGG - chr2_4:57788105-57788124 None:intergenic 40.0%
AACTGTGCCAATTGTACTTG+TGG + chr2_4:57788104-57788123 Msa0337700:CDS 40.0%
ACTGTGCCAATTGTACTTGT+GGG + chr2_4:57788105-57788124 Msa0337700:CDS 40.0%
TTGGTTCCCACAAGTACAAT+TGG - chr2_4:57788114-57788133 None:intergenic 40.0%
! TGTTTAGCTCCTACCAAGTT+TGG - chr2_4:57788133-57788152 None:intergenic 40.0%
TTGCAGATTTGAGGGAAGAT+AGG + chr2_4:57788246-57788265 Msa0337700:intron 40.0%
AATTGAGAGATCTCAGTCGT+TGG - chr2_4:57788452-57788471 None:intergenic 40.0%
ATTGCGTTAACACGCTATCA+AGG + chr2_4:57788477-57788496 Msa0337700:intron 40.0%
TGTGTTTGATGCTGCAATCA+AGG + chr2_4:57788781-57788800 Msa0337700:CDS 40.0%
TATCGATCGTCAATACAAGC+AGG + chr2_4:57789083-57789102 Msa0337700:three_prime_UTR 40.0%
TACAAGCAGGAGAATTTGGT+TGG + chr2_4:57789096-57789115 Msa0337700:three_prime_UTR 40.0%
CACAAGCAATACATTCCCTA+CGG + chr2_4:57787382-57787401 Msa0337700:CDS 40.0%
AGTGCAAATGTTGTGGTTGA+TGG + chr2_4:57787527-57787546 Msa0337700:CDS 40.0%
CAGGACAAGAGGATTATAAC+AGG + chr2_4:57787873-57787892 Msa0337700:intron 40.0%
ACAAGTACAATTGGCACAGT+TGG - chr2_4:57788105-57788124 None:intergenic 40.0%
AACTGTGCCAATTGTACTTG+TGG + chr2_4:57788104-57788123 Msa0337700:CDS 40.0%
ACTGTGCCAATTGTACTTGT+GGG + chr2_4:57788105-57788124 Msa0337700:CDS 40.0%
TTGGTTCCCACAAGTACAAT+TGG - chr2_4:57788114-57788133 None:intergenic 40.0%
! TGTTTAGCTCCTACCAAGTT+TGG - chr2_4:57788133-57788152 None:intergenic 40.0%
TTGCAGATTTGAGGGAAGAT+AGG + chr2_4:57788246-57788265 Msa0337700:intron 40.0%
AATTGAGAGATCTCAGTCGT+TGG - chr2_4:57788452-57788471 None:intergenic 40.0%
ATTGCGTTAACACGCTATCA+AGG + chr2_4:57788477-57788496 Msa0337700:intron 40.0%
TGTGTTTGATGCTGCAATCA+AGG + chr2_4:57788781-57788800 Msa0337700:CDS 40.0%
TATCGATCGTCAATACAAGC+AGG + chr2_4:57789083-57789102 Msa0337700:three_prime_UTR 40.0%
!! CACACTAAAGTTGGTGCCAT+AGG + chr2_4:57787061-57787080 Msa0337700:five_prime_UTR 45.0%
GATGGCAGCACAGTTAATCT+TGG + chr2_4:57787545-57787564 Msa0337700:CDS 45.0%
CTTAGGCCTTTGAGCTATAG+AGG + chr2_4:57787896-57787915 Msa0337700:CDS 45.0%
TCTGCTCCTCTATAGCTCAA+AGG - chr2_4:57787905-57787924 None:intergenic 45.0%
AGGAGCAGATGTGTTCTTGT+TGG + chr2_4:57787916-57787935 Msa0337700:CDS 45.0%
GGAGCATAATGTCTCAGTTC+AGG - chr2_4:57788084-57788103 None:intergenic 45.0%
GTACTTGTGGGAACCAAACT+TGG + chr2_4:57788117-57788136 Msa0337700:CDS 45.0%
TTGTGGGAACCAAACTTGGT+AGG + chr2_4:57788121-57788140 Msa0337700:intron 45.0%
GTAGTTATAGCTGTAGCTCC+TGG - chr2_4:57788290-57788309 None:intergenic 45.0%
TACAGCTATAACTACTGCCC+AGG + chr2_4:57788295-57788314 Msa0337700:CDS 45.0%
CAGATTTCAGCCGCTAATGA+TGG + chr2_4:57788367-57788386 Msa0337700:intron 45.0%
AGTCGTCTAGCCATCATTAG+CGG - chr2_4:57788380-57788399 None:intergenic 45.0%
!! CACACTAAAGTTGGTGCCAT+AGG + chr2_4:57787061-57787080 Msa0337700:five_prime_UTR 45.0%
GATGGCAGCACAGTTAATCT+TGG + chr2_4:57787545-57787564 Msa0337700:CDS 45.0%
CTTAGGCCTTTGAGCTATAG+AGG + chr2_4:57787896-57787915 Msa0337700:CDS 45.0%
TCTGCTCCTCTATAGCTCAA+AGG - chr2_4:57787905-57787924 None:intergenic 45.0%
AGGAGCAGATGTGTTCTTGT+TGG + chr2_4:57787916-57787935 Msa0337700:CDS 45.0%
GGAGCATAATGTCTCAGTTC+AGG - chr2_4:57788084-57788103 None:intergenic 45.0%
GTACTTGTGGGAACCAAACT+TGG + chr2_4:57788117-57788136 Msa0337700:CDS 45.0%
TTGTGGGAACCAAACTTGGT+AGG + chr2_4:57788121-57788140 Msa0337700:intron 45.0%
GTAGTTATAGCTGTAGCTCC+TGG - chr2_4:57788290-57788309 None:intergenic 45.0%
TACAGCTATAACTACTGCCC+AGG + chr2_4:57788295-57788314 Msa0337700:CDS 45.0%
CAGATTTCAGCCGCTAATGA+TGG + chr2_4:57788367-57788386 Msa0337700:intron 45.0%
AGTCGTCTAGCCATCATTAG+CGG - chr2_4:57788380-57788399 None:intergenic 45.0%
!! ACTGTTGGAGATGGTGCTGT+TGG + chr2_4:57787335-57787354 Msa0337700:CDS 50.0%
CTTGGATTATGGGACACTGC+TGG + chr2_4:57787563-57787582 Msa0337700:CDS 50.0%
GGCTCTGCTGAGTAGTGAAA+AGG - chr2_4:57787942-57787961 None:intergenic 50.0%
GAAGAGCTGAAGAGGGCAAT+TGG + chr2_4:57788552-57788571 Msa0337700:CDS 50.0%
ATGCAGCTCAAAGACTCAGC+AGG + chr2_4:57788593-57788612 Msa0337700:CDS 50.0%
!! ACTGTTGGAGATGGTGCTGT+TGG + chr2_4:57787335-57787354 Msa0337700:CDS 50.0%
CTTGGATTATGGGACACTGC+TGG + chr2_4:57787563-57787582 Msa0337700:CDS 50.0%
GGCTCTGCTGAGTAGTGAAA+AGG - chr2_4:57787942-57787961 None:intergenic 50.0%
GAAGAGCTGAAGAGGGCAAT+TGG + chr2_4:57788552-57788571 Msa0337700:CDS 50.0%
ATGCAGCTCAAAGACTCAGC+AGG + chr2_4:57788593-57788612 Msa0337700:CDS 50.0%
GCAGGGTGAAGAGCTGAAGA+GGG + chr2_4:57788545-57788564 Msa0337700:intron 55.0%
GCAGGGTGAAGAGCTGAAGA+GGG + chr2_4:57788545-57788564 Msa0337700:intron 55.0%
GGCAGGGTGAAGAGCTGAAG+AGG + chr2_4:57788544-57788563 Msa0337700:intron 60.0%
GGCAGGGTGAAGAGCTGAAG+AGG + chr2_4:57788544-57788563 Msa0337700:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 57786957 57789118 57786957 ID=Msa0337700;Name=Msa0337700
chr2_4 mRNA 57786957 57789118 57786957 ID=Msa0337700-mRNA-1;Parent=Msa0337700;Name=Msa0337700-mRNA-1;_AED=0.12;_eAED=0.12;_QI=348|1|1|1|1|1|7|250|196
chr2_4 exon 57786957 57787403 57786957 ID=Msa0337700-mRNA-1:exon:17609;Parent=Msa0337700-mRNA-1
chr2_4 exon 57787497 57787584 57787497 ID=Msa0337700-mRNA-1:exon:17610;Parent=Msa0337700-mRNA-1
chr2_4 exon 57787876 57787985 57787876 ID=Msa0337700-mRNA-1:exon:17611;Parent=Msa0337700-mRNA-1
chr2_4 exon 57788075 57788138 57788075 ID=Msa0337700-mRNA-1:exon:17612;Parent=Msa0337700-mRNA-1
chr2_4 exon 57788252 57788316 57788252 ID=Msa0337700-mRNA-1:exon:17613;Parent=Msa0337700-mRNA-1
chr2_4 exon 57788549 57788614 57788549 ID=Msa0337700-mRNA-1:exon:17614;Parent=Msa0337700-mRNA-1
chr2_4 exon 57788770 57789118 57788770 ID=Msa0337700-mRNA-1:exon:17615;Parent=Msa0337700-mRNA-1
chr2_4 five_prime_UTR 57786957 57787304 57786957 ID=Msa0337700-mRNA-1:five_prime_utr;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57787305 57787403 57787305 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57787497 57787584 57787497 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57787876 57787985 57787876 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57788075 57788138 57788075 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57788252 57788316 57788252 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57788549 57788614 57788549 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 CDS 57788770 57788868 57788770 ID=Msa0337700-mRNA-1:cds;Parent=Msa0337700-mRNA-1
chr2_4 three_prime_UTR 57788869 57789118 57788869 ID=Msa0337700-mRNA-1:three_prime_utr;Parent=Msa0337700-mRNA-1
Gene Sequence

>Msa0337700

ATGAGTACAGCAAGATTCATCAAATGTGTTACTGTTGGAGATGGTGCTGTTGGAAAGACTTGTATGCTTATCTCTTACACAAGCAATACATTCCCTACGGATTATGTGCCTACAGTTTTTGATAACTTCAGTGCAAATGTTGTGGTTGATGGCAGCACAGTTAATCTTGGATTATGGGACACTGCTGGACAAGAGGATTATAACAGGCTTAGGCCTTTGAGCTATAGAGGAGCAGATGTGTTCTTGTTGGCCTTTTCACTACTCAGCAGAGCCAGTTATGAGAATATCTCTAAAAAGTGGATTCCTGAACTGAGACATTATGCTCCAACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCAGGAGCTACAGCTATAACTACTGCCCAGGGTGAAGAGCTGAAGAGGGCAATTGGTGCAGCAGTGTACTTAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCTCCTAAGCAAAAGAAAAAAAGAAAGAAGAACAGATCATGTATTTTCCTTTAA

Protein sequence

>Msa0337700

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATAITTAQGEELKRAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQPPKQKKKRKKNRSCIFL*