Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287850 | XP_039686491.1 | 97.549 | 612 | 10 | 1 | 1 | 612 | 1 | 607 | 0.0 | 1239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287850 | sp|F4IPM3|CB60E_ARATH | 59.464 | 634 | 192 | 12 | 9 | 612 | 1 | 599 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287850 | A0A072VIC7 | 95.098 | 612 | 11 | 2 | 1 | 612 | 1 | 593 | 0.0 | 1196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010910 | Msa0287850 | 0.810551 | 1.089870e-50 | -8.615850e-47 |
| Msa0206440 | Msa0287850 | 0.933627 | 1.406362e-95 | -8.615850e-47 |
| Msa0218040 | Msa0287850 | 0.800916 | 1.151526e-48 | -8.615850e-47 |
| Msa0249360 | Msa0287850 | 0.980111 | 1.806168e-149 | -8.615850e-47 |
| Msa0258040 | Msa0287850 | 0.801876 | 7.320381e-49 | -8.615850e-47 |
| Msa0287680 | Msa0287850 | 0.802340 | 5.877610e-49 | -8.615850e-47 |
| Msa0287850 | Msa0400420 | 0.806016 | 1.009475e-49 | -8.615850e-47 |
| Msa0287850 | Msa0441600 | 0.811378 | 7.213162e-51 | -8.615850e-47 |
| Msa0287850 | Msa0489120 | 0.828313 | 9.638951e-55 | -8.615850e-47 |
| Msa0287850 | Msa0529670 | 0.831294 | 1.810695e-55 | -8.615850e-47 |
| Msa0287850 | Msa0572750 | 0.810410 | 1.168696e-50 | -8.615850e-47 |
| Msa0287850 | Msa1078550 | 0.806892 | 6.597153e-50 | -8.615850e-47 |
| Msa0287850 | Msa1078560 | 0.801618 | 8.271800e-49 | -8.615850e-47 |
| Msa0287850 | Msa1078660 | 0.821935 | 3.098581e-53 | -8.615850e-47 |
| Msa0287850 | Msa1089960 | 0.807245 | 5.553695e-50 | -8.615850e-47 |
| Msa0287850 | Msa1169380 | 0.816072 | 6.677149e-52 | -8.615850e-47 |
| Msa0287850 | Msa1169460 | 0.804795 | 1.819902e-49 | -8.615850e-47 |
| Msa0287850 | Msa1352590 | 0.819123 | 1.369793e-52 | -8.615850e-47 |
| Msa0287850 | Msa1373070 | 0.835043 | 2.110708e-56 | -8.615850e-47 |
| Msa0287850 | Msa1442940 | 0.909758 | 3.993838e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287850 | MtrunA17_Chr2g0304831 | 95.098 | 612 | 11 | 2 | 1 | 612 | 1 | 593 | 0.0 | 1196 |
| Msa0287850 | MtrunA17_Chr4g0048161 | 52.640 | 644 | 238 | 12 | 8 | 612 | 12 | 627 | 0.0 | 619 |
| Msa0287850 | MtrunA17_Chr2g0281171 | 52.074 | 651 | 249 | 10 | 1 | 612 | 6 | 632 | 0.0 | 611 |
| Msa0287850 | MtrunA17_Chr4g0072691 | 52.006 | 623 | 230 | 10 | 39 | 612 | 3 | 605 | 0.0 | 600 |
| Msa0287850 | MtrunA17_Chr8g0391221 | 43.210 | 405 | 207 | 8 | 11 | 412 | 4 | 388 | 2.41e-101 | 316 |
| Msa0287850 | MtrunA17_Chr6g0484131 | 39.726 | 438 | 232 | 7 | 11 | 434 | 4 | 423 | 1.22e-100 | 315 |
| Msa0287850 | MtrunA17_Chr6g0484111 | 40.000 | 440 | 228 | 8 | 11 | 434 | 4 | 423 | 6.16e-100 | 313 |
| Msa0287850 | MtrunA17_Chr6g0484121 | 39.726 | 438 | 232 | 7 | 11 | 434 | 4 | 423 | 1.86e-98 | 309 |
| Msa0287850 | MtrunA17_Chr4g0059411 | 44.133 | 392 | 191 | 6 | 11 | 401 | 4 | 368 | 2.26e-98 | 310 |
| Msa0287850 | MtrunA17_Chr8g0391211 | 42.469 | 405 | 210 | 8 | 11 | 412 | 75 | 459 | 7.31e-98 | 310 |
| Msa0287850 | MtrunA17_Chr7g0271691 | 33.511 | 376 | 214 | 10 | 49 | 415 | 31 | 379 | 1.51e-53 | 191 |
| Msa0287850 | MtrunA17_Chr7g0271671 | 31.232 | 349 | 217 | 7 | 59 | 403 | 60 | 389 | 3.63e-40 | 154 |
| Msa0287850 | MtrunA17_Chr7g0271681 | 32.803 | 314 | 184 | 8 | 96 | 401 | 6 | 300 | 1.14e-39 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287850 | AT2G24300.3 | 59.346 | 642 | 192 | 13 | 1 | 612 | 1 | 603 | 0.0 | 715 |
| Msa0287850 | AT2G24300.2 | 59.464 | 634 | 192 | 12 | 9 | 612 | 1 | 599 | 0.0 | 714 |
| Msa0287850 | AT4G31000.1 | 58.143 | 614 | 203 | 8 | 1 | 612 | 1 | 562 | 0.0 | 678 |
| Msa0287850 | AT2G24300.1 | 59.201 | 576 | 174 | 10 | 67 | 612 | 8 | 552 | 0.0 | 650 |
| Msa0287850 | AT2G18750.3 | 52.449 | 633 | 251 | 12 | 6 | 612 | 10 | 618 | 0.0 | 595 |
| Msa0287850 | AT2G18750.2 | 52.449 | 633 | 251 | 12 | 6 | 612 | 10 | 618 | 0.0 | 595 |
| Msa0287850 | AT2G18750.1 | 52.449 | 633 | 251 | 12 | 6 | 612 | 10 | 618 | 0.0 | 595 |
| Msa0287850 | AT5G57580.1 | 49.775 | 667 | 247 | 15 | 1 | 609 | 1 | 637 | 0.0 | 593 |
| Msa0287850 | AT4G31000.2 | 52.188 | 617 | 214 | 9 | 1 | 612 | 1 | 541 | 0.0 | 590 |
| Msa0287850 | AT4G25800.1 | 53.311 | 604 | 232 | 11 | 35 | 612 | 16 | 595 | 0.0 | 586 |
| Msa0287850 | AT4G25800.2 | 53.311 | 604 | 232 | 11 | 35 | 612 | 16 | 595 | 0.0 | 586 |
| Msa0287850 | AT5G62570.2 | 42.092 | 392 | 200 | 10 | 41 | 426 | 13 | 383 | 1.10e-93 | 297 |
| Msa0287850 | AT5G62570.1 | 41.878 | 394 | 202 | 10 | 39 | 426 | 26 | 398 | 2.59e-93 | 296 |
| Msa0287850 | AT5G62570.4 | 43.017 | 358 | 179 | 9 | 39 | 392 | 26 | 362 | 2.31e-89 | 282 |
| Msa0287850 | AT1G73805.1 | 38.557 | 485 | 245 | 15 | 11 | 489 | 4 | 441 | 1.27e-85 | 275 |
| Msa0287850 | AT5G26920.3 | 37.432 | 366 | 195 | 10 | 42 | 403 | 28 | 363 | 9.34e-70 | 232 |
| Msa0287850 | AT5G62570.3 | 44.718 | 284 | 133 | 8 | 39 | 319 | 26 | 288 | 2.31e-69 | 227 |
| Msa0287850 | AT5G26920.1 | 37.432 | 366 | 195 | 10 | 42 | 403 | 28 | 363 | 1.86e-68 | 233 |
| Msa0287850 | AT5G26920.2 | 37.158 | 366 | 188 | 11 | 42 | 403 | 28 | 355 | 3.54e-66 | 226 |
Find 161 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTGTGGGAAGCTTCT+TGG | 0.160955 | 2_3:+31168366 | Msa0287850:five_prime_UTR |
| TCCCCTGGTGCTTCTATTCT+TGG | 0.164360 | 2_3:-31169809 | None:intergenic |
| TTTCTCAACTTTATTGTTCT+TGG | 0.176255 | 2_3:-31168483 | None:intergenic |
| TTCTAAATTTAGATATTTAT+TGG | 0.195629 | 2_3:+31168430 | Msa0287850:five_prime_UTR |
| GAGGCATTCTTGTTCTAAAA+TGG | 0.234537 | 2_3:-31169847 | None:intergenic |
| TTAAGCTTAAAGCAGCTTTA+AGG | 0.234780 | 2_3:+31171587 | Msa0287850:CDS |
| ATTAATGAAGGAGCTAATTT+TGG | 0.248045 | 2_3:+31171454 | Msa0287850:CDS |
| CTAGCTAAACCAGGTAGTTT+TGG | 0.249092 | 2_3:-31168572 | None:intergenic |
| GCTTCTGTGGGAAGCTTCTT+GGG | 0.251062 | 2_3:+31168367 | Msa0287850:five_prime_UTR |
| TTTAACTTCGCAACTGATTC+TGG | 0.253100 | 2_3:-31169968 | None:intergenic |
| TAATAATTACCACCAATTTC+AGG | 0.256767 | 2_3:-31171310 | None:intergenic |
| GAAATTAGACCATGCTAAAC+TGG | 0.287354 | 2_3:+31169191 | Msa0287850:CDS |
| ACCTGACATGTTGTAATTCA+TGG | 0.302589 | 2_3:-31171278 | None:intergenic |
| TGAACAACATTTCCCGTGTT+TGG | 0.304757 | 2_3:-31169938 | None:intergenic |
| CTGCTTTGCATGATGAAGTT+TGG | 0.307314 | 2_3:+31170450 | Msa0287850:CDS |
| TGTAGATTCCTTGGTGAAAA+AGG | 0.319990 | 2_3:+31170997 | Msa0287850:CDS |
| TCTAAATTTAGATATTTATT+GGG | 0.335094 | 2_3:+31168431 | Msa0287850:five_prime_UTR |
| GCAAAGACTCTGCTCATCTT+TGG | 0.340248 | 2_3:+31168905 | Msa0287850:CDS |
| TGTTTGATATATTAGTTTGT+AGG | 0.351642 | 2_3:-31168260 | None:intergenic |
| AGGATGATGACAAAATAATA+TGG | 0.355307 | 2_3:-31168240 | None:intergenic |
| GGTGATAATAATCCTGAAAT+TGG | 0.356003 | 2_3:+31171298 | Msa0287850:CDS |
| ATTTAGATATTTATTGGGAT+TGG | 0.358832 | 2_3:+31168436 | Msa0287850:five_prime_UTR |
| ATGAGGAAATTGATGATGAT+TGG | 0.358972 | 2_3:+31170017 | Msa0287850:CDS |
| TGAGTTTAAATGCTTGAAAT+CGG | 0.365106 | 2_3:+31171670 | Msa0287850:exon |
| ACTTGGTCTATTCATAAGAT+AGG | 0.372823 | 2_3:-31168407 | None:intergenic |
| TAACACCAAGTCTAAACTTT+CGG | 0.374326 | 2_3:-31170186 | None:intergenic |
| TCTTATCCAGCTAGAATTAT+CGG | 0.375347 | 2_3:-31170161 | None:intergenic |
| GGGAAAAGGCCACTTCTAAC+TGG | 0.383127 | 2_3:+31170082 | Msa0287850:CDS |
| AAGGAAGGAGTAGGAACATT+AGG | 0.389807 | 2_3:+31170124 | Msa0287850:CDS |
| ATATTTATTGGGATTGGATA+AGG | 0.396579 | 2_3:+31168442 | Msa0287850:five_prime_UTR |
| ATTGGATAAGGTTCTAGAAA+TGG | 0.399978 | 2_3:+31168454 | Msa0287850:exon |
| GCATGATGAAGTTTGGAGAT+TGG | 0.410980 | 2_3:+31170457 | Msa0287850:CDS |
| TAATATTTAATCTCATTGTA+TGG | 0.412134 | 2_3:-31171850 | None:intergenic |
| CCTCACGTTCCTTTACTTCG+TGG | 0.416570 | 2_3:-31170060 | None:intergenic |
| TTCTTTGACTAATTCCAAAA+GGG | 0.417389 | 2_3:+31171069 | Msa0287850:CDS |
| CAGATGCATACTGCTGCTCT+TGG | 0.421224 | 2_3:-31171135 | None:intergenic |
| AATATCTAAATTTAGAAACT+TGG | 0.424064 | 2_3:-31168424 | None:intergenic |
| ATTGGTGGTAATTATTATCA+TGG | 0.424691 | 2_3:+31171316 | Msa0287850:CDS |
| TGCTCAGGCAAGGCTGTTGT+TGG | 0.429293 | 2_3:+31171559 | Msa0287850:CDS |
| TGAAGAAGTGGAGCGTGCTT+TGG | 0.435844 | 2_3:+31169167 | Msa0287850:CDS |
| ATTCTTTGACTAATTCCAAA+AGG | 0.441002 | 2_3:+31171068 | Msa0287850:CDS |
| TAAAGGAACGTGAGGGGAAA+AGG | 0.446042 | 2_3:+31170068 | Msa0287850:CDS |
| TCGCAGAAGAACTTCGGCTT+AGG | 0.447943 | 2_3:+31171383 | Msa0287850:CDS |
| ATCACTCACTTCAAATCAAA+AGG | 0.454320 | 2_3:+31170882 | Msa0287850:CDS |
| AGTCATCCATGTTGTCTTGT+TGG | 0.456149 | 2_3:+31169913 | Msa0287850:CDS |
| CCTGGTGCTTCTATTCTTGG+CGG | 0.458356 | 2_3:-31169806 | None:intergenic |
| ATGTTGTAATTCATGGTTCC+TGG | 0.461025 | 2_3:-31171271 | None:intergenic |
| TACCATCTGATAATCCGAAC+TGG | 0.468563 | 2_3:-31171227 | None:intergenic |
| AAAGTTTAGACTTGGTGTTA+AGG | 0.469299 | 2_3:+31170189 | Msa0287850:CDS |
| CTTGGTGTTAAGGTGGCTCC+TGG | 0.469576 | 2_3:+31170199 | Msa0287850:CDS |
| GTGATTCTAAAGAAAAGAAC+TGG | 0.470764 | 2_3:-31170864 | None:intergenic |
| TCAATACAGGTACTTGGTAG+TGG | 0.472613 | 2_3:+31170691 | Msa0287850:intron |
| CTCCATCATATTCTATGACT+TGG | 0.480405 | 2_3:-31171036 | None:intergenic |
| ATTATCATGGAGACTGGTCT+AGG | 0.480685 | 2_3:+31171329 | Msa0287850:CDS |
| GCTTAGGAGTTCGCAAATGT+TGG | 0.483183 | 2_3:+31171399 | Msa0287850:CDS |
| TTCACAGGAGGGAAGGTTGA+GGG | 0.486109 | 2_3:+31169878 | Msa0287850:CDS |
| TCAATATGAAGGCTATATTG+AGG | 0.486113 | 2_3:+31170376 | Msa0287850:intron |
| CTTTGAAAGCCACGAAGTAA+AGG | 0.491383 | 2_3:+31170051 | Msa0287850:CDS |
| CTTTCACCGATAATTCTAGC+TGG | 0.492240 | 2_3:+31170155 | Msa0287850:CDS |
| AAACAGAAACAAAGTAAGAA+AGG | 0.501330 | 2_3:-31168297 | None:intergenic |
| GGGAAGGTTGAGGGAGAGCA+AGG | 0.502361 | 2_3:+31169887 | Msa0287850:CDS |
| GCTTCTTTGACTGAGTAAGA+TGG | 0.506593 | 2_3:-31168550 | None:intergenic |
| AGCTTAAAGCAGCTTTAAGG+TGG | 0.507495 | 2_3:+31171590 | Msa0287850:CDS |
| ACGGGAAATGTTGTTCAAGT+TGG | 0.508647 | 2_3:+31169944 | Msa0287850:CDS |
| TTGTTCAATACTGCAGTTGG+TGG | 0.508801 | 2_3:-31171826 | None:intergenic |
| CAGGCAAGGCTGTTGTTGGG+TGG | 0.514153 | 2_3:+31171563 | Msa0287850:CDS |
| ACCATGCTAAACTGGGTGAC+AGG | 0.518344 | 2_3:+31169199 | Msa0287850:CDS |
| CAAAACTACCTGGTTTAGCT+AGG | 0.519085 | 2_3:+31168573 | Msa0287850:CDS |
| CGAATCCCGTCACAATATCC+AGG | 0.519800 | 2_3:-31170217 | None:intergenic |
| TAGGAGTTCGCAAATGTTGG+AGG | 0.522224 | 2_3:+31171402 | Msa0287850:CDS |
| GGAAATTTGGTATGTGAAGG+TGG | 0.522838 | 2_3:+31171777 | Msa0287850:three_prime_UTR |
| TGTAATTGTGGAAGCATTGA+AGG | 0.522949 | 2_3:+31168872 | Msa0287850:CDS |
| GTAATTATTATCATGGAGAC+TGG | 0.523399 | 2_3:+31171323 | Msa0287850:CDS |
| CAAACTTCATCATGCAAAGC+AGG | 0.525398 | 2_3:-31170449 | None:intergenic |
| CATGCTAAGACATGTGTGTT+GGG | 0.526739 | 2_3:+31170748 | Msa0287850:CDS |
| ACCATGAATTACAACATGTC+AGG | 0.527787 | 2_3:+31171277 | Msa0287850:CDS |
| GAGGATAATGTCAAGTGCTC+AGG | 0.527975 | 2_3:+31171544 | Msa0287850:CDS |
| GCAGAGAAACGGACAAGGGT+TGG | 0.529494 | 2_3:+31171351 | Msa0287850:CDS |
| GCAGATGTCTGTAGATTCCT+TGG | 0.531398 | 2_3:+31170988 | Msa0287850:intron |
| TTACTTAAGACTATTAATGA+AGG | 0.533466 | 2_3:+31171442 | Msa0287850:CDS |
| GCTCAGGCAAGGCTGTTGTT+GGG | 0.534129 | 2_3:+31171560 | Msa0287850:CDS |
| ATTCACAGGAGGGAAGGTTG+AGG | 0.534510 | 2_3:+31169877 | Msa0287850:CDS |
| CAGCAGTATGCATCTGCAAA+GGG | 0.538227 | 2_3:+31171142 | Msa0287850:CDS |
| CCGCCAAGAATAGAAGCACC+AGG | 0.541056 | 2_3:+31169806 | Msa0287850:CDS |
| AGATTTGCAAGTTAGTCTAA+AGG | 0.541446 | 2_3:+31170105 | Msa0287850:CDS |
| GGTTTGTTCAATACTGCAGT+TGG | 0.541973 | 2_3:-31171829 | None:intergenic |
| CTTCTGTGGGAAGCTTCTTG+GGG | 0.543919 | 2_3:+31168368 | Msa0287850:five_prime_UTR |
| TCTATGATCTTTAACAGCAA+AGG | 0.544423 | 2_3:-31170263 | None:intergenic |
| CTTACACTTCTTAATTTCTG+TGG | 0.544648 | 2_3:-31170572 | None:intergenic |
| GACTGGTCTAGGCAGAGAAA+CGG | 0.545642 | 2_3:+31171340 | Msa0287850:CDS |
| GCTTAAAGCAGCTTTAAGGT+GGG | 0.551907 | 2_3:+31171591 | Msa0287850:CDS |
| AGTTCGGATTATCAGATGGT+AGG | 0.552487 | 2_3:+31171229 | Msa0287850:CDS |
| GATAATAATCCTGAAATTGG+TGG | 0.552833 | 2_3:+31171301 | Msa0287850:CDS |
| TGGCTCCTGGATATTGTGAC+GGG | 0.555314 | 2_3:+31170212 | Msa0287850:CDS |
| TTCTTAATTTCTGTGGCTCG+CGG | 0.555637 | 2_3:-31170565 | None:intergenic |
| GACCAAGTCATAGAATATGA+TGG | 0.555949 | 2_3:+31171034 | Msa0287850:CDS |
| ATGCCTCCTCACTTATTCAC+AGG | 0.560024 | 2_3:+31169863 | Msa0287850:CDS |
| CTAAGAGGTCTCATTGCTGA+TGG | 0.560083 | 2_3:+31170841 | Msa0287850:CDS |
| GTTCGGATTATCAGATGGTA+GGG | 0.561192 | 2_3:+31171230 | Msa0287850:CDS |
| AGAAGCCGAAAGTTTAGACT+TGG | 0.563077 | 2_3:+31170181 | Msa0287850:CDS |
| GAAGTTAAATGTTGTTGTGC+TGG | 0.563996 | 2_3:+31169982 | Msa0287850:CDS |
| ATGAAGTTTGGAGATTGGAT+CGG | 0.564012 | 2_3:+31170462 | Msa0287850:CDS |
| TCACTTATTCACAGGAGGGA+AGG | 0.564488 | 2_3:+31169871 | Msa0287850:CDS |
| ACATTGTCGCAGAAGAACTT+CGG | 0.565117 | 2_3:+31171377 | Msa0287850:CDS |
| TGTCTTGTTGGATCCAAACA+CGG | 0.566446 | 2_3:+31169925 | Msa0287850:CDS |
| GAATAACTACTCATCCAGTT+CGG | 0.566553 | 2_3:+31171213 | Msa0287850:CDS |
| GTTTAGACTTGGTGTTAAGG+TGG | 0.566982 | 2_3:+31170192 | Msa0287850:CDS |
| GTTAGTCTAAAGGAAGGAGT+AGG | 0.569301 | 2_3:+31170115 | Msa0287850:CDS |
| CTTAAAGCAGCTTTAAGGTG+GGG | 0.570067 | 2_3:+31171592 | Msa0287850:CDS |
| TTGCAAGTTAGTCTAAAGGA+AGG | 0.570603 | 2_3:+31170109 | Msa0287850:CDS |
| TGCAAATCTCCAGTTAGAAG+TGG | 0.579936 | 2_3:-31170091 | None:intergenic |
| TGACGGGATTCGAGTGCGTG+AGG | 0.580615 | 2_3:+31170228 | Msa0287850:CDS |
| GTGGAATGTCAAACAGAATG+TGG | 0.581489 | 2_3:+31170710 | Msa0287850:CDS |
| TCAAAGAAGCCAAAACTACC+TGG | 0.581861 | 2_3:+31168563 | Msa0287850:CDS |
| GTCTTGTTGGATCCAAACAC+GGG | 0.582870 | 2_3:+31169926 | Msa0287850:CDS |
| GCAGCAGTATGCATCTGCAA+AGG | 0.584416 | 2_3:+31171141 | Msa0287850:CDS |
| TTTGCTGTTAAAGATCATAG+AGG | 0.584829 | 2_3:+31170265 | Msa0287850:CDS |
| GCAAATGTACAGTGTAATTG+TGG | 0.585229 | 2_3:+31168860 | Msa0287850:intron |
| TCTTTGACTAATTCCAAAAG+GGG | 0.586778 | 2_3:+31171070 | Msa0287850:CDS |
| CTTACAGGTAAGTGAAGAAG+TGG | 0.588186 | 2_3:+31169155 | Msa0287850:intron |
| TTATGATGATGTAGCTAATG+AGG | 0.592406 | 2_3:+31168511 | Msa0287850:CDS |
| GCATGCTAAGACATGTGTGT+TGG | 0.592550 | 2_3:+31170747 | Msa0287850:CDS |
| GTGGCTCCTGGATATTGTGA+CGG | 0.594325 | 2_3:+31170211 | Msa0287850:CDS |
| GTATGCATCTGCAAAGGGAA+GGG | 0.595195 | 2_3:+31171147 | Msa0287850:CDS |
| AGTATGCATCTGCAAAGGGA+AGG | 0.595436 | 2_3:+31171146 | Msa0287850:CDS |
| TTAAATGTTGTTGTGCTGGA+AGG | 0.596826 | 2_3:+31169986 | Msa0287850:CDS |
| ACTGATGAAACTCATAGCAC+TGG | 0.598016 | 2_3:+31170793 | Msa0287850:CDS |
| AAATTAGACCATGCTAAACT+GGG | 0.600527 | 2_3:+31169192 | Msa0287850:CDS |
| ACCTGTCACCCAGTTTAGCA+TGG | 0.604323 | 2_3:-31169200 | None:intergenic |
| AAGACGCAGGAAATCTTCTA+CGG | 0.608096 | 2_3:-31170537 | None:intergenic |
| TAATGTCAAGTGCTCAGGCA+AGG | 0.608603 | 2_3:+31171549 | Msa0287850:CDS |
| TTTGGAAATTTGGTATGTGA+AGG | 0.608737 | 2_3:+31171774 | Msa0287850:three_prime_UTR |
| CCTCCTCACTTATTCACAGG+AGG | 0.610687 | 2_3:+31169866 | Msa0287850:CDS |
| GACGGGATTCGAGTGCGTGA+GGG | 0.611142 | 2_3:+31170229 | Msa0287850:CDS |
| TTGAAATACCTAGCTAAACC+AGG | 0.612518 | 2_3:-31168581 | None:intergenic |
| ATCCAGTTCGGATTATCAGA+TGG | 0.612546 | 2_3:+31171225 | Msa0287850:CDS |
| GAGATTGGATCGGATAGCAA+AGG | 0.612915 | 2_3:+31170472 | Msa0287850:CDS |
| TCTAGGCAGAGAAACGGACA+AGG | 0.618669 | 2_3:+31171346 | Msa0287850:CDS |
| TTCCCTCCTGTGAATAAGTG+AGG | 0.620654 | 2_3:-31169869 | None:intergenic |
| CCACGAAGTAAAGGAACGTG+AGG | 0.622907 | 2_3:+31170060 | Msa0287850:CDS |
| TGGAATGTCAAACAGAATGT+GGG | 0.623286 | 2_3:+31170711 | Msa0287850:CDS |
| AGGAGTTCGCAAATGTTGGA+GGG | 0.625466 | 2_3:+31171403 | Msa0287850:CDS |
| CTCCTCACTTATTCACAGGA+GGG | 0.626882 | 2_3:+31169867 | Msa0287850:CDS |
| AGAAATCTATAAAAGACTAG+AGG | 0.631871 | 2_3:+31171733 | Msa0287850:three_prime_UTR |
| AACAACATATATGAGCTAAG+AGG | 0.636409 | 2_3:+31170826 | Msa0287850:CDS |
| CACGAAGTAAAGGAACGTGA+GGG | 0.637636 | 2_3:+31170061 | Msa0287850:CDS |
| CGCCAAGAATAGAAGCACCA+GGG | 0.641290 | 2_3:+31169807 | Msa0287850:CDS |
| GCCAAGAATAGAAGCACCAG+GGG | 0.641379 | 2_3:+31169808 | Msa0287850:CDS |
| ACATCACAAATAGCATTACC+AGG | 0.641397 | 2_3:+31171253 | Msa0287850:CDS |
| ACTTCATCATGCAAAGCAGG+TGG | 0.646109 | 2_3:-31170446 | None:intergenic |
| AATTGTGGAAGCATTGAAGG+TGG | 0.654590 | 2_3:+31168875 | Msa0287850:CDS |
| TTGGATCGGATAGCAAAGGA+TGG | 0.661274 | 2_3:+31170476 | Msa0287850:CDS |
| CTGAACGAATGATACATCTG+AGG | 0.671246 | 2_3:-31171520 | None:intergenic |
| TTGGATCCAACAAGACAACA+TGG | 0.676027 | 2_3:-31169919 | None:intergenic |
| CCTCCTGTGAATAAGTGAGG+AGG | 0.676250 | 2_3:-31169866 | None:intergenic |
| GCTCGCGGACAAGAAGACGC+AGG | 0.689588 | 2_3:-31170550 | None:intergenic |
| ACGAAGTAAAGGAACGTGAG+GGG | 0.705159 | 2_3:+31170062 | Msa0287850:CDS |
| GATGTATCATTCGTTCAGCG+AGG | 0.717492 | 2_3:+31171525 | Msa0287850:CDS |
| CAGAATGTGGGAGAACACTG+TGG | 0.727384 | 2_3:+31170723 | Msa0287850:CDS |
| CTAGGCAGAGAAACGGACAA+GGG | 0.731036 | 2_3:+31171347 | Msa0287850:CDS |
| TGGAGGGTGATGATATGCAG+AGG | 0.746794 | 2_3:+31171419 | Msa0287850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTAAATTTAGATATTTAT+TGG | + | chr2_3:31168430-31168449 | Msa0287850:five_prime_UTR | 10.0% |
| !! | TCTAAATTTAGATATTTATT+GGG | + | chr2_3:31168431-31168450 | Msa0287850:five_prime_UTR | 10.0% |
| !! | CTTATAAATTAAAATACTAT+AGG | - | chr2_3:31168637-31168656 | None:intergenic | 10.0% |
| !!! | AATTATTATTTATTTTCGAT+AGG | - | chr2_3:31169408-31169427 | None:intergenic | 10.0% |
| !!! | ATGAAAAAAAAAAAATGTTT+TGG | + | chr2_3:31171756-31171775 | Msa0287850:three_prime_UTR | 10.0% |
| !! | AATATCTAAATTTAGAAACT+TGG | - | chr2_3:31168427-31168446 | None:intergenic | 15.0% |
| !! | TTTAATAGAATCTCATATAA+TGG | + | chr2_3:31168732-31168751 | Msa0287850:intron | 15.0% |
| !! | AATAATAATTGATATCTGTT+AGG | + | chr2_3:31169418-31169437 | Msa0287850:intron | 15.0% |
| !!! | AAAATTGTTTGTTTTTCATA+GGG | - | chr2_3:31169533-31169552 | None:intergenic | 15.0% |
| !!! | AAAAATTGTTTGTTTTTCAT+AGG | - | chr2_3:31169534-31169553 | None:intergenic | 15.0% |
| !!! | AAAAAAATGTTTTGGAAATT+TGG | + | chr2_3:31171764-31171783 | Msa0287850:three_prime_UTR | 15.0% |
| !! | TAATATTTAATCTCATTGTA+TGG | - | chr2_3:31171853-31171872 | None:intergenic | 15.0% |
| !!! | TGTTTGATATATTAGTTTGT+AGG | - | chr2_3:31168263-31168282 | None:intergenic | 20.0% |
| !!! | TTTATCAACTCAAACTTTTA+AGG | + | chr2_3:31168317-31168336 | Msa0287850:five_prime_UTR | 20.0% |
| !! | ATTTAGATATTTATTGGGAT+TGG | + | chr2_3:31168436-31168455 | Msa0287850:five_prime_UTR | 20.0% |
| !! | TCTATTAAATTCAACTTAGA+TGG | - | chr2_3:31168721-31168740 | None:intergenic | 20.0% |
| !! | TAATACATGTATATAAGTTG+TGG | - | chr2_3:31169725-31169744 | None:intergenic | 20.0% |
| !!! | CAACAATTTTTTCAATATGA+AGG | + | chr2_3:31170365-31170384 | Msa0287850:intron | 20.0% |
| !! | TTACTTAAGACTATTAATGA+AGG | + | chr2_3:31171442-31171461 | Msa0287850:CDS | 20.0% |
| ! | AGGATGATGACAAAATAATA+TGG | - | chr2_3:31168243-31168262 | None:intergenic | 25.0% |
| ! | AAACAGAAACAAAGTAAGAA+AGG | - | chr2_3:31168300-31168319 | None:intergenic | 25.0% |
| ! | ATATTTATTGGGATTGGATA+AGG | + | chr2_3:31168442-31168461 | Msa0287850:five_prime_UTR | 25.0% |
| ! | TTTCTCAACTTTATTGTTCT+TGG | - | chr2_3:31168486-31168505 | None:intergenic | 25.0% |
| ! | TTCTTTCTACTAATGTAATG+TGG | + | chr2_3:31168666-31168685 | Msa0287850:intron | 25.0% |
| ! | TATATAAGTCAAGGTAACAT+TGG | + | chr2_3:31168762-31168781 | Msa0287850:intron | 25.0% |
| ! | TTAAACTGCTAACACAATAT+AGG | - | chr2_3:31168967-31168986 | None:intergenic | 25.0% |
| ! | TTGTGAAATATTCAAGCAAA+GGG | - | chr2_3:31169033-31169052 | None:intergenic | 25.0% |
| ! | TTTGTGAAATATTCAAGCAA+AGG | - | chr2_3:31169034-31169053 | None:intergenic | 25.0% |
| ! | TGCTTGAATATTTCACAAAA+AGG | + | chr2_3:31169035-31169054 | Msa0287850:intron | 25.0% |
| ! | AATTTACATCATACCGTTAA+GGG | - | chr2_3:31169351-31169370 | None:intergenic | 25.0% |
| ! | TAATTTACATCATACCGTTA+AGG | - | chr2_3:31169352-31169371 | None:intergenic | 25.0% |
| !!! | CTCTAATCATATTTTTTCGA+AGG | + | chr2_3:31170636-31170655 | Msa0287850:intron | 25.0% |
| ! | ATTCTTTGACTAATTCCAAA+AGG | + | chr2_3:31171068-31171087 | Msa0287850:CDS | 25.0% |
| ! | TTCTTTGACTAATTCCAAAA+GGG | + | chr2_3:31171069-31171088 | Msa0287850:CDS | 25.0% |
| !!! | TTGCAAATGTTGATTTTGTT+TGG | - | chr2_3:31171188-31171207 | None:intergenic | 25.0% |
| ! | TAATAATTACCACCAATTTC+AGG | - | chr2_3:31171313-31171332 | None:intergenic | 25.0% |
| !! | ATTGGTGGTAATTATTATCA+TGG | + | chr2_3:31171316-31171335 | Msa0287850:CDS | 25.0% |
| !! | ATTAATGAAGGAGCTAATTT+TGG | + | chr2_3:31171454-31171473 | Msa0287850:CDS | 25.0% |
| ! | TGAGTTTAAATGCTTGAAAT+CGG | + | chr2_3:31171670-31171689 | Msa0287850:exon | 25.0% |
| ! | AGAAATCTATAAAAGACTAG+AGG | + | chr2_3:31171733-31171752 | Msa0287850:three_prime_UTR | 25.0% |
| CAGAAGCAGAAAAAAAATCT+TGG | - | chr2_3:31168354-31168373 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTTCTGCTTCTG+TGG | + | chr2_3:31168354-31168373 | Msa0287850:five_prime_UTR | 30.0% |
| !!! | GATTTTTTTTCTGCTTCTGT+GGG | + | chr2_3:31168355-31168374 | Msa0287850:five_prime_UTR | 30.0% |
| ACTTGGTCTATTCATAAGAT+AGG | - | chr2_3:31168410-31168429 | None:intergenic | 30.0% | |
| !! | ATTGGATAAGGTTCTAGAAA+TGG | + | chr2_3:31168454-31168473 | Msa0287850:exon | 30.0% |
| ! | TTATGATGATGTAGCTAATG+AGG | + | chr2_3:31168511-31168530 | Msa0287850:CDS | 30.0% |
| GGAATCTTGTATATAAGTCA+AGG | + | chr2_3:31168753-31168772 | Msa0287850:intron | 30.0% | |
| GGTTATCAAATCAAAGAACA+TGG | + | chr2_3:31169056-31169075 | Msa0287850:intron | 30.0% | |
| AAATTAGACCATGCTAAACT+GGG | + | chr2_3:31169192-31169211 | Msa0287850:CDS | 30.0% | |
| TCAGAATTCTAATCTGACTA+GGG | - | chr2_3:31169231-31169250 | None:intergenic | 30.0% | |
| TTCAGAATTCTAATCTGACT+AGG | - | chr2_3:31169232-31169251 | None:intergenic | 30.0% | |
| CGGTATGATGTAAATTAGAA+TGG | + | chr2_3:31169355-31169374 | Msa0287850:intron | 30.0% | |
| TCTCAACAACCTAAAATTTC+AGG | + | chr2_3:31169745-31169764 | Msa0287850:intron | 30.0% | |
| CAACTAAAATGTATCAGAGA+CGG | - | chr2_3:31169773-31169792 | None:intergenic | 30.0% | |
| !! | ATGAGGAAATTGATGATGAT+TGG | + | chr2_3:31170017-31170036 | Msa0287850:CDS | 30.0% |
| ! | AGATTTGCAAGTTAGTCTAA+AGG | + | chr2_3:31170105-31170124 | Msa0287850:CDS | 30.0% |
| TCTTATCCAGCTAGAATTAT+CGG | - | chr2_3:31170164-31170183 | None:intergenic | 30.0% | |
| TAACACCAAGTCTAAACTTT+CGG | - | chr2_3:31170189-31170208 | None:intergenic | 30.0% | |
| !! | AAAGTTTAGACTTGGTGTTA+AGG | + | chr2_3:31170189-31170208 | Msa0287850:CDS | 30.0% |
| TCTATGATCTTTAACAGCAA+AGG | - | chr2_3:31170266-31170285 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTAAAGATCATAG+AGG | + | chr2_3:31170265-31170284 | Msa0287850:CDS | 30.0% |
| ATATAGTAGAGTAAGAACGA+AGG | + | chr2_3:31170342-31170361 | Msa0287850:intron | 30.0% | |
| TCAATATGAAGGCTATATTG+AGG | + | chr2_3:31170376-31170395 | Msa0287850:intron | 30.0% | |
| CTTACACTTCTTAATTTCTG+TGG | - | chr2_3:31170575-31170594 | None:intergenic | 30.0% | |
| AACAACATATATGAGCTAAG+AGG | + | chr2_3:31170826-31170845 | Msa0287850:CDS | 30.0% | |
| ! | GTGATTCTAAAGAAAAGAAC+TGG | - | chr2_3:31170867-31170886 | None:intergenic | 30.0% |
| ATCACTCACTTCAAATCAAA+AGG | + | chr2_3:31170882-31170901 | Msa0287850:CDS | 30.0% | |
| ! | TGAAAAAGGCGTATGATAAT+TGG | + | chr2_3:31171011-31171030 | Msa0287850:CDS | 30.0% |
| ! | GAAAAAGGCGTATGATAATT+GGG | + | chr2_3:31171012-31171031 | Msa0287850:CDS | 30.0% |
| TCTTTGACTAATTCCAAAAG+GGG | + | chr2_3:31171070-31171089 | Msa0287850:CDS | 30.0% | |
| GGTGATAATAATCCTGAAAT+TGG | + | chr2_3:31171298-31171317 | Msa0287850:CDS | 30.0% | |
| GATAATAATCCTGAAATTGG+TGG | + | chr2_3:31171301-31171320 | Msa0287850:CDS | 30.0% | |
| GTAATTATTATCATGGAGAC+TGG | + | chr2_3:31171323-31171342 | Msa0287850:CDS | 30.0% | |
| TTAAGCTTAAAGCAGCTTTA+AGG | + | chr2_3:31171587-31171606 | Msa0287850:CDS | 30.0% | |
| TTTGGAAATTTGGTATGTGA+AGG | + | chr2_3:31171774-31171793 | Msa0287850:three_prime_UTR | 30.0% | |
| TTGAAATACCTAGCTAAACC+AGG | - | chr2_3:31168584-31168603 | None:intergenic | 35.0% | |
| GCAAATGTACAGTGTAATTG+TGG | + | chr2_3:31168860-31168879 | Msa0287850:intron | 35.0% | |
| !! | TGTAATTGTGGAAGCATTGA+AGG | + | chr2_3:31168872-31168891 | Msa0287850:CDS | 35.0% |
| !! | CTCACAATTTTTCTGAGAAG+AGG | - | chr2_3:31168933-31168952 | None:intergenic | 35.0% |
| GGGTCTATTATTGCATAGAA+CGG | - | chr2_3:31169013-31169032 | None:intergenic | 35.0% | |
| GAAATTAGACCATGCTAAAC+TGG | + | chr2_3:31169191-31169210 | Msa0287850:CDS | 35.0% | |
| ATATTGCGTACATTCATCCA+CGG | - | chr2_3:31169455-31169474 | None:intergenic | 35.0% | |
| !!! | CTGGAATCTGTGGTTTTTTT+AGG | - | chr2_3:31169504-31169523 | None:intergenic | 35.0% |
| AAAAATAAACCGAGACACGT+TGG | + | chr2_3:31169564-31169583 | Msa0287850:intron | 35.0% | |
| TGTGTTGAAAACTTGACAGA+AGG | - | chr2_3:31169591-31169610 | None:intergenic | 35.0% | |
| !!! | TGATACATTTTAGTTGTGCC+AGG | + | chr2_3:31169777-31169796 | Msa0287850:intron | 35.0% |
| !! | GAGGCATTCTTGTTCTAAAA+TGG | - | chr2_3:31169850-31169869 | None:intergenic | 35.0% |
| ! | TTTAACTTCGCAACTGATTC+TGG | - | chr2_3:31169971-31169990 | None:intergenic | 35.0% |
| GAAGTTAAATGTTGTTGTGC+TGG | + | chr2_3:31169982-31170001 | Msa0287850:CDS | 35.0% | |
| TTAAATGTTGTTGTGCTGGA+AGG | + | chr2_3:31169986-31170005 | Msa0287850:CDS | 35.0% | |
| ! | TTGCAAGTTAGTCTAAAGGA+AGG | + | chr2_3:31170109-31170128 | Msa0287850:CDS | 35.0% |
| ATGAAGTTTGGAGATTGGAT+CGG | + | chr2_3:31170462-31170481 | Msa0287850:CDS | 35.0% | |
| ATGATTAGAGAAGAGTGATG+TGG | - | chr2_3:31170626-31170645 | None:intergenic | 35.0% | |
| AAGTACCTGTATTGAAAAGG+TGG | - | chr2_3:31170686-31170705 | None:intergenic | 35.0% | |
| ! | ACCTTTTCAATACAGGTACT+TGG | + | chr2_3:31170685-31170704 | Msa0287850:intron | 35.0% |
| ACCAAGTACCTGTATTGAAA+AGG | - | chr2_3:31170689-31170708 | None:intergenic | 35.0% | |
| TGGAATGTCAAACAGAATGT+GGG | + | chr2_3:31170711-31170730 | Msa0287850:CDS | 35.0% | |
| TGTAGATTCCTTGGTGAAAA+AGG | + | chr2_3:31170997-31171016 | Msa0287850:CDS | 35.0% | |
| GACCAAGTCATAGAATATGA+TGG | + | chr2_3:31171034-31171053 | Msa0287850:CDS | 35.0% | |
| CTCCATCATATTCTATGACT+TGG | - | chr2_3:31171039-31171058 | None:intergenic | 35.0% | |
| !! | TACAGATTTTGATCCCCTTT+TGG | - | chr2_3:31171086-31171105 | None:intergenic | 35.0% |
| GAATAACTACTCATCCAGTT+CGG | + | chr2_3:31171213-31171232 | Msa0287850:CDS | 35.0% | |
| ACATCACAAATAGCATTACC+AGG | + | chr2_3:31171253-31171272 | Msa0287850:CDS | 35.0% | |
| ATGTTGTAATTCATGGTTCC+TGG | - | chr2_3:31171274-31171293 | None:intergenic | 35.0% | |
| ACCATGAATTACAACATGTC+AGG | + | chr2_3:31171277-31171296 | Msa0287850:CDS | 35.0% | |
| ACCTGACATGTTGTAATTCA+TGG | - | chr2_3:31171281-31171300 | None:intergenic | 35.0% | |
| GCTTCTTTGACTGAGTAAGA+TGG | - | chr2_3:31168553-31168572 | None:intergenic | 40.0% | |
| TCAAAGAAGCCAAAACTACC+TGG | + | chr2_3:31168563-31168582 | Msa0287850:CDS | 40.0% | |
| ! | CTAGCTAAACCAGGTAGTTT+TGG | - | chr2_3:31168575-31168594 | None:intergenic | 40.0% |
| CAAAACTACCTGGTTTAGCT+AGG | + | chr2_3:31168573-31168592 | Msa0287850:CDS | 40.0% | |
| !! | AATTGTGGAAGCATTGAAGG+TGG | + | chr2_3:31168875-31168894 | Msa0287850:CDS | 40.0% |
| AGTTAATCGTTCTGATTCCG+TGG | + | chr2_3:31169132-31169151 | Msa0287850:intron | 40.0% | |
| CTTACAGGTAAGTGAAGAAG+TGG | + | chr2_3:31169155-31169174 | Msa0287850:intron | 40.0% | |
| TGATCACATGTAGCCCTTAA+CGG | + | chr2_3:31169335-31169354 | Msa0287850:intron | 40.0% | |
| TATTGCGTACATTCATCCAC+GGG | - | chr2_3:31169454-31169473 | None:intergenic | 40.0% | |
| ! | GTTTTTCATAGGGACTAAGC+TGG | - | chr2_3:31169523-31169542 | None:intergenic | 40.0% |
| ! | GTGTTACACTGAAGAGCATA+AGG | + | chr2_3:31169659-31169678 | Msa0287850:intron | 40.0% |
| ! | GAGACGGATCCTGAAATTTT+AGG | - | chr2_3:31169757-31169776 | None:intergenic | 40.0% |
| AGTCATCCATGTTGTCTTGT+TGG | + | chr2_3:31169913-31169932 | Msa0287850:CDS | 40.0% | |
| TTGGATCCAACAAGACAACA+TGG | - | chr2_3:31169922-31169941 | None:intergenic | 40.0% | |
| ! | TGTCTTGTTGGATCCAAACA+CGG | + | chr2_3:31169925-31169944 | Msa0287850:CDS | 40.0% |
| TGAACAACATTTCCCGTGTT+TGG | - | chr2_3:31169941-31169960 | None:intergenic | 40.0% | |
| ACGGGAAATGTTGTTCAAGT+TGG | + | chr2_3:31169944-31169963 | Msa0287850:CDS | 40.0% | |
| !! | GCTGGAAGGTGATTTTAATG+AGG | + | chr2_3:31170000-31170019 | Msa0287850:CDS | 40.0% |
| ! | CTTTGAAAGCCACGAAGTAA+AGG | + | chr2_3:31170051-31170070 | Msa0287850:CDS | 40.0% |
| TGCAAATCTCCAGTTAGAAG+TGG | - | chr2_3:31170094-31170113 | None:intergenic | 40.0% | |
| ! | GTTAGTCTAAAGGAAGGAGT+AGG | + | chr2_3:31170115-31170134 | Msa0287850:CDS | 40.0% |
| AAGGAAGGAGTAGGAACATT+AGG | + | chr2_3:31170124-31170143 | Msa0287850:CDS | 40.0% | |
| CTTTCACCGATAATTCTAGC+TGG | + | chr2_3:31170155-31170174 | Msa0287850:CDS | 40.0% | |
| AGAAGCCGAAAGTTTAGACT+TGG | + | chr2_3:31170181-31170200 | Msa0287850:CDS | 40.0% | |
| !! | GTTTAGACTTGGTGTTAAGG+TGG | + | chr2_3:31170192-31170211 | Msa0287850:CDS | 40.0% |
| CAAACTTCATCATGCAAAGC+AGG | - | chr2_3:31170452-31170471 | None:intergenic | 40.0% | |
| CTGCTTTGCATGATGAAGTT+TGG | + | chr2_3:31170450-31170469 | Msa0287850:CDS | 40.0% | |
| GCATGATGAAGTTTGGAGAT+TGG | + | chr2_3:31170457-31170476 | Msa0287850:CDS | 40.0% | |
| AAGACGCAGGAAATCTTCTA+CGG | - | chr2_3:31170540-31170559 | None:intergenic | 40.0% | |
| TTCTTAATTTCTGTGGCTCG+CGG | - | chr2_3:31170568-31170587 | None:intergenic | 40.0% | |
| TTAGAGAAGAGTGATGTGGA+TGG | - | chr2_3:31170622-31170641 | None:intergenic | 40.0% | |
| ! | GTTTGCCACCTTTTCAATAC+AGG | + | chr2_3:31170678-31170697 | Msa0287850:intron | 40.0% |
| TCAATACAGGTACTTGGTAG+TGG | + | chr2_3:31170691-31170710 | Msa0287850:intron | 40.0% | |
| GTGGAATGTCAAACAGAATG+TGG | + | chr2_3:31170710-31170729 | Msa0287850:CDS | 40.0% | |
| CATGCTAAGACATGTGTGTT+GGG | + | chr2_3:31170748-31170767 | Msa0287850:CDS | 40.0% | |
| ACTGATGAAACTCATAGCAC+TGG | + | chr2_3:31170793-31170812 | Msa0287850:CDS | 40.0% | |
| !! | ATCATACGCCTTTTTCACCA+AGG | - | chr2_3:31171008-31171027 | None:intergenic | 40.0% |
| ATCCAGTTCGGATTATCAGA+TGG | + | chr2_3:31171225-31171244 | Msa0287850:CDS | 40.0% | |
| TACCATCTGATAATCCGAAC+TGG | - | chr2_3:31171230-31171249 | None:intergenic | 40.0% | |
| AGTTCGGATTATCAGATGGT+AGG | + | chr2_3:31171229-31171248 | Msa0287850:CDS | 40.0% | |
| GTTCGGATTATCAGATGGTA+GGG | + | chr2_3:31171230-31171249 | Msa0287850:CDS | 40.0% | |
| !! | ATTATCATGGAGACTGGTCT+AGG | + | chr2_3:31171329-31171348 | Msa0287850:CDS | 40.0% |
| ACATTGTCGCAGAAGAACTT+CGG | + | chr2_3:31171377-31171396 | Msa0287850:CDS | 40.0% | |
| CTGAACGAATGATACATCTG+AGG | - | chr2_3:31171523-31171542 | None:intergenic | 40.0% | |
| !! | AGCTTAAAGCAGCTTTAAGG+TGG | + | chr2_3:31171590-31171609 | Msa0287850:CDS | 40.0% |
| !! | GCTTAAAGCAGCTTTAAGGT+GGG | + | chr2_3:31171591-31171610 | Msa0287850:CDS | 40.0% |
| !! | CTTAAAGCAGCTTTAAGGTG+GGG | + | chr2_3:31171592-31171611 | Msa0287850:CDS | 40.0% |
| GGAAATTTGGTATGTGAAGG+TGG | + | chr2_3:31171777-31171796 | Msa0287850:three_prime_UTR | 40.0% | |
| TTGTTCAATACTGCAGTTGG+TGG | - | chr2_3:31171829-31171848 | None:intergenic | 40.0% | |
| ! | GGTTTGTTCAATACTGCAGT+TGG | - | chr2_3:31171832-31171851 | None:intergenic | 40.0% |
| GCAAAGACTCTGCTCATCTT+TGG | + | chr2_3:31168905-31168924 | Msa0287850:CDS | 45.0% | |
| CTTCACTTACCTGTAAGCCA+CGG | - | chr2_3:31169152-31169171 | None:intergenic | 45.0% | |
| ATGCCTCCTCACTTATTCAC+AGG | + | chr2_3:31169863-31169882 | Msa0287850:CDS | 45.0% | |
| CTCCTCACTTATTCACAGGA+GGG | + | chr2_3:31169867-31169886 | Msa0287850:CDS | 45.0% | |
| TTCCCTCCTGTGAATAAGTG+AGG | - | chr2_3:31169872-31169891 | None:intergenic | 45.0% | |
| TCACTTATTCACAGGAGGGA+AGG | + | chr2_3:31169871-31169890 | Msa0287850:CDS | 45.0% | |
| ! | GTCTTGTTGGATCCAAACAC+GGG | + | chr2_3:31169926-31169945 | Msa0287850:CDS | 45.0% |
| CACGAAGTAAAGGAACGTGA+GGG | + | chr2_3:31170061-31170080 | Msa0287850:CDS | 45.0% | |
| ACGAAGTAAAGGAACGTGAG+GGG | + | chr2_3:31170062-31170081 | Msa0287850:CDS | 45.0% | |
| TAAAGGAACGTGAGGGGAAA+AGG | + | chr2_3:31170068-31170087 | Msa0287850:CDS | 45.0% | |
| ACTTCATCATGCAAAGCAGG+TGG | - | chr2_3:31170449-31170468 | None:intergenic | 45.0% | |
| GAGATTGGATCGGATAGCAA+AGG | + | chr2_3:31170472-31170491 | Msa0287850:CDS | 45.0% | |
| TTGGATCGGATAGCAAAGGA+TGG | + | chr2_3:31170476-31170495 | Msa0287850:CDS | 45.0% | |
| GCATGCTAAGACATGTGTGT+TGG | + | chr2_3:31170747-31170766 | Msa0287850:CDS | 45.0% | |
| CTAAGAGGTCTCATTGCTGA+TGG | + | chr2_3:31170841-31170860 | Msa0287850:CDS | 45.0% | |
| GCAGATGTCTGTAGATTCCT+TGG | + | chr2_3:31170988-31171007 | Msa0287850:intron | 45.0% | |
| CAGCAGTATGCATCTGCAAA+GGG | + | chr2_3:31171142-31171161 | Msa0287850:CDS | 45.0% | |
| AGTATGCATCTGCAAAGGGA+AGG | + | chr2_3:31171146-31171165 | Msa0287850:CDS | 45.0% | |
| GTATGCATCTGCAAAGGGAA+GGG | + | chr2_3:31171147-31171166 | Msa0287850:CDS | 45.0% | |
| GCTTAGGAGTTCGCAAATGT+TGG | + | chr2_3:31171399-31171418 | Msa0287850:CDS | 45.0% | |
| TAGGAGTTCGCAAATGTTGG+AGG | + | chr2_3:31171402-31171421 | Msa0287850:CDS | 45.0% | |
| AGGAGTTCGCAAATGTTGGA+GGG | + | chr2_3:31171403-31171422 | Msa0287850:CDS | 45.0% | |
| GATGTATCATTCGTTCAGCG+AGG | + | chr2_3:31171525-31171544 | Msa0287850:CDS | 45.0% | |
| GAGGATAATGTCAAGTGCTC+AGG | + | chr2_3:31171544-31171563 | Msa0287850:CDS | 45.0% | |
| TAATGTCAAGTGCTCAGGCA+AGG | + | chr2_3:31171549-31171568 | Msa0287850:CDS | 45.0% | |
| TGCTTCTGTGGGAAGCTTCT+TGG | + | chr2_3:31168366-31168385 | Msa0287850:five_prime_UTR | 50.0% | |
| GCTTCTGTGGGAAGCTTCTT+GGG | + | chr2_3:31168367-31168386 | Msa0287850:five_prime_UTR | 50.0% | |
| CTTCTGTGGGAAGCTTCTTG+GGG | + | chr2_3:31168368-31168387 | Msa0287850:five_prime_UTR | 50.0% | |
| GTTCTGATTCCGTGGCTTAC+AGG | + | chr2_3:31169140-31169159 | Msa0287850:intron | 50.0% | |
| TGAAGAAGTGGAGCGTGCTT+TGG | + | chr2_3:31169167-31169186 | Msa0287850:CDS | 50.0% | |
| ACCATGCTAAACTGGGTGAC+AGG | + | chr2_3:31169199-31169218 | Msa0287850:CDS | 50.0% | |
| ACCTGTCACCCAGTTTAGCA+TGG | - | chr2_3:31169203-31169222 | None:intergenic | 50.0% | |
| AGGGACTAAGCTGGAATCTG+TGG | - | chr2_3:31169514-31169533 | None:intergenic | 50.0% | |
| ACAGAAGGACCAACGTGTCT+CGG | - | chr2_3:31169576-31169595 | None:intergenic | 50.0% | |
| TATTCTTGGCGGTGAAGACC+TGG | - | chr2_3:31169798-31169817 | None:intergenic | 50.0% | |
| CCTGGTGCTTCTATTCTTGG+CGG | - | chr2_3:31169809-31169828 | None:intergenic | 50.0% | |
| !! | CGCCAAGAATAGAAGCACCA+GGG | + | chr2_3:31169807-31169826 | Msa0287850:CDS | 50.0% |
| !! | GCCAAGAATAGAAGCACCAG+GGG | + | chr2_3:31169808-31169827 | Msa0287850:CDS | 50.0% |
| TCCCCTGGTGCTTCTATTCT+TGG | - | chr2_3:31169812-31169831 | None:intergenic | 50.0% | |
| ! | AGCTGCAGATTCTTTTCCCC+TGG | - | chr2_3:31169827-31169846 | None:intergenic | 50.0% |
| CCTCCTGTGAATAAGTGAGG+AGG | - | chr2_3:31169869-31169888 | None:intergenic | 50.0% | |
| CCTCCTCACTTATTCACAGG+AGG | + | chr2_3:31169866-31169885 | Msa0287850:CDS | 50.0% | |
| ATTCACAGGAGGGAAGGTTG+AGG | + | chr2_3:31169877-31169896 | Msa0287850:CDS | 50.0% | |
| TTCACAGGAGGGAAGGTTGA+GGG | + | chr2_3:31169878-31169897 | Msa0287850:CDS | 50.0% | |
| CCTCACGTTCCTTTACTTCG+TGG | - | chr2_3:31170063-31170082 | None:intergenic | 50.0% | |
| CCACGAAGTAAAGGAACGTG+AGG | + | chr2_3:31170060-31170079 | Msa0287850:CDS | 50.0% | |
| GGGAAAAGGCCACTTCTAAC+TGG | + | chr2_3:31170082-31170101 | Msa0287850:CDS | 50.0% | |
| GTGGCTCCTGGATATTGTGA+CGG | + | chr2_3:31170211-31170230 | Msa0287850:CDS | 50.0% | |
| TGGCTCCTGGATATTGTGAC+GGG | + | chr2_3:31170212-31170231 | Msa0287850:CDS | 50.0% | |
| CGAATCCCGTCACAATATCC+AGG | - | chr2_3:31170220-31170239 | None:intergenic | 50.0% | |
| CAGAATGTGGGAGAACACTG+TGG | + | chr2_3:31170723-31170742 | Msa0287850:CDS | 50.0% | |
| CAGATGCATACTGCTGCTCT+TGG | - | chr2_3:31171138-31171157 | None:intergenic | 50.0% | |
| GCAGCAGTATGCATCTGCAA+AGG | + | chr2_3:31171141-31171160 | Msa0287850:CDS | 50.0% | |
| !! | GACTGGTCTAGGCAGAGAAA+CGG | + | chr2_3:31171340-31171359 | Msa0287850:CDS | 50.0% |
| TCTAGGCAGAGAAACGGACA+AGG | + | chr2_3:31171346-31171365 | Msa0287850:CDS | 50.0% | |
| CTAGGCAGAGAAACGGACAA+GGG | + | chr2_3:31171347-31171366 | Msa0287850:CDS | 50.0% | |
| TCGCAGAAGAACTTCGGCTT+AGG | + | chr2_3:31171383-31171402 | Msa0287850:CDS | 50.0% | |
| TGGAGGGTGATGATATGCAG+AGG | + | chr2_3:31171419-31171438 | Msa0287850:CDS | 50.0% | |
| GTTAGGCATGATGACACCCG+TGG | + | chr2_3:31169435-31169454 | Msa0287850:intron | 55.0% | |
| !! | CCGCCAAGAATAGAAGCACC+AGG | + | chr2_3:31169806-31169825 | Msa0287850:CDS | 55.0% |
| !! | CTTGGTGTTAAGGTGGCTCC+TGG | + | chr2_3:31170199-31170218 | Msa0287850:CDS | 55.0% |
| GCAGAGAAACGGACAAGGGT+TGG | + | chr2_3:31171351-31171370 | Msa0287850:CDS | 55.0% | |
| TGCTCAGGCAAGGCTGTTGT+TGG | + | chr2_3:31171559-31171578 | Msa0287850:CDS | 55.0% | |
| GCTCAGGCAAGGCTGTTGTT+GGG | + | chr2_3:31171560-31171579 | Msa0287850:CDS | 55.0% | |
| GGGAAGGTTGAGGGAGAGCA+AGG | + | chr2_3:31169887-31169906 | Msa0287850:CDS | 60.0% | |
| TGACGGGATTCGAGTGCGTG+AGG | + | chr2_3:31170228-31170247 | Msa0287850:CDS | 60.0% | |
| GACGGGATTCGAGTGCGTGA+GGG | + | chr2_3:31170229-31170248 | Msa0287850:CDS | 60.0% | |
| CAGGCAAGGCTGTTGTTGGG+TGG | + | chr2_3:31171563-31171582 | Msa0287850:CDS | 60.0% | |
| GCTCGCGGACAAGAAGACGC+AGG | - | chr2_3:31170553-31170572 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 31168210 | 31171991 | 31168210 | ID=Msa0287850;Name=Msa0287850 |
| chr2_3 | mRNA | 31168210 | 31171991 | 31168210 | ID=Msa0287850-mRNA-1;Parent=Msa0287850;Name=Msa0287850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=263|0.83|0.85|1|1|1|7|319|612 |
| chr2_3 | exon | 31168210 | 31168594 | 31168210 | ID=Msa0287850-mRNA-1:exon:10619;Parent=Msa0287850-mRNA-1 |
| chr2_3 | exon | 31168872 | 31168947 | 31168872 | ID=Msa0287850-mRNA-1:exon:10620;Parent=Msa0287850-mRNA-1 |
| chr2_3 | exon | 31169162 | 31169220 | 31169162 | ID=Msa0287850-mRNA-1:exon:10621;Parent=Msa0287850-mRNA-1 |
| chr2_3 | exon | 31169799 | 31170292 | 31169799 | ID=Msa0287850-mRNA-1:exon:10622;Parent=Msa0287850-mRNA-1 |
| chr2_3 | exon | 31170387 | 31170589 | 31170387 | ID=Msa0287850-mRNA-1:exon:10623;Parent=Msa0287850-mRNA-1 |
| chr2_3 | exon | 31170700 | 31170903 | 31170700 | ID=Msa0287850-mRNA-1:exon:10624;Parent=Msa0287850-mRNA-1 |
| chr2_3 | exon | 31170992 | 31171991 | 31170992 | ID=Msa0287850-mRNA-1:exon:10625;Parent=Msa0287850-mRNA-1 |
| chr2_3 | five_prime_UTR | 31168210 | 31168472 | 31168210 | ID=Msa0287850-mRNA-1:five_prime_utr;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31168473 | 31168594 | 31168473 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31168872 | 31168947 | 31168872 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31169162 | 31169220 | 31169162 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31169799 | 31170292 | 31169799 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31170387 | 31170589 | 31170387 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31170700 | 31170903 | 31170700 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | CDS | 31170992 | 31171672 | 31170992 | ID=Msa0287850-mRNA-1:cds;Parent=Msa0287850-mRNA-1 |
| chr2_3 | three_prime_UTR | 31171673 | 31171991 | 31171673 | ID=Msa0287850-mRNA-1:three_prime_utr;Parent=Msa0287850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
