Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249360 | XP_039686491.1 | 98.353 | 607 | 10 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249360 | sp|F4IPM3|CB60E_ARATH | 59.524 | 630 | 193 | 11 | 9 | 607 | 1 | 599 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249360 | A0A072VIC7 | 95.881 | 607 | 11 | 1 | 1 | 607 | 1 | 593 | 0.0 | 1203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010910 | Msa0249360 | 0.829717 | 4.403817e-55 | -8.615850e-47 |
| Msa0206440 | Msa0249360 | 0.931826 | 2.124674e-94 | -8.615850e-47 |
| Msa0249360 | Msa0258040 | 0.803025 | 4.244284e-49 | -8.615850e-47 |
| Msa0249360 | Msa0266220 | 0.806445 | 8.198392e-50 | -8.615850e-47 |
| Msa0249360 | Msa0287680 | 0.815674 | 8.192650e-52 | -8.615850e-47 |
| Msa0249360 | Msa0287850 | 0.980111 | 1.806168e-149 | -8.615850e-47 |
| Msa0249360 | Msa0400420 | 0.803893 | 2.805477e-49 | -8.615850e-47 |
| Msa0249360 | Msa0441600 | 0.820527 | 6.545593e-53 | -8.615850e-47 |
| Msa0249360 | Msa0489120 | 0.840966 | 6.325132e-58 | -8.615850e-47 |
| Msa0249360 | Msa0529670 | 0.846298 | 2.371079e-59 | -8.615850e-47 |
| Msa0249360 | Msa0572750 | 0.807486 | 4.937971e-50 | -8.615850e-47 |
| Msa0249360 | Msa1078550 | 0.821851 | 3.240217e-53 | -8.615850e-47 |
| Msa0249360 | Msa1078560 | 0.809421 | 1.908159e-50 | -8.615850e-47 |
| Msa0249360 | Msa1078660 | 0.833133 | 6.352727e-56 | -8.615850e-47 |
| Msa0249360 | Msa1089960 | 0.827100 | 1.884924e-54 | -8.615850e-47 |
| Msa0249360 | Msa1169380 | 0.826874 | 2.134482e-54 | -8.615850e-47 |
| Msa0249360 | Msa1169460 | 0.819910 | 9.059307e-53 | -8.615850e-47 |
| Msa0249360 | Msa1350700 | 0.809699 | 1.663435e-50 | -8.615850e-47 |
| Msa0249360 | Msa1352590 | 0.805765 | 1.139932e-49 | -8.615850e-47 |
| Msa0249360 | Msa1360260 | 0.814115 | 1.815437e-51 | -8.615850e-47 |
| Msa0249360 | Msa1373070 | 0.826346 | 2.853593e-54 | -8.615850e-47 |
| Msa0249360 | Msa1414500 | 0.818917 | 1.526298e-52 | -8.615850e-47 |
| Msa0249360 | Msa1442940 | 0.905599 | 3.622372e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249360 | MtrunA17_Chr2g0304831 | 95.881 | 607 | 11 | 1 | 1 | 607 | 1 | 593 | 0.0 | 1203 |
| Msa0249360 | MtrunA17_Chr4g0048161 | 52.739 | 639 | 240 | 12 | 8 | 607 | 12 | 627 | 0.0 | 618 |
| Msa0249360 | MtrunA17_Chr2g0281171 | 52.308 | 650 | 244 | 11 | 1 | 607 | 6 | 632 | 0.0 | 606 |
| Msa0249360 | MtrunA17_Chr4g0072691 | 52.006 | 623 | 230 | 10 | 34 | 607 | 3 | 605 | 0.0 | 601 |
| Msa0249360 | MtrunA17_Chr8g0391221 | 42.432 | 403 | 208 | 7 | 11 | 407 | 4 | 388 | 2.58e-99 | 310 |
| Msa0249360 | MtrunA17_Chr4g0059411 | 44.562 | 377 | 190 | 5 | 21 | 396 | 10 | 368 | 5.35e-98 | 309 |
| Msa0249360 | MtrunA17_Chr6g0484131 | 39.627 | 429 | 227 | 7 | 15 | 429 | 13 | 423 | 7.16e-98 | 307 |
| Msa0249360 | MtrunA17_Chr8g0391211 | 43.501 | 377 | 192 | 6 | 34 | 407 | 101 | 459 | 2.68e-97 | 308 |
| Msa0249360 | MtrunA17_Chr6g0484111 | 39.907 | 431 | 223 | 8 | 15 | 429 | 13 | 423 | 3.69e-97 | 305 |
| Msa0249360 | MtrunA17_Chr6g0484121 | 39.627 | 429 | 227 | 7 | 15 | 429 | 13 | 423 | 7.83e-96 | 302 |
| Msa0249360 | MtrunA17_Chr7g0271691 | 32.439 | 410 | 234 | 12 | 10 | 410 | 4 | 379 | 5.17e-54 | 192 |
| Msa0249360 | MtrunA17_Chr7g0271671 | 31.232 | 349 | 217 | 7 | 54 | 398 | 60 | 389 | 3.16e-40 | 154 |
| Msa0249360 | MtrunA17_Chr7g0271681 | 32.803 | 314 | 184 | 8 | 91 | 396 | 6 | 300 | 1.08e-39 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249360 | AT2G24300.3 | 59.498 | 637 | 194 | 11 | 1 | 607 | 1 | 603 | 0.0 | 717 |
| Msa0249360 | AT2G24300.2 | 59.524 | 630 | 193 | 11 | 9 | 607 | 1 | 599 | 0.0 | 714 |
| Msa0249360 | AT4G31000.1 | 58.785 | 609 | 202 | 8 | 1 | 607 | 1 | 562 | 0.0 | 682 |
| Msa0249360 | AT2G24300.1 | 59.201 | 576 | 174 | 10 | 62 | 607 | 8 | 552 | 0.0 | 649 |
| Msa0249360 | AT2G18750.3 | 52.866 | 628 | 251 | 11 | 6 | 607 | 10 | 618 | 0.0 | 597 |
| Msa0249360 | AT2G18750.2 | 52.866 | 628 | 251 | 11 | 6 | 607 | 10 | 618 | 0.0 | 597 |
| Msa0249360 | AT2G18750.1 | 52.866 | 628 | 251 | 11 | 6 | 607 | 10 | 618 | 0.0 | 597 |
| Msa0249360 | AT4G31000.2 | 52.778 | 612 | 213 | 9 | 1 | 607 | 1 | 541 | 0.0 | 593 |
| Msa0249360 | AT5G57580.1 | 51.343 | 633 | 228 | 14 | 30 | 604 | 27 | 637 | 0.0 | 591 |
| Msa0249360 | AT4G25800.1 | 52.480 | 625 | 238 | 13 | 11 | 607 | 2 | 595 | 0.0 | 585 |
| Msa0249360 | AT4G25800.2 | 52.480 | 625 | 238 | 13 | 11 | 607 | 2 | 595 | 0.0 | 585 |
| Msa0249360 | AT5G62570.2 | 42.092 | 392 | 200 | 10 | 36 | 421 | 13 | 383 | 8.02e-94 | 297 |
| Msa0249360 | AT5G62570.1 | 42.092 | 392 | 200 | 10 | 36 | 421 | 28 | 398 | 1.63e-93 | 297 |
| Msa0249360 | AT5G62570.4 | 43.017 | 358 | 179 | 9 | 34 | 387 | 26 | 362 | 3.04e-89 | 281 |
| Msa0249360 | AT1G73805.1 | 38.737 | 475 | 241 | 14 | 16 | 484 | 11 | 441 | 2.55e-85 | 274 |
| Msa0249360 | AT5G26920.3 | 37.432 | 366 | 195 | 10 | 37 | 398 | 28 | 363 | 9.90e-70 | 232 |
| Msa0249360 | AT5G62570.3 | 44.718 | 284 | 133 | 8 | 34 | 314 | 26 | 288 | 1.75e-69 | 227 |
| Msa0249360 | AT5G26920.1 | 37.432 | 366 | 195 | 10 | 37 | 398 | 28 | 363 | 1.65e-68 | 233 |
| Msa0249360 | AT5G26920.2 | 37.158 | 366 | 188 | 11 | 37 | 398 | 28 | 355 | 1.86e-66 | 227 |
Find 162 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCTGTGGGAAGCTTC+TGG | 0.087664 | 2_2:+36066639 | Msa0249360:five_prime_UTR |
| TCCCCTGGTGCTTCTATTCT+TGG | 0.164360 | 2_2:-36068055 | None:intergenic |
| TTTCTCAACTTTATTGTTCT+TGG | 0.176255 | 2_2:-36066756 | None:intergenic |
| GAGGCATTCTTGTTCTAAAA+TGG | 0.234537 | 2_2:-36068093 | None:intergenic |
| TTAAGCTTAAAGCAGCTTTA+AGG | 0.234780 | 2_2:+36069833 | Msa0249360:CDS |
| ATTAATGAAGGAGCTAATTT+TGG | 0.248045 | 2_2:+36069700 | Msa0249360:CDS |
| CTAGCTAAACCAGGTAGTTT+TGG | 0.249092 | 2_2:-36066830 | None:intergenic |
| TTTAACTTCGCAACTGATTC+TGG | 0.253100 | 2_2:-36068214 | None:intergenic |
| TGCTTCTGTGGGAAGCTTCT+GGG | 0.255973 | 2_2:+36066640 | Msa0249360:five_prime_UTR |
| TAATAATTACCACCAATTTC+AGG | 0.256767 | 2_2:-36069556 | None:intergenic |
| GGAGCGTGCTTTGGCGAAAT+TGG | 0.266457 | 2_2:+36067422 | Msa0249360:CDS |
| ACCTGACATGTTGTAATTCA+TGG | 0.302589 | 2_2:-36069524 | None:intergenic |
| TGAACAACATTTCCCGTGTT+TGG | 0.304757 | 2_2:-36068184 | None:intergenic |
| CTGCTTTGCATGATGAAGTT+TGG | 0.307314 | 2_2:+36068696 | Msa0249360:CDS |
| TGTAGATTCCTTGGTGAAAA+AGG | 0.319990 | 2_2:+36069243 | Msa0249360:CDS |
| GAAATTGGACCATGCTAAAC+TGG | 0.335370 | 2_2:+36067437 | Msa0249360:CDS |
| GCAAAGACTCTGCTCATCTT+TGG | 0.340248 | 2_2:+36067152 | Msa0249360:CDS |
| TTCTAAATTTAGATATTCAT+TGG | 0.346574 | 2_2:+36066703 | Msa0249360:five_prime_UTR |
| TGTTTGATATATTAGTTTGT+AGG | 0.351642 | 2_2:-36066534 | None:intergenic |
| GGTGATAATAATCCTGAAAT+TGG | 0.356003 | 2_2:+36069544 | Msa0249360:CDS |
| ATGAGGAAATTGATGATGAT+TGG | 0.358972 | 2_2:+36068263 | Msa0249360:CDS |
| TGAGTTTAAATGCTTGAAAT+CGG | 0.365106 | 2_2:+36069916 | Msa0249360:exon |
| ACTTGGTCTATTCTTAAGAT+AGG | 0.367574 | 2_2:-36066680 | None:intergenic |
| TAACACCAAGTCTAAACTTT+CGG | 0.374326 | 2_2:-36068432 | None:intergenic |
| TCTTATCCAGCTAGAATTAT+CGG | 0.375347 | 2_2:-36068407 | None:intergenic |
| GGGAAAAGGCCACTTCTAAC+TGG | 0.383127 | 2_2:+36068328 | Msa0249360:CDS |
| AAGGAAGGAGTAGGAACATT+AGG | 0.389807 | 2_2:+36068370 | Msa0249360:CDS |
| ATTGGATAAGGTTCTAGAAA+TGG | 0.399978 | 2_2:+36066727 | Msa0249360:exon |
| ATTTAGATATTCATTGGGAT+TGG | 0.402995 | 2_2:+36066709 | Msa0249360:five_prime_UTR |
| ATATTCATTGGGATTGGATA+AGG | 0.410512 | 2_2:+36066715 | Msa0249360:five_prime_UTR |
| GCATGATGAAGTTTGGAGAT+TGG | 0.410980 | 2_2:+36068703 | Msa0249360:CDS |
| TAATATTTAATCTCATTGTA+TGG | 0.412134 | 2_2:-36070093 | None:intergenic |
| CCTCACGTTCCTTTACTTCG+TGG | 0.416570 | 2_2:-36068306 | None:intergenic |
| TTCTTTGACTAATTCCAAAA+GGG | 0.417389 | 2_2:+36069315 | Msa0249360:CDS |
| CAGATGCATACTGCTGCTCT+TGG | 0.421224 | 2_2:-36069381 | None:intergenic |
| AATATCTAAATTTAGAAACT+TGG | 0.424064 | 2_2:-36066697 | None:intergenic |
| ATTGGTGGTAATTATTATCA+TGG | 0.424691 | 2_2:+36069562 | Msa0249360:CDS |
| TGCTCAGGCAAGGCTGTTGT+TGG | 0.429293 | 2_2:+36069805 | Msa0249360:CDS |
| TGAAGAAGTGGAGCGTGCTT+TGG | 0.435844 | 2_2:+36067413 | Msa0249360:CDS |
| ATTCTTTGACTAATTCCAAA+AGG | 0.441002 | 2_2:+36069314 | Msa0249360:CDS |
| TCTAAATTTAGATATTCATT+GGG | 0.444899 | 2_2:+36066704 | Msa0249360:five_prime_UTR |
| TAAAGGAACGTGAGGGGAAA+AGG | 0.446042 | 2_2:+36068314 | Msa0249360:CDS |
| TCGCAGAAGAACTTCGGCTT+AGG | 0.447943 | 2_2:+36069629 | Msa0249360:CDS |
| ATCACTCACTTCAAATCAAA+AGG | 0.454320 | 2_2:+36069128 | Msa0249360:CDS |
| AGTCATCCATGTTGTCTTGT+TGG | 0.456149 | 2_2:+36068159 | Msa0249360:CDS |
| CCTGGTGCTTCTATTCTTGG+CGG | 0.458356 | 2_2:-36068052 | None:intergenic |
| ATGTTGTAATTCATGGTTCC+TGG | 0.461025 | 2_2:-36069517 | None:intergenic |
| TACCATCTGATAATCCGAAC+TGG | 0.468563 | 2_2:-36069473 | None:intergenic |
| AAAGTTTAGACTTGGTGTTA+AGG | 0.469299 | 2_2:+36068435 | Msa0249360:CDS |
| CTTGGTGTTAAGGTGGCTCC+TGG | 0.469576 | 2_2:+36068445 | Msa0249360:CDS |
| GTGATTCTAAAGAAAAGAAC+TGG | 0.470764 | 2_2:-36069110 | None:intergenic |
| TCAATACAGGTACTTGGTAG+TGG | 0.472613 | 2_2:+36068937 | Msa0249360:intron |
| AGTTGAGAAAAGAAGTTATG+AGG | 0.476851 | 2_2:+36066769 | Msa0249360:CDS |
| GAAAAGAAGTTATGAGGATG+AGG | 0.480063 | 2_2:+36066775 | Msa0249360:CDS |
| CTCCATCATATTCTATGACT+TGG | 0.480405 | 2_2:-36069282 | None:intergenic |
| ATTATCATGGAGACTGGTCT+AGG | 0.480685 | 2_2:+36069575 | Msa0249360:CDS |
| GCTTAGGAGTTCGCAAATGT+TGG | 0.483183 | 2_2:+36069645 | Msa0249360:CDS |
| TTCACAGGAGGGAAGGTTGA+GGG | 0.486109 | 2_2:+36068124 | Msa0249360:CDS |
| TCAATATGAAGGCTATATTG+AGG | 0.486113 | 2_2:+36068622 | Msa0249360:intron |
| CTTTGAAAGCCACGAAGTAA+AGG | 0.491383 | 2_2:+36068297 | Msa0249360:CDS |
| CTTTCACCGATAATTCTAGC+TGG | 0.492240 | 2_2:+36068401 | Msa0249360:CDS |
| AAACAGAAACAAAGTAAGAA+AGG | 0.501330 | 2_2:-36066571 | None:intergenic |
| GGGAAGGTTGAGGGAGAGCA+AGG | 0.502361 | 2_2:+36068133 | Msa0249360:CDS |
| GCTTCTTTGACTGAGTAAGA+TGG | 0.506593 | 2_2:-36066808 | None:intergenic |
| AGCTTAAAGCAGCTTTAAGG+TGG | 0.507495 | 2_2:+36069836 | Msa0249360:CDS |
| ACGGGAAATGTTGTTCAAGT+TGG | 0.508647 | 2_2:+36068190 | Msa0249360:CDS |
| TTGTTCAATACTGCAGTTGG+TGG | 0.508801 | 2_2:-36070069 | None:intergenic |
| CAGGCAAGGCTGTTGTTGGG+TGG | 0.514153 | 2_2:+36069809 | Msa0249360:CDS |
| CAAAACTACCTGGTTTAGCT+AGG | 0.519085 | 2_2:+36066831 | Msa0249360:CDS |
| CGAATCCCGTCACAATATCC+AGG | 0.519800 | 2_2:-36068463 | None:intergenic |
| TAGGAGTTCGCAAATGTTGG+AGG | 0.522224 | 2_2:+36069648 | Msa0249360:CDS |
| GCTTCTGTGGGAAGCTTCTG+GGG | 0.522703 | 2_2:+36066641 | Msa0249360:five_prime_UTR |
| TGTAATTGTGGAAGCATTGA+AGG | 0.522949 | 2_2:+36067119 | Msa0249360:CDS |
| GTAATTATTATCATGGAGAC+TGG | 0.523399 | 2_2:+36069569 | Msa0249360:CDS |
| CAAACTTCATCATGCAAAGC+AGG | 0.525398 | 2_2:-36068695 | None:intergenic |
| CATGCTAAGACATGTGTGTT+GGG | 0.526739 | 2_2:+36068994 | Msa0249360:CDS |
| ACCATGAATTACAACATGTC+AGG | 0.527787 | 2_2:+36069523 | Msa0249360:CDS |
| GAGGATAATGTCAAGTGCTC+AGG | 0.527975 | 2_2:+36069790 | Msa0249360:CDS |
| GCAGAGAAACGGACAAGGGT+TGG | 0.529494 | 2_2:+36069597 | Msa0249360:CDS |
| GCAGATGTCTGTAGATTCCT+TGG | 0.531398 | 2_2:+36069234 | Msa0249360:intron |
| TTACTTAAGACTATTAATGA+AGG | 0.533466 | 2_2:+36069688 | Msa0249360:CDS |
| GCTCAGGCAAGGCTGTTGTT+GGG | 0.534129 | 2_2:+36069806 | Msa0249360:CDS |
| ATTCACAGGAGGGAAGGTTG+AGG | 0.534510 | 2_2:+36068123 | Msa0249360:CDS |
| CAGCAGTATGCATCTGCAAA+GGG | 0.538227 | 2_2:+36069388 | Msa0249360:CDS |
| CCGCCAAGAATAGAAGCACC+AGG | 0.541056 | 2_2:+36068052 | Msa0249360:CDS |
| AGATTTGCAAGTTAGTCTAA+AGG | 0.541446 | 2_2:+36068351 | Msa0249360:CDS |
| GGTTTGTTCAATACTGCAGT+TGG | 0.541973 | 2_2:-36070072 | None:intergenic |
| TCTATGATCTTTAACAGCAA+AGG | 0.544423 | 2_2:-36068509 | None:intergenic |
| CTTACACTTCTTAATTTCTG+TGG | 0.544648 | 2_2:-36068818 | None:intergenic |
| GACTGGTCTAGGCAGAGAAA+CGG | 0.545642 | 2_2:+36069586 | Msa0249360:CDS |
| GCTTAAAGCAGCTTTAAGGT+GGG | 0.551907 | 2_2:+36069837 | Msa0249360:CDS |
| AGTTCGGATTATCAGATGGT+AGG | 0.552487 | 2_2:+36069475 | Msa0249360:CDS |
| GATAATAATCCTGAAATTGG+TGG | 0.552833 | 2_2:+36069547 | Msa0249360:CDS |
| TGGCTCCTGGATATTGTGAC+GGG | 0.555314 | 2_2:+36068458 | Msa0249360:CDS |
| TTCTTAATTTCTGTGGCTCG+CGG | 0.555637 | 2_2:-36068811 | None:intergenic |
| GACCAAGTCATAGAATATGA+TGG | 0.555949 | 2_2:+36069280 | Msa0249360:CDS |
| ATGCCTCCTCACTTATTCAC+AGG | 0.560024 | 2_2:+36068109 | Msa0249360:CDS |
| CTAAGAGGTCTCATTGCTGA+TGG | 0.560083 | 2_2:+36069087 | Msa0249360:CDS |
| GTTCGGATTATCAGATGGTA+GGG | 0.561192 | 2_2:+36069476 | Msa0249360:CDS |
| AGAAGCCGAAAGTTTAGACT+TGG | 0.563077 | 2_2:+36068427 | Msa0249360:CDS |
| GAAGTTAAATGTTGTTGTGC+TGG | 0.563996 | 2_2:+36068228 | Msa0249360:CDS |
| ATGAAGTTTGGAGATTGGAT+CGG | 0.564012 | 2_2:+36068708 | Msa0249360:CDS |
| TCACTTATTCACAGGAGGGA+AGG | 0.564488 | 2_2:+36068117 | Msa0249360:CDS |
| ACATTGTCGCAGAAGAACTT+CGG | 0.565117 | 2_2:+36069623 | Msa0249360:CDS |
| TGTCTTGTTGGATCCAAACA+CGG | 0.566446 | 2_2:+36068171 | Msa0249360:CDS |
| GAATAACTACTCATCCAGTT+CGG | 0.566553 | 2_2:+36069459 | Msa0249360:CDS |
| GTTTAGACTTGGTGTTAAGG+TGG | 0.566982 | 2_2:+36068438 | Msa0249360:CDS |
| GTTAGTCTAAAGGAAGGAGT+AGG | 0.569301 | 2_2:+36068361 | Msa0249360:CDS |
| CTTAAAGCAGCTTTAAGGTG+GGG | 0.570067 | 2_2:+36069838 | Msa0249360:CDS |
| TTGCAAGTTAGTCTAAAGGA+AGG | 0.570603 | 2_2:+36068355 | Msa0249360:CDS |
| TTTGGAGATTTGGTATGTGA+AGG | 0.572640 | 2_2:+36070017 | Msa0249360:three_prime_UTR |
| GGAGATTTGGTATGTGAAGG+TGG | 0.573252 | 2_2:+36070020 | Msa0249360:three_prime_UTR |
| TGCAAATCTCCAGTTAGAAG+TGG | 0.579936 | 2_2:-36068337 | None:intergenic |
| TGACGGGATTCGAGTGCGTG+AGG | 0.580615 | 2_2:+36068474 | Msa0249360:CDS |
| GTGGAATGTCAAACAGAATG+TGG | 0.581489 | 2_2:+36068956 | Msa0249360:CDS |
| TCAAAGAAGCCAAAACTACC+TGG | 0.581861 | 2_2:+36066821 | Msa0249360:CDS |
| GTCTTGTTGGATCCAAACAC+GGG | 0.582870 | 2_2:+36068172 | Msa0249360:CDS |
| GCAGCAGTATGCATCTGCAA+AGG | 0.584416 | 2_2:+36069387 | Msa0249360:CDS |
| TTTGCTGTTAAAGATCATAG+AGG | 0.584829 | 2_2:+36068511 | Msa0249360:CDS |
| GCAAATGTACAGTGTAATTG+TGG | 0.585229 | 2_2:+36067107 | Msa0249360:intron |
| ACCATGCTAAACTGGGTGAC+AGG | 0.585986 | 2_2:+36067445 | Msa0249360:CDS |
| TCTTTGACTAATTCCAAAAG+GGG | 0.586778 | 2_2:+36069316 | Msa0249360:CDS |
| CTTACAGGTAAGTGAAGAAG+TGG | 0.588186 | 2_2:+36067401 | Msa0249360:intron |
| GCATGCTAAGACATGTGTGT+TGG | 0.592550 | 2_2:+36068993 | Msa0249360:CDS |
| GTGGCTCCTGGATATTGTGA+CGG | 0.594325 | 2_2:+36068457 | Msa0249360:CDS |
| GTATGCATCTGCAAAGGGAA+GGG | 0.595195 | 2_2:+36069393 | Msa0249360:CDS |
| AGTATGCATCTGCAAAGGGA+AGG | 0.595436 | 2_2:+36069392 | Msa0249360:CDS |
| TTAAATGTTGTTGTGCTGGA+AGG | 0.596826 | 2_2:+36068232 | Msa0249360:CDS |
| ACTGATGAAACTCATAGCAC+TGG | 0.598016 | 2_2:+36069039 | Msa0249360:CDS |
| ACCTGTCACCCAGTTTAGCA+TGG | 0.606805 | 2_2:-36067446 | None:intergenic |
| AAGACGCAGGAAATCTTCTA+CGG | 0.608096 | 2_2:-36068783 | None:intergenic |
| TAATGTCAAGTGCTCAGGCA+AGG | 0.608603 | 2_2:+36069795 | Msa0249360:CDS |
| CCTCCTCACTTATTCACAGG+AGG | 0.610687 | 2_2:+36068112 | Msa0249360:CDS |
| GACGGGATTCGAGTGCGTGA+GGG | 0.611142 | 2_2:+36068475 | Msa0249360:CDS |
| TTGAAATACCTAGCTAAACC+AGG | 0.612518 | 2_2:-36066839 | None:intergenic |
| ATCCAGTTCGGATTATCAGA+TGG | 0.612546 | 2_2:+36069471 | Msa0249360:CDS |
| GAGATTGGATCGGATAGCAA+AGG | 0.612915 | 2_2:+36068718 | Msa0249360:CDS |
| AAATTGGACCATGCTAAACT+GGG | 0.615323 | 2_2:+36067438 | Msa0249360:CDS |
| TCTAGGCAGAGAAACGGACA+AGG | 0.618669 | 2_2:+36069592 | Msa0249360:CDS |
| TTCCCTCCTGTGAATAAGTG+AGG | 0.620654 | 2_2:-36068115 | None:intergenic |
| CCACGAAGTAAAGGAACGTG+AGG | 0.622907 | 2_2:+36068306 | Msa0249360:CDS |
| TGGAATGTCAAACAGAATGT+GGG | 0.623286 | 2_2:+36068957 | Msa0249360:CDS |
| AGGAGTTCGCAAATGTTGGA+GGG | 0.625466 | 2_2:+36069649 | Msa0249360:CDS |
| CTCCTCACTTATTCACAGGA+GGG | 0.626882 | 2_2:+36068113 | Msa0249360:CDS |
| AACAACATATATGAGCTAAG+AGG | 0.636409 | 2_2:+36069072 | Msa0249360:CDS |
| CACGAAGTAAAGGAACGTGA+GGG | 0.637636 | 2_2:+36068307 | Msa0249360:CDS |
| AGAAATCTATAAAAGACTAG+AGG | 0.638903 | 2_2:+36069977 | Msa0249360:three_prime_UTR |
| CGCCAAGAATAGAAGCACCA+GGG | 0.641290 | 2_2:+36068053 | Msa0249360:CDS |
| GCCAAGAATAGAAGCACCAG+GGG | 0.641379 | 2_2:+36068054 | Msa0249360:CDS |
| ACATCACAAATAGCATTACC+AGG | 0.641397 | 2_2:+36069499 | Msa0249360:CDS |
| ACTTCATCATGCAAAGCAGG+TGG | 0.646109 | 2_2:-36068692 | None:intergenic |
| AATTGTGGAAGCATTGAAGG+TGG | 0.654590 | 2_2:+36067122 | Msa0249360:CDS |
| TTGGATCGGATAGCAAAGGA+TGG | 0.661274 | 2_2:+36068722 | Msa0249360:CDS |
| CTGAACGAATGATACATCTG+AGG | 0.671246 | 2_2:-36069766 | None:intergenic |
| TTGGATCCAACAAGACAACA+TGG | 0.676027 | 2_2:-36068165 | None:intergenic |
| CCTCCTGTGAATAAGTGAGG+AGG | 0.676250 | 2_2:-36068112 | None:intergenic |
| GCTCGCGGACAAGAAGACGC+AGG | 0.689588 | 2_2:-36068796 | None:intergenic |
| ACGAAGTAAAGGAACGTGAG+GGG | 0.705159 | 2_2:+36068308 | Msa0249360:CDS |
| GATGTATCATTCGTTCAGCG+AGG | 0.717492 | 2_2:+36069771 | Msa0249360:CDS |
| CAGAATGTGGGAGAACACTG+TGG | 0.727384 | 2_2:+36068969 | Msa0249360:CDS |
| CTAGGCAGAGAAACGGACAA+GGG | 0.731036 | 2_2:+36069593 | Msa0249360:CDS |
| TGGAGGGTGATGATATGCAG+AGG | 0.746794 | 2_2:+36069665 | Msa0249360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTATTTATTTTCGAT+AGG | - | chr2_2:36067654-36067673 | None:intergenic | 10.0% |
| !! | AATATCTAAATTTAGAAACT+TGG | - | chr2_2:36066700-36066719 | None:intergenic | 15.0% |
| !! | TTCTAAATTTAGATATTCAT+TGG | + | chr2_2:36066703-36066722 | Msa0249360:five_prime_UTR | 15.0% |
| !! | TCTAAATTTAGATATTCATT+GGG | + | chr2_2:36066704-36066723 | Msa0249360:five_prime_UTR | 15.0% |
| !! | CTTCTAAATTAAAATACTAT+AGG | - | chr2_2:36066895-36066914 | None:intergenic | 15.0% |
| !! | AATAATAATTGATATCTGTT+AGG | + | chr2_2:36067664-36067683 | Msa0249360:intron | 15.0% |
| !!! | AAAATTGTTTGTTTTTCATA+GGG | - | chr2_2:36067779-36067798 | None:intergenic | 15.0% |
| !!! | AAAAATTGTTTGTTTTTCAT+AGG | - | chr2_2:36067780-36067799 | None:intergenic | 15.0% |
| !!! | GATGAAAAAAAAAAATGTTT+TGG | + | chr2_2:36069999-36070018 | Msa0249360:three_prime_UTR | 15.0% |
| !! | TAATATTTAATCTCATTGTA+TGG | - | chr2_2:36070096-36070115 | None:intergenic | 15.0% |
| !!! | TGTTTGATATATTAGTTTGT+AGG | - | chr2_2:36066537-36066556 | None:intergenic | 20.0% |
| !!! | TTTATCAACTCAAACTTTTA+AGG | + | chr2_2:36066591-36066610 | Msa0249360:five_prime_UTR | 20.0% |
| !! | TTTAGTAGAATCTCATATAA+TGG | + | chr2_2:36066985-36067004 | Msa0249360:intron | 20.0% |
| !! | ATCTTGTATTTATAAGTCAA+AGG | + | chr2_2:36067009-36067028 | Msa0249360:intron | 20.0% |
| !! | TAATACATGTATATAAGTTG+TGG | - | chr2_2:36067971-36067990 | None:intergenic | 20.0% |
| !!! | CAACAATTTTTTCAATATGA+AGG | + | chr2_2:36068611-36068630 | Msa0249360:intron | 20.0% |
| !! | TTACTTAAGACTATTAATGA+AGG | + | chr2_2:36069688-36069707 | Msa0249360:CDS | 20.0% |
| !!! | AAAAAAATGTTTTGGAGATT+TGG | + | chr2_2:36070007-36070026 | Msa0249360:three_prime_UTR | 20.0% |
| ! | AAACAGAAACAAAGTAAGAA+AGG | - | chr2_2:36066574-36066593 | None:intergenic | 25.0% |
| ! | ATTTAGATATTCATTGGGAT+TGG | + | chr2_2:36066709-36066728 | Msa0249360:five_prime_UTR | 25.0% |
| ! | TTTCTCAACTTTATTGTTCT+TGG | - | chr2_2:36066759-36066778 | None:intergenic | 25.0% |
| ! | TTCTTTCTACTAATGTAGTA+TGG | + | chr2_2:36066924-36066943 | Msa0249360:intron | 25.0% |
| ! | TTGTGAAATATTCAAGCAAA+GGG | - | chr2_2:36067279-36067298 | None:intergenic | 25.0% |
| ! | TTTGTGAAATATTCAAGCAA+AGG | - | chr2_2:36067280-36067299 | None:intergenic | 25.0% |
| ! | TGCTTGAATATTTCACAAAA+AGG | + | chr2_2:36067281-36067300 | Msa0249360:intron | 25.0% |
| ! | AATTTACATCATACCGTTAA+GGG | - | chr2_2:36067597-36067616 | None:intergenic | 25.0% |
| ! | TAATTTACATCATACCGTTA+AGG | - | chr2_2:36067598-36067617 | None:intergenic | 25.0% |
| !!! | CTCTAATCATATTTTTTCGA+AGG | + | chr2_2:36068882-36068901 | Msa0249360:intron | 25.0% |
| ! | ATTCTTTGACTAATTCCAAA+AGG | + | chr2_2:36069314-36069333 | Msa0249360:CDS | 25.0% |
| ! | TTCTTTGACTAATTCCAAAA+GGG | + | chr2_2:36069315-36069334 | Msa0249360:CDS | 25.0% |
| !!! | TTGCAAATGTTGATTTTGTT+TGG | - | chr2_2:36069434-36069453 | None:intergenic | 25.0% |
| ! | TAATAATTACCACCAATTTC+AGG | - | chr2_2:36069559-36069578 | None:intergenic | 25.0% |
| !! | ATTGGTGGTAATTATTATCA+TGG | + | chr2_2:36069562-36069581 | Msa0249360:CDS | 25.0% |
| !! | ATTAATGAAGGAGCTAATTT+TGG | + | chr2_2:36069700-36069719 | Msa0249360:CDS | 25.0% |
| ! | TGAGTTTAAATGCTTGAAAT+CGG | + | chr2_2:36069916-36069935 | Msa0249360:exon | 25.0% |
| ! | AGAAATCTATAAAAGACTAG+AGG | + | chr2_2:36069977-36069996 | Msa0249360:three_prime_UTR | 25.0% |
| CAGAAGCAGAAAAAAAATCT+TGG | - | chr2_2:36066628-36066647 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTTCTGCTTCTG+TGG | + | chr2_2:36066628-36066647 | Msa0249360:five_prime_UTR | 30.0% |
| !!! | GATTTTTTTTCTGCTTCTGT+GGG | + | chr2_2:36066629-36066648 | Msa0249360:five_prime_UTR | 30.0% |
| ACTTGGTCTATTCTTAAGAT+AGG | - | chr2_2:36066683-36066702 | None:intergenic | 30.0% | |
| ATATTCATTGGGATTGGATA+AGG | + | chr2_2:36066715-36066734 | Msa0249360:five_prime_UTR | 30.0% | |
| !! | ATTGGATAAGGTTCTAGAAA+TGG | + | chr2_2:36066727-36066746 | Msa0249360:exon | 30.0% |
| AGTTGAGAAAAGAAGTTATG+AGG | + | chr2_2:36066769-36066788 | Msa0249360:CDS | 30.0% | |
| TTAAACTGCTAACACAATAC+AGG | - | chr2_2:36067214-36067233 | None:intergenic | 30.0% | |
| GGTTATCAAATCAAAGAACA+TGG | + | chr2_2:36067302-36067321 | Msa0249360:intron | 30.0% | |
| TCAGAATTCTAATCTGACTA+GGG | - | chr2_2:36067477-36067496 | None:intergenic | 30.0% | |
| TTCAGAATTCTAATCTGACT+AGG | - | chr2_2:36067478-36067497 | None:intergenic | 30.0% | |
| CGGTATGATGTAAATTAGAA+TGG | + | chr2_2:36067601-36067620 | Msa0249360:intron | 30.0% | |
| TCTCAACAACCTAAAATTTC+AGG | + | chr2_2:36067991-36068010 | Msa0249360:intron | 30.0% | |
| CAACTAAAATGTATCAGAGA+CGG | - | chr2_2:36068019-36068038 | None:intergenic | 30.0% | |
| !! | ATGAGGAAATTGATGATGAT+TGG | + | chr2_2:36068263-36068282 | Msa0249360:CDS | 30.0% |
| ! | AGATTTGCAAGTTAGTCTAA+AGG | + | chr2_2:36068351-36068370 | Msa0249360:CDS | 30.0% |
| TCTTATCCAGCTAGAATTAT+CGG | - | chr2_2:36068410-36068429 | None:intergenic | 30.0% | |
| TAACACCAAGTCTAAACTTT+CGG | - | chr2_2:36068435-36068454 | None:intergenic | 30.0% | |
| !! | AAAGTTTAGACTTGGTGTTA+AGG | + | chr2_2:36068435-36068454 | Msa0249360:CDS | 30.0% |
| TCTATGATCTTTAACAGCAA+AGG | - | chr2_2:36068512-36068531 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTAAAGATCATAG+AGG | + | chr2_2:36068511-36068530 | Msa0249360:CDS | 30.0% |
| ATATAGTAGAGTAAGAACGA+AGG | + | chr2_2:36068588-36068607 | Msa0249360:intron | 30.0% | |
| TCAATATGAAGGCTATATTG+AGG | + | chr2_2:36068622-36068641 | Msa0249360:intron | 30.0% | |
| CTTACACTTCTTAATTTCTG+TGG | - | chr2_2:36068821-36068840 | None:intergenic | 30.0% | |
| AACAACATATATGAGCTAAG+AGG | + | chr2_2:36069072-36069091 | Msa0249360:CDS | 30.0% | |
| ! | GTGATTCTAAAGAAAAGAAC+TGG | - | chr2_2:36069113-36069132 | None:intergenic | 30.0% |
| ATCACTCACTTCAAATCAAA+AGG | + | chr2_2:36069128-36069147 | Msa0249360:CDS | 30.0% | |
| ! | TGAAAAAGGCGTATGATAAT+TGG | + | chr2_2:36069257-36069276 | Msa0249360:CDS | 30.0% |
| ! | GAAAAAGGCGTATGATAATT+GGG | + | chr2_2:36069258-36069277 | Msa0249360:CDS | 30.0% |
| TCTTTGACTAATTCCAAAAG+GGG | + | chr2_2:36069316-36069335 | Msa0249360:CDS | 30.0% | |
| GGTGATAATAATCCTGAAAT+TGG | + | chr2_2:36069544-36069563 | Msa0249360:CDS | 30.0% | |
| GATAATAATCCTGAAATTGG+TGG | + | chr2_2:36069547-36069566 | Msa0249360:CDS | 30.0% | |
| GTAATTATTATCATGGAGAC+TGG | + | chr2_2:36069569-36069588 | Msa0249360:CDS | 30.0% | |
| TTAAGCTTAAAGCAGCTTTA+AGG | + | chr2_2:36069833-36069852 | Msa0249360:CDS | 30.0% | |
| GAAAAGAAGTTATGAGGATG+AGG | + | chr2_2:36066775-36066794 | Msa0249360:CDS | 35.0% | |
| TTGAAATACCTAGCTAAACC+AGG | - | chr2_2:36066842-36066861 | None:intergenic | 35.0% | |
| GCAAATGTACAGTGTAATTG+TGG | + | chr2_2:36067107-36067126 | Msa0249360:intron | 35.0% | |
| !! | TGTAATTGTGGAAGCATTGA+AGG | + | chr2_2:36067119-36067138 | Msa0249360:CDS | 35.0% |
| !! | CTCACAATTTTTCTGAGAAG+AGG | - | chr2_2:36067180-36067199 | None:intergenic | 35.0% |
| GGGTCTATTATTGCATAGAA+CGG | - | chr2_2:36067259-36067278 | None:intergenic | 35.0% | |
| AAATTGGACCATGCTAAACT+GGG | + | chr2_2:36067438-36067457 | Msa0249360:CDS | 35.0% | |
| ATATTGCGTACATTCATCCA+CGG | - | chr2_2:36067701-36067720 | None:intergenic | 35.0% | |
| !!! | CTGGAATCTGTGGTTTTTTT+AGG | - | chr2_2:36067750-36067769 | None:intergenic | 35.0% |
| AAAAATAAACCGAGACACGT+TGG | + | chr2_2:36067810-36067829 | Msa0249360:intron | 35.0% | |
| TGTGTTGAAAACTTGACAGA+AGG | - | chr2_2:36067837-36067856 | None:intergenic | 35.0% | |
| !!! | TGATACATTTTAGTTGTGCC+AGG | + | chr2_2:36068023-36068042 | Msa0249360:intron | 35.0% |
| !! | GAGGCATTCTTGTTCTAAAA+TGG | - | chr2_2:36068096-36068115 | None:intergenic | 35.0% |
| ! | TTTAACTTCGCAACTGATTC+TGG | - | chr2_2:36068217-36068236 | None:intergenic | 35.0% |
| GAAGTTAAATGTTGTTGTGC+TGG | + | chr2_2:36068228-36068247 | Msa0249360:CDS | 35.0% | |
| TTAAATGTTGTTGTGCTGGA+AGG | + | chr2_2:36068232-36068251 | Msa0249360:CDS | 35.0% | |
| ! | TTGCAAGTTAGTCTAAAGGA+AGG | + | chr2_2:36068355-36068374 | Msa0249360:CDS | 35.0% |
| ATGAAGTTTGGAGATTGGAT+CGG | + | chr2_2:36068708-36068727 | Msa0249360:CDS | 35.0% | |
| ATGATTAGAGAAGAGTGATG+TGG | - | chr2_2:36068872-36068891 | None:intergenic | 35.0% | |
| AAGTACCTGTATTGAAAAGG+TGG | - | chr2_2:36068932-36068951 | None:intergenic | 35.0% | |
| ! | ACCTTTTCAATACAGGTACT+TGG | + | chr2_2:36068931-36068950 | Msa0249360:intron | 35.0% |
| ACCAAGTACCTGTATTGAAA+AGG | - | chr2_2:36068935-36068954 | None:intergenic | 35.0% | |
| TGGAATGTCAAACAGAATGT+GGG | + | chr2_2:36068957-36068976 | Msa0249360:CDS | 35.0% | |
| TGTAGATTCCTTGGTGAAAA+AGG | + | chr2_2:36069243-36069262 | Msa0249360:CDS | 35.0% | |
| GACCAAGTCATAGAATATGA+TGG | + | chr2_2:36069280-36069299 | Msa0249360:CDS | 35.0% | |
| CTCCATCATATTCTATGACT+TGG | - | chr2_2:36069285-36069304 | None:intergenic | 35.0% | |
| !! | TACAGATTTTGATCCCCTTT+TGG | - | chr2_2:36069332-36069351 | None:intergenic | 35.0% |
| GAATAACTACTCATCCAGTT+CGG | + | chr2_2:36069459-36069478 | Msa0249360:CDS | 35.0% | |
| ACATCACAAATAGCATTACC+AGG | + | chr2_2:36069499-36069518 | Msa0249360:CDS | 35.0% | |
| ATGTTGTAATTCATGGTTCC+TGG | - | chr2_2:36069520-36069539 | None:intergenic | 35.0% | |
| ACCATGAATTACAACATGTC+AGG | + | chr2_2:36069523-36069542 | Msa0249360:CDS | 35.0% | |
| ACCTGACATGTTGTAATTCA+TGG | - | chr2_2:36069527-36069546 | None:intergenic | 35.0% | |
| ! | TTTGGAGATTTGGTATGTGA+AGG | + | chr2_2:36070017-36070036 | Msa0249360:three_prime_UTR | 35.0% |
| GCTTCTTTGACTGAGTAAGA+TGG | - | chr2_2:36066811-36066830 | None:intergenic | 40.0% | |
| TCAAAGAAGCCAAAACTACC+TGG | + | chr2_2:36066821-36066840 | Msa0249360:CDS | 40.0% | |
| ! | CTAGCTAAACCAGGTAGTTT+TGG | - | chr2_2:36066833-36066852 | None:intergenic | 40.0% |
| CAAAACTACCTGGTTTAGCT+AGG | + | chr2_2:36066831-36066850 | Msa0249360:CDS | 40.0% | |
| !! | AATTGTGGAAGCATTGAAGG+TGG | + | chr2_2:36067122-36067141 | Msa0249360:CDS | 40.0% |
| AGTTAATCGTTCTGATTCCG+TGG | + | chr2_2:36067378-36067397 | Msa0249360:intron | 40.0% | |
| CTTACAGGTAAGTGAAGAAG+TGG | + | chr2_2:36067401-36067420 | Msa0249360:intron | 40.0% | |
| GAAATTGGACCATGCTAAAC+TGG | + | chr2_2:36067437-36067456 | Msa0249360:CDS | 40.0% | |
| TGATCACATGTAGCCCTTAA+CGG | + | chr2_2:36067581-36067600 | Msa0249360:intron | 40.0% | |
| TATTGCGTACATTCATCCAC+GGG | - | chr2_2:36067700-36067719 | None:intergenic | 40.0% | |
| ! | GTTTTTCATAGGGACTAAGC+TGG | - | chr2_2:36067769-36067788 | None:intergenic | 40.0% |
| ! | GTGTTACACTGAAGAGCATA+AGG | + | chr2_2:36067905-36067924 | Msa0249360:intron | 40.0% |
| ! | GAGACGGATCCTGAAATTTT+AGG | - | chr2_2:36068003-36068022 | None:intergenic | 40.0% |
| AGTCATCCATGTTGTCTTGT+TGG | + | chr2_2:36068159-36068178 | Msa0249360:CDS | 40.0% | |
| TTGGATCCAACAAGACAACA+TGG | - | chr2_2:36068168-36068187 | None:intergenic | 40.0% | |
| ! | TGTCTTGTTGGATCCAAACA+CGG | + | chr2_2:36068171-36068190 | Msa0249360:CDS | 40.0% |
| TGAACAACATTTCCCGTGTT+TGG | - | chr2_2:36068187-36068206 | None:intergenic | 40.0% | |
| ACGGGAAATGTTGTTCAAGT+TGG | + | chr2_2:36068190-36068209 | Msa0249360:CDS | 40.0% | |
| !! | GCTGGAAGGTGATTTTAATG+AGG | + | chr2_2:36068246-36068265 | Msa0249360:CDS | 40.0% |
| ! | CTTTGAAAGCCACGAAGTAA+AGG | + | chr2_2:36068297-36068316 | Msa0249360:CDS | 40.0% |
| TGCAAATCTCCAGTTAGAAG+TGG | - | chr2_2:36068340-36068359 | None:intergenic | 40.0% | |
| ! | GTTAGTCTAAAGGAAGGAGT+AGG | + | chr2_2:36068361-36068380 | Msa0249360:CDS | 40.0% |
| AAGGAAGGAGTAGGAACATT+AGG | + | chr2_2:36068370-36068389 | Msa0249360:CDS | 40.0% | |
| CTTTCACCGATAATTCTAGC+TGG | + | chr2_2:36068401-36068420 | Msa0249360:CDS | 40.0% | |
| AGAAGCCGAAAGTTTAGACT+TGG | + | chr2_2:36068427-36068446 | Msa0249360:CDS | 40.0% | |
| !! | GTTTAGACTTGGTGTTAAGG+TGG | + | chr2_2:36068438-36068457 | Msa0249360:CDS | 40.0% |
| CAAACTTCATCATGCAAAGC+AGG | - | chr2_2:36068698-36068717 | None:intergenic | 40.0% | |
| CTGCTTTGCATGATGAAGTT+TGG | + | chr2_2:36068696-36068715 | Msa0249360:CDS | 40.0% | |
| GCATGATGAAGTTTGGAGAT+TGG | + | chr2_2:36068703-36068722 | Msa0249360:CDS | 40.0% | |
| AAGACGCAGGAAATCTTCTA+CGG | - | chr2_2:36068786-36068805 | None:intergenic | 40.0% | |
| TTCTTAATTTCTGTGGCTCG+CGG | - | chr2_2:36068814-36068833 | None:intergenic | 40.0% | |
| TTAGAGAAGAGTGATGTGGA+TGG | - | chr2_2:36068868-36068887 | None:intergenic | 40.0% | |
| ! | GTTTGCCACCTTTTCAATAC+AGG | + | chr2_2:36068924-36068943 | Msa0249360:intron | 40.0% |
| TCAATACAGGTACTTGGTAG+TGG | + | chr2_2:36068937-36068956 | Msa0249360:intron | 40.0% | |
| GTGGAATGTCAAACAGAATG+TGG | + | chr2_2:36068956-36068975 | Msa0249360:CDS | 40.0% | |
| CATGCTAAGACATGTGTGTT+GGG | + | chr2_2:36068994-36069013 | Msa0249360:CDS | 40.0% | |
| ACTGATGAAACTCATAGCAC+TGG | + | chr2_2:36069039-36069058 | Msa0249360:CDS | 40.0% | |
| !! | ATCATACGCCTTTTTCACCA+AGG | - | chr2_2:36069254-36069273 | None:intergenic | 40.0% |
| ATCCAGTTCGGATTATCAGA+TGG | + | chr2_2:36069471-36069490 | Msa0249360:CDS | 40.0% | |
| TACCATCTGATAATCCGAAC+TGG | - | chr2_2:36069476-36069495 | None:intergenic | 40.0% | |
| AGTTCGGATTATCAGATGGT+AGG | + | chr2_2:36069475-36069494 | Msa0249360:CDS | 40.0% | |
| GTTCGGATTATCAGATGGTA+GGG | + | chr2_2:36069476-36069495 | Msa0249360:CDS | 40.0% | |
| !! | ATTATCATGGAGACTGGTCT+AGG | + | chr2_2:36069575-36069594 | Msa0249360:CDS | 40.0% |
| ACATTGTCGCAGAAGAACTT+CGG | + | chr2_2:36069623-36069642 | Msa0249360:CDS | 40.0% | |
| CTGAACGAATGATACATCTG+AGG | - | chr2_2:36069769-36069788 | None:intergenic | 40.0% | |
| !! | AGCTTAAAGCAGCTTTAAGG+TGG | + | chr2_2:36069836-36069855 | Msa0249360:CDS | 40.0% |
| !! | GCTTAAAGCAGCTTTAAGGT+GGG | + | chr2_2:36069837-36069856 | Msa0249360:CDS | 40.0% |
| !! | CTTAAAGCAGCTTTAAGGTG+GGG | + | chr2_2:36069838-36069857 | Msa0249360:CDS | 40.0% |
| TTGTTCAATACTGCAGTTGG+TGG | - | chr2_2:36070072-36070091 | None:intergenic | 40.0% | |
| ! | GGTTTGTTCAATACTGCAGT+TGG | - | chr2_2:36070075-36070094 | None:intergenic | 40.0% |
| GCAAAGACTCTGCTCATCTT+TGG | + | chr2_2:36067152-36067171 | Msa0249360:CDS | 45.0% | |
| CTTCACTTACCTGTAAGCCA+CGG | - | chr2_2:36067398-36067417 | None:intergenic | 45.0% | |
| ATGCCTCCTCACTTATTCAC+AGG | + | chr2_2:36068109-36068128 | Msa0249360:CDS | 45.0% | |
| CTCCTCACTTATTCACAGGA+GGG | + | chr2_2:36068113-36068132 | Msa0249360:CDS | 45.0% | |
| TTCCCTCCTGTGAATAAGTG+AGG | - | chr2_2:36068118-36068137 | None:intergenic | 45.0% | |
| TCACTTATTCACAGGAGGGA+AGG | + | chr2_2:36068117-36068136 | Msa0249360:CDS | 45.0% | |
| ! | GTCTTGTTGGATCCAAACAC+GGG | + | chr2_2:36068172-36068191 | Msa0249360:CDS | 45.0% |
| CACGAAGTAAAGGAACGTGA+GGG | + | chr2_2:36068307-36068326 | Msa0249360:CDS | 45.0% | |
| ACGAAGTAAAGGAACGTGAG+GGG | + | chr2_2:36068308-36068327 | Msa0249360:CDS | 45.0% | |
| TAAAGGAACGTGAGGGGAAA+AGG | + | chr2_2:36068314-36068333 | Msa0249360:CDS | 45.0% | |
| ACTTCATCATGCAAAGCAGG+TGG | - | chr2_2:36068695-36068714 | None:intergenic | 45.0% | |
| GAGATTGGATCGGATAGCAA+AGG | + | chr2_2:36068718-36068737 | Msa0249360:CDS | 45.0% | |
| TTGGATCGGATAGCAAAGGA+TGG | + | chr2_2:36068722-36068741 | Msa0249360:CDS | 45.0% | |
| GCATGCTAAGACATGTGTGT+TGG | + | chr2_2:36068993-36069012 | Msa0249360:CDS | 45.0% | |
| CTAAGAGGTCTCATTGCTGA+TGG | + | chr2_2:36069087-36069106 | Msa0249360:CDS | 45.0% | |
| GCAGATGTCTGTAGATTCCT+TGG | + | chr2_2:36069234-36069253 | Msa0249360:intron | 45.0% | |
| CAGCAGTATGCATCTGCAAA+GGG | + | chr2_2:36069388-36069407 | Msa0249360:CDS | 45.0% | |
| AGTATGCATCTGCAAAGGGA+AGG | + | chr2_2:36069392-36069411 | Msa0249360:CDS | 45.0% | |
| GTATGCATCTGCAAAGGGAA+GGG | + | chr2_2:36069393-36069412 | Msa0249360:CDS | 45.0% | |
| GCTTAGGAGTTCGCAAATGT+TGG | + | chr2_2:36069645-36069664 | Msa0249360:CDS | 45.0% | |
| TAGGAGTTCGCAAATGTTGG+AGG | + | chr2_2:36069648-36069667 | Msa0249360:CDS | 45.0% | |
| AGGAGTTCGCAAATGTTGGA+GGG | + | chr2_2:36069649-36069668 | Msa0249360:CDS | 45.0% | |
| GATGTATCATTCGTTCAGCG+AGG | + | chr2_2:36069771-36069790 | Msa0249360:CDS | 45.0% | |
| GAGGATAATGTCAAGTGCTC+AGG | + | chr2_2:36069790-36069809 | Msa0249360:CDS | 45.0% | |
| TAATGTCAAGTGCTCAGGCA+AGG | + | chr2_2:36069795-36069814 | Msa0249360:CDS | 45.0% | |
| ! | GGAGATTTGGTATGTGAAGG+TGG | + | chr2_2:36070020-36070039 | Msa0249360:three_prime_UTR | 45.0% |
| TGCTTCTGTGGGAAGCTTCT+GGG | + | chr2_2:36066640-36066659 | Msa0249360:five_prime_UTR | 50.0% | |
| GTTCTGATTCCGTGGCTTAC+AGG | + | chr2_2:36067386-36067405 | Msa0249360:intron | 50.0% | |
| TGAAGAAGTGGAGCGTGCTT+TGG | + | chr2_2:36067413-36067432 | Msa0249360:CDS | 50.0% | |
| ACCATGCTAAACTGGGTGAC+AGG | + | chr2_2:36067445-36067464 | Msa0249360:CDS | 50.0% | |
| ACCTGTCACCCAGTTTAGCA+TGG | - | chr2_2:36067449-36067468 | None:intergenic | 50.0% | |
| AGGGACTAAGCTGGAATCTG+TGG | - | chr2_2:36067760-36067779 | None:intergenic | 50.0% | |
| ACAGAAGGACCAACGTGTCT+CGG | - | chr2_2:36067822-36067841 | None:intergenic | 50.0% | |
| TATTCTTGGCGGTGAAGACC+TGG | - | chr2_2:36068044-36068063 | None:intergenic | 50.0% | |
| CCTGGTGCTTCTATTCTTGG+CGG | - | chr2_2:36068055-36068074 | None:intergenic | 50.0% | |
| !! | CGCCAAGAATAGAAGCACCA+GGG | + | chr2_2:36068053-36068072 | Msa0249360:CDS | 50.0% |
| !! | GCCAAGAATAGAAGCACCAG+GGG | + | chr2_2:36068054-36068073 | Msa0249360:CDS | 50.0% |
| TCCCCTGGTGCTTCTATTCT+TGG | - | chr2_2:36068058-36068077 | None:intergenic | 50.0% | |
| ! | AGCTGCAGATTCTTTTCCCC+TGG | - | chr2_2:36068073-36068092 | None:intergenic | 50.0% |
| CCTCCTGTGAATAAGTGAGG+AGG | - | chr2_2:36068115-36068134 | None:intergenic | 50.0% | |
| CCTCCTCACTTATTCACAGG+AGG | + | chr2_2:36068112-36068131 | Msa0249360:CDS | 50.0% | |
| ATTCACAGGAGGGAAGGTTG+AGG | + | chr2_2:36068123-36068142 | Msa0249360:CDS | 50.0% | |
| TTCACAGGAGGGAAGGTTGA+GGG | + | chr2_2:36068124-36068143 | Msa0249360:CDS | 50.0% | |
| CCTCACGTTCCTTTACTTCG+TGG | - | chr2_2:36068309-36068328 | None:intergenic | 50.0% | |
| CCACGAAGTAAAGGAACGTG+AGG | + | chr2_2:36068306-36068325 | Msa0249360:CDS | 50.0% | |
| GGGAAAAGGCCACTTCTAAC+TGG | + | chr2_2:36068328-36068347 | Msa0249360:CDS | 50.0% | |
| GTGGCTCCTGGATATTGTGA+CGG | + | chr2_2:36068457-36068476 | Msa0249360:CDS | 50.0% | |
| TGGCTCCTGGATATTGTGAC+GGG | + | chr2_2:36068458-36068477 | Msa0249360:CDS | 50.0% | |
| CGAATCCCGTCACAATATCC+AGG | - | chr2_2:36068466-36068485 | None:intergenic | 50.0% | |
| CAGAATGTGGGAGAACACTG+TGG | + | chr2_2:36068969-36068988 | Msa0249360:CDS | 50.0% | |
| CAGATGCATACTGCTGCTCT+TGG | - | chr2_2:36069384-36069403 | None:intergenic | 50.0% | |
| GCAGCAGTATGCATCTGCAA+AGG | + | chr2_2:36069387-36069406 | Msa0249360:CDS | 50.0% | |
| !! | GACTGGTCTAGGCAGAGAAA+CGG | + | chr2_2:36069586-36069605 | Msa0249360:CDS | 50.0% |
| TCTAGGCAGAGAAACGGACA+AGG | + | chr2_2:36069592-36069611 | Msa0249360:CDS | 50.0% | |
| CTAGGCAGAGAAACGGACAA+GGG | + | chr2_2:36069593-36069612 | Msa0249360:CDS | 50.0% | |
| TCGCAGAAGAACTTCGGCTT+AGG | + | chr2_2:36069629-36069648 | Msa0249360:CDS | 50.0% | |
| TGGAGGGTGATGATATGCAG+AGG | + | chr2_2:36069665-36069684 | Msa0249360:CDS | 50.0% | |
| CTGCTTCTGTGGGAAGCTTC+TGG | + | chr2_2:36066639-36066658 | Msa0249360:five_prime_UTR | 55.0% | |
| GCTTCTGTGGGAAGCTTCTG+GGG | + | chr2_2:36066641-36066660 | Msa0249360:five_prime_UTR | 55.0% | |
| GGAGCGTGCTTTGGCGAAAT+TGG | + | chr2_2:36067422-36067441 | Msa0249360:CDS | 55.0% | |
| GTTAGGCATGATGACACCCG+TGG | + | chr2_2:36067681-36067700 | Msa0249360:intron | 55.0% | |
| !! | CCGCCAAGAATAGAAGCACC+AGG | + | chr2_2:36068052-36068071 | Msa0249360:CDS | 55.0% |
| !! | CTTGGTGTTAAGGTGGCTCC+TGG | + | chr2_2:36068445-36068464 | Msa0249360:CDS | 55.0% |
| GCAGAGAAACGGACAAGGGT+TGG | + | chr2_2:36069597-36069616 | Msa0249360:CDS | 55.0% | |
| TGCTCAGGCAAGGCTGTTGT+TGG | + | chr2_2:36069805-36069824 | Msa0249360:CDS | 55.0% | |
| GCTCAGGCAAGGCTGTTGTT+GGG | + | chr2_2:36069806-36069825 | Msa0249360:CDS | 55.0% | |
| GGGAAGGTTGAGGGAGAGCA+AGG | + | chr2_2:36068133-36068152 | Msa0249360:CDS | 60.0% | |
| TGACGGGATTCGAGTGCGTG+AGG | + | chr2_2:36068474-36068493 | Msa0249360:CDS | 60.0% | |
| GACGGGATTCGAGTGCGTGA+GGG | + | chr2_2:36068475-36068494 | Msa0249360:CDS | 60.0% | |
| CAGGCAAGGCTGTTGTTGGG+TGG | + | chr2_2:36069809-36069828 | Msa0249360:CDS | 60.0% | |
| GCTCGCGGACAAGAAGACGC+AGG | - | chr2_2:36068799-36068818 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 36066484 | 36070236 | 36066484 | ID=Msa0249360;Name=Msa0249360 |
| chr2_2 | mRNA | 36066484 | 36070236 | 36066484 | ID=Msa0249360-mRNA-1;Parent=Msa0249360;Name=Msa0249360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=262|0.83|0.85|1|1|1|7|318|607 |
| chr2_2 | exon | 36066484 | 36066852 | 36066484 | ID=Msa0249360-mRNA-1:exon:11540;Parent=Msa0249360-mRNA-1 |
| chr2_2 | exon | 36067119 | 36067194 | 36067119 | ID=Msa0249360-mRNA-1:exon:11541;Parent=Msa0249360-mRNA-1 |
| chr2_2 | exon | 36067408 | 36067466 | 36067408 | ID=Msa0249360-mRNA-1:exon:11542;Parent=Msa0249360-mRNA-1 |
| chr2_2 | exon | 36068045 | 36068538 | 36068045 | ID=Msa0249360-mRNA-1:exon:11543;Parent=Msa0249360-mRNA-1 |
| chr2_2 | exon | 36068633 | 36068835 | 36068633 | ID=Msa0249360-mRNA-1:exon:11544;Parent=Msa0249360-mRNA-1 |
| chr2_2 | exon | 36068946 | 36069149 | 36068946 | ID=Msa0249360-mRNA-1:exon:11545;Parent=Msa0249360-mRNA-1 |
| chr2_2 | exon | 36069238 | 36070236 | 36069238 | ID=Msa0249360-mRNA-1:exon:11546;Parent=Msa0249360-mRNA-1 |
| chr2_2 | five_prime_UTR | 36066484 | 36066745 | 36066484 | ID=Msa0249360-mRNA-1:five_prime_utr;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36066746 | 36066852 | 36066746 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36067119 | 36067194 | 36067119 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36067408 | 36067466 | 36067408 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36068045 | 36068538 | 36068045 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36068633 | 36068835 | 36068633 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36068946 | 36069149 | 36068946 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | CDS | 36069238 | 36069918 | 36069238 | ID=Msa0249360-mRNA-1:cds;Parent=Msa0249360-mRNA-1 |
| chr2_2 | three_prime_UTR | 36069919 | 36070236 | 36069919 | ID=Msa0249360-mRNA-1:three_prime_utr;Parent=Msa0249360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
