Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206440 | XP_039686491.1 | 98.517 | 607 | 9 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206440 | sp|F4IPM3|CB60E_ARATH | 61.551 | 619 | 198 | 13 | 9 | 607 | 1 | 599 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206440 | A0A072VIC7 | 96.046 | 607 | 10 | 1 | 1 | 607 | 1 | 593 | 0.0 | 1207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0206440 | Msa0249360 | 0.931826 | 2.124674e-94 | -8.615850e-47 |
| Msa0206440 | Msa0287850 | 0.933627 | 1.406362e-95 | -8.615850e-47 |
| Msa0206440 | Msa1078660 | 0.803294 | 3.734472e-49 | -8.615850e-47 |
| Msa0206440 | Msa1352590 | 0.825878 | 3.686823e-54 | -8.615850e-47 |
| Msa0206440 | Msa1373070 | 0.837456 | 5.144375e-57 | -8.615850e-47 |
| Msa0206440 | Msa1375130 | 0.800036 | 1.739681e-48 | -8.615850e-47 |
| Msa0206440 | Msa1442940 | 0.941065 | 7.936823e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206440 | MtrunA17_Chr2g0304831 | 96.046 | 607 | 10 | 1 | 1 | 607 | 1 | 593 | 0.0 | 1207 |
| Msa0206440 | MtrunA17_Chr4g0048161 | 52.895 | 639 | 239 | 12 | 8 | 607 | 12 | 627 | 0.0 | 620 |
| Msa0206440 | MtrunA17_Chr2g0281171 | 52.154 | 650 | 245 | 11 | 1 | 607 | 6 | 632 | 0.0 | 607 |
| Msa0206440 | MtrunA17_Chr4g0072691 | 51.525 | 623 | 233 | 9 | 34 | 607 | 3 | 605 | 0.0 | 600 |
| Msa0206440 | MtrunA17_Chr8g0391221 | 42.680 | 403 | 207 | 7 | 11 | 407 | 4 | 388 | 2.88e-100 | 313 |
| Msa0206440 | MtrunA17_Chr6g0484131 | 39.556 | 450 | 238 | 8 | 15 | 450 | 13 | 442 | 3.08e-100 | 313 |
| Msa0206440 | MtrunA17_Chr6g0484111 | 39.823 | 452 | 234 | 9 | 15 | 450 | 13 | 442 | 1.58e-99 | 311 |
| Msa0206440 | MtrunA17_Chr8g0391211 | 40.363 | 441 | 227 | 9 | 34 | 468 | 101 | 511 | 6.74e-99 | 312 |
| Msa0206440 | MtrunA17_Chr6g0484121 | 39.381 | 452 | 240 | 8 | 15 | 452 | 13 | 444 | 3.69e-98 | 308 |
| Msa0206440 | MtrunA17_Chr4g0059411 | 44.562 | 377 | 190 | 5 | 21 | 396 | 10 | 368 | 1.07e-97 | 308 |
| Msa0206440 | MtrunA17_Chr7g0271691 | 32.683 | 410 | 233 | 12 | 10 | 410 | 4 | 379 | 6.79e-55 | 194 |
| Msa0206440 | MtrunA17_Chr7g0271681 | 28.080 | 552 | 296 | 20 | 91 | 607 | 6 | 491 | 3.79e-41 | 155 |
| Msa0206440 | MtrunA17_Chr7g0271671 | 31.519 | 349 | 216 | 7 | 54 | 398 | 60 | 389 | 6.18e-41 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206440 | AT2G24300.3 | 61.502 | 626 | 199 | 13 | 1 | 607 | 1 | 603 | 0.0 | 718 |
| Msa0206440 | AT2G24300.2 | 61.551 | 619 | 198 | 13 | 9 | 607 | 1 | 599 | 0.0 | 716 |
| Msa0206440 | AT4G31000.1 | 58.785 | 609 | 202 | 8 | 1 | 607 | 1 | 562 | 0.0 | 684 |
| Msa0206440 | AT2G24300.1 | 61.416 | 565 | 179 | 12 | 62 | 607 | 8 | 552 | 0.0 | 651 |
| Msa0206440 | AT2G18750.3 | 52.857 | 630 | 248 | 13 | 6 | 607 | 10 | 618 | 0.0 | 598 |
| Msa0206440 | AT2G18750.2 | 52.857 | 630 | 248 | 13 | 6 | 607 | 10 | 618 | 0.0 | 598 |
| Msa0206440 | AT2G18750.1 | 52.857 | 630 | 248 | 13 | 6 | 607 | 10 | 618 | 0.0 | 598 |
| Msa0206440 | AT4G31000.2 | 52.778 | 612 | 213 | 9 | 1 | 607 | 1 | 541 | 0.0 | 595 |
| Msa0206440 | AT5G57580.1 | 51.654 | 635 | 223 | 14 | 30 | 604 | 27 | 637 | 0.0 | 594 |
| Msa0206440 | AT4G25800.1 | 52.640 | 625 | 237 | 13 | 11 | 607 | 2 | 595 | 0.0 | 590 |
| Msa0206440 | AT4G25800.2 | 52.640 | 625 | 237 | 13 | 11 | 607 | 2 | 595 | 0.0 | 590 |
| Msa0206440 | AT5G62570.2 | 42.347 | 392 | 199 | 10 | 36 | 421 | 13 | 383 | 1.15e-94 | 300 |
| Msa0206440 | AT5G62570.1 | 42.132 | 394 | 201 | 10 | 34 | 421 | 26 | 398 | 1.84e-94 | 299 |
| Msa0206440 | AT5G62570.4 | 43.296 | 358 | 178 | 9 | 34 | 387 | 26 | 362 | 2.90e-90 | 284 |
| Msa0206440 | AT1G73805.1 | 38.589 | 482 | 244 | 15 | 11 | 484 | 4 | 441 | 1.45e-84 | 272 |
| Msa0206440 | AT5G26920.3 | 37.705 | 366 | 194 | 10 | 37 | 398 | 28 | 363 | 1.48e-70 | 234 |
| Msa0206440 | AT5G62570.3 | 45.070 | 284 | 132 | 8 | 34 | 314 | 26 | 288 | 2.46e-70 | 229 |
| Msa0206440 | AT5G26920.1 | 37.705 | 366 | 194 | 10 | 37 | 398 | 28 | 363 | 2.40e-69 | 235 |
| Msa0206440 | AT5G26920.2 | 37.432 | 366 | 187 | 11 | 37 | 398 | 28 | 355 | 3.37e-67 | 229 |
Find 164 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTGTGGGAAGCTTCT+TGG | 0.160955 | 2_1:+35735283 | Msa0206440:five_prime_UTR |
| TTTCTCAACTTTATTGTTCT+TGG | 0.176255 | 2_1:-35735400 | None:intergenic |
| CCTCACGTTCCTTTACTTCA+TGG | 0.222284 | 2_1:-35736971 | None:intergenic |
| AAAATTAGCTCCTTCATTAA+TGG | 0.231011 | 2_1:-35738358 | None:intergenic |
| TAATAATTACCTCCAATTTC+AGG | 0.231327 | 2_1:-35738216 | None:intergenic |
| GTGGCATTCTTGTTCTAAAA+TGG | 0.234537 | 2_1:-35736758 | None:intergenic |
| TTAAGCTTAAAGCAGCTTTA+AGG | 0.234780 | 2_1:+35738493 | Msa0206440:CDS |
| CTAGCTAAACCAGGTAGTTT+TGG | 0.249092 | 2_1:-35735474 | None:intergenic |
| ATTAATGAAGGAGCTAATTT+TGG | 0.250528 | 2_1:+35738360 | Msa0206440:CDS |
| GCTTCTGTGGGAAGCTTCTT+GGG | 0.251062 | 2_1:+35735284 | Msa0206440:five_prime_UTR |
| GGAGCGTGCTTTGGCGAAAT+TGG | 0.266457 | 2_1:+35736076 | Msa0206440:CDS |
| TTCAACTTAGCAACTGATTC+TGG | 0.274631 | 2_1:-35736879 | None:intergenic |
| TACTGATTTCGATCCCCTTT+TGG | 0.278841 | 2_1:-35737989 | None:intergenic |
| TGAACAACATTTCCCGTGTT+TGG | 0.304757 | 2_1:-35736849 | None:intergenic |
| CTGCTTTGCATGATGAAGTT+TGG | 0.307314 | 2_1:+35737356 | Msa0206440:CDS |
| TGTAGATTCCTTGGTGAAAA+AGG | 0.308211 | 2_1:+35737903 | Msa0206440:CDS |
| ACATCACAAATAGCATTATC+AGG | 0.313164 | 2_1:+35738159 | Msa0206440:CDS |
| TTTGATATGTATTAGTTTGT+AGG | 0.327913 | 2_1:-35735175 | None:intergenic |
| GGAGATAATAATCCTGAAAT+TGG | 0.329346 | 2_1:+35738204 | Msa0206440:CDS |
| TCCTGACATATTGTAATTCA+TGG | 0.332092 | 2_1:-35738184 | None:intergenic |
| GAAATTGGACCATGCTAAAC+TGG | 0.335370 | 2_1:+35736091 | Msa0206440:CDS |
| GCAAAGACTCTGCTCATCTT+TGG | 0.340248 | 2_1:+35735805 | Msa0206440:CDS |
| TTCTAAATTTAGATATTCAT+TGG | 0.346574 | 2_1:+35735347 | Msa0206440:five_prime_UTR |
| AGGATGATGACAAAATAATA+TGG | 0.355307 | 2_1:-35735155 | None:intergenic |
| ACTTGGTCTATTCTTAAGAT+AGG | 0.367574 | 2_1:-35735324 | None:intergenic |
| TAACACCAAGTCTAAACTTT+CGG | 0.374326 | 2_1:-35737097 | None:intergenic |
| TCTTATCCAGCTAGAATTAT+CGG | 0.375347 | 2_1:-35737072 | None:intergenic |
| ATGAGGAAGTTGATGATGAT+TGG | 0.376041 | 2_1:+35736928 | Msa0206440:CDS |
| GGGAAAAGGCCACTTCTAAC+TGG | 0.383127 | 2_1:+35736993 | Msa0206440:CDS |
| AAGGAAGGAGTAGGAACATT+AGG | 0.389807 | 2_1:+35737035 | Msa0206440:CDS |
| ATTGGATAAGGTTCTAGAAA+TGG | 0.399978 | 2_1:+35735371 | Msa0206440:exon |
| ATTTAGATATTCATTGGGAT+TGG | 0.402995 | 2_1:+35735353 | Msa0206440:five_prime_UTR |
| ATATTCATTGGGATTGGATA+AGG | 0.410512 | 2_1:+35735359 | Msa0206440:five_prime_UTR |
| GCATGATGAAGTTTGGAGAT+TGG | 0.410980 | 2_1:+35737363 | Msa0206440:CDS |
| TAATATTTAATCTCATTGTA+TGG | 0.412134 | 2_1:-35738753 | None:intergenic |
| CCCGGTGCTTCTATTCTTGG+CGG | 0.415229 | 2_1:-35736717 | None:intergenic |
| TTCTTTGACTAATTCCAAAA+GGG | 0.417389 | 2_1:+35737975 | Msa0206440:CDS |
| CAGATGCATACTGCTGCTCT+TGG | 0.421224 | 2_1:-35738041 | None:intergenic |
| AATATCTAAATTTAGAAACT+TGG | 0.424064 | 2_1:-35735341 | None:intergenic |
| ATTGGAGGTAATTATTATCA+TGG | 0.428342 | 2_1:+35738222 | Msa0206440:CDS |
| TGCTCAGGCAAGGCTGTTGT+TGG | 0.429293 | 2_1:+35738465 | Msa0206440:CDS |
| TGAGTTCAAATGCTTGAAAT+CGG | 0.432389 | 2_1:+35738576 | Msa0206440:exon |
| TGAAGAAGTGGAGCGTGCTT+TGG | 0.435844 | 2_1:+35736067 | Msa0206440:CDS |
| ATTCTTTGACTAATTCCAAA+AGG | 0.441002 | 2_1:+35737974 | Msa0206440:CDS |
| TCTAAATTTAGATATTCATT+GGG | 0.444899 | 2_1:+35735348 | Msa0206440:five_prime_UTR |
| TAAAGGAACGTGAGGGGAAA+AGG | 0.446042 | 2_1:+35736979 | Msa0206440:CDS |
| TCGCAGAAGAACTTCGGCTT+AGG | 0.447943 | 2_1:+35738289 | Msa0206440:CDS |
| ATCACTCACTTCAAATCAAA+AGG | 0.454320 | 2_1:+35737788 | Msa0206440:CDS |
| AGTCATCCATGTTGTCTTGT+TGG | 0.456149 | 2_1:+35736824 | Msa0206440:CDS |
| TACCATCTGATAATCCGAAC+TGG | 0.468563 | 2_1:-35738133 | None:intergenic |
| AAAGTTTAGACTTGGTGTTA+AGG | 0.469299 | 2_1:+35737100 | Msa0206440:CDS |
| CTTGGTGTTAAGGTGGCTCC+TGG | 0.469576 | 2_1:+35737110 | Msa0206440:CDS |
| GTGATTCTAAAGAAAAGAAC+TGG | 0.470764 | 2_1:-35737770 | None:intergenic |
| TCAATACAGGTACTTGGTAG+TGG | 0.472613 | 2_1:+35737597 | Msa0206440:intron |
| AGTTGAGAAAAGAAGTTATG+AGG | 0.476851 | 2_1:+35735413 | Msa0206440:CDS |
| GAAAAGAAGTTATGAGGATG+AGG | 0.480063 | 2_1:+35735419 | Msa0206440:CDS |
| CTCCATCATATTCTATGACT+TGG | 0.480405 | 2_1:-35737942 | None:intergenic |
| ATTATCATGGAGACTGGTCT+AGG | 0.480685 | 2_1:+35738235 | Msa0206440:CDS |
| GCTTAGGAGTTCGCAAATGT+TGG | 0.483183 | 2_1:+35738305 | Msa0206440:CDS |
| TTCACAGGAGGGAAGGTTGA+GGG | 0.486109 | 2_1:+35736789 | Msa0206440:CDS |
| TCAATATGAAGGCTATATTG+AGG | 0.486113 | 2_1:+35737282 | Msa0206440:intron |
| ACCATGAATTACAATATGTC+AGG | 0.487561 | 2_1:+35738183 | Msa0206440:CDS |
| CTTTGAAAGCCATGAAGTAA+AGG | 0.491778 | 2_1:+35736962 | Msa0206440:CDS |
| CTTTCACCGATAATTCTAGC+TGG | 0.492240 | 2_1:+35737066 | Msa0206440:CDS |
| AAACAGAAACAAAGTAAGAA+AGG | 0.501330 | 2_1:-35735214 | None:intergenic |
| GGGAAGGTTGAGGGAGAGCA+AGG | 0.502361 | 2_1:+35736798 | Msa0206440:CDS |
| GCTTCTTTGACTGAGTAAGA+TGG | 0.506593 | 2_1:-35735452 | None:intergenic |
| AGCTTAAAGCAGCTTTAAGG+TGG | 0.507495 | 2_1:+35738496 | Msa0206440:CDS |
| ACGGGAAATGTTGTTCAAGT+TGG | 0.508647 | 2_1:+35736855 | Msa0206440:CDS |
| TTGTTCAATACTGCAGTTGG+TGG | 0.508801 | 2_1:-35738729 | None:intergenic |
| CAGGCAAGGCTGTTGTTGGG+TGG | 0.514153 | 2_1:+35738469 | Msa0206440:CDS |
| CAAAACTACCTGGTTTAGCT+AGG | 0.519085 | 2_1:+35735475 | Msa0206440:CDS |
| CGAATCCCGTCACAATATCC+AGG | 0.519800 | 2_1:-35737128 | None:intergenic |
| TAGGAGTTCGCAAATGTTGG+AGG | 0.522224 | 2_1:+35738308 | Msa0206440:CDS |
| TGTAATTGTGGAAGCATTGA+AGG | 0.522949 | 2_1:+35735772 | Msa0206440:CDS |
| CAAACTTCATCATGCAAAGC+AGG | 0.525398 | 2_1:-35737355 | None:intergenic |
| CATGCTAAGACATGTGTGTT+GGG | 0.526739 | 2_1:+35737654 | Msa0206440:CDS |
| GAGGATAATGTCAAGTGCTC+AGG | 0.527975 | 2_1:+35738450 | Msa0206440:CDS |
| GTAATTATTATCATGGAGAC+TGG | 0.529490 | 2_1:+35738229 | Msa0206440:CDS |
| GCAGATGTCTGTAGATTCCT+TGG | 0.531398 | 2_1:+35737894 | Msa0206440:intron |
| GCTCAGGCAAGGCTGTTGTT+GGG | 0.534129 | 2_1:+35738466 | Msa0206440:CDS |
| ATTCACAGGAGGGAAGGTTG+AGG | 0.534510 | 2_1:+35736788 | Msa0206440:CDS |
| CAGCAGTATGCATCTGCAAA+GGG | 0.538227 | 2_1:+35738048 | Msa0206440:CDS |
| AGATTTGCAAGTTAGTCTAA+AGG | 0.541446 | 2_1:+35737016 | Msa0206440:CDS |
| ACCGCCAAGAATAGAAGCAC+CGG | 0.541459 | 2_1:+35736716 | Msa0206440:CDS |
| GGTTTGTTCAATACTGCAGT+TGG | 0.541973 | 2_1:-35738732 | None:intergenic |
| TCAAATGTACAGTGTAATTG+TGG | 0.542933 | 2_1:+35735760 | Msa0206440:intron |
| CTTCTGTGGGAAGCTTCTTG+GGG | 0.543919 | 2_1:+35735285 | Msa0206440:five_prime_UTR |
| TCTATGATCTTTAACAGCAA+AGG | 0.544423 | 2_1:-35737174 | None:intergenic |
| CTTACACTTCTTAATTTCTG+TGG | 0.544648 | 2_1:-35737478 | None:intergenic |
| GACTGGTCTAGGCAGAGAAA+CGG | 0.545642 | 2_1:+35738246 | Msa0206440:CDS |
| TTACTTAAGACCATTAATGA+AGG | 0.546732 | 2_1:+35738348 | Msa0206440:CDS |
| TAAGTTGAATGTTGTTGTGC+TGG | 0.549961 | 2_1:+35736893 | Msa0206440:CDS |
| GCTTAAAGCAGCTTTAAGGT+GGG | 0.551907 | 2_1:+35738497 | Msa0206440:CDS |
| GATAATAATCCTGAAATTGG+AGG | 0.552098 | 2_1:+35738207 | Msa0206440:CDS |
| AGTTCGGATTATCAGATGGT+AGG | 0.552487 | 2_1:+35738135 | Msa0206440:CDS |
| TGGCTCCTGGATATTGTGAC+GGG | 0.555314 | 2_1:+35737123 | Msa0206440:CDS |
| TTCTTAATTTCTGTGGCTCG+CGG | 0.555637 | 2_1:-35737471 | None:intergenic |
| GACCAAGTCATAGAATATGA+TGG | 0.555949 | 2_1:+35737940 | Msa0206440:CDS |
| CTAAGAGGTCTCATTGCTGA+TGG | 0.560083 | 2_1:+35737747 | Msa0206440:CDS |
| GTTCGGATTATCAGATGGTA+GGG | 0.561192 | 2_1:+35738136 | Msa0206440:CDS |
| CCGCCAAGAATAGAAGCACC+GGG | 0.561488 | 2_1:+35736717 | Msa0206440:CDS |
| AGAAGCCGAAAGTTTAGACT+TGG | 0.563077 | 2_1:+35737092 | Msa0206440:CDS |
| ATGAAGTTTGGAGATTGGAT+CGG | 0.564012 | 2_1:+35737368 | Msa0206440:CDS |
| ACATTGTCGCAGAAGAACTT+CGG | 0.565117 | 2_1:+35738283 | Msa0206440:CDS |
| TGTCTTGTTGGATCCAAACA+CGG | 0.566446 | 2_1:+35736836 | Msa0206440:CDS |
| GAATAACTACTCATCCAGTT+CGG | 0.566553 | 2_1:+35738119 | Msa0206440:CDS |
| GTTTAGACTTGGTGTTAAGG+TGG | 0.566982 | 2_1:+35737103 | Msa0206440:CDS |
| GTTAGTCTAAAGGAAGGAGT+AGG | 0.569301 | 2_1:+35737026 | Msa0206440:CDS |
| CTTAAAGCAGCTTTAAGGTG+GGG | 0.570067 | 2_1:+35738498 | Msa0206440:CDS |
| TTGCAAGTTAGTCTAAAGGA+AGG | 0.570603 | 2_1:+35737020 | Msa0206440:CDS |
| TTTGGAGATTTGGTATGTGA+AGG | 0.572640 | 2_1:+35738677 | Msa0206440:three_prime_UTR |
| GGAGATTTGGTATGTGAAGG+TGG | 0.573252 | 2_1:+35738680 | Msa0206440:three_prime_UTR |
| TCACTTATTCACAGGAGGGA+AGG | 0.579079 | 2_1:+35736782 | Msa0206440:CDS |
| TGCAAATCTCCAGTTAGAAG+TGG | 0.579936 | 2_1:-35737002 | None:intergenic |
| TGACGGGATTCGAGTGCGTG+AGG | 0.580615 | 2_1:+35737139 | Msa0206440:CDS |
| GTGGAATGTCAAACAGAATG+TGG | 0.581489 | 2_1:+35737616 | Msa0206440:CDS |
| TCAAAGAAGCCAAAACTACC+TGG | 0.581861 | 2_1:+35735465 | Msa0206440:CDS |
| ATGCCACCTCACTTATTCAC+AGG | 0.582197 | 2_1:+35736774 | Msa0206440:CDS |
| GTCTTGTTGGATCCAAACAC+GGG | 0.582870 | 2_1:+35736837 | Msa0206440:CDS |
| GCAGCAGTATGCATCTGCAA+AGG | 0.584416 | 2_1:+35738047 | Msa0206440:CDS |
| TTTGCTGTTAAAGATCATAG+AGG | 0.584829 | 2_1:+35737176 | Msa0206440:CDS |
| ACCATGCTAAACTGGGTGAC+AGG | 0.585986 | 2_1:+35736099 | Msa0206440:CDS |
| TCTTTGACTAATTCCAAAAG+GGG | 0.586778 | 2_1:+35737976 | Msa0206440:CDS |
| CTTACAGGTAAGTGAAGAAG+TGG | 0.588186 | 2_1:+35736055 | Msa0206440:intron |
| GCATGCTAAGACATGTGTGT+TGG | 0.592550 | 2_1:+35737653 | Msa0206440:CDS |
| GTGGCTCCTGGATATTGTGA+CGG | 0.594325 | 2_1:+35737122 | Msa0206440:CDS |
| GTATGCATCTGCAAAGGGAA+GGG | 0.595195 | 2_1:+35738053 | Msa0206440:CDS |
| AGTATGCATCTGCAAAGGGA+AGG | 0.595436 | 2_1:+35738052 | Msa0206440:CDS |
| ACTGATGAAACTCATAGCAC+TGG | 0.598016 | 2_1:+35737699 | Msa0206440:CDS |
| ACCTGTCACCCAGTTTAGCA+TGG | 0.606805 | 2_1:-35736100 | None:intergenic |
| TTGAATGTTGTTGTGCTGGA+AGG | 0.607235 | 2_1:+35736897 | Msa0206440:CDS |
| AAGACGCAGGAAATCTTCTA+CGG | 0.608096 | 2_1:-35737443 | None:intergenic |
| TAATGTCAAGTGCTCAGGCA+AGG | 0.608603 | 2_1:+35738455 | Msa0206440:CDS |
| GACGGGATTCGAGTGCGTGA+GGG | 0.611142 | 2_1:+35737140 | Msa0206440:CDS |
| TTGAAATACCTAGCTAAACC+AGG | 0.612518 | 2_1:-35735483 | None:intergenic |
| ATCCAGTTCGGATTATCAGA+TGG | 0.612546 | 2_1:+35738131 | Msa0206440:CDS |
| GATGTATCATTCGTTTAGCG+AGG | 0.612785 | 2_1:+35738431 | Msa0206440:CDS |
| GAGATTGGATCGGATAGCAA+AGG | 0.612915 | 2_1:+35737378 | Msa0206440:CDS |
| CCATGAAGTAAAGGAACGTG+AGG | 0.613580 | 2_1:+35736971 | Msa0206440:CDS |
| AAATTGGACCATGCTAAACT+GGG | 0.615323 | 2_1:+35736092 | Msa0206440:CDS |
| TCTAGGCAGAGAAACGGACA+AGG | 0.618669 | 2_1:+35738252 | Msa0206440:CDS |
| TGGAATGTCAAACAGAATGT+GGG | 0.623286 | 2_1:+35737617 | Msa0206440:CDS |
| AGGAGTTCGCAAATGTTGGA+GGG | 0.625466 | 2_1:+35738309 | Msa0206440:CDS |
| TTCCCTCCTGTGAATAAGTG+AGG | 0.629123 | 2_1:-35736780 | None:intergenic |
| CATCACAAATAGCATTATCA+GGG | 0.630702 | 2_1:+35738160 | Msa0206440:CDS |
| AGAAATCTATAAAAGACTAG+AGG | 0.631871 | 2_1:+35738639 | Msa0206440:three_prime_UTR |
| CCACCTCACTTATTCACAGG+AGG | 0.635060 | 2_1:+35736777 | Msa0206440:CDS |
| AACAACATATATGAGCTAAG+AGG | 0.636409 | 2_1:+35737732 | Msa0206440:CDS |
| GCCAAGAATAGAAGCACCGG+GGG | 0.641165 | 2_1:+35736719 | Msa0206440:CDS |
| ACTTCATCATGCAAAGCAGG+TGG | 0.646109 | 2_1:-35737352 | None:intergenic |
| CACCTCACTTATTCACAGGA+GGG | 0.647323 | 2_1:+35736778 | Msa0206440:CDS |
| CATGAAGTAAAGGAACGTGA+GGG | 0.647493 | 2_1:+35736972 | Msa0206440:CDS |
| AATTGTGGAAGCATTGAAGG+TGG | 0.654590 | 2_1:+35735775 | Msa0206440:CDS |
| TTGGATCGGATAGCAAAGGA+TGG | 0.661274 | 2_1:+35737382 | Msa0206440:CDS |
| CCTCCTGTGAATAAGTGAGG+TGG | 0.664327 | 2_1:-35736777 | None:intergenic |
| CTAAACGAATGATACATCTG+AGG | 0.664931 | 2_1:-35738426 | None:intergenic |
| TTGGATCCAACAAGACAACA+TGG | 0.676027 | 2_1:-35736830 | None:intergenic |
| GCTCGCGGACAAGAAGACGC+AGG | 0.689588 | 2_1:-35737456 | None:intergenic |
| ATGAAGTAAAGGAACGTGAG+GGG | 0.703697 | 2_1:+35736973 | Msa0206440:CDS |
| CGCCAAGAATAGAAGCACCG+GGG | 0.710465 | 2_1:+35736718 | Msa0206440:CDS |
| CAGAATGTGGGAGAACACTG+TGG | 0.727384 | 2_1:+35737629 | Msa0206440:CDS |
| CTAGGCAGAGAAACGGACAA+GGG | 0.731036 | 2_1:+35738253 | Msa0206440:CDS |
| TGGAGGGTGATGATATGCAG+AGG | 0.746794 | 2_1:+35738325 | Msa0206440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTATTTATTTTCGAT+AGG | - | chr2_1:35736308-35736327 | None:intergenic | 10.0% |
| !! | AATATCTAAATTTAGAAACT+TGG | - | chr2_1:35735344-35735363 | None:intergenic | 15.0% |
| !! | TTCTAAATTTAGATATTCAT+TGG | + | chr2_1:35735347-35735366 | Msa0206440:five_prime_UTR | 15.0% |
| !! | TCTAAATTTAGATATTCATT+GGG | + | chr2_1:35735348-35735367 | Msa0206440:five_prime_UTR | 15.0% |
| !! | CTTCTAAATTAAAATACTAT+AGG | - | chr2_1:35735539-35735558 | None:intergenic | 15.0% |
| !! | TTTAATAGAATCTCATATAA+TGG | + | chr2_1:35735634-35735653 | Msa0206440:intron | 15.0% |
| !! | AATAATAATTGATATCTGTT+AGG | + | chr2_1:35736318-35736337 | Msa0206440:intron | 15.0% |
| !! | TAATATTTAATCTCATTGTA+TGG | - | chr2_1:35738756-35738775 | None:intergenic | 15.0% |
| !!! | TTTGATATGTATTAGTTTGT+AGG | - | chr2_1:35735178-35735197 | None:intergenic | 20.0% |
| !!! | TTTATCAACTCAAACTTTTA+AGG | + | chr2_1:35735234-35735253 | Msa0206440:five_prime_UTR | 20.0% |
| !! | AACTTAAATCATAATGCTAA+GGG | - | chr2_1:35736251-35736270 | None:intergenic | 20.0% |
| !! | TAACTTAAATCATAATGCTA+AGG | - | chr2_1:35736252-35736271 | None:intergenic | 20.0% |
| !!! | TTAGCATTATGATTTAAGTT+AGG | + | chr2_1:35736251-35736270 | Msa0206440:intron | 20.0% |
| !!! | AAATTGTTTGTTTTTCATAG+CGG | - | chr2_1:35736433-35736452 | None:intergenic | 20.0% |
| !! | ATACTCATGTATATAAATTG+CGG | - | chr2_1:35736634-35736653 | None:intergenic | 20.0% |
| !!! | CAACAATTTTTTCAATATGA+AGG | + | chr2_1:35737271-35737290 | Msa0206440:intron | 20.0% |
| !!! | AGGATGAAAAAAAAATGTTT+TGG | + | chr2_1:35738659-35738678 | Msa0206440:three_prime_UTR | 20.0% |
| !!! | AAAAAAATGTTTTGGAGATT+TGG | + | chr2_1:35738667-35738686 | Msa0206440:three_prime_UTR | 20.0% |
| ! | AGGATGATGACAAAATAATA+TGG | - | chr2_1:35735158-35735177 | None:intergenic | 25.0% |
| ! | AAACAGAAACAAAGTAAGAA+AGG | - | chr2_1:35735217-35735236 | None:intergenic | 25.0% |
| ! | ATTTAGATATTCATTGGGAT+TGG | + | chr2_1:35735353-35735372 | Msa0206440:five_prime_UTR | 25.0% |
| ! | TTTCTCAACTTTATTGTTCT+TGG | - | chr2_1:35735403-35735422 | None:intergenic | 25.0% |
| ! | TTCTTTCTACTAATGTAATG+TGG | + | chr2_1:35735568-35735587 | Msa0206440:intron | 25.0% |
| ! | TAAGAAATGTTCATCTAAGT+TGG | + | chr2_1:35735610-35735629 | Msa0206440:intron | 25.0% |
| ! | TTAAACTGCTAACACAATAT+AGG | - | chr2_1:35735867-35735886 | None:intergenic | 25.0% |
| ! | TTGTGAAATATTCAAGCAAA+GGG | - | chr2_1:35735933-35735952 | None:intergenic | 25.0% |
| ! | TTTGTGAAATATTCAAGCAA+AGG | - | chr2_1:35735934-35735953 | None:intergenic | 25.0% |
| ! | TGCTTGAATATTTCACAAAA+AGG | + | chr2_1:35735935-35735954 | Msa0206440:intron | 25.0% |
| !! | CATTATGATTTAAGTTAGGA+TGG | + | chr2_1:35736255-35736274 | Msa0206440:intron | 25.0% |
| !!! | TGGAATCTGTAGTTTTTTTT+AGG | - | chr2_1:35736404-35736423 | None:intergenic | 25.0% |
| ! | CAACTAAAATGTATCAAAGA+CGG | - | chr2_1:35736684-35736703 | None:intergenic | 25.0% |
| !!! | CTCTAATCATATTTTTTCGA+AGG | + | chr2_1:35737542-35737561 | Msa0206440:intron | 25.0% |
| !! | TGAAAAAGGCATATGATAAT+TGG | + | chr2_1:35737917-35737936 | Msa0206440:CDS | 25.0% |
| !! | GAAAAAGGCATATGATAATT+GGG | + | chr2_1:35737918-35737937 | Msa0206440:CDS | 25.0% |
| ! | ATTCTTTGACTAATTCCAAA+AGG | + | chr2_1:35737974-35737993 | Msa0206440:CDS | 25.0% |
| ! | TTCTTTGACTAATTCCAAAA+GGG | + | chr2_1:35737975-35737994 | Msa0206440:CDS | 25.0% |
| !!! | TTGCAAATGTTGATTTTGTT+CGG | - | chr2_1:35738094-35738113 | None:intergenic | 25.0% |
| ! | TAATAATTACCTCCAATTTC+AGG | - | chr2_1:35738219-35738238 | None:intergenic | 25.0% |
| ! | ATTGGAGGTAATTATTATCA+TGG | + | chr2_1:35738222-35738241 | Msa0206440:CDS | 25.0% |
| ! | TTACTTAAGACCATTAATGA+AGG | + | chr2_1:35738348-35738367 | Msa0206440:CDS | 25.0% |
| ! | AAAATTAGCTCCTTCATTAA+TGG | - | chr2_1:35738361-35738380 | None:intergenic | 25.0% |
| !! | ATTAATGAAGGAGCTAATTT+TGG | + | chr2_1:35738360-35738379 | Msa0206440:CDS | 25.0% |
| ! | AGAAATCTATAAAAGACTAG+AGG | + | chr2_1:35738639-35738658 | Msa0206440:three_prime_UTR | 25.0% |
| CAGAAGCAGAAAAAAAATCT+TGG | - | chr2_1:35735271-35735290 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTTCTGCTTCTG+TGG | + | chr2_1:35735271-35735290 | Msa0206440:five_prime_UTR | 30.0% |
| !!! | GATTTTTTTTCTGCTTCTGT+GGG | + | chr2_1:35735272-35735291 | Msa0206440:five_prime_UTR | 30.0% |
| ACTTGGTCTATTCTTAAGAT+AGG | - | chr2_1:35735327-35735346 | None:intergenic | 30.0% | |
| ATATTCATTGGGATTGGATA+AGG | + | chr2_1:35735359-35735378 | Msa0206440:five_prime_UTR | 30.0% | |
| !! | ATTGGATAAGGTTCTAGAAA+TGG | + | chr2_1:35735371-35735390 | Msa0206440:exon | 30.0% |
| AGTTGAGAAAAGAAGTTATG+AGG | + | chr2_1:35735413-35735432 | Msa0206440:CDS | 30.0% | |
| GGAATCTTGTATATAAGTCA+AGG | + | chr2_1:35735655-35735674 | Msa0206440:intron | 30.0% | |
| TATATAAGTCAAGGTAGCAT+TGG | + | chr2_1:35735664-35735683 | Msa0206440:intron | 30.0% | |
| TCAAATGTACAGTGTAATTG+TGG | + | chr2_1:35735760-35735779 | Msa0206440:intron | 30.0% | |
| GGTTATCAAATCAAAGAACA+TGG | + | chr2_1:35735956-35735975 | Msa0206440:intron | 30.0% | |
| ! | AGATTTGCAAGTTAGTCTAA+AGG | + | chr2_1:35737016-35737035 | Msa0206440:CDS | 30.0% |
| TCTTATCCAGCTAGAATTAT+CGG | - | chr2_1:35737075-35737094 | None:intergenic | 30.0% | |
| TAACACCAAGTCTAAACTTT+CGG | - | chr2_1:35737100-35737119 | None:intergenic | 30.0% | |
| !! | AAAGTTTAGACTTGGTGTTA+AGG | + | chr2_1:35737100-35737119 | Msa0206440:CDS | 30.0% |
| TCTATGATCTTTAACAGCAA+AGG | - | chr2_1:35737177-35737196 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTAAAGATCATAG+AGG | + | chr2_1:35737176-35737195 | Msa0206440:CDS | 30.0% |
| ATATAGTAGAGTAAGAACGA+AGG | + | chr2_1:35737248-35737267 | Msa0206440:intron | 30.0% | |
| TCAATATGAAGGCTATATTG+AGG | + | chr2_1:35737282-35737301 | Msa0206440:intron | 30.0% | |
| CTTACACTTCTTAATTTCTG+TGG | - | chr2_1:35737481-35737500 | None:intergenic | 30.0% | |
| AACAACATATATGAGCTAAG+AGG | + | chr2_1:35737732-35737751 | Msa0206440:CDS | 30.0% | |
| ! | GTGATTCTAAAGAAAAGAAC+TGG | - | chr2_1:35737773-35737792 | None:intergenic | 30.0% |
| ATCACTCACTTCAAATCAAA+AGG | + | chr2_1:35737788-35737807 | Msa0206440:CDS | 30.0% | |
| TCTTTGACTAATTCCAAAAG+GGG | + | chr2_1:35737976-35737995 | Msa0206440:CDS | 30.0% | |
| ACATCACAAATAGCATTATC+AGG | + | chr2_1:35738159-35738178 | Msa0206440:CDS | 30.0% | |
| CATCACAAATAGCATTATCA+GGG | + | chr2_1:35738160-35738179 | Msa0206440:CDS | 30.0% | |
| ACCATGAATTACAATATGTC+AGG | + | chr2_1:35738183-35738202 | Msa0206440:CDS | 30.0% | |
| TCCTGACATATTGTAATTCA+TGG | - | chr2_1:35738187-35738206 | None:intergenic | 30.0% | |
| GGAGATAATAATCCTGAAAT+TGG | + | chr2_1:35738204-35738223 | Msa0206440:CDS | 30.0% | |
| GATAATAATCCTGAAATTGG+AGG | + | chr2_1:35738207-35738226 | Msa0206440:CDS | 30.0% | |
| GTAATTATTATCATGGAGAC+TGG | + | chr2_1:35738229-35738248 | Msa0206440:CDS | 30.0% | |
| TTAAGCTTAAAGCAGCTTTA+AGG | + | chr2_1:35738493-35738512 | Msa0206440:CDS | 30.0% | |
| TGAGTTCAAATGCTTGAAAT+CGG | + | chr2_1:35738576-35738595 | Msa0206440:exon | 30.0% | |
| GAAAAGAAGTTATGAGGATG+AGG | + | chr2_1:35735419-35735438 | Msa0206440:CDS | 35.0% | |
| TTGAAATACCTAGCTAAACC+AGG | - | chr2_1:35735486-35735505 | None:intergenic | 35.0% | |
| !! | TGTAATTGTGGAAGCATTGA+AGG | + | chr2_1:35735772-35735791 | Msa0206440:CDS | 35.0% |
| !! | CTCACAATTTTTCTGAGAAG+AGG | - | chr2_1:35735833-35735852 | None:intergenic | 35.0% |
| GGGTCTATTATTGCATAGAA+CGG | - | chr2_1:35735913-35735932 | None:intergenic | 35.0% | |
| AGTTAATCCTTCTAATTCCG+TGG | + | chr2_1:35736032-35736051 | Msa0206440:intron | 35.0% | |
| AAATTGGACCATGCTAAACT+GGG | + | chr2_1:35736092-35736111 | Msa0206440:CDS | 35.0% | |
| TCCCTAGTCAGATTAGAATT+CGG | + | chr2_1:35736127-35736146 | Msa0206440:intron | 35.0% | |
| TCCGAATTCTAATCTGACTA+GGG | - | chr2_1:35736131-35736150 | None:intergenic | 35.0% | |
| TTCCGAATTCTAATCTGACT+AGG | - | chr2_1:35736132-35736151 | None:intergenic | 35.0% | |
| ATAATGCGTACATTCATCCA+CGG | - | chr2_1:35736355-35736374 | None:intergenic | 35.0% | |
| TGTGTTGAAAACTTGACAGA+AGG | - | chr2_1:35736492-35736511 | None:intergenic | 35.0% | |
| TCTCAACCACCTAAAATTTC+AGG | + | chr2_1:35736656-35736675 | Msa0206440:intron | 35.0% | |
| ! | AAGACGGATCCTGAAATTTT+AGG | - | chr2_1:35736668-35736687 | None:intergenic | 35.0% |
| !!! | TGATACATTTTAGTTGTGCC+AGG | + | chr2_1:35736688-35736707 | Msa0206440:intron | 35.0% |
| !! | GTGGCATTCTTGTTCTAAAA+TGG | - | chr2_1:35736761-35736780 | None:intergenic | 35.0% |
| ! | TTCAACTTAGCAACTGATTC+TGG | - | chr2_1:35736882-35736901 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGTTGTTGTGC+TGG | + | chr2_1:35736893-35736912 | Msa0206440:CDS | 35.0% |
| !! | ATGAGGAAGTTGATGATGAT+TGG | + | chr2_1:35736928-35736947 | Msa0206440:CDS | 35.0% |
| ! | CTTTGAAAGCCATGAAGTAA+AGG | + | chr2_1:35736962-35736981 | Msa0206440:CDS | 35.0% |
| ! | TTGCAAGTTAGTCTAAAGGA+AGG | + | chr2_1:35737020-35737039 | Msa0206440:CDS | 35.0% |
| ATGAAGTTTGGAGATTGGAT+CGG | + | chr2_1:35737368-35737387 | Msa0206440:CDS | 35.0% | |
| ATGATTAGAGAAGAGTGATG+TGG | - | chr2_1:35737532-35737551 | None:intergenic | 35.0% | |
| AAGTACCTGTATTGAAAAGG+TGG | - | chr2_1:35737592-35737611 | None:intergenic | 35.0% | |
| ! | ACCTTTTCAATACAGGTACT+TGG | + | chr2_1:35737591-35737610 | Msa0206440:intron | 35.0% |
| ACCAAGTACCTGTATTGAAA+AGG | - | chr2_1:35737595-35737614 | None:intergenic | 35.0% | |
| TGGAATGTCAAACAGAATGT+GGG | + | chr2_1:35737617-35737636 | Msa0206440:CDS | 35.0% | |
| TGTAGATTCCTTGGTGAAAA+AGG | + | chr2_1:35737903-35737922 | Msa0206440:CDS | 35.0% | |
| !! | ATCATATGCCTTTTTCACCA+AGG | - | chr2_1:35737914-35737933 | None:intergenic | 35.0% |
| GACCAAGTCATAGAATATGA+TGG | + | chr2_1:35737940-35737959 | Msa0206440:CDS | 35.0% | |
| CTCCATCATATTCTATGACT+TGG | - | chr2_1:35737945-35737964 | None:intergenic | 35.0% | |
| GAATAACTACTCATCCAGTT+CGG | + | chr2_1:35738119-35738138 | Msa0206440:CDS | 35.0% | |
| CTAAACGAATGATACATCTG+AGG | - | chr2_1:35738429-35738448 | None:intergenic | 35.0% | |
| ! | TTTGGAGATTTGGTATGTGA+AGG | + | chr2_1:35738677-35738696 | Msa0206440:three_prime_UTR | 35.0% |
| GCTTCTTTGACTGAGTAAGA+TGG | - | chr2_1:35735455-35735474 | None:intergenic | 40.0% | |
| TCAAAGAAGCCAAAACTACC+TGG | + | chr2_1:35735465-35735484 | Msa0206440:CDS | 40.0% | |
| ! | CTAGCTAAACCAGGTAGTTT+TGG | - | chr2_1:35735477-35735496 | None:intergenic | 40.0% |
| CAAAACTACCTGGTTTAGCT+AGG | + | chr2_1:35735475-35735494 | Msa0206440:CDS | 40.0% | |
| !! | AATTGTGGAAGCATTGAAGG+TGG | + | chr2_1:35735775-35735794 | Msa0206440:CDS | 40.0% |
| CTTACAGGTAAGTGAAGAAG+TGG | + | chr2_1:35736055-35736074 | Msa0206440:intron | 40.0% | |
| GAAATTGGACCATGCTAAAC+TGG | + | chr2_1:35736091-35736110 | Msa0206440:CDS | 40.0% | |
| TAATGCGTACATTCATCCAC+GGG | - | chr2_1:35736354-35736373 | None:intergenic | 40.0% | |
| ! | GTTTTTCATAGCGGCTAAAC+TGG | - | chr2_1:35736424-35736443 | None:intergenic | 40.0% |
| ! | ACGGATCCTGAAATTTTAGG+TGG | - | chr2_1:35736665-35736684 | None:intergenic | 40.0% |
| AGTCATCCATGTTGTCTTGT+TGG | + | chr2_1:35736824-35736843 | Msa0206440:CDS | 40.0% | |
| TTGGATCCAACAAGACAACA+TGG | - | chr2_1:35736833-35736852 | None:intergenic | 40.0% | |
| ! | TGTCTTGTTGGATCCAAACA+CGG | + | chr2_1:35736836-35736855 | Msa0206440:CDS | 40.0% |
| TGAACAACATTTCCCGTGTT+TGG | - | chr2_1:35736852-35736871 | None:intergenic | 40.0% | |
| ACGGGAAATGTTGTTCAAGT+TGG | + | chr2_1:35736855-35736874 | Msa0206440:CDS | 40.0% | |
| TTGAATGTTGTTGTGCTGGA+AGG | + | chr2_1:35736897-35736916 | Msa0206440:CDS | 40.0% | |
| !! | GCTGGAAGGTGATTTTAATG+AGG | + | chr2_1:35736911-35736930 | Msa0206440:CDS | 40.0% |
| CATGAAGTAAAGGAACGTGA+GGG | + | chr2_1:35736972-35736991 | Msa0206440:CDS | 40.0% | |
| ATGAAGTAAAGGAACGTGAG+GGG | + | chr2_1:35736973-35736992 | Msa0206440:CDS | 40.0% | |
| TGCAAATCTCCAGTTAGAAG+TGG | - | chr2_1:35737005-35737024 | None:intergenic | 40.0% | |
| ! | GTTAGTCTAAAGGAAGGAGT+AGG | + | chr2_1:35737026-35737045 | Msa0206440:CDS | 40.0% |
| AAGGAAGGAGTAGGAACATT+AGG | + | chr2_1:35737035-35737054 | Msa0206440:CDS | 40.0% | |
| CTTTCACCGATAATTCTAGC+TGG | + | chr2_1:35737066-35737085 | Msa0206440:CDS | 40.0% | |
| AGAAGCCGAAAGTTTAGACT+TGG | + | chr2_1:35737092-35737111 | Msa0206440:CDS | 40.0% | |
| !! | GTTTAGACTTGGTGTTAAGG+TGG | + | chr2_1:35737103-35737122 | Msa0206440:CDS | 40.0% |
| CAAACTTCATCATGCAAAGC+AGG | - | chr2_1:35737358-35737377 | None:intergenic | 40.0% | |
| CTGCTTTGCATGATGAAGTT+TGG | + | chr2_1:35737356-35737375 | Msa0206440:CDS | 40.0% | |
| GCATGATGAAGTTTGGAGAT+TGG | + | chr2_1:35737363-35737382 | Msa0206440:CDS | 40.0% | |
| AAGACGCAGGAAATCTTCTA+CGG | - | chr2_1:35737446-35737465 | None:intergenic | 40.0% | |
| TTCTTAATTTCTGTGGCTCG+CGG | - | chr2_1:35737474-35737493 | None:intergenic | 40.0% | |
| TTAGAGAAGAGTGATGTGGA+TGG | - | chr2_1:35737528-35737547 | None:intergenic | 40.0% | |
| ! | GTTTGCCACCTTTTCAATAC+AGG | + | chr2_1:35737584-35737603 | Msa0206440:intron | 40.0% |
| TCAATACAGGTACTTGGTAG+TGG | + | chr2_1:35737597-35737616 | Msa0206440:intron | 40.0% | |
| GTGGAATGTCAAACAGAATG+TGG | + | chr2_1:35737616-35737635 | Msa0206440:CDS | 40.0% | |
| CATGCTAAGACATGTGTGTT+GGG | + | chr2_1:35737654-35737673 | Msa0206440:CDS | 40.0% | |
| ACTGATGAAACTCATAGCAC+TGG | + | chr2_1:35737699-35737718 | Msa0206440:CDS | 40.0% | |
| !!! | TACTGATTTCGATCCCCTTT+TGG | - | chr2_1:35737992-35738011 | None:intergenic | 40.0% |
| ATCCAGTTCGGATTATCAGA+TGG | + | chr2_1:35738131-35738150 | Msa0206440:CDS | 40.0% | |
| TACCATCTGATAATCCGAAC+TGG | - | chr2_1:35738136-35738155 | None:intergenic | 40.0% | |
| AGTTCGGATTATCAGATGGT+AGG | + | chr2_1:35738135-35738154 | Msa0206440:CDS | 40.0% | |
| GTTCGGATTATCAGATGGTA+GGG | + | chr2_1:35738136-35738155 | Msa0206440:CDS | 40.0% | |
| !! | ATTATCATGGAGACTGGTCT+AGG | + | chr2_1:35738235-35738254 | Msa0206440:CDS | 40.0% |
| ACATTGTCGCAGAAGAACTT+CGG | + | chr2_1:35738283-35738302 | Msa0206440:CDS | 40.0% | |
| GATGTATCATTCGTTTAGCG+AGG | + | chr2_1:35738431-35738450 | Msa0206440:CDS | 40.0% | |
| !! | AGCTTAAAGCAGCTTTAAGG+TGG | + | chr2_1:35738496-35738515 | Msa0206440:CDS | 40.0% |
| !! | GCTTAAAGCAGCTTTAAGGT+GGG | + | chr2_1:35738497-35738516 | Msa0206440:CDS | 40.0% |
| !! | CTTAAAGCAGCTTTAAGGTG+GGG | + | chr2_1:35738498-35738517 | Msa0206440:CDS | 40.0% |
| TTGTTCAATACTGCAGTTGG+TGG | - | chr2_1:35738732-35738751 | None:intergenic | 40.0% | |
| ! | GGTTTGTTCAATACTGCAGT+TGG | - | chr2_1:35738735-35738754 | None:intergenic | 40.0% |
| GCAAAGACTCTGCTCATCTT+TGG | + | chr2_1:35735805-35735824 | Msa0206440:CDS | 45.0% | |
| CTGTAAGCCACGGAATTAGA+AGG | - | chr2_1:35736042-35736061 | None:intergenic | 45.0% | |
| CTTCTAATTCCGTGGCTTAC+AGG | + | chr2_1:35736040-35736059 | Msa0206440:intron | 45.0% | |
| CTTCACTTACCTGTAAGCCA+CGG | - | chr2_1:35736052-35736071 | None:intergenic | 45.0% | |
| ACAGAAGGACTAACGTGTCT+CGG | - | chr2_1:35736477-35736496 | None:intergenic | 45.0% | |
| ACGTTCTTCAGTGTAACACG+CGG | - | chr2_1:35736559-35736578 | None:intergenic | 45.0% | |
| ATGCCACCTCACTTATTCAC+AGG | + | chr2_1:35736774-35736793 | Msa0206440:CDS | 45.0% | |
| CACCTCACTTATTCACAGGA+GGG | + | chr2_1:35736778-35736797 | Msa0206440:CDS | 45.0% | |
| TTCCCTCCTGTGAATAAGTG+AGG | - | chr2_1:35736783-35736802 | None:intergenic | 45.0% | |
| TCACTTATTCACAGGAGGGA+AGG | + | chr2_1:35736782-35736801 | Msa0206440:CDS | 45.0% | |
| ! | GTCTTGTTGGATCCAAACAC+GGG | + | chr2_1:35736837-35736856 | Msa0206440:CDS | 45.0% |
| CCTCACGTTCCTTTACTTCA+TGG | - | chr2_1:35736974-35736993 | None:intergenic | 45.0% | |
| CCATGAAGTAAAGGAACGTG+AGG | + | chr2_1:35736971-35736990 | Msa0206440:CDS | 45.0% | |
| TAAAGGAACGTGAGGGGAAA+AGG | + | chr2_1:35736979-35736998 | Msa0206440:CDS | 45.0% | |
| ACTTCATCATGCAAAGCAGG+TGG | - | chr2_1:35737355-35737374 | None:intergenic | 45.0% | |
| GAGATTGGATCGGATAGCAA+AGG | + | chr2_1:35737378-35737397 | Msa0206440:CDS | 45.0% | |
| TTGGATCGGATAGCAAAGGA+TGG | + | chr2_1:35737382-35737401 | Msa0206440:CDS | 45.0% | |
| GCATGCTAAGACATGTGTGT+TGG | + | chr2_1:35737653-35737672 | Msa0206440:CDS | 45.0% | |
| CTAAGAGGTCTCATTGCTGA+TGG | + | chr2_1:35737747-35737766 | Msa0206440:CDS | 45.0% | |
| GCAGATGTCTGTAGATTCCT+TGG | + | chr2_1:35737894-35737913 | Msa0206440:intron | 45.0% | |
| CAGCAGTATGCATCTGCAAA+GGG | + | chr2_1:35738048-35738067 | Msa0206440:CDS | 45.0% | |
| AGTATGCATCTGCAAAGGGA+AGG | + | chr2_1:35738052-35738071 | Msa0206440:CDS | 45.0% | |
| GTATGCATCTGCAAAGGGAA+GGG | + | chr2_1:35738053-35738072 | Msa0206440:CDS | 45.0% | |
| GCTTAGGAGTTCGCAAATGT+TGG | + | chr2_1:35738305-35738324 | Msa0206440:CDS | 45.0% | |
| TAGGAGTTCGCAAATGTTGG+AGG | + | chr2_1:35738308-35738327 | Msa0206440:CDS | 45.0% | |
| AGGAGTTCGCAAATGTTGGA+GGG | + | chr2_1:35738309-35738328 | Msa0206440:CDS | 45.0% | |
| GAGGATAATGTCAAGTGCTC+AGG | + | chr2_1:35738450-35738469 | Msa0206440:CDS | 45.0% | |
| TAATGTCAAGTGCTCAGGCA+AGG | + | chr2_1:35738455-35738474 | Msa0206440:CDS | 45.0% | |
| ! | GGAGATTTGGTATGTGAAGG+TGG | + | chr2_1:35738680-35738699 | Msa0206440:three_prime_UTR | 45.0% |
| TGCTTCTGTGGGAAGCTTCT+TGG | + | chr2_1:35735283-35735302 | Msa0206440:five_prime_UTR | 50.0% | |
| GCTTCTGTGGGAAGCTTCTT+GGG | + | chr2_1:35735284-35735303 | Msa0206440:five_prime_UTR | 50.0% | |
| CTTCTGTGGGAAGCTTCTTG+GGG | + | chr2_1:35735285-35735304 | Msa0206440:five_prime_UTR | 50.0% | |
| TGAAGAAGTGGAGCGTGCTT+TGG | + | chr2_1:35736067-35736086 | Msa0206440:CDS | 50.0% | |
| ACCATGCTAAACTGGGTGAC+AGG | + | chr2_1:35736099-35736118 | Msa0206440:CDS | 50.0% | |
| ACCTGTCACCCAGTTTAGCA+TGG | - | chr2_1:35736103-35736122 | None:intergenic | 50.0% | |
| TATTCTTGGCGGTGAAGACC+TGG | - | chr2_1:35736709-35736728 | None:intergenic | 50.0% | |
| ! | ACCGCCAAGAATAGAAGCAC+CGG | + | chr2_1:35736716-35736735 | Msa0206440:CDS | 50.0% |
| ! | AGCTGCAGATTCTTTTCCCC+CGG | - | chr2_1:35736738-35736757 | None:intergenic | 50.0% |
| CCTCCTGTGAATAAGTGAGG+TGG | - | chr2_1:35736780-35736799 | None:intergenic | 50.0% | |
| CCACCTCACTTATTCACAGG+AGG | + | chr2_1:35736777-35736796 | Msa0206440:CDS | 50.0% | |
| ATTCACAGGAGGGAAGGTTG+AGG | + | chr2_1:35736788-35736807 | Msa0206440:CDS | 50.0% | |
| TTCACAGGAGGGAAGGTTGA+GGG | + | chr2_1:35736789-35736808 | Msa0206440:CDS | 50.0% | |
| GGGAAAAGGCCACTTCTAAC+TGG | + | chr2_1:35736993-35737012 | Msa0206440:CDS | 50.0% | |
| GTGGCTCCTGGATATTGTGA+CGG | + | chr2_1:35737122-35737141 | Msa0206440:CDS | 50.0% | |
| TGGCTCCTGGATATTGTGAC+GGG | + | chr2_1:35737123-35737142 | Msa0206440:CDS | 50.0% | |
| CGAATCCCGTCACAATATCC+AGG | - | chr2_1:35737131-35737150 | None:intergenic | 50.0% | |
| CAGAATGTGGGAGAACACTG+TGG | + | chr2_1:35737629-35737648 | Msa0206440:CDS | 50.0% | |
| CAGATGCATACTGCTGCTCT+TGG | - | chr2_1:35738044-35738063 | None:intergenic | 50.0% | |
| GCAGCAGTATGCATCTGCAA+AGG | + | chr2_1:35738047-35738066 | Msa0206440:CDS | 50.0% | |
| !! | GACTGGTCTAGGCAGAGAAA+CGG | + | chr2_1:35738246-35738265 | Msa0206440:CDS | 50.0% |
| TCTAGGCAGAGAAACGGACA+AGG | + | chr2_1:35738252-35738271 | Msa0206440:CDS | 50.0% | |
| CTAGGCAGAGAAACGGACAA+GGG | + | chr2_1:35738253-35738272 | Msa0206440:CDS | 50.0% | |
| TCGCAGAAGAACTTCGGCTT+AGG | + | chr2_1:35738289-35738308 | Msa0206440:CDS | 50.0% | |
| TGGAGGGTGATGATATGCAG+AGG | + | chr2_1:35738325-35738344 | Msa0206440:CDS | 50.0% | |
| GGAGCGTGCTTTGGCGAAAT+TGG | + | chr2_1:35736076-35736095 | Msa0206440:CDS | 55.0% | |
| CCCGGTGCTTCTATTCTTGG+CGG | - | chr2_1:35736720-35736739 | None:intergenic | 55.0% | |
| !! | CCGCCAAGAATAGAAGCACC+GGG | + | chr2_1:35736717-35736736 | Msa0206440:CDS | 55.0% |
| !! | CGCCAAGAATAGAAGCACCG+GGG | + | chr2_1:35736718-35736737 | Msa0206440:CDS | 55.0% |
| !! | GCCAAGAATAGAAGCACCGG+GGG | + | chr2_1:35736719-35736738 | Msa0206440:CDS | 55.0% |
| TCCCCCGGTGCTTCTATTCT+TGG | - | chr2_1:35736723-35736742 | None:intergenic | 55.0% | |
| !! | CTTGGTGTTAAGGTGGCTCC+TGG | + | chr2_1:35737110-35737129 | Msa0206440:CDS | 55.0% |
| TGCTCAGGCAAGGCTGTTGT+TGG | + | chr2_1:35738465-35738484 | Msa0206440:CDS | 55.0% | |
| GCTCAGGCAAGGCTGTTGTT+GGG | + | chr2_1:35738466-35738485 | Msa0206440:CDS | 55.0% | |
| ! | GTTAGGCATGATGACGCCCG+TGG | + | chr2_1:35736335-35736354 | Msa0206440:intron | 60.0% |
| GGGAAGGTTGAGGGAGAGCA+AGG | + | chr2_1:35736798-35736817 | Msa0206440:CDS | 60.0% | |
| TGACGGGATTCGAGTGCGTG+AGG | + | chr2_1:35737139-35737158 | Msa0206440:CDS | 60.0% | |
| GACGGGATTCGAGTGCGTGA+GGG | + | chr2_1:35737140-35737159 | Msa0206440:CDS | 60.0% | |
| CAGGCAAGGCTGTTGTTGGG+TGG | + | chr2_1:35738469-35738488 | Msa0206440:CDS | 60.0% | |
| GCTCGCGGACAAGAAGACGC+AGG | - | chr2_1:35737459-35737478 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 35735125 | 35738900 | 35735125 | ID=Msa0206440;Name=Msa0206440 |
| chr2_1 | mRNA | 35735125 | 35738900 | 35735125 | ID=Msa0206440-mRNA-1;Parent=Msa0206440;Name=Msa0206440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=265|0.83|0.85|1|1|1|7|322|607 |
| chr2_1 | exon | 35735125 | 35735496 | 35735125 | ID=Msa0206440-mRNA-1:exon:11737;Parent=Msa0206440-mRNA-1 |
| chr2_1 | exon | 35735772 | 35735847 | 35735772 | ID=Msa0206440-mRNA-1:exon:11738;Parent=Msa0206440-mRNA-1 |
| chr2_1 | exon | 35736062 | 35736120 | 35736062 | ID=Msa0206440-mRNA-1:exon:11739;Parent=Msa0206440-mRNA-1 |
| chr2_1 | exon | 35736710 | 35737203 | 35736710 | ID=Msa0206440-mRNA-1:exon:11740;Parent=Msa0206440-mRNA-1 |
| chr2_1 | exon | 35737293 | 35737495 | 35737293 | ID=Msa0206440-mRNA-1:exon:11741;Parent=Msa0206440-mRNA-1 |
| chr2_1 | exon | 35737606 | 35737809 | 35737606 | ID=Msa0206440-mRNA-1:exon:11742;Parent=Msa0206440-mRNA-1 |
| chr2_1 | exon | 35737898 | 35738900 | 35737898 | ID=Msa0206440-mRNA-1:exon:11743;Parent=Msa0206440-mRNA-1 |
| chr2_1 | five_prime_UTR | 35735125 | 35735389 | 35735125 | ID=Msa0206440-mRNA-1:five_prime_utr;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35735390 | 35735496 | 35735390 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35735772 | 35735847 | 35735772 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35736062 | 35736120 | 35736062 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35736710 | 35737203 | 35736710 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35737293 | 35737495 | 35737293 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35737606 | 35737809 | 35737606 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | CDS | 35737898 | 35738578 | 35737898 | ID=Msa0206440-mRNA-1:cds;Parent=Msa0206440-mRNA-1 |
| chr2_1 | three_prime_UTR | 35738579 | 35738900 | 35738579 | ID=Msa0206440-mRNA-1:three_prime_utr;Parent=Msa0206440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
