AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427120 MtrunA17_Chr3g0129361 87.705 244 5 2 1 243 1 220 4.45e-159 439
Msa0427120 MtrunA17_Chr8g0383351 62.857 245 70 13 6 243 4 234 4.18e-88 260
Msa0427120 MtrunA17_Chr8g0335811 79.121 91 19 0 143 233 130 220 4.78e-48 158
Msa0427120 MtrunA17_Chr5g0418781 66.667 81 27 0 143 223 100 180 1.06e-33 122
Msa0427120 MtrunA17_Chr1g0194481 60.638 94 35 2 139 232 131 222 5.50e-32 119
Msa0427120 MtrunA17_Chr3g0106491 64.103 78 28 0 146 223 344 421 1.08e-30 118
Msa0427120 MtrunA17_Chr3g0106491 47.887 71 32 2 157 223 184 253 8.19e-15 73.2
Msa0427120 MtrunA17_Chr4g0051881 70.423 71 21 0 153 223 164 234 2.49e-30 115
Msa0427120 MtrunA17_Chr2g0294231 68.493 73 23 0 151 223 187 259 2.75e-30 115
Msa0427120 MtrunA17_Chr7g0248721 33.488 215 117 5 32 234 6 206 4.08e-30 111
Msa0427120 MtrunA17_Chr5g0432161 41.420 169 79 4 69 223 315 477 4.40e-30 117
Msa0427120 MtrunA17_Chr5g0432161 56.140 57 24 1 167 223 244 299 1.37e-14 72.8
Msa0427120 MtrunA17_Chr5g0445311 60.526 76 30 0 148 223 345 420 7.86e-30 116
Msa0427120 MtrunA17_Chr5g0445311 43.182 88 46 2 152 236 185 271 7.64e-14 70.5
Msa0427120 MtrunA17_Chr7g0270191 53.846 104 42 3 124 223 100 201 3.13e-29 111
Msa0427120 MtrunA17_Chr3g0079691 49.558 113 44 1 124 223 439 551 3.49e-29 115
Msa0427120 MtrunA17_Chr3g0079691 56.140 57 24 1 167 223 280 335 8.22e-15 73.6
Msa0427120 MtrunA17_Chr3g0101131 60.526 76 30 0 148 223 396 471 3.60e-29 115
Msa0427120 MtrunA17_Chr3g0101131 56.140 57 24 1 167 223 243 298 1.19e-14 72.8
Msa0427120 MtrunA17_Chr7g0218081 61.039 77 30 0 147 223 390 466 3.78e-29 114
Msa0427120 MtrunA17_Chr7g0218081 59.649 57 22 1 167 223 228 283 4.01e-16 77.0
Msa0427120 MtrunA17_Chr5g0418191 61.842 76 29 0 148 223 301 376 3.91e-29 113
Msa0427120 MtrunA17_Chr5g0418191 49.367 79 34 3 167 241 151 227 3.88e-15 73.9
Msa0427120 MtrunA17_Chr4g0004911 44.928 138 59 3 97 223 261 392 8.55e-29 113
Msa0427120 MtrunA17_Chr4g0004911 52.632 57 27 0 167 223 184 240 4.01e-15 74.3
Msa0427120 MtrunA17_Chr5g0443131 66.197 71 24 0 153 223 143 213 1.22e-28 110
Msa0427120 MtrunA17_Chr4g0068541 67.123 73 24 0 151 223 192 264 1.67e-28 111
Msa0427120 MtrunA17_Chr4g0042831 59.211 76 31 0 148 223 259 334 3.81e-28 110
Msa0427120 MtrunA17_Chr4g0042831 54.386 57 26 0 167 223 145 201 1.32e-14 72.4
Msa0427120 MtrunA17_Chr7g0224801 63.768 69 25 0 155 223 81 149 6.08e-28 104
Msa0427120 MtrunA17_Chr7g0249301 56.627 83 36 0 141 223 266 348 3.98e-27 107
Msa0427120 MtrunA17_Chr7g0249301 52.381 63 29 1 165 227 60 121 3.01e-15 74.3
Msa0427120 MtrunA17_Chr7g0249311 55.422 83 37 0 141 223 366 448 4.99e-27 108
Msa0427120 MtrunA17_Chr7g0249311 55.172 58 25 1 167 224 179 235 1.13e-15 75.9
Msa0427120 MtrunA17_Chr7g0243891 59.211 76 31 0 148 223 355 430 1.07e-26 107
Msa0427120 MtrunA17_Chr7g0243891 50.000 76 35 2 167 240 216 290 4.90e-15 73.9
Msa0427120 MtrunA17_Chr1g0150801 58.442 77 31 1 147 223 83 158 1.30e-26 101
Msa0427120 MtrunA17_Chr8g0386241 45.918 98 51 2 145 242 81 176 1.25e-25 99.0
Msa0427120 MtrunA17_Chr1g0188941 56.579 76 33 0 148 223 32 107 3.15e-25 95.9
Msa0427120 MtrunA17_Chr3g0129321 57.895 76 31 1 153 227 104 179 3.94e-25 98.6
Msa0427120 MtrunA17_Chr7g0263531 56.944 72 31 0 152 223 346 417 9.26e-24 99.0
Msa0427120 MtrunA17_Chr7g0263531 57.143 56 23 1 168 223 190 244 1.46e-14 72.4
Msa0427120 MtrunA17_Chr1g0189391 47.727 88 45 1 154 240 84 171 2.25e-22 93.6
Msa0427120 MtrunA17_Chr8g0383251 42.424 99 51 1 131 223 66 164 2.56e-22 90.5
Msa0427120 MtrunA17_Chr7g0238921 45.361 97 52 1 128 223 84 180 2.26e-21 90.9
Msa0427120 MtrunA17_Chr5g0447701 51.351 74 36 0 152 225 237 310 5.38e-21 90.5
Msa0427120 MtrunA17_Chr1g0147881 36.735 147 74 4 86 231 199 327 1.41e-20 89.0
Msa0427120 MtrunA17_Chr2g0322391 46.067 89 46 2 150 236 332 420 1.60e-19 87.0
Msa0427120 MtrunA17_Chr6g0485431 48.611 72 36 1 153 223 140 211 1.68e-19 86.3
Msa0427120 MtrunA17_Chr4g0074001 49.315 73 37 0 151 223 343 415 1.79e-19 87.0
Msa0427120 MtrunA17_Chr4g0060271 47.368 76 39 1 150 224 238 313 4.00e-19 85.9
Msa0427120 MtrunA17_Chr4g0075201 48.000 75 38 1 150 223 250 324 2.27e-18 83.6
Msa0427120 MtrunA17_Chr4g0053281 45.455 88 44 2 140 226 242 326 2.73e-18 82.4
Msa0427120 MtrunA17_Chr3g0139021 46.988 83 40 3 142 223 292 371 2.74e-18 83.2
Msa0427120 MtrunA17_Chr5g0401821 45.455 88 44 2 140 226 175 259 3.18e-18 81.3
Msa0427120 MtrunA17_Chr3g0099641 44.737 76 41 1 150 224 234 309 3.51e-18 83.2
Msa0427120 MtrunA17_Chr2g0288871 46.667 75 39 1 150 223 288 362 3.54e-18 83.2
Msa0427120 MtrunA17_Chr7g0270831 47.297 74 38 1 151 223 200 273 6.19e-18 82.0
Msa0427120 MtrunA17_Chr2g0333851 46.154 78 39 2 149 223 149 226 1.02e-17 80.5
Msa0427120 MtrunA17_Chr4g0071521 37.500 112 55 4 114 224 206 303 1.32e-16 77.4
Msa0427120 MtrunA17_Chr7g0216891 47.887 71 36 1 154 223 206 276 1.57e-16 78.6
Msa0427120 MtrunA17_Chr7g0228941 52.459 61 28 1 164 223 49 109 1.88e-16 73.2
Msa0427120 MtrunA17_Chr4g0025061 45.882 85 44 2 154 236 347 431 2.18e-16 78.2
Msa0427120 MtrunA17_Chr2g0302391 34.014 147 87 4 99 242 150 289 3.91e-16 77.0
Msa0427120 MtrunA17_Chr1g0150281 52.632 57 26 1 168 223 141 197 4.05e-16 75.9
Msa0427120 MtrunA17_Chr4g0051181 44.595 74 40 1 151 223 227 300 1.00e-15 75.9
Msa0427120 MtrunA17_Chr3g0136961 50.000 60 29 1 166 224 137 196 1.01e-15 74.7
Msa0427120 MtrunA17_Chr1g0184691 40.476 84 46 2 142 224 271 351 1.24e-15 75.1
Msa0427120 MtrunA17_Chr1g0150271 44.615 65 35 1 165 228 99 163 1.80e-15 73.6
Msa0427120 MtrunA17_Chr8g0348311 37.500 120 63 6 124 239 120 231 4.47e-15 73.6
Msa0427120 MtrunA17_Chr8g0387981 53.125 64 27 1 167 227 132 195 9.00e-15 72.8
Msa0427120 MtrunA17_Chr4g0001361 43.478 69 38 1 165 232 160 228 9.72e-15 72.4
Msa0427120 MtrunA17_Chr3g0126391 53.333 60 25 1 166 222 132 191 1.13e-14 72.4
Msa0427120 MtrunA17_Chr5g0447711 43.243 74 42 0 152 225 215 288 3.93e-14 70.5
Msa0427120 MtrunA17_Chr7g0275531 40.196 102 50 3 125 222 82 176 9.94e-14 69.3
Msa0427120 MtrunA17_Chr5g0432071 52.632 57 26 1 167 223 104 159 1.20e-13 67.8
Msa0427120 MtrunA17_Chr4g0025051 42.353 85 47 2 154 236 322 406 1.74e-13 69.3
Msa0427120 MtrunA17_Chr7g0244981 50.847 59 26 1 167 222 122 180 2.13e-13 68.2
Msa0427120 MtrunA17_Chr2g0315381 50.820 61 27 1 165 222 142 202 4.04e-13 67.8
Msa0427120 MtrunA17_Chr2g0315361 39.362 94 51 3 132 222 116 206 5.20e-13 67.4
Msa0427120 MtrunA17_Chr8g0379461 48.276 58 29 1 168 224 77 134 8.47e-13 65.9
Msa0427120 MtrunA17_Chr2g0293481 32.673 101 60 2 131 223 224 324 1.39e-12 66.6
Msa0427120 MtrunA17_Chr2g0289181 40.845 71 39 2 155 224 4 72 1.54e-12 65.1
Msa0427120 MtrunA17_Chr8g0387501 46.667 60 31 1 165 223 127 186 1.88e-12 65.5
Msa0427120 MtrunA17_Chr2g0284321 46.552 58 30 1 168 224 36 93 1.91e-12 64.7
Msa0427120 MtrunA17_Chr8g0334541 38.372 86 49 2 145 227 82 166 3.98e-12 64.3
Msa0427120 MtrunA17_Chr7g0244971 40.000 85 47 2 141 222 98 181 5.05e-12 64.3
Msa0427120 MtrunA17_Chr7g0248691 46.053 76 37 3 168 239 155 230 5.17e-12 64.7
Msa0427120 MtrunA17_Chr7g0270051 49.123 57 28 1 168 223 54 110 6.97e-12 63.5
Msa0427120 MtrunA17_Chr8g0347251 41.096 73 40 1 166 235 135 207 7.55e-12 64.3
Msa0427120 MtrunA17_Chr8g0350621 44.068 59 30 1 167 222 111 169 1.56e-11 62.8
Msa0427120 MtrunA17_Chr2g0319961 46.552 58 30 1 168 224 81 138 4.01e-11 61.6
Msa0427120 MtrunA17_Chr1g0202461 36.709 79 48 2 147 224 242 319 7.82e-11 61.2
Msa0427120 MtrunA17_Chr3g0128671 41.250 80 37 3 147 222 112 185 8.38e-11 60.8
Msa0427120 MtrunA17_Chr1g0188961 49.091 55 28 0 187 241 3 57 8.91e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427120 AT4G39410.1 70.896 134 23 3 126 243 171 304 5.97e-62 196
Msa0427120 AT2G44745.1 82.558 86 15 0 143 228 121 206 5.91e-48 158
Msa0427120 AT1G69310.4 63.218 87 31 1 137 223 118 203 1.28e-34 125
Msa0427120 AT1G69310.2 63.218 87 31 1 137 223 118 203 1.28e-34 125
Msa0427120 AT1G69310.1 63.218 87 31 1 137 223 118 203 1.28e-34 125
Msa0427120 AT5G41570.1 57.843 102 39 2 131 232 65 162 8.55e-33 117
Msa0427120 AT1G64000.1 62.222 90 33 1 143 232 90 178 1.24e-32 118
Msa0427120 AT2G46130.1 59.770 87 34 1 148 234 11 96 5.13e-32 113
Msa0427120 AT5G49520.1 68.493 73 23 0 151 223 205 277 1.07e-30 117
Msa0427120 AT5G07100.2 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427120 AT5G07100.2 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427120 AT5G07100.4 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427120 AT5G07100.4 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427120 AT5G07100.5 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427120 AT5G07100.5 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427120 AT5G07100.3 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427120 AT5G07100.3 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427120 AT4G18170.1 59.375 96 37 2 133 227 139 233 1.54e-30 115
Msa0427120 AT5G07100.1 51.923 104 44 1 120 223 193 290 2.21e-30 115
Msa0427120 AT5G07100.1 47.826 69 36 0 155 223 105 173 1.05e-14 72.4
Msa0427120 AT5G26170.1 66.216 74 25 0 154 227 100 173 2.91e-30 111
Msa0427120 AT4G26640.5 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427120 AT4G26640.5 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427120 AT4G26640.6 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427120 AT4G26640.6 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427120 AT4G26640.4 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427120 AT4G26640.4 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427120 AT4G26640.3 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427120 AT4G26640.3 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427120 AT1G13960.2 63.158 76 28 0 148 223 237 312 2.74e-29 113
Msa0427120 AT1G13960.2 55.932 59 25 1 167 225 76 133 9.40e-15 73.2
Msa0427120 AT1G13960.1 63.158 76 28 0 148 223 390 465 3.04e-29 115
Msa0427120 AT1G13960.1 55.932 59 25 1 167 225 229 286 3.04e-15 75.1
Msa0427120 AT2G03340.1 63.158 76 28 0 148 223 396 471 3.30e-29 115
Msa0427120 AT2G03340.1 56.140 57 24 1 167 223 250 305 6.85e-14 70.9
Msa0427120 AT4G26640.7 53.846 91 35 1 140 223 307 397 3.49e-29 115
Msa0427120 AT4G26640.7 54.237 59 26 1 165 223 169 226 4.86e-14 71.6
Msa0427120 AT4G26640.1 53.846 91 35 1 140 223 275 365 4.17e-29 114
Msa0427120 AT4G26640.1 54.237 59 26 1 165 223 137 194 6.00e-14 71.2
Msa0427120 AT4G26640.2 53.846 91 35 1 140 223 347 437 5.15e-29 114
Msa0427120 AT4G26640.2 54.237 59 26 1 165 223 209 266 5.36e-14 71.2
Msa0427120 AT1G29860.1 65.753 73 25 0 151 223 120 192 5.25e-29 110
Msa0427120 AT1G69310.3 58.621 87 31 2 137 223 118 199 5.76e-29 110
Msa0427120 AT2G47260.1 61.176 85 32 1 139 223 147 230 6.46e-29 111
Msa0427120 AT3G01080.2 55.435 92 37 1 136 223 309 400 8.30e-29 113
Msa0427120 AT3G01080.2 56.140 57 24 1 167 223 205 260 3.23e-15 74.7
Msa0427120 AT5G56270.1 63.158 76 28 0 148 223 468 543 1.01e-28 114
Msa0427120 AT5G56270.1 50.769 65 31 1 159 223 265 328 1.97e-15 75.9
Msa0427120 AT5G13080.1 64.286 70 25 0 154 223 54 123 1.13e-28 106
Msa0427120 AT3G01080.1 55.435 92 37 1 136 223 271 362 1.36e-28 112
Msa0427120 AT3G01080.1 56.140 57 24 1 167 223 167 222 6.20e-15 73.9
Msa0427120 AT2G38470.1 63.158 76 28 0 148 223 343 418 1.69e-28 113
Msa0427120 AT2G38470.1 54.386 57 25 1 167 223 184 239 1.62e-13 70.1
Msa0427120 AT2G30250.1 58.824 85 35 0 148 232 309 393 5.01e-28 110
Msa0427120 AT2G30250.1 47.222 72 36 2 167 238 166 235 2.08e-12 66.2
Msa0427120 AT5G46350.1 64.789 71 25 0 153 223 169 239 3.18e-27 107
Msa0427120 AT4G26440.1 59.211 76 31 0 148 223 353 428 6.53e-27 108
Msa0427120 AT4G26440.1 30.698 215 97 7 21 224 61 234 1.93e-16 78.6
Msa0427120 AT3G01970.1 53.409 88 38 1 154 238 52 139 8.09e-27 101
Msa0427120 AT2G46130.2 55.172 87 34 2 148 234 11 92 1.59e-26 99.4
Msa0427120 AT3G62340.1 59.036 83 32 1 141 223 94 174 6.93e-25 99.8
Msa0427120 AT5G64810.1 58.571 70 29 0 154 223 97 166 7.42e-25 97.8
Msa0427120 AT2G37260.2 62.903 62 23 0 162 223 262 323 4.99e-23 96.3
Msa0427120 AT2G37260.2 49.333 75 36 2 168 241 84 157 1.06e-13 70.1
Msa0427120 AT2G37260.3 62.903 62 23 0 162 223 264 325 5.22e-23 96.3
Msa0427120 AT2G37260.3 49.333 75 36 2 168 241 86 159 1.08e-13 70.1
Msa0427120 AT2G37260.1 65.000 60 21 0 164 223 346 405 9.39e-23 96.3
Msa0427120 AT2G37260.1 49.333 75 36 2 168 241 166 239 9.35e-14 70.5
Msa0427120 AT2G04880.2 42.202 109 50 2 123 223 236 339 1.06e-21 93.6
Msa0427120 AT2G04880.2 55.932 59 25 1 165 223 109 166 2.67e-14 72.0
Msa0427120 AT5G15130.2 40.800 125 51 4 105 224 137 243 1.38e-21 93.6
Msa0427120 AT2G04880.1 42.202 109 50 2 123 223 260 363 1.42e-21 93.2
Msa0427120 AT2G04880.1 55.932 59 25 1 165 223 109 166 2.97e-14 72.0
Msa0427120 AT5G15130.1 40.800 125 51 4 105 224 179 285 1.61e-21 93.2
Msa0427120 AT1G55600.1 50.000 80 40 0 144 223 284 363 4.25e-21 92.0
Msa0427120 AT2G21900.1 46.667 90 42 3 143 226 80 169 2.51e-20 85.9
Msa0427120 AT2G23320.1 51.136 88 39 3 140 226 216 300 4.63e-19 84.7
Msa0427120 AT4G31550.1 40.952 105 57 3 140 243 222 322 1.28e-18 83.6
Msa0427120 AT4G31550.2 40.952 105 57 3 140 243 221 321 1.37e-18 83.6
Msa0427120 AT4G30935.1 50.000 70 35 0 154 223 318 387 1.78e-18 84.3
Msa0427120 AT4G04450.2 49.333 75 37 1 150 223 181 255 2.57e-18 83.6
Msa0427120 AT4G04450.1 49.333 75 37 1 150 223 275 349 6.57e-18 82.8
Msa0427120 AT5G43290.1 50.704 71 34 1 154 223 100 170 1.14e-17 80.5
Msa0427120 AT1G62300.1 48.000 75 38 1 150 223 295 369 1.41e-17 82.0
Msa0427120 AT4G22070.4 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427120 AT4G22070.3 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427120 AT4G22070.2 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427120 AT4G22070.1 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427120 AT2G25000.2 51.667 60 28 1 166 224 102 161 2.31e-17 78.6
Msa0427120 AT2G25000.4 51.667 60 28 1 166 224 102 161 2.31e-17 78.6
Msa0427120 AT2G25000.3 50.820 61 29 1 165 224 123 183 3.50e-17 78.6
Msa0427120 AT4G01720.1 48.649 74 37 1 151 223 223 296 4.53e-17 80.1
Msa0427120 AT4G31800.2 51.667 60 28 1 165 223 109 168 4.58e-17 78.2
Msa0427120 AT2G25000.1 51.667 60 28 1 166 224 145 204 5.11e-17 78.6
Msa0427120 AT5G28650.1 43.023 86 45 2 140 224 238 320 6.13e-17 79.0
Msa0427120 AT2G30590.1 44.706 85 43 2 140 223 289 370 7.00e-17 79.3
Msa0427120 AT4G31800.1 51.667 60 28 1 165 223 174 233 7.71e-17 78.6
Msa0427120 AT2G24570.1 38.938 113 56 3 112 223 200 300 1.71e-16 77.8
Msa0427120 AT1G18860.1 44.000 75 41 1 150 223 222 296 2.30e-16 78.2
Msa0427120 AT3G04670.1 41.860 86 46 2 140 224 238 320 4.09e-16 76.6
Msa0427120 AT4G24240.1 41.860 86 46 2 140 224 257 339 9.08e-16 75.9
Msa0427120 AT3G01080.3 56.140 57 24 1 167 223 205 260 9.69e-16 75.5
Msa0427120 AT1G68150.1 38.776 98 56 2 130 223 195 292 1.38e-15 75.5
Msa0427120 AT1G80840.1 44.828 87 43 4 142 223 117 203 2.27e-15 74.3
Msa0427120 AT4G01250.1 42.308 78 42 2 147 223 110 185 1.52e-14 72.0
Msa0427120 AT1G69810.2 43.421 76 41 2 150 223 128 203 5.31e-14 70.9
Msa0427120 AT1G66550.1 38.776 98 55 2 130 222 69 166 6.81e-14 69.7
Msa0427120 AT1G69810.1 43.421 76 41 2 150 223 186 261 6.82e-14 70.9
Msa0427120 AT1G29280.1 38.202 89 44 2 136 223 53 131 1.15e-13 68.9
Msa0427120 AT1G66550.2 47.458 59 28 1 167 222 103 161 2.28e-13 68.2
Msa0427120 AT3G56400.1 33.654 104 65 2 135 234 87 190 2.88e-13 68.2
Msa0427120 AT1G66560.1 47.458 59 28 1 167 222 103 161 3.86e-13 67.4
Msa0427120 AT2G34830.1 38.202 89 52 3 138 223 184 272 8.37e-13 67.8
Msa0427120 AT2G34830.2 38.202 89 52 3 138 223 193 281 9.69e-13 67.4
Msa0427120 AT1G66600.1 40.506 79 43 2 166 241 102 179 1.06e-12 65.9
Msa0427120 AT1G30650.1 33.333 99 58 2 133 223 176 274 1.72e-12 66.6
Msa0427120 AT5G01900.1 45.312 64 32 2 161 221 104 167 2.79e-12 65.1
Msa0427120 AT2G40740.1 50.000 58 26 1 167 221 173 230 2.91e-12 65.5
Msa0427120 AT5G52830.1 49.123 57 28 1 168 223 166 222 3.01e-12 65.9
Msa0427120 AT4G23550.1 44.262 61 33 1 164 223 137 197 3.31e-12 65.5
Msa0427120 AT2G40740.3 50.000 58 26 1 167 221 182 239 3.62e-12 65.1
Msa0427120 AT4G12020.2 43.478 69 38 1 166 234 467 534 3.65e-12 66.2
Msa0427120 AT4G12020.2 70.000 40 12 0 148 187 622 661 7.49e-12 65.5
Msa0427120 AT4G12020.3 43.478 69 38 1 166 234 467 534 3.68e-12 66.2
Msa0427120 AT4G12020.3 70.000 40 12 0 148 187 622 661 7.42e-12 65.5
Msa0427120 AT4G12020.6 43.478 69 38 1 166 234 467 534 3.73e-12 66.2
Msa0427120 AT4G12020.6 70.000 40 12 0 148 187 622 661 7.44e-12 65.5
Msa0427120 AT4G12020.8 43.478 69 38 1 166 234 467 534 3.73e-12 66.2
Msa0427120 AT4G12020.8 70.000 40 12 0 148 187 622 661 7.44e-12 65.5
Msa0427120 AT4G12020.4 43.478 69 38 1 166 234 467 534 3.76e-12 66.2
Msa0427120 AT4G12020.4 70.000 40 12 0 148 187 622 661 7.85e-12 65.1
Msa0427120 AT4G12020.10 43.478 69 38 1 166 234 467 534 3.86e-12 66.2
Msa0427120 AT4G12020.10 70.000 40 12 0 148 187 622 661 7.70e-12 65.5
Msa0427120 AT4G12020.7 43.478 69 38 1 166 234 467 534 3.95e-12 66.2
Msa0427120 AT4G12020.7 70.000 40 12 0 148 187 622 661 7.81e-12 65.1
Msa0427120 AT4G12020.5 43.478 69 38 1 166 234 400 467 3.96e-12 66.2
Msa0427120 AT4G12020.5 70.000 40 12 0 148 187 555 594 8.58e-12 65.1
Msa0427120 AT4G12020.1 43.478 69 38 1 166 234 467 534 4.07e-12 66.2
Msa0427120 AT4G12020.1 70.000 40 12 0 148 187 622 661 7.88e-12 65.1
Msa0427120 AT4G12020.9 43.478 69 38 1 166 234 467 534 4.07e-12 66.2
Msa0427120 AT4G12020.9 70.000 40 12 0 148 187 622 661 7.88e-12 65.1
Msa0427120 AT4G12020.11 43.478 69 38 1 166 234 467 534 5.72e-12 65.5
Msa0427120 AT4G12020.11 70.000 40 12 0 148 187 622 661 9.91e-12 65.1
Msa0427120 AT1G80590.1 46.552 58 28 1 168 222 86 143 1.76e-11 62.4
Msa0427120 AT5G45050.4 35.165 91 58 1 134 223 1008 1098 3.08e-11 63.5
Msa0427120 AT5G22570.1 46.552 58 28 1 168 222 111 168 3.20e-11 62.4
Msa0427120 AT5G24110.1 39.759 83 38 2 165 235 111 193 3.42e-11 62.4
Msa0427120 AT5G45050.1 35.165 91 58 1 134 223 1147 1237 3.46e-11 63.2
Msa0427120 AT5G45050.2 35.165 91 58 1 134 223 1119 1209 3.65e-11 63.2
Msa0427120 AT2G40750.1 34.188 117 69 2 120 228 100 216 5.21e-11 62.0

Find 88 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTATCTATACCTATTCT+AGG 0.247192 3_2:-77779935 Msa0427120:three_prime_UTR
AATTAGTGAAAAGTTGAAAA+TGG 0.254141 3_2:+77779857 None:intergenic
GATCATCTTACTTCTAGTTT+TGG 0.279525 3_2:-77781926 Msa0427120:CDS
GGTACCACTTCTCCAACTTT+AGG 0.294988 3_2:-77782290 Msa0427120:five_prime_UTR
TCAGCAAAATTTGCAGCTTC+AGG 0.298513 3_2:+77781992 None:intergenic
ACTAGCTAGCTACAAGTTAA+TGG 0.299451 3_2:-77782376 Msa0427120:five_prime_UTR
TATGTGGTTATCACCATTCT+TGG 0.301275 3_2:+77780165 None:intergenic
GATTCTTCAAGTTCATTTGA+TGG 0.326616 3_2:+77780120 None:intergenic
AAACATGACCTTACCTCCTT+TGG 0.332541 3_2:-77782074 Msa0427120:CDS
CTGAACTTACTAATTTCTTC+TGG 0.337305 3_2:-77780086 Msa0427120:CDS
ACAGATCCAAAGTGAATTCA+TGG 0.376673 3_2:-77781877 Msa0427120:intron
CTTTGGATCTGTTCAAAGAA+AGG 0.382028 3_2:+77781888 None:intergenic
ACCAACATATATTTCTCTCT+TGG 0.391421 3_2:-77780044 Msa0427120:three_prime_UTR
GGTTGTAGATCTAGAGGGTT+GGG 0.401130 3_2:-77782269 Msa0427120:five_prime_UTR
AATGGGAGGAGCAGATAGAA+AGG 0.414527 3_2:+77779875 None:intergenic
ATTAGTGAAAAGTTGAAAAT+GGG 0.419690 3_2:+77779858 None:intergenic
AAAAGGCAAAGCAATGGAAA+AGG 0.419693 3_2:-77782429 None:intergenic
AAAGGAGGTAAGGTCATGTT+TGG 0.420084 3_2:+77782076 None:intergenic
GTTGGGTAGAGATTATAGAT+TGG 0.424727 3_2:-77782252 Msa0427120:five_prime_UTR
TCATGAGATCCCTATGCAAA+TGG 0.425861 3_2:-77782119 Msa0427120:CDS
CCATAGCTTGTTTGATCAAG+AGG 0.452922 3_2:-77782146 Msa0427120:CDS
TTCTGAAAAGAAAACTCTAT+AGG 0.453642 3_2:-77782311 Msa0427120:five_prime_UTR
AACATATATTTCTCTCTTGG+AGG 0.453995 3_2:-77780041 Msa0427120:three_prime_UTR
TATGATTGAATTTAGGGCAT+GGG 0.455045 3_2:-77781527 Msa0427120:intron
CATCATCATAATCAACAACT+AGG 0.465924 3_2:-77781448 Msa0427120:CDS
TACCTTTCAAAGATTGATGA+TGG 0.466958 3_2:+77782044 None:intergenic
TGAAGAAAATGAAGGGAAGA+AGG 0.467112 3_2:-77781408 Msa0427120:CDS
CATGAGATCCCTATGCAAAT+GGG 0.477999 3_2:-77782118 Msa0427120:CDS
ATCTCACCATGAATTCACTT+TGG 0.483028 3_2:+77781871 None:intergenic
GAAGGAAGGTGAGGGAGCCT+AGG 0.492345 3_2:-77781390 Msa0427120:CDS
CTAGATCTACAACCTAAAGT+TGG 0.495671 3_2:+77782278 None:intergenic
AAAGGCAAAGCAATGGAAAA+GGG 0.497716 3_2:-77782428 None:intergenic
TATGCATGATTTCCTAGAAT+AGG 0.499233 3_2:+77779923 None:intergenic
CATAAAGATGAAGAAAATGA+AGG 0.501193 3_2:-77781416 Msa0427120:CDS
AGAAGTAACTGATAGCTTGA+TGG 0.501267 3_2:-77781503 Msa0427120:CDS
AAGGTCATGTTTGGAGGGAA+AGG 0.503288 3_2:+77782085 None:intergenic
TTGAACAGCTGTTGCAAGGA+GGG 0.504686 3_2:+77781967 None:intergenic
AGCAATGGAAAAGGGAAAGT+TGG 0.504789 3_2:-77782420 None:intergenic
ATTAAGACTGAATAATTAAG+TGG 0.508809 3_2:-77779995 Msa0427120:three_prime_UTR
TGAAGGGAAGAAGGAAGGTG+AGG 0.508932 3_2:-77781399 Msa0427120:CDS
ATCTGTTCAAAGAAAGGAGT+TGG 0.513213 3_2:+77781894 None:intergenic
CCTCTTGATCAAACAAGCTA+TGG 0.514036 3_2:+77782146 None:intergenic
GAAGTAACTGATAGCTTGAT+GGG 0.521967 3_2:-77781502 Msa0427120:CDS
AGCATGTCTTCCTTCATATG+TGG 0.525478 3_2:+77780149 None:intergenic
GCAATTATCCAAAGGAGGTA+AGG 0.525699 3_2:+77782066 None:intergenic
GAAAATGAAGGGAAGAAGGA+AGG 0.526149 3_2:-77781404 Msa0427120:CDS
AAAGAAACGTGTGGAGCGAT+TGG 0.527506 3_2:-77780196 Msa0427120:CDS
ATGATTGAATTTAGGGCATG+GGG 0.530214 3_2:-77781526 Msa0427120:intron
GAAGGGAAGAAGGAAGGTGA+GGG 0.532669 3_2:-77781398 Msa0427120:CDS
TCTCCTTCTCTATATAACCT+TGG 0.538852 3_2:+77782225 None:intergenic
GGAGGTAAGGTCATGTTTGG+AGG 0.539020 3_2:+77782079 None:intergenic
GGTTACAAGTGGAGGAAGTA+CGG 0.540793 3_2:-77781325 Msa0427120:CDS
GACTGAATAATTAAGTGGTG+TGG 0.542090 3_2:-77779990 Msa0427120:three_prime_UTR
ATCATCATAATCAACAACTA+GGG 0.543445 3_2:-77781447 Msa0427120:CDS
TGCCATCATCAATCTTTGAA+AGG 0.544773 3_2:-77782046 Msa0427120:CDS
TATTGAACCCCATTTGCATA+GGG 0.544992 3_2:+77782110 None:intergenic
ACGTGTGGAGCGATTGGCTG+AGG 0.546212 3_2:-77780190 Msa0427120:CDS
ATATTGAACCCCATTTGCAT+AGG 0.547777 3_2:+77782109 None:intergenic
ATGGTGATAACCACATATGA+AGG 0.551016 3_2:-77780159 Msa0427120:CDS
CTTTAGGTTGTAGATCTAGA+GGG 0.555482 3_2:-77782274 Msa0427120:five_prime_UTR
GATTATAGATTGGATTGCCA+AGG 0.559310 3_2:-77782242 Msa0427120:five_prime_UTR
ACTTTAGGTTGTAGATCTAG+AGG 0.559824 3_2:-77782275 Msa0427120:five_prime_UTR
AGGTTGTAGATCTAGAGGGT+TGG 0.560163 3_2:-77782270 Msa0427120:five_prime_UTR
GCTTCAGGAGAAAGTGATGA+AGG 0.566189 3_2:+77782007 None:intergenic
GACGTGGATGTGTTGGATGA+TGG 0.572793 3_2:-77781346 Msa0427120:CDS
CATGAGCGACGTGGATGTGT+TGG 0.578149 3_2:-77781353 Msa0427120:CDS
GAGGTAAGGTCATGTTTGGA+GGG 0.578786 3_2:+77782080 None:intergenic
GAGGAAGTACGGACAGAAAG+TGG 0.580020 3_2:-77781314 Msa0427120:CDS
TCCAAGAGAGAAATATATGT+TGG 0.580358 3_2:+77780043 None:intergenic
ATAAAGATGAAGAAAATGAA+GGG 0.586041 3_2:-77781415 Msa0427120:CDS
ACAACCTAAAGTTGGAGAAG+TGG 0.587621 3_2:+77782286 None:intergenic
ATTGGCTGAGGATCCAAGAA+TGG 0.588263 3_2:-77780178 Msa0427120:CDS
TAAAGAACACACAGCATCCA+AGG 0.591239 3_2:-77781291 Msa0427120:intron
TTGCCAAGGTTATATAGAGA+AGG 0.592512 3_2:-77782228 Msa0427120:five_prime_UTR
CAACACATCCACGTCGCTCA+TGG 0.593426 3_2:+77781354 None:intergenic
AGATGATCTTCAAATTCTCG+TGG 0.612771 3_2:+77781941 None:intergenic
AGTGAAAAGTTGAAAATGGG+AGG 0.612976 3_2:+77779861 None:intergenic
GACAATTATCTTGTGTGCAA+CGG 0.619219 3_2:+77780223 None:intergenic
CTTCAAGACCATGAGCGACG+TGG 0.626402 3_2:-77781362 Msa0427120:CDS
TGGATGATGGTTACAAGTGG+AGG 0.635586 3_2:-77781333 Msa0427120:CDS
ATGAGATCCCTATGCAAATG+GGG 0.638441 3_2:-77782117 Msa0427120:CDS
TGATGATGGCAATTATCCAA+AGG 0.643521 3_2:+77782058 None:intergenic
ATGGTCTTGAAGCAAAACCT+AGG 0.654328 3_2:+77781373 None:intergenic
TTGTCGAGTAAAGAAACGTG+TGG 0.654452 3_2:-77780205 Msa0427120:CDS
TCATCATAATCAACAACTAG+GGG 0.662114 3_2:-77781446 Msa0427120:CDS
TGTTGGATGATGGTTACAAG+TGG 0.666245 3_2:-77781336 Msa0427120:CDS
TTTGAACAGCTGTTGCAAGG+AGG 0.670990 3_2:+77781966 None:intergenic
TGATGGCAATTATCCAAAGG+AGG 0.672690 3_2:+77782061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTGCTTATATTTTTTTA+AGG - chr3_2:77780550-77780569 Msa0427120:intron 10.0%
!!! TATTGCTTATATTTTTTTAA+GGG - chr3_2:77780551-77780570 Msa0427120:intron 10.0%
!!! GTTTATTAGAATTTTATATT+TGG - chr3_2:77780987-77781006 Msa0427120:intron 10.0%
!!! AAAATAAATCTTAACATTTT+GGG + chr3_2:77781327-77781346 None:intergenic 10.0%
!!! TAAAATAAATCTTAACATTT+TGG + chr3_2:77781328-77781347 None:intergenic 10.0%
!! GATATGTTATATATATATGT+AGG - chr3_2:77780426-77780445 Msa0427120:intron 15.0%
!! ATTTACCTATCAAAAAATAT+AGG - chr3_2:77780514-77780533 Msa0427120:intron 15.0%
!!! ATTGCTTATATTTTTTTAAG+GGG - chr3_2:77780552-77780571 Msa0427120:intron 15.0%
!!! ATAACATTATTGTTTTTTAG+AGG + chr3_2:77782407-77782426 None:intergenic 15.0%
!! GTGGAATATTTGAAAATTTA+AGG + chr3_2:77780330-77780349 None:intergenic 20.0%
!!! ATTTGCCTATATTTTTTGAT+AGG + chr3_2:77780522-77780541 None:intergenic 20.0%
!! ATAAAGATGAAGAAAATGAA+GGG - chr3_2:77780753-77780772 Msa0427120:intron 20.0%
!! TTCTAATAAACAATAATGAG+AGG + chr3_2:77780978-77780997 None:intergenic 20.0%
!!! TATTTGGCTTATGATTATTT+TGG - chr3_2:77781003-77781022 Msa0427120:intron 20.0%
!!! TTTGATAAGTTTTCATTTGA+GGG + chr3_2:77781473-77781492 None:intergenic 20.0%
!!! TTTTGATAAGTTTTCATTTG+AGG + chr3_2:77781474-77781493 None:intergenic 20.0%
!!! TATAGTACTATTTTCCTTTT+TGG + chr3_2:77781872-77781891 None:intergenic 20.0%
!! ATTAAGACTGAATAATTAAG+TGG - chr3_2:77782173-77782192 Msa0427120:CDS 20.0%
!! ATATTATCTATACCTATTCT+AGG - chr3_2:77782233-77782252 Msa0427120:five_prime_UTR 20.0%
!! ATTAGTGAAAAGTTGAAAAT+GGG + chr3_2:77782313-77782332 None:intergenic 20.0%
!! AATTAGTGAAAAGTTGAAAA+TGG + chr3_2:77782314-77782333 None:intergenic 20.0%
!! TTCTGAAAAGAAAACTCTAT+AGG - chr3_2:77779857-77779876 Msa0427120:three_prime_UTR 25.0%
! GTTTGTGATTAATATGTAAG+TGG + chr3_2:77780493-77780512 None:intergenic 25.0%
! AAACTTAACTCTCTTTACAA+AGG + chr3_2:77780611-77780630 None:intergenic 25.0%
! GTTGGATATGATTGAATTTA+GGG - chr3_2:77780635-77780654 Msa0427120:intron 25.0%
! ATCATCATAATCAACAACTA+GGG - chr3_2:77780721-77780740 Msa0427120:intron 25.0%
!! CTTCATTTTCTTCATCTTTA+TGG + chr3_2:77780754-77780773 None:intergenic 25.0%
! CATAAAGATGAAGAAAATGA+AGG - chr3_2:77780752-77780771 Msa0427120:intron 25.0%
! AAAAGAGAGAAAATTTGAAG+TGG + chr3_2:77780918-77780937 None:intergenic 25.0%
! AATAAACAATAATGAGAGGA+GGG + chr3_2:77780974-77780993 None:intergenic 25.0%
! TAATAAACAATAATGAGAGG+AGG + chr3_2:77780975-77780994 None:intergenic 25.0%
! GGTTATACTCTAACATATAT+AGG + chr3_2:77781213-77781232 None:intergenic 25.0%
!! TTGATAAGTTTTCATTTGAG+GGG + chr3_2:77781472-77781491 None:intergenic 25.0%
! AAGTAAAAACCATCATTACT+AGG + chr3_2:77781749-77781768 None:intergenic 25.0%
! GTACAGCATAAATAAAAAAC+AGG + chr3_2:77781774-77781793 None:intergenic 25.0%
! GTATTAAGGACAAAGAAAAT+GGG + chr3_2:77781809-77781828 None:intergenic 25.0%
!!! AGTTATATAGGAAGGTATTA+AGG + chr3_2:77781823-77781842 None:intergenic 25.0%
! TAATACCTTCCTATATAACT+TGG - chr3_2:77781823-77781842 Msa0427120:intron 25.0%
!!! TTTACTTTTAGAACAAGTCT+TGG - chr3_2:77782355-77782374 Msa0427120:five_prime_UTR 25.0%
!!! TTGTTTTTGAACTTTGGTTG+AGG + chr3_2:77779823-77779842 None:intergenic 30.0%
!!! GAGAGTTTGTTTTTGAACTT+TGG + chr3_2:77779829-77779848 None:intergenic 30.0%
TACCTTTCAAAGATTGATGA+TGG + chr3_2:77780127-77780146 None:intergenic 30.0%
!!! GATCATCTTACTTCTAGTTT+TGG - chr3_2:77780242-77780261 Msa0427120:intron 30.0%
AAATATAGATACTAGCTGTC+TGG - chr3_2:77780384-77780403 Msa0427120:intron 30.0%
! GTAAAGAGAGTTAAGTTTTG+TGG - chr3_2:77780613-77780632 Msa0427120:intron 30.0%
GGTTGGATATGATTGAATTT+AGG - chr3_2:77780634-77780653 Msa0427120:intron 30.0%
! ATATGATTGAATTTAGGGCA+TGG - chr3_2:77780640-77780659 Msa0427120:intron 30.0%
! TATGATTGAATTTAGGGCAT+GGG - chr3_2:77780641-77780660 Msa0427120:intron 30.0%
CATCATCATAATCAACAACT+AGG - chr3_2:77780720-77780739 Msa0427120:intron 30.0%
TCATCATAATCAACAACTAG+GGG - chr3_2:77780722-77780741 Msa0427120:intron 30.0%
!!! TGATTATTTTGGTGCTTAAG+AGG - chr3_2:77781014-77781033 Msa0427120:intron 30.0%
!!! GATTATTTTGGTGCTTAAGA+GGG - chr3_2:77781015-77781034 Msa0427120:intron 30.0%
AGATTTCACTATATGTCTTC+TGG - chr3_2:77781071-77781090 Msa0427120:intron 30.0%
GATTTCACTATATGTCTTCT+GGG - chr3_2:77781072-77781091 Msa0427120:intron 30.0%
! AGAGTCCTAATTTTCAACAT+CGG + chr3_2:77781114-77781133 None:intergenic 30.0%
TATGCGTAATGTTGAAAGTT+AGG - chr3_2:77781145-77781164 Msa0427120:intron 30.0%
TATATACTGAATGAGTGCAA+AGG + chr3_2:77781254-77781273 None:intergenic 30.0%
! TGATAAGTTTTCATTTGAGG+GGG + chr3_2:77781471-77781490 None:intergenic 30.0%
!! AGTAAGAAGTGTCATATTGT+TGG + chr3_2:77781567-77781586 None:intergenic 30.0%
AACATTTGCTTGAATTTGTG+TGG - chr3_2:77781606-77781625 Msa0427120:intron 30.0%
ACATTTGCTTGAATTTGTGT+GGG - chr3_2:77781607-77781626 Msa0427120:intron 30.0%
GGTATTAAGGACAAAGAAAA+TGG + chr3_2:77781810-77781829 None:intergenic 30.0%
GTAATCCAAGTTATATAGGA+AGG + chr3_2:77781831-77781850 None:intergenic 30.0%
CTGTGTAATCCAAGTTATAT+AGG + chr3_2:77781835-77781854 None:intergenic 30.0%
TATGTACTTTAGCACCAAAA+AGG - chr3_2:77781855-77781874 Msa0427120:intron 30.0%
! GATTCTTCAAGTTCATTTGA+TGG + chr3_2:77782051-77782070 None:intergenic 30.0%
CTGAACTTACTAATTTCTTC+TGG - chr3_2:77782082-77782101 Msa0427120:CDS 30.0%
ACCAACATATATTTCTCTCT+TGG - chr3_2:77782124-77782143 Msa0427120:CDS 30.0%
TCCAAGAGAGAAATATATGT+TGG + chr3_2:77782128-77782147 None:intergenic 30.0%
AACATATATTTCTCTCTTGG+AGG - chr3_2:77782127-77782146 Msa0427120:CDS 30.0%
TATGCATGATTTCCTAGAAT+AGG + chr3_2:77782248-77782267 None:intergenic 30.0%
ACTAGCTAGCTACAAGTTAA+TGG - chr3_2:77779792-77779811 Msa0427120:three_prime_UTR 35.0%
CTAGATCTACAACCTAAAGT+TGG + chr3_2:77779893-77779912 None:intergenic 35.0%
!! ACTTTAGGTTGTAGATCTAG+AGG - chr3_2:77779893-77779912 Msa0427120:three_prime_UTR 35.0%
!! CTTTAGGTTGTAGATCTAGA+GGG - chr3_2:77779894-77779913 Msa0427120:three_prime_UTR 35.0%
GTTGGGTAGAGATTATAGAT+TGG - chr3_2:77779916-77779935 Msa0427120:three_prime_UTR 35.0%
GATTATAGATTGGATTGCCA+AGG - chr3_2:77779926-77779945 Msa0427120:three_prime_UTR 35.0%
TTGCCAAGGTTATATAGAGA+AGG - chr3_2:77779940-77779959 Msa0427120:three_prime_UTR 35.0%
TCTCCTTCTCTATATAACCT+TGG + chr3_2:77779946-77779965 None:intergenic 35.0%
TATTGAACCCCATTTGCATA+GGG + chr3_2:77780061-77780080 None:intergenic 35.0%
ATATTGAACCCCATTTGCAT+AGG + chr3_2:77780062-77780081 None:intergenic 35.0%
!! TGATGATGGCAATTATCCAA+AGG + chr3_2:77780113-77780132 None:intergenic 35.0%
TGCCATCATCAATCTTTGAA+AGG - chr3_2:77780122-77780141 Msa0427120:CDS 35.0%
AGATGATCTTCAAATTCTCG+TGG + chr3_2:77780230-77780249 None:intergenic 35.0%
!!! CATCTTACTTCTAGTTTTGG+AGG - chr3_2:77780245-77780264 Msa0427120:intron 35.0%
ATCTGTTCAAAGAAAGGAGT+TGG + chr3_2:77780277-77780296 None:intergenic 35.0%
CTTTGGATCTGTTCAAAGAA+AGG + chr3_2:77780283-77780302 None:intergenic 35.0%
ACAGATCCAAAGTGAATTCA+TGG - chr3_2:77780291-77780310 Msa0427120:intron 35.0%
ATCTCACCATGAATTCACTT+TGG + chr3_2:77780300-77780319 None:intergenic 35.0%
!! AGAGAGTTAAGTTTTGTGGT+TGG - chr3_2:77780617-77780636 Msa0427120:intron 35.0%
! ATGATTGAATTTAGGGCATG+GGG - chr3_2:77780642-77780661 Msa0427120:intron 35.0%
AGAAGTAACTGATAGCTTGA+TGG - chr3_2:77780665-77780684 Msa0427120:intron 35.0%
GAAGTAACTGATAGCTTGAT+GGG - chr3_2:77780666-77780685 Msa0427120:intron 35.0%
TTGATGGGAAAAAGAAGTAG+TGG - chr3_2:77780681-77780700 Msa0427120:intron 35.0%
TGAAGAAAATGAAGGGAAGA+AGG - chr3_2:77780760-77780779 Msa0427120:intron 35.0%
GGAGATAATGAATACTACCT+TGG + chr3_2:77780897-77780916 None:intergenic 35.0%
GACAACACTGATAATCATTG+AGG - chr3_2:77781037-77781056 Msa0427120:intron 35.0%
GTTTGCCGATGTTGAAAATT+AGG - chr3_2:77781106-77781125 Msa0427120:intron 35.0%
! ACAATTTTGCTTGACGACAT+AGG - chr3_2:77781277-77781296 Msa0427120:intron 35.0%
! TTTGCACGACATGTATTTTG+TGG - chr3_2:77781381-77781400 Msa0427120:CDS 35.0%
! TTGCACGACATGTATTTTGT+GGG - chr3_2:77781382-77781401 Msa0427120:CDS 35.0%
! ATGTATTTTGTGGGTCATGA+GGG - chr3_2:77781391-77781410 Msa0427120:CDS 35.0%
CTCATAATTCATCCACCTAT+AGG + chr3_2:77781420-77781439 None:intergenic 35.0%
ACCATCATTACTAGGAGAAA+GGG + chr3_2:77781741-77781760 None:intergenic 35.0%
AACCATCATTACTAGGAGAA+AGG + chr3_2:77781742-77781761 None:intergenic 35.0%
GACAATTATCTTGTGTGCAA+CGG + chr3_2:77781948-77781967 None:intergenic 35.0%
TATGTGGTTATCACCATTCT+TGG + chr3_2:77782006-77782025 None:intergenic 35.0%
ATGGTGATAACCACATATGA+AGG - chr3_2:77782009-77782028 Msa0427120:CDS 35.0%
GACTGAATAATTAAGTGGTG+TGG - chr3_2:77782178-77782197 Msa0427120:exon 35.0%
AGTGAAAAGTTGAAAATGGG+AGG + chr3_2:77782310-77782329 None:intergenic 35.0%
ACAACCTAAAGTTGGAGAAG+TGG + chr3_2:77779885-77779904 None:intergenic 40.0%
CCTCTTGATCAAACAAGCTA+TGG + chr3_2:77780025-77780044 None:intergenic 40.0%
!! CCATAGCTTGTTTGATCAAG+AGG - chr3_2:77780022-77780041 Msa0427120:three_prime_UTR 40.0%
TCATGAGATCCCTATGCAAA+TGG - chr3_2:77780049-77780068 Msa0427120:three_prime_UTR 40.0%
CATGAGATCCCTATGCAAAT+GGG - chr3_2:77780050-77780069 Msa0427120:three_prime_UTR 40.0%
ATGAGATCCCTATGCAAATG+GGG - chr3_2:77780051-77780070 Msa0427120:three_prime_UTR 40.0%
AAAGGAGGTAAGGTCATGTT+TGG + chr3_2:77780095-77780114 None:intergenic 40.0%
AAACATGACCTTACCTCCTT+TGG - chr3_2:77780094-77780113 Msa0427120:CDS 40.0%
GCAATTATCCAAAGGAGGTA+AGG + chr3_2:77780105-77780124 None:intergenic 40.0%
TGATGGCAATTATCCAAAGG+AGG + chr3_2:77780110-77780129 None:intergenic 40.0%
TCAGCAAAATTTGCAGCTTC+AGG + chr3_2:77780179-77780198 None:intergenic 40.0%
! GTTTTTGAACAGCTGTTGCA+AGG + chr3_2:77780208-77780227 None:intergenic 40.0%
!!! CTTACTTCTAGTTTTGGAGG+AGG - chr3_2:77780248-77780267 Msa0427120:intron 40.0%
ATGGGAAAAAGAAGTAGTGG+AGG - chr3_2:77780684-77780703 Msa0427120:intron 40.0%
GAAAATGAAGGGAAGAAGGA+AGG - chr3_2:77780764-77780783 Msa0427120:intron 40.0%
! ATGGTCTTGAAGCAAAACCT+AGG + chr3_2:77780798-77780817 None:intergenic 40.0%
! TGTTGGATGATGGTTACAAG+TGG - chr3_2:77780832-77780851 Msa0427120:intron 40.0%
TAAAGAACACACAGCATCCA+AGG - chr3_2:77780877-77780896 Msa0427120:intron 40.0%
AGGAGAAACTTCTTGGTACT+TGG + chr3_2:77781234-77781253 None:intergenic 40.0%
AGTGCAAAGGAGAAACTTCT+TGG + chr3_2:77781241-77781260 None:intergenic 40.0%
! CATGTATTTTGTGGGTCATG+AGG - chr3_2:77781390-77781409 Msa0427120:CDS 40.0%
! TGTATTTTGTGGGTCATGAG+GGG - chr3_2:77781392-77781411 Msa0427120:CDS 40.0%
TGTGGGAGCTAATAAAAGTG+TGG - chr3_2:77781624-77781643 Msa0427120:intron 40.0%
! GTGGGAGCTAATAAAAGTGT+GGG - chr3_2:77781625-77781644 Msa0427120:intron 40.0%
! TGGGAGCTAATAAAAGTGTG+GGG - chr3_2:77781626-77781645 Msa0427120:intron 40.0%
ACCCTTTCTCCTAGTAATGA+TGG - chr3_2:77781737-77781756 Msa0427120:intron 40.0%
AACGGTAGTAGCTTCTACAA+AGG + chr3_2:77781930-77781949 None:intergenic 40.0%
TTGTCGAGTAAAGAAACGTG+TGG - chr3_2:77781963-77781982 Msa0427120:CDS 40.0%
AGCATGTCTTCCTTCATATG+TGG + chr3_2:77782022-77782041 None:intergenic 40.0%
GGTACCACTTCTCCAACTTT+AGG - chr3_2:77779878-77779897 Msa0427120:three_prime_UTR 45.0%
AGGTTGTAGATCTAGAGGGT+TGG - chr3_2:77779898-77779917 Msa0427120:three_prime_UTR 45.0%
GGTTGTAGATCTAGAGGGTT+GGG - chr3_2:77779899-77779918 Msa0427120:three_prime_UTR 45.0%
AAGGTCATGTTTGGAGGGAA+AGG + chr3_2:77780086-77780105 None:intergenic 45.0%
GAGGTAAGGTCATGTTTGGA+GGG + chr3_2:77780091-77780110 None:intergenic 45.0%
GCTTCAGGAGAAAGTGATGA+AGG + chr3_2:77780164-77780183 None:intergenic 45.0%
TTGAACAGCTGTTGCAAGGA+GGG + chr3_2:77780204-77780223 None:intergenic 45.0%
TTTGAACAGCTGTTGCAAGG+AGG + chr3_2:77780205-77780224 None:intergenic 45.0%
!!! ACTTCTAGTTTTGGAGGAGG+AGG - chr3_2:77780251-77780270 Msa0427120:intron 45.0%
GCTATAGTTCACATGCATGG+TGG + chr3_2:77780349-77780368 None:intergenic 45.0%
GTGGCTATAGTTCACATGCA+TGG + chr3_2:77780352-77780371 None:intergenic 45.0%
! TGGATGATGGTTACAAGTGG+AGG - chr3_2:77780835-77780854 Msa0427120:intron 45.0%
GGTTACAAGTGGAGGAAGTA+CGG - chr3_2:77780843-77780862 Msa0427120:intron 45.0%
TTTGCTTGACGACATAGGTG+TGG - chr3_2:77781282-77781301 Msa0427120:intron 45.0%
AAAGAAACGTGTGGAGCGAT+TGG - chr3_2:77781972-77781991 Msa0427120:CDS 45.0%
ATTGGCTGAGGATCCAAGAA+TGG - chr3_2:77781990-77782009 Msa0427120:CDS 45.0%
AATGGGAGGAGCAGATAGAA+AGG + chr3_2:77782296-77782315 None:intergenic 45.0%
!! TATATTTAATAAAAATTAAG+TGG + chr3_2:77780371-77780390 None:intergenic 5.0%
GGAGGTAAGGTCATGTTTGG+AGG + chr3_2:77780092-77780111 None:intergenic 50.0%
TGAAGGGAAGAAGGAAGGTG+AGG - chr3_2:77780769-77780788 Msa0427120:intron 50.0%
GAAGGGAAGAAGGAAGGTGA+GGG - chr3_2:77780770-77780789 Msa0427120:intron 50.0%
GACGTGGATGTGTTGGATGA+TGG - chr3_2:77780822-77780841 Msa0427120:intron 50.0%
! GAGGAAGTACGGACAGAAAG+TGG - chr3_2:77780854-77780873 Msa0427120:intron 50.0%
CTTCAAGACCATGAGCGACG+TGG - chr3_2:77780806-77780825 Msa0427120:intron 55.0%
CAACACATCCACGTCGCTCA+TGG + chr3_2:77780817-77780836 None:intergenic 55.0%
CATGAGCGACGTGGATGTGT+TGG - chr3_2:77780815-77780834 Msa0427120:intron 55.0%
TCATGAGGGGAGCCTATAGG+TGG - chr3_2:77781405-77781424 Msa0427120:CDS 55.0%
GAAGGAAGGTGAGGGAGCCT+AGG - chr3_2:77780778-77780797 Msa0427120:intron 60.0%
GGGTCATGAGGGGAGCCTAT+AGG - chr3_2:77781402-77781421 Msa0427120:CDS 60.0%
! ACGTGTGGAGCGATTGGCTG+AGG - chr3_2:77781978-77781997 Msa0427120:CDS 60.0%
! GAGGGGGAGCGTGTCGAGAT+GGG + chr3_2:77781455-77781474 None:intergenic 65.0%
! TGAGGGGGAGCGTGTCGAGA+TGG + chr3_2:77781456-77781475 None:intergenic 65.0%
! GGGGAGCGTGTCGAGATGGG+TGG + chr3_2:77781452-77781471 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77779754 77782436 77779754 ID=Msa0427120;Name=Msa0427120
chr3_2 mRNA 77779754 77782436 77779754 ID=Msa0427120-mRNA-1;Parent=Msa0427120;Name=Msa0427120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=242|1|1|1|1|1|3|329|243
chr3_2 exon 77779754 77780254 77779754 ID=Msa0427120-mRNA-1:exon:20319;Parent=Msa0427120-mRNA-1
chr3_2 exon 77781292 77781534 77781292 ID=Msa0427120-mRNA-1:exon:20318;Parent=Msa0427120-mRNA-1
chr3_2 exon 77781878 77782436 77781878 ID=Msa0427120-mRNA-1:exon:20317;Parent=Msa0427120-mRNA-1
chr3_2 five_prime_UTR 77782195 77782436 77782195 ID=Msa0427120-mRNA-1:five_prime_utr;Parent=Msa0427120-mRNA-1
chr3_2 CDS 77781878 77782194 77781878 ID=Msa0427120-mRNA-1:cds;Parent=Msa0427120-mRNA-1
chr3_2 CDS 77781292 77781534 77781292 ID=Msa0427120-mRNA-1:cds;Parent=Msa0427120-mRNA-1
chr3_2 CDS 77780083 77780254 77780083 ID=Msa0427120-mRNA-1:cds;Parent=Msa0427120-mRNA-1
chr3_2 three_prime_UTR 77779754 77780082 77779754 ID=Msa0427120-mRNA-1:three_prime_utr;Parent=Msa0427120-mRNA-1
Gene Sequence

>Msa0427120

ATGTCAACAACAAATATTGTTAATCACCATAGCTTGTTTGATCAAGAGGAAGATCATGAGATCCCTATGCAAATGGGGTTCAATATTCCTTTCCCTCCAAACATGACCTTACCTCCTTTGGATAATTGCCATCATCAATCTTTGAAAGGTATCAGTGCAATAACACCTTCATCACTTTCTCCTGAAGCTGCAAATTTTGCTGAAACCCTCCTTGCAACAGCTGTTCAAAAACCACGAGAATTTGAAGATCATCTTACTTCTAGTTTTGGAGGAGGAGGCCAACTCCTTTCTTTGAACAGATCCAAAGTGAATTCATGGGCATGGGGAGAAGTAACTGATAGCTTGATGGGAAAAAGAAGTAGTGGAGGAGATGATCAACATCATCATCATAATCAACAACTAGGGGTTTCTGCCATAAAGATGAAGAAAATGAAGGGAAGAAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACCATGAGCGACGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGATTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAATGAACTTGAAGAATCACAAACTCAATCTGAACTTACTAATTTCTTCTGGTAG
Protein sequence

>Msa0427120

MSTTNIVNHHSLFDQEEDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPEAANFAETLLATAVQKPREFEDHLTSSFGGGGQLLSLNRSKVNSWAWGEVTDSLMGKRSSGGDDQHHHHNQQLGVSAIKMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEESQTQSELTNFFW*