Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442940 | sp|F4IPM3|CB60E_ARATH | 59.048 | 630 | 196 | 10 | 9 | 607 | 1 | 599 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442940 | A0A072VIC7 | 95.717 | 607 | 12 | 1 | 1 | 607 | 1 | 593 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1352590 | Msa1442940 | 0.809912 | 1.496299e-50 | -8.615850e-47 |
| Msa1373070 | Msa1442940 | 0.817265 | 3.606895e-52 | -8.615850e-47 |
| Msa1375130 | Msa1442940 | 0.823399 | 1.414126e-53 | -8.615850e-47 |
| Msa0206440 | Msa1442940 | 0.941065 | 7.936823e-101 | -8.615850e-47 |
| Msa0249360 | Msa1442940 | 0.905599 | 3.622372e-80 | -8.615850e-47 |
| Msa0287850 | Msa1442940 | 0.909758 | 3.993838e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442940 | MtrunA17_Chr2g0304831 | 95.717 | 607 | 12 | 1 | 1 | 607 | 1 | 593 | 0.0 | 1201 |
| Msa1442940 | MtrunA17_Chr4g0048161 | 52.441 | 635 | 248 | 10 | 8 | 607 | 12 | 627 | 0.0 | 619 |
| Msa1442940 | MtrunA17_Chr2g0281171 | 52.615 | 650 | 242 | 11 | 1 | 607 | 6 | 632 | 0.0 | 611 |
| Msa1442940 | MtrunA17_Chr4g0072691 | 52.244 | 624 | 227 | 11 | 34 | 607 | 3 | 605 | 0.0 | 597 |
| Msa1442940 | MtrunA17_Chr8g0391221 | 42.680 | 403 | 207 | 7 | 11 | 407 | 4 | 388 | 6.63e-100 | 312 |
| Msa1442940 | MtrunA17_Chr6g0484131 | 39.216 | 459 | 240 | 9 | 11 | 450 | 4 | 442 | 2.73e-99 | 311 |
| Msa1442940 | MtrunA17_Chr6g0484111 | 39.479 | 461 | 236 | 10 | 11 | 450 | 4 | 442 | 8.26e-99 | 310 |
| Msa1442940 | MtrunA17_Chr4g0059411 | 44.444 | 387 | 192 | 6 | 11 | 396 | 4 | 368 | 9.64e-99 | 311 |
| Msa1442940 | MtrunA17_Chr8g0391211 | 43.501 | 377 | 192 | 6 | 34 | 407 | 101 | 459 | 2.76e-97 | 308 |
| Msa1442940 | MtrunA17_Chr6g0484121 | 39.046 | 461 | 242 | 9 | 11 | 452 | 4 | 444 | 3.55e-97 | 305 |
| Msa1442940 | MtrunA17_Chr7g0271691 | 29.112 | 608 | 327 | 23 | 10 | 600 | 4 | 524 | 8.79e-56 | 197 |
| Msa1442940 | MtrunA17_Chr7g0271681 | 27.899 | 552 | 297 | 19 | 91 | 607 | 6 | 491 | 1.89e-40 | 154 |
| Msa1442940 | MtrunA17_Chr7g0271671 | 31.232 | 349 | 217 | 7 | 54 | 398 | 60 | 389 | 3.16e-40 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442940 | AT2G24300.3 | 59.027 | 637 | 197 | 10 | 1 | 607 | 1 | 603 | 0.0 | 714 |
| Msa1442940 | AT2G24300.2 | 59.048 | 630 | 196 | 10 | 9 | 607 | 1 | 599 | 0.0 | 711 |
| Msa1442940 | AT4G31000.1 | 58.882 | 608 | 203 | 10 | 1 | 607 | 1 | 562 | 0.0 | 680 |
| Msa1442940 | AT2G24300.1 | 59.028 | 576 | 175 | 9 | 62 | 607 | 8 | 552 | 0.0 | 649 |
| Msa1442940 | AT2G18750.3 | 52.229 | 628 | 255 | 10 | 6 | 607 | 10 | 618 | 0.0 | 594 |
| Msa1442940 | AT2G18750.2 | 52.229 | 628 | 255 | 10 | 6 | 607 | 10 | 618 | 0.0 | 594 |
| Msa1442940 | AT2G18750.1 | 52.229 | 628 | 255 | 10 | 6 | 607 | 10 | 618 | 0.0 | 594 |
| Msa1442940 | AT4G31000.2 | 52.864 | 611 | 214 | 11 | 1 | 607 | 1 | 541 | 0.0 | 591 |
| Msa1442940 | AT5G57580.1 | 50.226 | 663 | 244 | 16 | 1 | 604 | 2 | 637 | 0.0 | 591 |
| Msa1442940 | AT4G25800.1 | 53.146 | 604 | 233 | 11 | 30 | 607 | 16 | 595 | 0.0 | 582 |
| Msa1442940 | AT4G25800.2 | 53.146 | 604 | 233 | 11 | 30 | 607 | 16 | 595 | 0.0 | 582 |
| Msa1442940 | AT5G62570.2 | 42.092 | 392 | 200 | 10 | 36 | 421 | 13 | 383 | 1.19e-93 | 297 |
| Msa1442940 | AT5G62570.1 | 41.878 | 394 | 202 | 10 | 34 | 421 | 26 | 398 | 1.47e-93 | 297 |
| Msa1442940 | AT5G62570.4 | 43.017 | 358 | 179 | 9 | 34 | 387 | 26 | 362 | 4.05e-89 | 281 |
| Msa1442940 | AT1G73805.1 | 38.737 | 475 | 241 | 14 | 16 | 484 | 11 | 441 | 1.28e-84 | 272 |
| Msa1442940 | AT5G26920.3 | 37.432 | 366 | 195 | 10 | 37 | 398 | 28 | 363 | 1.15e-69 | 232 |
| Msa1442940 | AT5G62570.3 | 44.718 | 284 | 133 | 8 | 34 | 314 | 26 | 288 | 2.05e-69 | 227 |
| Msa1442940 | AT5G26920.1 | 37.432 | 366 | 195 | 10 | 37 | 398 | 28 | 363 | 1.37e-68 | 233 |
| Msa1442940 | AT5G26920.2 | 37.158 | 366 | 188 | 11 | 37 | 398 | 28 | 355 | 2.12e-66 | 227 |
Find 160 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTGTGGGAAGCTTCT+TGG | 0.160955 | tig0030242:-30414 | Msa1442940:five_prime_UTR |
| TCCCCTGGTGCTTCTATTCT+TGG | 0.164360 | tig0030242:+28987 | None:intergenic |
| TTTCTCAACTTTATTGTTCT+TGG | 0.176255 | tig0030242:+30297 | None:intergenic |
| TTCTAAATTTAGATATTTAT+TGG | 0.195629 | tig0030242:-30350 | Msa1442940:five_prime_UTR |
| AAAATTAGCTCCTTCATTAA+TGG | 0.231011 | tig0030242:+27327 | None:intergenic |
| TAATAATTACCTCCAATTTC+AGG | 0.231327 | tig0030242:+27469 | None:intergenic |
| GAGGCATTCTTGTTCTAAAA+TGG | 0.234537 | tig0030242:+28949 | None:intergenic |
| TTAAGCTTAAAGCAGCTTTA+AGG | 0.234780 | tig0030242:-27192 | Msa1442940:CDS |
| CTAGCTAAACCAGGTAGTTT+TGG | 0.249092 | tig0030242:+30223 | None:intergenic |
| ATTAATGAAGGAGCTAATTT+TGG | 0.250528 | tig0030242:-27325 | Msa1442940:CDS |
| GCTTCTGTGGGAAGCTTCTT+GGG | 0.251062 | tig0030242:-30413 | Msa1442940:five_prime_UTR |
| TTTAACTTCGCAACTGATTC+TGG | 0.253100 | tig0030242:+28828 | None:intergenic |
| GAAATTAGACCATGCTAAAC+TGG | 0.287354 | tig0030242:-29605 | Msa1442940:CDS |
| GGTGATAATAATCCTGAAAT+TGG | 0.293651 | tig0030242:-27481 | Msa1442940:CDS |
| TGAACAACATTTCCCGTGTT+TGG | 0.304757 | tig0030242:+28858 | None:intergenic |
| CTGCTTTGCATGATGAAGTT+TGG | 0.307314 | tig0030242:-28346 | Msa1442940:CDS |
| TGTAGATTCCTTGGTGAAAA+AGG | 0.308211 | tig0030242:-27782 | Msa1442940:CDS |
| ACCTGAGATGTTGTAATTCA+TGG | 0.334632 | tig0030242:+27501 | None:intergenic |
| TCTAAATTTAGATATTTATT+GGG | 0.335094 | tig0030242:-30349 | Msa1442940:five_prime_UTR |
| GCAAAGACTCTGCTCATCTT+TGG | 0.340248 | tig0030242:-29890 | Msa1442940:CDS |
| TGTTTGATATATTAGTTTGT+AGG | 0.351642 | tig0030242:+30520 | None:intergenic |
| AGGATGATGACAAAATAATA+TGG | 0.355307 | tig0030242:+30540 | None:intergenic |
| ATTTAGATATTTATTGGGAT+TGG | 0.358832 | tig0030242:-30344 | Msa1442940:five_prime_UTR |
| ATGAGGAAATTGATGATGAT+TGG | 0.358972 | tig0030242:-28779 | Msa1442940:CDS |
| ACTTGGTCTATTCTTAAGAT+AGG | 0.367574 | tig0030242:+30373 | None:intergenic |
| TAACACCAAGTCTAAACTTT+CGG | 0.374326 | tig0030242:+28610 | None:intergenic |
| TCTTATCCAGCTAGAATTAT+CGG | 0.375347 | tig0030242:+28635 | None:intergenic |
| GGGAAAAGGCCACTTCTAAC+TGG | 0.383127 | tig0030242:-28714 | Msa1442940:CDS |
| AAGGAAGGAGTAGGAACATT+AGG | 0.389807 | tig0030242:-28672 | Msa1442940:CDS |
| ATATTTATTGGGATTGGATA+AGG | 0.396579 | tig0030242:-30338 | Msa1442940:five_prime_UTR |
| ATTGGATAAGGTTCTAGAAA+TGG | 0.399978 | tig0030242:-30326 | Msa1442940:exon |
| GCATGATGAAGTTTGGAGAT+TGG | 0.410980 | tig0030242:-28339 | Msa1442940:CDS |
| TAATATTTAATCTCATTGTA+TGG | 0.412134 | tig0030242:+26923 | None:intergenic |
| CCTCACGTTCCTTTACTTCG+TGG | 0.416570 | tig0030242:+28736 | None:intergenic |
| TTCTTTGACTAATTCCAAAA+GGG | 0.417389 | tig0030242:-27710 | Msa1442940:CDS |
| CAGATGCATACTGCTGCTCT+TGG | 0.421224 | tig0030242:+27644 | None:intergenic |
| AATATCTAAATTTAGAAACT+TGG | 0.424064 | tig0030242:+30356 | None:intergenic |
| CAGAAGCAGAAAACAAATCT+TGG | 0.427429 | tig0030242:+30429 | None:intergenic |
| ATTGGAGGTAATTATTATCA+TGG | 0.428342 | tig0030242:-27463 | Msa1442940:CDS |
| TGAGTTCAAATGCTTGAAAT+CGG | 0.432389 | tig0030242:-27109 | Msa1442940:three_prime_UTR |
| TGAAGAAGTGGAGCGTGCTT+TGG | 0.435844 | tig0030242:-29629 | Msa1442940:CDS |
| TGCTCAGGGAAGGCTGTTGT+TGG | 0.436709 | tig0030242:-27220 | Msa1442940:CDS |
| GCTTAGAAGTTCACAAATGT+TGG | 0.440272 | tig0030242:-27380 | Msa1442940:CDS |
| ATTCTTTGACTAATTCCAAA+AGG | 0.441002 | tig0030242:-27711 | Msa1442940:CDS |
| TAAAGGAACGTGAGGGGAAA+AGG | 0.446042 | tig0030242:-28728 | Msa1442940:CDS |
| ATCACTCACTTCAAATCAAA+AGG | 0.454320 | tig0030242:-27914 | Msa1442940:intron |
| AGTCATCCATGTTGTCTTGT+TGG | 0.456149 | tig0030242:-28883 | Msa1442940:CDS |
| CCTGGTGCTTCTATTCTTGG+CGG | 0.458356 | tig0030242:+28990 | None:intergenic |
| GAGGATAATGTCAAGTGCTC+AGG | 0.464901 | tig0030242:-27235 | Msa1442940:CDS |
| AAAGTTTAGACTTGGTGTTA+AGG | 0.469299 | tig0030242:-28607 | Msa1442940:CDS |
| CTTGGTGTTAAGGTGGCTCC+TGG | 0.469576 | tig0030242:-28597 | Msa1442940:CDS |
| GTGATTCTAAAGAAAAGAAC+TGG | 0.470764 | tig0030242:+27932 | None:intergenic |
| TCAATACAGGTACTTGGTAG+TGG | 0.472613 | tig0030242:-28105 | Msa1442940:intron |
| CTCCATCATATTCTATGACT+TGG | 0.480405 | tig0030242:+27743 | None:intergenic |
| ATTATCATGGAGACTGGTCT+AGG | 0.480685 | tig0030242:-27450 | Msa1442940:CDS |
| TTCACAGGAGGGAAGGTTGA+GGG | 0.486109 | tig0030242:-28918 | Msa1442940:CDS |
| TCAATATGAAGGCTATATTG+AGG | 0.486113 | tig0030242:-28420 | Msa1442940:intron |
| TACCGTCTGATAATCCGAAC+TGG | 0.488201 | tig0030242:+27552 | None:intergenic |
| TGTAATTGTGGAAGCTTTGA+AGG | 0.490261 | tig0030242:-29923 | Msa1442940:CDS |
| CTTTGAAAGCCACGAAGTAA+AGG | 0.491383 | tig0030242:-28745 | Msa1442940:CDS |
| CTTTCACCGATAATTCTAGC+TGG | 0.492240 | tig0030242:-28641 | Msa1442940:CDS |
| GCTCAGGGAAGGCTGTTGTT+GGG | 0.493371 | tig0030242:-27219 | Msa1442940:CDS |
| AAACAGAAACAAAGTAAGAA+AGG | 0.501330 | tig0030242:+30483 | None:intergenic |
| GGGAAGGTTGAGGGAGAGCA+AGG | 0.502361 | tig0030242:-28909 | Msa1442940:CDS |
| AGCTTAAAGCAGCTTTAAGG+TGG | 0.507495 | tig0030242:-27189 | Msa1442940:CDS |
| ACGGGAAATGTTGTTCAAGT+TGG | 0.508647 | tig0030242:-28852 | Msa1442940:CDS |
| TTGTTCAATACTGCAGTTGG+TGG | 0.508801 | tig0030242:+26947 | None:intergenic |
| ACCATGCTAAACTGGGTGAC+AGG | 0.518344 | tig0030242:-29597 | Msa1442940:intron |
| CAAAACTACCTGGTTTAGCT+AGG | 0.519085 | tig0030242:-30222 | Msa1442940:intron |
| CGAATCCCGTCACAATATCC+AGG | 0.519800 | tig0030242:+28579 | None:intergenic |
| TTACTTAAGACCATTAATGA+AGG | 0.525303 | tig0030242:-27337 | Msa1442940:CDS |
| CAAACTTCATCATGCAAAGC+AGG | 0.525398 | tig0030242:+28347 | None:intergenic |
| CAGGGAAGGCTGTTGTTGGG+TGG | 0.525617 | tig0030242:-27216 | Msa1442940:CDS |
| CATGCTAAGACATGTGTGTT+GGG | 0.526739 | tig0030242:-28048 | Msa1442940:CDS |
| GTAATTATTATCATGGAGAC+TGG | 0.529490 | tig0030242:-27456 | Msa1442940:CDS |
| GCAGAGAAACGGACAAGGGT+TGG | 0.529494 | tig0030242:-27428 | Msa1442940:CDS |
| GCAGATGTCTGTAGATTCCT+TGG | 0.531398 | tig0030242:-27791 | Msa1442940:intron |
| ATTCACAGGAGGGAAGGTTG+AGG | 0.534510 | tig0030242:-28919 | Msa1442940:CDS |
| CAGCAGTATGCATCTGCAAA+GGG | 0.538227 | tig0030242:-27637 | Msa1442940:CDS |
| CCGCCAAGAATAGAAGCACC+AGG | 0.541056 | tig0030242:-28990 | Msa1442940:CDS |
| AGATTTGCAAGTTAGTCTAA+AGG | 0.541446 | tig0030242:-28691 | Msa1442940:CDS |
| GGTTTGTTCAATACTGCAGT+TGG | 0.541973 | tig0030242:+26944 | None:intergenic |
| ACCATGAATTACAACATCTC+AGG | 0.542372 | tig0030242:-27502 | Msa1442940:CDS |
| CTTCTGTGGGAAGCTTCTTG+GGG | 0.543919 | tig0030242:-30412 | Msa1442940:five_prime_UTR |
| TCTATGATCTTTAACAGCAA+AGG | 0.544423 | tig0030242:+28533 | None:intergenic |
| CTTACACTTCTTAATTTCTG+TGG | 0.544648 | tig0030242:+28224 | None:intergenic |
| GACTGGTCTAGGCAGAGAAA+CGG | 0.545642 | tig0030242:-27439 | Msa1442940:CDS |
| GATAATAATCCTGAAATTGG+AGG | 0.549659 | tig0030242:-27478 | Msa1442940:CDS |
| GCTTAAAGCAGCTTTAAGGT+GGG | 0.551907 | tig0030242:-27188 | Msa1442940:CDS |
| ACATCACAAATAGCATTACC+AGG | 0.554828 | tig0030242:-27526 | Msa1442940:CDS |
| TGGCTCCTGGATATTGTGAC+GGG | 0.555314 | tig0030242:-28584 | Msa1442940:CDS |
| TTCTTAATTTCTGTGGCTCG+CGG | 0.555637 | tig0030242:+28231 | None:intergenic |
| GACCAAGTCATAGAATATGA+TGG | 0.555949 | tig0030242:-27745 | Msa1442940:CDS |
| ATGCCTCCTCACTTATTCAC+AGG | 0.560024 | tig0030242:-28933 | Msa1442940:CDS |
| CTAAGAGGTCTCATTGCTGA+TGG | 0.560083 | tig0030242:-27955 | Msa1442940:CDS |
| AGAAGCCGAAAGTTTAGACT+TGG | 0.563077 | tig0030242:-28615 | Msa1442940:CDS |
| GAAGTTAAATGTTGTTGTGC+TGG | 0.563996 | tig0030242:-28814 | Msa1442940:CDS |
| ATGAAGTTTGGAGATTGGAT+CGG | 0.564012 | tig0030242:-28334 | Msa1442940:CDS |
| TCACTTATTCACAGGAGGGA+AGG | 0.564488 | tig0030242:-28925 | Msa1442940:CDS |
| ACATTGTCGCAGAAGAACTT+CGG | 0.565117 | tig0030242:-27402 | Msa1442940:CDS |
| TGTCTTGTTGGATCCAAACA+CGG | 0.566446 | tig0030242:-28871 | Msa1442940:CDS |
| GAATAACTACTCATCCAGTT+CGG | 0.566553 | tig0030242:-27566 | Msa1442940:CDS |
| GTTTAGACTTGGTGTTAAGG+TGG | 0.566982 | tig0030242:-28604 | Msa1442940:CDS |
| GTTAGTCTAAAGGAAGGAGT+AGG | 0.569301 | tig0030242:-28681 | Msa1442940:CDS |
| GCTTCTTTGACTGAGTAACA+TGG | 0.570059 | tig0030242:+30245 | None:intergenic |
| CTTAAAGCAGCTTTAAGGTG+GGG | 0.570067 | tig0030242:-27187 | Msa1442940:CDS |
| TTGCAAGTTAGTCTAAAGGA+AGG | 0.570603 | tig0030242:-28687 | Msa1442940:CDS |
| AGGATAATGTCAAGTGCTCA+GGG | 0.579753 | tig0030242:-27234 | Msa1442940:CDS |
| TGCAAATCTCCAGTTAGAAG+TGG | 0.579936 | tig0030242:+28705 | None:intergenic |
| TGACGGGATTCGAGTGCGTG+AGG | 0.580615 | tig0030242:-28568 | Msa1442940:CDS |
| TTTCAAGTGCTTGAAACGAG+TGG | 0.581193 | tig0030242:+27078 | None:intergenic |
| GTGGAATGTCAAACAGAATG+TGG | 0.581489 | tig0030242:-28086 | Msa1442940:CDS |
| AGAAGTTCACAAATGTTGGA+AGG | 0.581513 | tig0030242:-27376 | Msa1442940:CDS |
| TCAAAGAAGCCAAAACTACC+TGG | 0.581861 | tig0030242:-30232 | Msa1442940:CDS |
| GTCTTGTTGGATCCAAACAC+GGG | 0.582870 | tig0030242:-28870 | Msa1442940:CDS |
| GCAGCAGTATGCATCTGCAA+AGG | 0.584416 | tig0030242:-27638 | Msa1442940:CDS |
| TTTGCTGTTAAAGATCATAG+AGG | 0.584829 | tig0030242:-28531 | Msa1442940:CDS |
| GCAAATGTACAGTGTAATTG+TGG | 0.585229 | tig0030242:-29935 | Msa1442940:intron |
| TCTTTGACTAATTCCAAAAG+GGG | 0.586778 | tig0030242:-27709 | Msa1442940:CDS |
| CTTACAGGTAAGTGAAGAAG+TGG | 0.588186 | tig0030242:-29641 | Msa1442940:intron |
| GCATGCTAAGACATGTGTGT+TGG | 0.592550 | tig0030242:-28049 | Msa1442940:CDS |
| GTGGCTCCTGGATATTGTGA+CGG | 0.594325 | tig0030242:-28585 | Msa1442940:CDS |
| GTATGCATCTGCAAAGGGAA+GGG | 0.595195 | tig0030242:-27632 | Msa1442940:CDS |
| AGTATGCATCTGCAAAGGGA+AGG | 0.595436 | tig0030242:-27633 | Msa1442940:CDS |
| TTAAATGTTGTTGTGCTGGA+AGG | 0.596826 | tig0030242:-28810 | Msa1442940:CDS |
| ACTGATGAAACTCATAGCAC+TGG | 0.598016 | tig0030242:-28003 | Msa1442940:CDS |
| AAATTAGACCATGCTAAACT+GGG | 0.600527 | tig0030242:-29604 | Msa1442940:CDS |
| ACCTGTCACCCAGTTTAGCA+TGG | 0.604323 | tig0030242:+29596 | None:intergenic |
| AAGACGCAGGAAATCTTCTA+CGG | 0.608096 | tig0030242:+28259 | None:intergenic |
| TAATGTCAAGTGCTCAGGGA+AGG | 0.608603 | tig0030242:-27230 | Msa1442940:CDS |
| CCTCCTCACTTATTCACAGG+AGG | 0.610687 | tig0030242:-28930 | Msa1442940:CDS |
| GACGGGATTCGAGTGCGTGA+GGG | 0.611142 | tig0030242:-28567 | Msa1442940:CDS |
| TTGAAATACCTAGCTAAACC+AGG | 0.612518 | tig0030242:+30214 | None:intergenic |
| GAGATTGGATCGGATAGCAA+AGG | 0.612915 | tig0030242:-28324 | Msa1442940:CDS |
| ATGTTGTAATTCATGGTCCC+TGG | 0.617403 | tig0030242:+27508 | None:intergenic |
| TCTAGGCAGAGAAACGGACA+AGG | 0.618669 | tig0030242:-27433 | Msa1442940:CDS |
| TTCCCTCCTGTGAATAAGTG+AGG | 0.620654 | tig0030242:+28927 | None:intergenic |
| CCACGAAGTAAAGGAACGTG+AGG | 0.622907 | tig0030242:-28736 | Msa1442940:CDS |
| TGGAATGTCAAACAGAATGT+GGG | 0.623286 | tig0030242:-28085 | Msa1442940:CDS |
| CTCCTCACTTATTCACAGGA+GGG | 0.626882 | tig0030242:-28929 | Msa1442940:CDS |
| GAAAAGAAGTTATGATGATG+AGG | 0.627438 | tig0030242:-30278 | Msa1442940:CDS |
| AATTGTGGAAGCTTTGAAGG+TGG | 0.629170 | tig0030242:-29920 | Msa1442940:CDS |
| AACAACATATATGAGCTAAG+AGG | 0.636409 | tig0030242:-27970 | Msa1442940:CDS |
| CACGAAGTAAAGGAACGTGA+GGG | 0.637636 | tig0030242:-28735 | Msa1442940:CDS |
| CGCCAAGAATAGAAGCACCA+GGG | 0.641290 | tig0030242:-28989 | Msa1442940:CDS |
| GCCAAGAATAGAAGCACCAG+GGG | 0.641379 | tig0030242:-28988 | Msa1442940:CDS |
| GTTCGGATTATCAGACGGTA+CGG | 0.643155 | tig0030242:-27549 | Msa1442940:CDS |
| ACTTCATCATGCAAAGCAGG+TGG | 0.646109 | tig0030242:+28350 | None:intergenic |
| ATCCAGTTCGGATTATCAGA+CGG | 0.659395 | tig0030242:-27554 | Msa1442940:CDS |
| TTGGATCGGATAGCAAAGGA+TGG | 0.661274 | tig0030242:-28320 | Msa1442940:CDS |
| CTGAACGAATGATACATCTG+AGG | 0.671246 | tig0030242:+27259 | None:intergenic |
| TTGGATCCAACAAGACAACA+TGG | 0.676027 | tig0030242:+28877 | None:intergenic |
| CCTCCTGTGAATAAGTGAGG+AGG | 0.676250 | tig0030242:+28930 | None:intergenic |
| GCTCGCGGACAAGAAGACGC+AGG | 0.689588 | tig0030242:+28246 | None:intergenic |
| ACGAAGTAAAGGAACGTGAG+GGG | 0.705159 | tig0030242:-28734 | Msa1442940:CDS |
| CATCACAAATAGCATTACCA+GGG | 0.710547 | tig0030242:-27525 | Msa1442940:CDS |
| GATGTATCATTCGTTCAGCG+AGG | 0.717492 | tig0030242:-27254 | Msa1442940:CDS |
| CAGAATGTGGGAGAACACTG+TGG | 0.727384 | tig0030242:-28073 | Msa1442940:CDS |
| CTAGGCAGAGAAACGGACAA+GGG | 0.731036 | tig0030242:-27432 | Msa1442940:CDS |
| TGGAAGGTGATGATATGCAA+AGG | 0.731790 | tig0030242:-27360 | Msa1442940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTAAATTTAGATATTTAT+TGG | - | tig0030242:27020-27039 | Msa1442940:three_prime_UTR | 10.0% |
| !! | TCTAAATTTAGATATTTATT+GGG | - | tig0030242:27021-27040 | Msa1442940:three_prime_UTR | 10.0% |
| !!! | AATTATTATTTATTTTCGAT+AGG | + | tig0030242:27982-28001 | None:intergenic | 10.0% |
| !! | AATATCTAAATTTAGAAACT+TGG | + | tig0030242:27017-27036 | None:intergenic | 15.0% |
| !!! | CATATAGTATTTTAATTTAG+TGG | - | tig0030242:27209-27228 | Msa1442940:CDS | 15.0% |
| !! | TTTAATAGAATCTCATATAA+TGG | - | tig0030242:27307-27326 | Msa1442940:CDS | 15.0% |
| !! | AATAATAATTGATATCTGTT+AGG | - | tig0030242:27992-28011 | Msa1442940:CDS | 15.0% |
| !!! | AAAATTGTTTGTTTTTCATA+GGG | + | tig0030242:28107-28126 | None:intergenic | 15.0% |
| !!! | AAAAATTGTTTGTTTTTCAT+AGG | + | tig0030242:28108-28127 | None:intergenic | 15.0% |
| !!! | TAAAAGACTAAAAAATGTTT+TGG | - | tig0030242:30333-30352 | Msa1442940:five_prime_UTR | 15.0% |
| !! | TAATATTTAATCTCATTGTA+TGG | + | tig0030242:30450-30469 | None:intergenic | 15.0% |
| !!! | TGTTTGATATATTAGTTTGT+AGG | + | tig0030242:26853-26872 | None:intergenic | 20.0% |
| !!! | TTTATCAACTCAAACTTTTA+AGG | - | tig0030242:26907-26926 | Msa1442940:three_prime_UTR | 20.0% |
| !! | ATTTAGATATTTATTGGGAT+TGG | - | tig0030242:27026-27045 | Msa1442940:three_prime_UTR | 20.0% |
| !! | TCTATTAAATTCAACTTAGA+TGG | + | tig0030242:27296-27315 | None:intergenic | 20.0% |
| !! | TAATACATGTATATAAGTTG+TGG | + | tig0030242:28299-28318 | None:intergenic | 20.0% |
| !!! | CAACAATTTTTTCAATATGA+AGG | - | tig0030242:28939-28958 | Msa1442940:CDS | 20.0% |
| !!! | TAAAAAATGTTTTGGAGATT+TGG | - | tig0030242:30341-30360 | Msa1442940:five_prime_UTR | 20.0% |
| ! | AGGATGATGACAAAATAATA+TGG | + | tig0030242:26833-26852 | None:intergenic | 25.0% |
| ! | AAACAGAAACAAAGTAAGAA+AGG | + | tig0030242:26890-26909 | None:intergenic | 25.0% |
| ! | ATATTTATTGGGATTGGATA+AGG | - | tig0030242:27032-27051 | Msa1442940:three_prime_UTR | 25.0% |
| ! | TTTCTCAACTTTATTGTTCT+TGG | + | tig0030242:27076-27095 | None:intergenic | 25.0% |
| ! | TTCTTTCTACTAATGTAATG+TGG | - | tig0030242:27241-27260 | Msa1442940:CDS | 25.0% |
| ! | TTGTGAAATATTCAAGCAAA+GGG | + | tig0030242:27607-27626 | None:intergenic | 25.0% |
| ! | TTTGTGAAATATTCAAGCAA+AGG | + | tig0030242:27608-27627 | None:intergenic | 25.0% |
| ! | TGCTTGAATATTTCACAAAA+AGG | - | tig0030242:27609-27628 | Msa1442940:CDS | 25.0% |
| ! | AATTTACATCATACCGTTAA+GGG | + | tig0030242:27925-27944 | None:intergenic | 25.0% |
| ! | TAATTTACATCATACCGTTA+AGG | + | tig0030242:27926-27945 | None:intergenic | 25.0% |
| !!! | CTCTAATCATATTTTTTCGA+AGG | - | tig0030242:29210-29229 | Msa1442940:intron | 25.0% |
| !! | TGAAAAAGGCATATGATAAT+TGG | - | tig0030242:29602-29621 | Msa1442940:CDS | 25.0% |
| !! | GAAAAAGGCATATGATAATT+GGG | - | tig0030242:29603-29622 | Msa1442940:CDS | 25.0% |
| ! | ATTCTTTGACTAATTCCAAA+AGG | - | tig0030242:29659-29678 | Msa1442940:intron | 25.0% |
| ! | TTCTTTGACTAATTCCAAAA+GGG | - | tig0030242:29660-29679 | Msa1442940:intron | 25.0% |
| !!! | TTGCAAATGTTGATTTTGTT+CGG | + | tig0030242:29779-29798 | None:intergenic | 25.0% |
| ! | TAATAATTACCTCCAATTTC+AGG | + | tig0030242:29904-29923 | None:intergenic | 25.0% |
| ! | ATTGGAGGTAATTATTATCA+TGG | - | tig0030242:29907-29926 | Msa1442940:CDS | 25.0% |
| ! | TTACTTAAGACCATTAATGA+AGG | - | tig0030242:30033-30052 | Msa1442940:intron | 25.0% |
| ! | AAAATTAGCTCCTTCATTAA+TGG | + | tig0030242:30046-30065 | None:intergenic | 25.0% |
| !! | ATTAATGAAGGAGCTAATTT+TGG | - | tig0030242:30045-30064 | Msa1442940:intron | 25.0% |
| ACTTGGTCTATTCTTAAGAT+AGG | + | tig0030242:27000-27019 | None:intergenic | 30.0% | |
| !! | ATTGGATAAGGTTCTAGAAA+TGG | - | tig0030242:27044-27063 | Msa1442940:three_prime_UTR | 30.0% |
| ! | GAAAAGAAGTTATGATGATG+AGG | - | tig0030242:27092-27111 | Msa1442940:three_prime_UTR | 30.0% |
| GGAATCTTGTATATAAGTCA+AGG | - | tig0030242:27328-27347 | Msa1442940:CDS | 30.0% | |
| TATATAAGTCAAGGTAGCAT+TGG | - | tig0030242:27337-27356 | Msa1442940:CDS | 30.0% | |
| TTAAACTGCTAACACAATAC+AGG | + | tig0030242:27542-27561 | None:intergenic | 30.0% | |
| GGTTATCAAATCAAAGAACA+TGG | - | tig0030242:27630-27649 | Msa1442940:CDS | 30.0% | |
| AAATTAGACCATGCTAAACT+GGG | - | tig0030242:27766-27785 | Msa1442940:CDS | 30.0% | |
| TCAGAATTCTAATCTGACTA+GGG | + | tig0030242:27805-27824 | None:intergenic | 30.0% | |
| TTCAGAATTCTAATCTGACT+AGG | + | tig0030242:27806-27825 | None:intergenic | 30.0% | |
| CGGTATGATGTAAATTAGAA+TGG | - | tig0030242:27929-27948 | Msa1442940:CDS | 30.0% | |
| TCTCAACAACCTAAAATTTC+AGG | - | tig0030242:28319-28338 | Msa1442940:CDS | 30.0% | |
| CAACTAAAATGTATCAGAGA+CGG | + | tig0030242:28347-28366 | None:intergenic | 30.0% | |
| !! | ATGAGGAAATTGATGATGAT+TGG | - | tig0030242:28591-28610 | Msa1442940:CDS | 30.0% |
| ! | AGATTTGCAAGTTAGTCTAA+AGG | - | tig0030242:28679-28698 | Msa1442940:CDS | 30.0% |
| TCTTATCCAGCTAGAATTAT+CGG | + | tig0030242:28738-28757 | None:intergenic | 30.0% | |
| TAACACCAAGTCTAAACTTT+CGG | + | tig0030242:28763-28782 | None:intergenic | 30.0% | |
| !! | AAAGTTTAGACTTGGTGTTA+AGG | - | tig0030242:28763-28782 | Msa1442940:CDS | 30.0% |
| TCTATGATCTTTAACAGCAA+AGG | + | tig0030242:28840-28859 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTAAAGATCATAG+AGG | - | tig0030242:28839-28858 | Msa1442940:CDS | 30.0% |
| ATATAGTAGAGTAAGAACGA+AGG | - | tig0030242:28916-28935 | Msa1442940:CDS | 30.0% | |
| TCAATATGAAGGCTATATTG+AGG | - | tig0030242:28950-28969 | Msa1442940:CDS | 30.0% | |
| CTTACACTTCTTAATTTCTG+TGG | + | tig0030242:29149-29168 | None:intergenic | 30.0% | |
| AACAACATATATGAGCTAAG+AGG | - | tig0030242:29400-29419 | Msa1442940:intron | 30.0% | |
| ! | GTGATTCTAAAGAAAAGAAC+TGG | + | tig0030242:29441-29460 | None:intergenic | 30.0% |
| ATCACTCACTTCAAATCAAA+AGG | - | tig0030242:29456-29475 | Msa1442940:intron | 30.0% | |
| TCTTTGACTAATTCCAAAAG+GGG | - | tig0030242:29661-29680 | Msa1442940:intron | 30.0% | |
| GGTGATAATAATCCTGAAAT+TGG | - | tig0030242:29889-29908 | Msa1442940:CDS | 30.0% | |
| GATAATAATCCTGAAATTGG+AGG | - | tig0030242:29892-29911 | Msa1442940:CDS | 30.0% | |
| GTAATTATTATCATGGAGAC+TGG | - | tig0030242:29914-29933 | Msa1442940:CDS | 30.0% | |
| TTAAGCTTAAAGCAGCTTTA+AGG | - | tig0030242:30178-30197 | Msa1442940:intron | 30.0% | |
| TGAGTTCAAATGCTTGAAAT+CGG | - | tig0030242:30261-30280 | Msa1442940:CDS | 30.0% | |
| TATGTGAAGAATACAACAGT+TGG | - | tig0030242:30364-30383 | Msa1442940:five_prime_UTR | 30.0% | |
| CAGAAGCAGAAAACAAATCT+TGG | + | tig0030242:26944-26963 | None:intergenic | 35.0% | |
| !! | AGATTTGTTTTCTGCTTCTG+TGG | - | tig0030242:26944-26963 | Msa1442940:three_prime_UTR | 35.0% |
| !! | GATTTGTTTTCTGCTTCTGT+GGG | - | tig0030242:26945-26964 | Msa1442940:three_prime_UTR | 35.0% |
| TTGAAATACCTAGCTAAACC+AGG | + | tig0030242:27159-27178 | None:intergenic | 35.0% | |
| GCAAATGTACAGTGTAATTG+TGG | - | tig0030242:27435-27454 | Msa1442940:CDS | 35.0% | |
| ! | TGTAATTGTGGAAGCTTTGA+AGG | - | tig0030242:27447-27466 | Msa1442940:CDS | 35.0% |
| !! | CTCACAATTTTTCTGAGAAG+AGG | + | tig0030242:27508-27527 | None:intergenic | 35.0% |
| GGGTCTATTATTGCATAGAA+CGG | + | tig0030242:27587-27606 | None:intergenic | 35.0% | |
| GAAATTAGACCATGCTAAAC+TGG | - | tig0030242:27765-27784 | Msa1442940:CDS | 35.0% | |
| ATATTGCGTACATTCATCCA+CGG | + | tig0030242:28029-28048 | None:intergenic | 35.0% | |
| !!! | CTGGAATCTGTGGTTTTTTT+AGG | + | tig0030242:28078-28097 | None:intergenic | 35.0% |
| AAAAATAAACCGAGACACGT+TGG | - | tig0030242:28138-28157 | Msa1442940:intron | 35.0% | |
| TGTGTTGAAAACTTGACAGA+AGG | + | tig0030242:28165-28184 | None:intergenic | 35.0% | |
| !!! | TGATACATTTTAGTTGTGCC+AGG | - | tig0030242:28351-28370 | Msa1442940:CDS | 35.0% |
| !! | GAGGCATTCTTGTTCTAAAA+TGG | + | tig0030242:28424-28443 | None:intergenic | 35.0% |
| ! | TTTAACTTCGCAACTGATTC+TGG | + | tig0030242:28545-28564 | None:intergenic | 35.0% |
| GAAGTTAAATGTTGTTGTGC+TGG | - | tig0030242:28556-28575 | Msa1442940:CDS | 35.0% | |
| TTAAATGTTGTTGTGCTGGA+AGG | - | tig0030242:28560-28579 | Msa1442940:CDS | 35.0% | |
| ! | TTGCAAGTTAGTCTAAAGGA+AGG | - | tig0030242:28683-28702 | Msa1442940:CDS | 35.0% |
| ATGAAGTTTGGAGATTGGAT+CGG | - | tig0030242:29036-29055 | Msa1442940:intron | 35.0% | |
| ATGATTAGAGAAGAGTGATG+TGG | + | tig0030242:29200-29219 | None:intergenic | 35.0% | |
| AAGTACCTGTATTGAAAAGG+TGG | + | tig0030242:29260-29279 | None:intergenic | 35.0% | |
| ! | ACCTTTTCAATACAGGTACT+TGG | - | tig0030242:29259-29278 | Msa1442940:intron | 35.0% |
| ACCAAGTACCTGTATTGAAA+AGG | + | tig0030242:29263-29282 | None:intergenic | 35.0% | |
| TGGAATGTCAAACAGAATGT+GGG | - | tig0030242:29285-29304 | Msa1442940:intron | 35.0% | |
| TGTAGATTCCTTGGTGAAAA+AGG | - | tig0030242:29588-29607 | Msa1442940:intron | 35.0% | |
| !! | ATCATATGCCTTTTTCACCA+AGG | + | tig0030242:29599-29618 | None:intergenic | 35.0% |
| GACCAAGTCATAGAATATGA+TGG | - | tig0030242:29625-29644 | Msa1442940:CDS | 35.0% | |
| CTCCATCATATTCTATGACT+TGG | + | tig0030242:29630-29649 | None:intergenic | 35.0% | |
| !! | TACAGATTTTGATCCCCTTT+TGG | + | tig0030242:29677-29696 | None:intergenic | 35.0% |
| GAATAACTACTCATCCAGTT+CGG | - | tig0030242:29804-29823 | Msa1442940:intron | 35.0% | |
| ACATCACAAATAGCATTACC+AGG | - | tig0030242:29844-29863 | Msa1442940:intron | 35.0% | |
| CATCACAAATAGCATTACCA+GGG | - | tig0030242:29845-29864 | Msa1442940:intron | 35.0% | |
| ACCATGAATTACAACATCTC+AGG | - | tig0030242:29868-29887 | Msa1442940:intron | 35.0% | |
| ACCTGAGATGTTGTAATTCA+TGG | + | tig0030242:29872-29891 | None:intergenic | 35.0% | |
| GCTTAGAAGTTCACAAATGT+TGG | - | tig0030242:29990-30009 | Msa1442940:intron | 35.0% | |
| AGAAGTTCACAAATGTTGGA+AGG | - | tig0030242:29994-30013 | Msa1442940:intron | 35.0% | |
| AGAATACAACAGTTGGTTGA+AGG | - | tig0030242:30371-30390 | Msa1442940:five_prime_UTR | 35.0% | |
| GCTTCTTTGACTGAGTAACA+TGG | + | tig0030242:27128-27147 | None:intergenic | 40.0% | |
| TCAAAGAAGCCAAAACTACC+TGG | - | tig0030242:27138-27157 | Msa1442940:CDS | 40.0% | |
| ! | CTAGCTAAACCAGGTAGTTT+TGG | + | tig0030242:27150-27169 | None:intergenic | 40.0% |
| CAAAACTACCTGGTTTAGCT+AGG | - | tig0030242:27148-27167 | Msa1442940:CDS | 40.0% | |
| !! | AATTGTGGAAGCTTTGAAGG+TGG | - | tig0030242:27450-27469 | Msa1442940:CDS | 40.0% |
| AGTTAATCGTTCTGATTCCG+TGG | - | tig0030242:27706-27725 | Msa1442940:CDS | 40.0% | |
| CTTACAGGTAAGTGAAGAAG+TGG | - | tig0030242:27729-27748 | Msa1442940:CDS | 40.0% | |
| TGATCACATGTAGCCCTTAA+CGG | - | tig0030242:27909-27928 | Msa1442940:intron | 40.0% | |
| TATTGCGTACATTCATCCAC+GGG | + | tig0030242:28028-28047 | None:intergenic | 40.0% | |
| ! | GTTTTTCATAGGGACTAAGC+TGG | + | tig0030242:28097-28116 | None:intergenic | 40.0% |
| ! | GTGTTACACTGAAGAGCATA+AGG | - | tig0030242:28233-28252 | Msa1442940:CDS | 40.0% |
| ! | GAGACGGATCCTGAAATTTT+AGG | + | tig0030242:28331-28350 | None:intergenic | 40.0% |
| AGTCATCCATGTTGTCTTGT+TGG | - | tig0030242:28487-28506 | Msa1442940:intron | 40.0% | |
| TTGGATCCAACAAGACAACA+TGG | + | tig0030242:28496-28515 | None:intergenic | 40.0% | |
| ! | TGTCTTGTTGGATCCAAACA+CGG | - | tig0030242:28499-28518 | Msa1442940:intron | 40.0% |
| TGAACAACATTTCCCGTGTT+TGG | + | tig0030242:28515-28534 | None:intergenic | 40.0% | |
| ACGGGAAATGTTGTTCAAGT+TGG | - | tig0030242:28518-28537 | Msa1442940:intron | 40.0% | |
| !! | GCTGGAAGGTGATTTTAATG+AGG | - | tig0030242:28574-28593 | Msa1442940:CDS | 40.0% |
| ! | CTTTGAAAGCCACGAAGTAA+AGG | - | tig0030242:28625-28644 | Msa1442940:CDS | 40.0% |
| TGCAAATCTCCAGTTAGAAG+TGG | + | tig0030242:28668-28687 | None:intergenic | 40.0% | |
| ! | GTTAGTCTAAAGGAAGGAGT+AGG | - | tig0030242:28689-28708 | Msa1442940:CDS | 40.0% |
| AAGGAAGGAGTAGGAACATT+AGG | - | tig0030242:28698-28717 | Msa1442940:CDS | 40.0% | |
| CTTTCACCGATAATTCTAGC+TGG | - | tig0030242:28729-28748 | Msa1442940:CDS | 40.0% | |
| AGAAGCCGAAAGTTTAGACT+TGG | - | tig0030242:28755-28774 | Msa1442940:CDS | 40.0% | |
| !! | GTTTAGACTTGGTGTTAAGG+TGG | - | tig0030242:28766-28785 | Msa1442940:CDS | 40.0% |
| CAAACTTCATCATGCAAAGC+AGG | + | tig0030242:29026-29045 | None:intergenic | 40.0% | |
| CTGCTTTGCATGATGAAGTT+TGG | - | tig0030242:29024-29043 | Msa1442940:intron | 40.0% | |
| GCATGATGAAGTTTGGAGAT+TGG | - | tig0030242:29031-29050 | Msa1442940:intron | 40.0% | |
| AAGACGCAGGAAATCTTCTA+CGG | + | tig0030242:29114-29133 | None:intergenic | 40.0% | |
| TTCTTAATTTCTGTGGCTCG+CGG | + | tig0030242:29142-29161 | None:intergenic | 40.0% | |
| TTAGAGAAGAGTGATGTGGA+TGG | + | tig0030242:29196-29215 | None:intergenic | 40.0% | |
| ! | GTTTGCCACCTTTTCAATAC+AGG | - | tig0030242:29252-29271 | Msa1442940:intron | 40.0% |
| TCAATACAGGTACTTGGTAG+TGG | - | tig0030242:29265-29284 | Msa1442940:intron | 40.0% | |
| GTGGAATGTCAAACAGAATG+TGG | - | tig0030242:29284-29303 | Msa1442940:intron | 40.0% | |
| CATGCTAAGACATGTGTGTT+GGG | - | tig0030242:29322-29341 | Msa1442940:intron | 40.0% | |
| ACTGATGAAACTCATAGCAC+TGG | - | tig0030242:29367-29386 | Msa1442940:intron | 40.0% | |
| ATCCAGTTCGGATTATCAGA+CGG | - | tig0030242:29816-29835 | Msa1442940:intron | 40.0% | |
| ATGTTGTAATTCATGGTCCC+TGG | + | tig0030242:29865-29884 | None:intergenic | 40.0% | |
| !! | ATTATCATGGAGACTGGTCT+AGG | - | tig0030242:29920-29939 | Msa1442940:CDS | 40.0% |
| ACATTGTCGCAGAAGAACTT+CGG | - | tig0030242:29968-29987 | Msa1442940:intron | 40.0% | |
| TGGAAGGTGATGATATGCAA+AGG | - | tig0030242:30010-30029 | Msa1442940:intron | 40.0% | |
| CTGAACGAATGATACATCTG+AGG | + | tig0030242:30114-30133 | None:intergenic | 40.0% | |
| AGGATAATGTCAAGTGCTCA+GGG | - | tig0030242:30136-30155 | Msa1442940:intron | 40.0% | |
| !! | AGCTTAAAGCAGCTTTAAGG+TGG | - | tig0030242:30181-30200 | Msa1442940:intron | 40.0% |
| !! | GCTTAAAGCAGCTTTAAGGT+GGG | - | tig0030242:30182-30201 | Msa1442940:intron | 40.0% |
| !! | CTTAAAGCAGCTTTAAGGTG+GGG | - | tig0030242:30183-30202 | Msa1442940:intron | 40.0% |
| ! | TTTCAAGTGCTTGAAACGAG+TGG | + | tig0030242:30295-30314 | None:intergenic | 40.0% |
| TTGTTCAATACTGCAGTTGG+TGG | + | tig0030242:30426-30445 | None:intergenic | 40.0% | |
| ! | GGTTTGTTCAATACTGCAGT+TGG | + | tig0030242:30429-30448 | None:intergenic | 40.0% |
| GCAAAGACTCTGCTCATCTT+TGG | - | tig0030242:27480-27499 | Msa1442940:CDS | 45.0% | |
| CTTCACTTACCTGTAAGCCA+CGG | + | tig0030242:27726-27745 | None:intergenic | 45.0% | |
| ATGCCTCCTCACTTATTCAC+AGG | - | tig0030242:28437-28456 | Msa1442940:intron | 45.0% | |
| CTCCTCACTTATTCACAGGA+GGG | - | tig0030242:28441-28460 | Msa1442940:intron | 45.0% | |
| TTCCCTCCTGTGAATAAGTG+AGG | + | tig0030242:28446-28465 | None:intergenic | 45.0% | |
| TCACTTATTCACAGGAGGGA+AGG | - | tig0030242:28445-28464 | Msa1442940:intron | 45.0% | |
| ! | GTCTTGTTGGATCCAAACAC+GGG | - | tig0030242:28500-28519 | Msa1442940:intron | 45.0% |
| CACGAAGTAAAGGAACGTGA+GGG | - | tig0030242:28635-28654 | Msa1442940:CDS | 45.0% | |
| ACGAAGTAAAGGAACGTGAG+GGG | - | tig0030242:28636-28655 | Msa1442940:CDS | 45.0% | |
| TAAAGGAACGTGAGGGGAAA+AGG | - | tig0030242:28642-28661 | Msa1442940:CDS | 45.0% | |
| ACTTCATCATGCAAAGCAGG+TGG | + | tig0030242:29023-29042 | None:intergenic | 45.0% | |
| GAGATTGGATCGGATAGCAA+AGG | - | tig0030242:29046-29065 | Msa1442940:intron | 45.0% | |
| TTGGATCGGATAGCAAAGGA+TGG | - | tig0030242:29050-29069 | Msa1442940:intron | 45.0% | |
| GCATGCTAAGACATGTGTGT+TGG | - | tig0030242:29321-29340 | Msa1442940:intron | 45.0% | |
| CTAAGAGGTCTCATTGCTGA+TGG | - | tig0030242:29415-29434 | Msa1442940:intron | 45.0% | |
| GCAGATGTCTGTAGATTCCT+TGG | - | tig0030242:29579-29598 | Msa1442940:intron | 45.0% | |
| CAGCAGTATGCATCTGCAAA+GGG | - | tig0030242:29733-29752 | Msa1442940:intron | 45.0% | |
| AGTATGCATCTGCAAAGGGA+AGG | - | tig0030242:29737-29756 | Msa1442940:intron | 45.0% | |
| GTATGCATCTGCAAAGGGAA+GGG | - | tig0030242:29738-29757 | Msa1442940:intron | 45.0% | |
| TACCGTCTGATAATCCGAAC+TGG | + | tig0030242:29821-29840 | None:intergenic | 45.0% | |
| GTTCGGATTATCAGACGGTA+CGG | - | tig0030242:29821-29840 | Msa1442940:intron | 45.0% | |
| GATGTATCATTCGTTCAGCG+AGG | - | tig0030242:30116-30135 | Msa1442940:intron | 45.0% | |
| GAGGATAATGTCAAGTGCTC+AGG | - | tig0030242:30135-30154 | Msa1442940:intron | 45.0% | |
| TAATGTCAAGTGCTCAGGGA+AGG | - | tig0030242:30140-30159 | Msa1442940:intron | 45.0% | |
| TGCTTCTGTGGGAAGCTTCT+TGG | - | tig0030242:26956-26975 | Msa1442940:three_prime_UTR | 50.0% | |
| GCTTCTGTGGGAAGCTTCTT+GGG | - | tig0030242:26957-26976 | Msa1442940:three_prime_UTR | 50.0% | |
| CTTCTGTGGGAAGCTTCTTG+GGG | - | tig0030242:26958-26977 | Msa1442940:three_prime_UTR | 50.0% | |
| GTTCTGATTCCGTGGCTTAC+AGG | - | tig0030242:27714-27733 | Msa1442940:CDS | 50.0% | |
| TGAAGAAGTGGAGCGTGCTT+TGG | - | tig0030242:27741-27760 | Msa1442940:CDS | 50.0% | |
| ACCATGCTAAACTGGGTGAC+AGG | - | tig0030242:27773-27792 | Msa1442940:CDS | 50.0% | |
| ACCTGTCACCCAGTTTAGCA+TGG | + | tig0030242:27777-27796 | None:intergenic | 50.0% | |
| AGGGACTAAGCTGGAATCTG+TGG | + | tig0030242:28088-28107 | None:intergenic | 50.0% | |
| ACAGAAGGACCAACGTGTCT+CGG | + | tig0030242:28150-28169 | None:intergenic | 50.0% | |
| TATTCTTGGCGGTGAAGACC+TGG | + | tig0030242:28372-28391 | None:intergenic | 50.0% | |
| CCTGGTGCTTCTATTCTTGG+CGG | + | tig0030242:28383-28402 | None:intergenic | 50.0% | |
| !! | CGCCAAGAATAGAAGCACCA+GGG | - | tig0030242:28381-28400 | Msa1442940:CDS | 50.0% |
| !! | GCCAAGAATAGAAGCACCAG+GGG | - | tig0030242:28382-28401 | Msa1442940:CDS | 50.0% |
| TCCCCTGGTGCTTCTATTCT+TGG | + | tig0030242:28386-28405 | None:intergenic | 50.0% | |
| ! | AGCTGCAGATTCTTTTCCCC+TGG | + | tig0030242:28401-28420 | None:intergenic | 50.0% |
| CCTCCTGTGAATAAGTGAGG+AGG | + | tig0030242:28443-28462 | None:intergenic | 50.0% | |
| CCTCCTCACTTATTCACAGG+AGG | - | tig0030242:28440-28459 | Msa1442940:intron | 50.0% | |
| ATTCACAGGAGGGAAGGTTG+AGG | - | tig0030242:28451-28470 | Msa1442940:intron | 50.0% | |
| TTCACAGGAGGGAAGGTTGA+GGG | - | tig0030242:28452-28471 | Msa1442940:intron | 50.0% | |
| CCTCACGTTCCTTTACTTCG+TGG | + | tig0030242:28637-28656 | None:intergenic | 50.0% | |
| CCACGAAGTAAAGGAACGTG+AGG | - | tig0030242:28634-28653 | Msa1442940:CDS | 50.0% | |
| GGGAAAAGGCCACTTCTAAC+TGG | - | tig0030242:28656-28675 | Msa1442940:CDS | 50.0% | |
| GTGGCTCCTGGATATTGTGA+CGG | - | tig0030242:28785-28804 | Msa1442940:CDS | 50.0% | |
| TGGCTCCTGGATATTGTGAC+GGG | - | tig0030242:28786-28805 | Msa1442940:CDS | 50.0% | |
| CGAATCCCGTCACAATATCC+AGG | + | tig0030242:28794-28813 | None:intergenic | 50.0% | |
| CAGAATGTGGGAGAACACTG+TGG | - | tig0030242:29297-29316 | Msa1442940:intron | 50.0% | |
| CAGATGCATACTGCTGCTCT+TGG | + | tig0030242:29729-29748 | None:intergenic | 50.0% | |
| GCAGCAGTATGCATCTGCAA+AGG | - | tig0030242:29732-29751 | Msa1442940:intron | 50.0% | |
| !! | GACTGGTCTAGGCAGAGAAA+CGG | - | tig0030242:29931-29950 | Msa1442940:intron | 50.0% |
| TCTAGGCAGAGAAACGGACA+AGG | - | tig0030242:29937-29956 | Msa1442940:intron | 50.0% | |
| CTAGGCAGAGAAACGGACAA+GGG | - | tig0030242:29938-29957 | Msa1442940:intron | 50.0% | |
| GTTAGGCATGATGACACCCG+TGG | - | tig0030242:28009-28028 | Msa1442940:CDS | 55.0% | |
| !! | CCGCCAAGAATAGAAGCACC+AGG | - | tig0030242:28380-28399 | Msa1442940:CDS | 55.0% |
| !! | CTTGGTGTTAAGGTGGCTCC+TGG | - | tig0030242:28773-28792 | Msa1442940:CDS | 55.0% |
| GCAGAGAAACGGACAAGGGT+TGG | - | tig0030242:29942-29961 | Msa1442940:intron | 55.0% | |
| TGCTCAGGGAAGGCTGTTGT+TGG | - | tig0030242:30150-30169 | Msa1442940:intron | 55.0% | |
| GCTCAGGGAAGGCTGTTGTT+GGG | - | tig0030242:30151-30170 | Msa1442940:intron | 55.0% | |
| GGGAAGGTTGAGGGAGAGCA+AGG | - | tig0030242:28461-28480 | Msa1442940:intron | 60.0% | |
| TGACGGGATTCGAGTGCGTG+AGG | - | tig0030242:28802-28821 | Msa1442940:CDS | 60.0% | |
| GACGGGATTCGAGTGCGTGA+GGG | - | tig0030242:28803-28822 | Msa1442940:CDS | 60.0% | |
| CAGGGAAGGCTGTTGTTGGG+TGG | - | tig0030242:30154-30173 | Msa1442940:intron | 60.0% | |
| GCTCGCGGACAAGAAGACGC+AGG | + | tig0030242:29127-29146 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030242 | gene | 26800 | 30592 | 26800 | ID=Msa1442940;Name=Msa1442940 |
| tig0030242 | mRNA | 26800 | 30592 | 26800 | ID=Msa1442940-mRNA-1;Parent=Msa1442940;Name=Msa1442940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=263|0.85|0.87|1|0.85|0.75|8|309|607 |
| tig0030242 | exon | 26800 | 26999 | 26800 | ID=Msa1442940-mRNA-1:exon:13623;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 27020 | 27809 | 27020 | ID=Msa1442940-mRNA-1:exon:13622;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 27915 | 28118 | 27915 | ID=Msa1442940-mRNA-1:exon:13621;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 28229 | 28431 | 28229 | ID=Msa1442940-mRNA-1:exon:13620;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 28526 | 29019 | 28526 | ID=Msa1442940-mRNA-1:exon:13619;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 29598 | 29656 | 29598 | ID=Msa1442940-mRNA-1:exon:13618;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 29870 | 29945 | 29870 | ID=Msa1442940-mRNA-1:exon:13617;Parent=Msa1442940-mRNA-1 |
| tig0030242 | exon | 30223 | 30592 | 30223 | ID=Msa1442940-mRNA-1:exon:13616;Parent=Msa1442940-mRNA-1 |
| tig0030242 | five_prime_UTR | 30330 | 30592 | 30330 | ID=Msa1442940-mRNA-1:five_prime_utr;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 30223 | 30329 | 30223 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 29870 | 29945 | 29870 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 29598 | 29656 | 29598 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 28526 | 29019 | 28526 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 28229 | 28431 | 28229 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 27915 | 28118 | 27915 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | CDS | 27129 | 27809 | 27129 | ID=Msa1442940-mRNA-1:cds;Parent=Msa1442940-mRNA-1 |
| tig0030242 | three_prime_UTR | 27020 | 27128 | 27020 | ID=Msa1442940-mRNA-1:three_prime_utr;Parent=Msa1442940-mRNA-1 |
| tig0030242 | three_prime_UTR | 26800 | 26999 | 26800 | ID=Msa1442940-mRNA-1:three_prime_utr;Parent=Msa1442940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
