Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212340 | XP_024629325.1 | 76.056 | 355 | 73 | 5 | 1 | 347 | 1 | 351 | 2.19e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212340 | A0A396GPQ1 | 76.056 | 355 | 73 | 5 | 1 | 347 | 1 | 351 | 1.04e-159 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212340 | Msa0212400 | 0.979206 | 1.834875e-147 | -8.615850e-47 |
| Msa0212340 | Msa0291070 | 0.962740 | 3.072291e-121 | -8.615850e-47 |
| Msa0212340 | Msa0298110 | 0.804158 | 2.470499e-49 | -8.615850e-47 |
| Msa0212340 | Msa0329630 | 0.958098 | 5.446599e-116 | -8.615850e-47 |
| Msa0212340 | Msa1203030 | 0.821873 | 3.202345e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212340 | MtrunA17_Chr8g0373411 | 76.056 | 355 | 73 | 5 | 1 | 347 | 1 | 351 | 2.01e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATCAACCATTGTCAAAA+TGG | 0.188055 | 2_1:+54402230 | None:intergenic |
| TGGAGGAGGGTTTGTTTGTT+AGG | 0.253291 | 2_1:+54402662 | None:intergenic |
| ACGACTTTCGATTTGGAGTA+TGG | 0.269103 | 2_1:+54402194 | None:intergenic |
| ACGACTTTCGATTTGGAGTA+TGG | 0.269103 | 2_1:+54402584 | None:intergenic |
| AAGTCGTATCGATAAATTAA+TGG | 0.313006 | 2_1:-54402568 | Msa0212340:CDS |
| TTAGCGGCGGCTGGCGGTGG+AGG | 0.345735 | 2_1:+54402645 | None:intergenic |
| TTAGCGGCGGCCGGCGGTGG+AGG | 0.347728 | 2_1:+54402435 | None:intergenic |
| GGAGATCCGGGTTTGATTCT+CGG | 0.354677 | 2_1:-54397835 | Msa0212340:three_prime_UTR |
| GCGGCGGCCGGCGGTGGAGG+AGG | 0.356060 | 2_1:+54402438 | None:intergenic |
| GCGGCGGCTGGCGGTGGAGG+AGG | 0.358056 | 2_1:+54402648 | None:intergenic |
| CTCACGAATAACTTCTTTGT+TGG | 0.358997 | 2_1:+54402143 | None:intergenic |
| TATCGATACGACTTTCGATT+TGG | 0.359518 | 2_1:+54402577 | None:intergenic |
| CAGTTTGACAATGGTTGATT+CGG | 0.363585 | 2_1:-54402619 | Msa0212340:exon |
| GAGATCCGGGTTAGGATATC+TGG | 0.363671 | 2_1:-54397868 | Msa0212340:three_prime_UTR |
| GAATTAGCGGCGGCTGGCGG+TGG | 0.370125 | 2_1:+54402642 | None:intergenic |
| ACCTGATGATTACAGAAATC+TGG | 0.371292 | 2_1:-54401854 | Msa0212340:CDS |
| GAATTAGCGGCGGCCGGCGG+TGG | 0.372608 | 2_1:+54402432 | None:intergenic |
| TATCGATACGACTTTCGATT+TGG | 0.375478 | 2_1:+54402187 | None:intergenic |
| CGAATCAACCATTGTCAAAC+TGG | 0.391661 | 2_1:+54402620 | None:intergenic |
| AAAATCAACCATTGTCGAAC+TGG | 0.403034 | 2_1:+54402410 | None:intergenic |
| ACGAATACCTTGTTCATTGT+TGG | 0.403307 | 2_1:+54402536 | None:intergenic |
| CAGGTTTCGAAACAAATTGA+TGG | 0.406467 | 2_1:+54401872 | None:intergenic |
| GCGGTGGAGGAGGGTTTGTA+AGG | 0.409449 | 2_1:+54402448 | None:intergenic |
| TCCAGATTTCTGTAATCATC+AGG | 0.413475 | 2_1:+54401853 | None:intergenic |
| TACAGGCATATCCAACCAAC+AGG | 0.414999 | 2_1:-54402332 | Msa0212340:CDS |
| AGTGAACAAACTCCTTCATT+TGG | 0.419970 | 2_1:+54398070 | None:intergenic |
| CGTGAGTTGAAGAGGCTTAG+TGG | 0.427587 | 2_1:-54402126 | Msa0212340:CDS |
| TGTCTCGACTATTAGATTGC+TGG | 0.436263 | 2_1:+54398471 | None:intergenic |
| AAACCCTCATCCACCACAAC+CGG | 0.443154 | 2_1:-54402265 | Msa0212340:CDS |
| GGATTAGCGTCGGCCGGTTG+TGG | 0.443586 | 2_1:+54402252 | None:intergenic |
| CGGCGGCTGGCGGTGGAGGA+GGG | 0.444108 | 2_1:+54402649 | None:intergenic |
| CGGCGGCCGGCGGTGGAGGA+GGG | 0.453878 | 2_1:+54402439 | None:intergenic |
| GGATTAAACAAACTATGTTC+TGG | 0.457730 | 2_1:+54401964 | None:intergenic |
| ACGAATAACTTCTTTGTTGG+TGG | 0.458657 | 2_1:+54402146 | None:intergenic |
| TAAAATGCAATAGGTTCTGA+TGG | 0.462667 | 2_1:-54398178 | Msa0212340:intron |
| TCGGCCGGTTGTGGTGGATG+AGG | 0.465572 | 2_1:+54402261 | None:intergenic |
| ATAACTTCTTTGTTGGTGGT+TGG | 0.466863 | 2_1:+54402150 | None:intergenic |
| TAATAGTCGAGATCCGGGTT+AGG | 0.472037 | 2_1:-54397876 | Msa0212340:three_prime_UTR |
| TTGAGGACTTACTTCAAAGT+TGG | 0.473329 | 2_1:+54401586 | None:intergenic |
| ATTAGATTGCTGGCCATTGT+TGG | 0.475028 | 2_1:+54398481 | None:intergenic |
| GGAACAAATTATTAGTGAGT+TGG | 0.481276 | 2_1:-54402310 | Msa0212340:CDS |
| CGCTAATTCCAGTTCGACAA+TGG | 0.485959 | 2_1:-54402418 | Msa0212340:CDS |
| GAATCAACCATTGTCAAAAT+GGG | 0.486080 | 2_1:+54402231 | None:intergenic |
| TCGTGGCTTGAACGCAATCC+TGG | 0.486195 | 2_1:-54401790 | Msa0212340:CDS |
| AGGTGATGATGCTGTGATGC+TGG | 0.487466 | 2_1:-54398115 | Msa0212340:CDS |
| ACTAATAATTTGTTCCCTGT+TGG | 0.487749 | 2_1:+54402317 | None:intergenic |
| CGATCGTATCTATCAACTAC+AGG | 0.488463 | 2_1:-54402349 | Msa0212340:CDS |
| GAGAATCAAACCCGGATCTC+CGG | 0.494063 | 2_1:+54397837 | None:intergenic |
| AGGACTTACTTCAAAGTTGG+CGG | 0.494921 | 2_1:+54401589 | None:intergenic |
| TCAGACACCGGAAATGGAAA+GGG | 0.498482 | 2_1:-54398516 | Msa0212340:intron |
| CGGCCGGTTGTGGTGGATGA+GGG | 0.499241 | 2_1:+54402262 | None:intergenic |
| AGAAGCATCGGATCACCATC+AGG | 0.500172 | 2_1:+54401922 | None:intergenic |
| CTACTGCCTTTCAAAATAGC+TGG | 0.500559 | 2_1:+54397904 | None:intergenic |
| GGTTCTGATGGGTTTGCCGT+TGG | 0.507165 | 2_1:-54398166 | Msa0212340:CDS |
| TTCAGACACCGGAAATGGAA+AGG | 0.511032 | 2_1:-54398517 | Msa0212340:intron |
| ATAATTTGTTCCCTGTTGGT+TGG | 0.514061 | 2_1:+54402321 | None:intergenic |
| CGCTAATTCCAGTTTGACAA+TGG | 0.515282 | 2_1:-54402628 | Msa0212340:exon |
| GATGAAGATGCTAGAGCAAA+AGG | 0.518055 | 2_1:-54398135 | Msa0212340:CDS |
| AAGTTATTCGTGAGTTGAAG+AGG | 0.523412 | 2_1:-54402134 | Msa0212340:CDS |
| AAACTGGAATTAGCGGCGGC+TGG | 0.530827 | 2_1:+54402636 | None:intergenic |
| ATACCTTGTTCATTGTTGGT+TGG | 0.548488 | 2_1:+54402540 | None:intergenic |
| TTAGCGTCGGCCGGTTGTGG+TGG | 0.548554 | 2_1:+54402255 | None:intergenic |
| CCGGGTTTGATTCTCGGCAA+TGG | 0.553127 | 2_1:-54397829 | Msa0212340:three_prime_UTR |
| TACAAACCCTCCTCCACCGC+CGG | 0.553250 | 2_1:-54402445 | Msa0212340:CDS |
| CATTGTCAAACTGGAATTAG+CGG | 0.554257 | 2_1:+54402629 | None:intergenic |
| AAAATGCAATAGGTTCTGAT+GGG | 0.560085 | 2_1:-54398177 | Msa0212340:intron |
| CATTGTCGAACTGGAATTAG+CGG | 0.561644 | 2_1:+54402419 | None:intergenic |
| ACTATGTTCTGGTGAAGCAA+AGG | 0.570024 | 2_1:+54401975 | None:intergenic |
| GAACTGGAATTAGCGGCGGC+CGG | 0.573910 | 2_1:+54402426 | None:intergenic |
| CTGGAATTAGCGGCGGCCGG+CGG | 0.578842 | 2_1:+54402429 | None:intergenic |
| ATTGAGAAAACTTGTGTCGT+TGG | 0.579887 | 2_1:-54402018 | Msa0212340:CDS |
| ATAGCTGGTAGTATTGAGAA+AGG | 0.584255 | 2_1:+54397919 | None:intergenic |
| AAGTCGTATCGATAAACTAA+AGG | 0.586014 | 2_1:-54402178 | Msa0212340:CDS |
| ACTTACTTCAAAGTTGGCGG+CGG | 0.600192 | 2_1:+54401592 | None:intergenic |
| GAGATGTTAGAGCCAAATGA+AGG | 0.610586 | 2_1:-54398082 | Msa0212340:three_prime_UTR |
| TCTTAATTGTAGTACTAGTG+TGG | 0.613934 | 2_1:-54397999 | Msa0212340:three_prime_UTR |
| TCTTCATCATCATGCTCCAA+CGG | 0.617314 | 2_1:+54398150 | None:intergenic |
| AAAATGGGATTAGCGTCGGC+CGG | 0.620552 | 2_1:+54402246 | None:intergenic |
| TCGTATCGATAAACTAAAGG+AGG | 0.621892 | 2_1:-54402175 | Msa0212340:CDS |
| CTGGAATTAGCGGCGGCTGG+CGG | 0.623774 | 2_1:+54402639 | None:intergenic |
| TCTGTATCAATGCTAAGTCG+TGG | 0.641490 | 2_1:-54401807 | Msa0212340:CDS |
| TGTCAAAATGGGATTAGCGT+CGG | 0.644494 | 2_1:+54402242 | None:intergenic |
| CCATTGCCGAGAATCAAACC+CGG | 0.652634 | 2_1:+54397829 | None:intergenic |
| AAAAGCCAGATATCCTAACC+CGG | 0.662428 | 2_1:+54397863 | None:intergenic |
| GATCCAACCAACAATGAACA+AGG | 0.663048 | 2_1:-54402543 | Msa0212340:CDS |
| ACACTCAAATCATTAACACC+AGG | 0.670543 | 2_1:+54401772 | None:intergenic |
| TGTCAAACTGGAATTAGCGG+CGG | 0.685168 | 2_1:+54402632 | None:intergenic |
| TGTCGAACTGGAATTAGCGG+CGG | 0.685336 | 2_1:+54402422 | None:intergenic |
| ACAGGCATATCCAACCAACA+GGG | 0.734249 | 2_1:-54402331 | Msa0212340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAGAATTTTAAATT+TGG | - | chr2_1:54398898-54398917 | Msa0212340:intron | 10.0% |
| !!! | TCATAATAATTTTATTGTTT+TGG | + | chr2_1:54399494-54399513 | None:intergenic | 10.0% |
| !! | TACTAGATAATATATAATAT+TGG | - | chr2_1:54399755-54399774 | Msa0212340:intron | 10.0% |
| !! | TAAAATTAGTTATATTACCT+TGG | - | chr2_1:54398922-54398941 | Msa0212340:intron | 15.0% |
| !! | AATTATGACTAAATTATCAT+TGG | - | chr2_1:54399066-54399085 | Msa0212340:intron | 15.0% |
| !! | ATTATGACTAAATTATCATT+GGG | - | chr2_1:54399067-54399086 | Msa0212340:intron | 15.0% |
| !!! | TTTGTTAATTTATTTTAGTG+TGG | - | chr2_1:54399209-54399228 | Msa0212340:intron | 15.0% |
| !! | AATAATATTGATGAACAATA+AGG | + | chr2_1:54399375-54399394 | None:intergenic | 15.0% |
| !! | AGATATTCAAATTTATTGTA+TGG | + | chr2_1:54401059-54401078 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTTTTCTTTTCT+GGG | + | chr2_1:54397750-54397769 | None:intergenic | 20.0% |
| !! | TCTTCTTACTAAAAATGATT+TGG | - | chr2_1:54398544-54398563 | Msa0212340:intron | 20.0% |
| !!! | ATTAATTTGCATGTTTTTTC+AGG | - | chr2_1:54398810-54398829 | Msa0212340:intron | 20.0% |
| !! | GATAATTTAGTCATGATTTA+GGG | + | chr2_1:54399112-54399131 | None:intergenic | 20.0% |
| !! | TGATAATTTAGTCATGATTT+AGG | + | chr2_1:54399113-54399132 | None:intergenic | 20.0% |
| !! | AATCATGACTAAATTATCAT+TGG | - | chr2_1:54399114-54399133 | Msa0212340:intron | 20.0% |
| !! | ATCATGACTAAATTATCATT+GGG | - | chr2_1:54399115-54399134 | Msa0212340:intron | 20.0% |
| !! | CAATATTATTCAGTATATAG+TGG | - | chr2_1:54399385-54399404 | Msa0212340:intron | 20.0% |
| !! | AAAAATTCTACAACTAACAA+TGG | + | chr2_1:54399462-54399481 | None:intergenic | 20.0% |
| !! | ATGTTGTTATATCGTATTTA+TGG | - | chr2_1:54399705-54399724 | Msa0212340:intron | 20.0% |
| !! | TAAGTAGTTTACTGTTAAAT+TGG | - | chr2_1:54399983-54400002 | Msa0212340:intron | 20.0% |
| !! | AATTACCAAACATTATTCTT+TGG | + | chr2_1:54402245-54402264 | None:intergenic | 20.0% |
| !! | GTAATTGATTAAAATGCAAT+AGG | - | chr2_1:54402259-54402278 | Msa0212340:CDS | 20.0% |
| !!! | GTGGTTTTTTTTTTCTTTTC+TGG | + | chr2_1:54397751-54397770 | None:intergenic | 25.0% |
| !! | AAGTCGTATCGATAAATTAA+TGG | - | chr2_1:54397878-54397897 | Msa0212340:three_prime_UTR | 25.0% |
| !!! | TTTTTAGTAAGAAGAAGCAT+CGG | + | chr2_1:54398539-54398558 | None:intergenic | 25.0% |
| ! | AGTTATATTACCTTGGTTAT+TGG | - | chr2_1:54398929-54398948 | Msa0212340:intron | 25.0% |
| ! | AACAGAAATAAACAAATGAC+AGG | + | chr2_1:54399284-54399303 | None:intergenic | 25.0% |
| ! | AGGTAAAACTTTAACTATGT+TGG | + | chr2_1:54399786-54399805 | None:intergenic | 25.0% |
| !! | ACATAGTTAAAGTTTTACCT+TGG | - | chr2_1:54399786-54399805 | Msa0212340:intron | 25.0% |
| ! | TTTGGAAGTTCAAATAATCA+AGG | + | chr2_1:54399812-54399831 | None:intergenic | 25.0% |
| !!! | TGTGTTGTTATTTGGAATTT+TGG | - | chr2_1:54399854-54399873 | Msa0212340:intron | 25.0% |
| !!! | TTGTTATTTGGAATTTTGGA+TGG | - | chr2_1:54399858-54399877 | Msa0212340:intron | 25.0% |
| ! | TTTGCTGCTAATTTACTATT+TGG | - | chr2_1:54400174-54400193 | Msa0212340:intron | 25.0% |
| ! | TTGCTGCTAATTTACTATTT+GGG | - | chr2_1:54400175-54400194 | Msa0212340:intron | 25.0% |
| ! | TAGAATCATTGGTCAAAATA+GGG | + | chr2_1:54400220-54400239 | None:intergenic | 25.0% |
| ! | ATAGAATCATTGGTCAAAAT+AGG | + | chr2_1:54400221-54400240 | None:intergenic | 25.0% |
| !!! | TAGCTTCTCAATTTTTGTTT+TGG | + | chr2_1:54400633-54400652 | None:intergenic | 25.0% |
| ! | TTGGATTCTCTTTATTAATG+TGG | - | chr2_1:54401116-54401135 | Msa0212340:intron | 25.0% |
| ! | TGGATTCTCTTTATTAATGT+GGG | - | chr2_1:54401117-54401136 | Msa0212340:intron | 25.0% |
| ! | AATTGTCAACTAGAGTTTAT+AGG | - | chr2_1:54401204-54401223 | Msa0212340:intron | 25.0% |
| ! | ACATGGAAAACAGAAATAAA+AGG | + | chr2_1:54401247-54401266 | None:intergenic | 25.0% |
| ! | TATCAATCAAAAACATGTCT+GGG | + | chr2_1:54401422-54401441 | None:intergenic | 25.0% |
| !!! | ACATGTTTTTGATTGATACT+TGG | - | chr2_1:54401424-54401443 | Msa0212340:intron | 25.0% |
| !! | ATACTTGGACTAAATTTTGA+GGG | - | chr2_1:54401439-54401458 | Msa0212340:intron | 25.0% |
| ! | ACATAACAGAATGCAATTAA+AGG | + | chr2_1:54401475-54401494 | None:intergenic | 25.0% |
| ! | TAAGTCATTTACATTGTTGT+GGG | - | chr2_1:54401597-54401616 | Msa0212340:intron | 25.0% |
| ! | CAAAACCAAAGAATAATGTT+TGG | - | chr2_1:54402237-54402256 | Msa0212340:CDS | 25.0% |
| !! | ACTAATAATTTGTTCCCTGT+TGG | + | chr2_1:54398132-54398151 | None:intergenic | 30.0% |
| GGAACAAATTATTAGTGAGT+TGG | - | chr2_1:54398136-54398155 | Msa0212340:CDS | 30.0% | |
| GAATCAACCATTGTCAAAAT+GGG | + | chr2_1:54398218-54398237 | None:intergenic | 30.0% | |
| !! | CATTTTGACAATGGTTGATT+CGG | - | chr2_1:54398217-54398236 | Msa0212340:intron | 30.0% |
| ! | AAGTCGTATCGATAAACTAA+AGG | - | chr2_1:54398268-54398287 | Msa0212340:intron | 30.0% |
| ! | TTTCTCAATCATCTTTTCCA+AGG | + | chr2_1:54398417-54398436 | None:intergenic | 30.0% |
| GGATTAAACAAACTATGTTC+TGG | + | chr2_1:54398485-54398504 | None:intergenic | 30.0% | |
| ! | GGAAAGATAAAAAGCATATC+TGG | + | chr2_1:54398506-54398525 | None:intergenic | 30.0% |
| !! | ATGCTTTTTATCTTTCCTGA+TGG | - | chr2_1:54398509-54398528 | Msa0212340:CDS | 30.0% |
| !!! | AATTTGCATGTTTTTTCAGG+AGG | - | chr2_1:54398813-54398832 | Msa0212340:intron | 30.0% |
| ! | AAGTAAGTCCTCAATTTGTT+TGG | - | chr2_1:54398869-54398888 | Msa0212340:intron | 30.0% |
| TTGGTTATTGGTACTGTTAT+GGG | - | chr2_1:54398941-54398960 | Msa0212340:intron | 30.0% | |
| TAAATTGCAACTGTGTGAAT+CGG | + | chr2_1:54398985-54399004 | None:intergenic | 30.0% | |
| AATTAAGAGGCAAGAGATTT+AGG | + | chr2_1:54399435-54399454 | None:intergenic | 30.0% | |
| TAACAATGGCATCAATTAAG+AGG | + | chr2_1:54399448-54399467 | None:intergenic | 30.0% | |
| TCCATTTCATAGAAACAAAC+TGG | + | chr2_1:54399619-54399638 | None:intergenic | 30.0% | |
| !! | AGTTTGTTTCTATGAAATGG+AGG | - | chr2_1:54399618-54399637 | Msa0212340:intron | 30.0% |
| TGAACTTCCAAATTATGTGA+AGG | - | chr2_1:54399820-54399839 | Msa0212340:intron | 30.0% | |
| !! | GCATTATTGATGACGATATT+TGG | - | chr2_1:54399895-54399914 | Msa0212340:intron | 30.0% |
| !! | TATTGATGACGATATTTGGA+TGG | - | chr2_1:54399899-54399918 | Msa0212340:intron | 30.0% |
| !! | GTGATGTGTTTTGTTCTATA+GGG | + | chr2_1:54400102-54400121 | None:intergenic | 30.0% |
| !! | AGTGATGTGTTTTGTTCTAT+AGG | + | chr2_1:54400103-54400122 | None:intergenic | 30.0% |
| TGCGTTAAAAGTCTAATTGA+TGG | + | chr2_1:54400382-54400401 | None:intergenic | 30.0% | |
| ! | TCAATTAGACTTTTAACGCA+TGG | - | chr2_1:54400382-54400401 | Msa0212340:intron | 30.0% |
| CTAGGAAGTAGTACAATTAA+AGG | + | chr2_1:54400491-54400510 | None:intergenic | 30.0% | |
| ! | ATTGATTGCTATTACTCCTA+GGG | - | chr2_1:54400511-54400530 | Msa0212340:intron | 30.0% |
| GTGATCTCATTATACATACA+TGG | - | chr2_1:54400578-54400597 | Msa0212340:intron | 30.0% | |
| !! | AATGTGATAATGTTGACTCT+TGG | + | chr2_1:54400740-54400759 | None:intergenic | 30.0% |
| ! | GCTAATTGCTATTGTTGATT+TGG | - | chr2_1:54401097-54401116 | Msa0212340:intron | 30.0% |
| TGTATCTTGTGAGTTTAGTT+AGG | - | chr2_1:54401143-54401162 | Msa0212340:intron | 30.0% | |
| CATAGACAAAATAACAGCTT+AGG | + | chr2_1:54401301-54401320 | None:intergenic | 30.0% | |
| CAACACAAATAAAGAGAACA+AGG | + | chr2_1:54401337-54401356 | None:intergenic | 30.0% | |
| ! | CTTGTTCTCTTTATTTGTGT+TGG | - | chr2_1:54401335-54401354 | Msa0212340:intron | 30.0% |
| ! | TTGGTTGATATATGACATGA+GGG | - | chr2_1:54401354-54401373 | Msa0212340:intron | 30.0% |
| ATCAATCAAAAACATGTCTG+GGG | + | chr2_1:54401421-54401440 | None:intergenic | 30.0% | |
| GTATCAATCAAAAACATGTC+TGG | + | chr2_1:54401423-54401442 | None:intergenic | 30.0% | |
| ! | GATACTTGGACTAAATTTTG+AGG | - | chr2_1:54401438-54401457 | Msa0212340:intron | 30.0% |
| !! | CTAAATTTTGAGGGAGAAAA+TGG | - | chr2_1:54401448-54401467 | Msa0212340:intron | 30.0% |
| GCATTCTGTTATGTTTATTG+AGG | - | chr2_1:54401481-54401500 | Msa0212340:intron | 30.0% | |
| TTGGATAGCTTGATAAAAGA+GGG | - | chr2_1:54401514-54401533 | Msa0212340:intron | 30.0% | |
| CTAAGTCATTTACATTGTTG+TGG | - | chr2_1:54401596-54401615 | Msa0212340:intron | 30.0% | |
| ACAACAAGAAAAACTCTGTA+AGG | - | chr2_1:54402017-54402036 | Msa0212340:CDS | 30.0% | |
| !!! | TCTTCTTCTTTTGAAGTCAA+TGG | - | chr2_1:54402057-54402076 | Msa0212340:CDS | 30.0% |
| ! | TAAAATGCAATAGGTTCTGA+TGG | - | chr2_1:54402268-54402287 | Msa0212340:CDS | 30.0% |
| ! | AAAATGCAATAGGTTCTGAT+GGG | - | chr2_1:54402269-54402288 | Msa0212340:CDS | 30.0% |
| TCTTAATTGTAGTACTAGTG+TGG | - | chr2_1:54402447-54402466 | Msa0212340:CDS | 30.0% | |
| !! | ATACTACCAGCTATTTTGAA+AGG | - | chr2_1:54402536-54402555 | Msa0212340:CDS | 30.0% |
| CATTGTCAAACTGGAATTAG+CGG | + | chr2_1:54397820-54397839 | None:intergenic | 35.0% | |
| CAGTTTGACAATGGTTGATT+CGG | - | chr2_1:54397827-54397846 | Msa0212340:three_prime_UTR | 35.0% | |
| TATCGATACGACTTTCGATT+TGG | + | chr2_1:54397872-54397891 | None:intergenic | 35.0% | |
| ATACCTTGTTCATTGTTGGT+TGG | + | chr2_1:54397909-54397928 | None:intergenic | 35.0% | |
| ACGAATACCTTGTTCATTGT+TGG | + | chr2_1:54397913-54397932 | None:intergenic | 35.0% | |
| AAAATCAACCATTGTCGAAC+TGG | + | chr2_1:54398039-54398058 | None:intergenic | 35.0% | |
| !! | ATAATTTGTTCCCTGTTGGT+TGG | + | chr2_1:54398128-54398147 | None:intergenic | 35.0% |
| CGAATCAACCATTGTCAAAA+TGG | + | chr2_1:54398219-54398238 | None:intergenic | 35.0% | |
| TATCGATACGACTTTCGATT+TGG | + | chr2_1:54397872-54397891 | None:intergenic | 35.0% | |
| ! | TCGTATCGATAAACTAAAGG+AGG | - | chr2_1:54398271-54398290 | Msa0212340:intron | 35.0% |
| !! | ATAACTTCTTTGTTGGTGGT+TGG | + | chr2_1:54398299-54398318 | None:intergenic | 35.0% |
| ACGAATAACTTCTTTGTTGG+TGG | + | chr2_1:54398303-54398322 | None:intergenic | 35.0% | |
| CTCACGAATAACTTCTTTGT+TGG | + | chr2_1:54398306-54398325 | None:intergenic | 35.0% | |
| ! | AAGTTATTCGTGAGTTGAAG+AGG | - | chr2_1:54398312-54398331 | Msa0212340:intron | 35.0% |
| ATTGAGAAAACTTGTGTCGT+TGG | - | chr2_1:54398428-54398447 | Msa0212340:CDS | 35.0% | |
| CAGGTTTCGAAACAAATTGA+TGG | + | chr2_1:54398577-54398596 | None:intergenic | 35.0% | |
| ACCTGATGATTACAGAAATC+TGG | - | chr2_1:54398592-54398611 | Msa0212340:intron | 35.0% | |
| TCCAGATTTCTGTAATCATC+AGG | + | chr2_1:54398596-54398615 | None:intergenic | 35.0% | |
| ACACTCAAATCATTAACACC+AGG | + | chr2_1:54398677-54398696 | None:intergenic | 35.0% | |
| TAGTATATCCAATCCAGCAA+AGG | + | chr2_1:54398773-54398792 | None:intergenic | 35.0% | |
| TTGAGGACTTACTTCAAAGT+TGG | + | chr2_1:54398863-54398882 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTTGGTGTT+TGG | - | chr2_1:54398876-54398895 | Msa0212340:intron | 35.0% |
| ACCAAACACCAAACAAATTG+AGG | + | chr2_1:54398880-54398899 | None:intergenic | 35.0% | |
| CATAACAGTACCAATAACCA+AGG | + | chr2_1:54398942-54398961 | None:intergenic | 35.0% | |
| CTTGGTTATTGGTACTGTTA+TGG | - | chr2_1:54398940-54398959 | Msa0212340:intron | 35.0% | |
| AAATTGCAACTGTGTGAATC+GGG | + | chr2_1:54398984-54399003 | None:intergenic | 35.0% | |
| TTCACACAGTTGCAATTTAC+AGG | - | chr2_1:54398986-54399005 | Msa0212340:intron | 35.0% | |
| TCACACAGTTGCAATTTACA+GGG | - | chr2_1:54398987-54399006 | Msa0212340:intron | 35.0% | |
| GGGAAAAAATAGATCGACAA+TGG | - | chr2_1:54399007-54399026 | Msa0212340:intron | 35.0% | |
| ! | TGTGTGTTTGTCTTTTCCAT+TGG | - | chr2_1:54399138-54399157 | Msa0212340:intron | 35.0% |
| !! | TAGTGTGGAATTTGCTAAGT+AGG | - | chr2_1:54399224-54399243 | Msa0212340:intron | 35.0% |
| !! | GCCAGTTTGTTTCTATGAAA+TGG | - | chr2_1:54399615-54399634 | Msa0212340:intron | 35.0% |
| ATTTGTGTATAGTAGCGCTT+AGG | - | chr2_1:54399663-54399682 | Msa0212340:intron | 35.0% | |
| AATGATGCACATACTAACCA+GGG | + | chr2_1:54399734-54399753 | None:intergenic | 35.0% | |
| AGTTCAAATAATCAAGGCCA+AGG | + | chr2_1:54399806-54399825 | None:intergenic | 35.0% | |
| AGGCTTTCCTTCACATAATT+TGG | + | chr2_1:54399830-54399849 | None:intergenic | 35.0% | |
| TCCAAATAACAACACAACAC+AGG | + | chr2_1:54399850-54399869 | None:intergenic | 35.0% | |
| ! | TTTTGTTCTATAGGGATGTG+AGG | + | chr2_1:54400094-54400113 | None:intergenic | 35.0% |
| CAGTCAGGAAATAGAATCAT+TGG | + | chr2_1:54400231-54400250 | None:intergenic | 35.0% | |
| CAATGATTCTATTTCCTGAC+TGG | - | chr2_1:54400229-54400248 | Msa0212340:intron | 35.0% | |
| ATAGAGACAATTGTTGTGGA+AGG | + | chr2_1:54400290-54400309 | None:intergenic | 35.0% | |
| GGATATAGAGACAATTGTTG+TGG | + | chr2_1:54400294-54400313 | None:intergenic | 35.0% | |
| TGCTTACAATAGGACTTATG+TGG | + | chr2_1:54400315-54400334 | None:intergenic | 35.0% | |
| TTGAGTTATGGCATATAGAG+AGG | + | chr2_1:54400420-54400439 | None:intergenic | 35.0% | |
| !! | TCTTCTCAAGCATTGAGTTA+TGG | + | chr2_1:54400432-54400451 | None:intergenic | 35.0% |
| GGAGTAATAGCAATCAATCT+AGG | + | chr2_1:54400509-54400528 | None:intergenic | 35.0% | |
| ! | GATTGATTGCTATTACTCCT+AGG | - | chr2_1:54400510-54400529 | Msa0212340:intron | 35.0% |
| AGTATCATCTACTTGACTCA+CGG | - | chr2_1:54400652-54400671 | Msa0212340:intron | 35.0% | |
| TTAAGAAACCTTTCTGCTTG+TGG | - | chr2_1:54400696-54400715 | Msa0212340:intron | 35.0% | |
| ATACATGTCATTACCTGTGT+AGG | - | chr2_1:54400798-54400817 | Msa0212340:intron | 35.0% | |
| ! | GATTTGACTTTCGTGAGAAA+AGG | + | chr2_1:54400923-54400942 | None:intergenic | 35.0% |
| GTCAAATCTGTAGTTGAGTA+AGG | - | chr2_1:54400935-54400954 | Msa0212340:intron | 35.0% | |
| ! | TTCTGTTTTCCATGTTGAAG+AGG | - | chr2_1:54401252-54401271 | Msa0212340:intron | 35.0% |
| ! | TCTGTTTTCCATGTTGAAGA+GGG | - | chr2_1:54401253-54401272 | Msa0212340:intron | 35.0% |
| ! | GTTGGTTGATATATGACATG+AGG | - | chr2_1:54401353-54401372 | Msa0212340:intron | 35.0% |
| TTGATATATGACATGAGGGA+TGG | - | chr2_1:54401358-54401377 | Msa0212340:intron | 35.0% | |
| TGATATATGACATGAGGGAT+GGG | - | chr2_1:54401359-54401378 | Msa0212340:intron | 35.0% | |
| ATGTTTATTGAGGCGTAAAG+TGG | - | chr2_1:54401491-54401510 | Msa0212340:intron | 35.0% | |
| GTTGGATAGCTTGATAAAAG+AGG | - | chr2_1:54401513-54401532 | Msa0212340:intron | 35.0% | |
| ATAGCTTGATAAAAGAGGGT+TGG | - | chr2_1:54401518-54401537 | Msa0212340:intron | 35.0% | |
| ! | AGTTTAGAATATGCACTGTC+TGG | - | chr2_1:54401648-54401667 | Msa0212340:intron | 35.0% |
| CATGTAATGCACTAATGTGT+TGG | - | chr2_1:54401674-54401693 | Msa0212340:intron | 35.0% | |
| ! | TAATGCACTAATGTGTTGGT+AGG | - | chr2_1:54401678-54401697 | Msa0212340:intron | 35.0% |
| !!! | TTGCATGTTTTTTCAGACAC+CGG | - | chr2_1:54401918-54401937 | Msa0212340:CDS | 35.0% |
| ! | AGTTTTTCCCTTTCCATTTC+CGG | + | chr2_1:54401940-54401959 | None:intergenic | 35.0% |
| TATACATATGTTAGCCCACA+TGG | - | chr2_1:54402125-54402144 | Msa0212340:CDS | 35.0% | |
| AGTGAACAAACTCCTTCATT+TGG | + | chr2_1:54402379-54402398 | None:intergenic | 35.0% | |
| !!! | GCTGTTTTGAGTTCAAAGTT+GGG | + | chr2_1:54402418-54402437 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTGAGTTCAAAGT+TGG | + | chr2_1:54402419-54402438 | None:intergenic | 35.0% |
| ! | ATAGCTGGTAGTATTGAGAA+AGG | + | chr2_1:54402530-54402549 | None:intergenic | 35.0% |
| !! | GCATTTTAATAGTCGAGATC+CGG | - | chr2_1:54402564-54402583 | Msa0212340:CDS | 35.0% |
| !! | CATTTTAATAGTCGAGATCC+GGG | - | chr2_1:54402565-54402584 | Msa0212340:CDS | 35.0% |
| CGCTAATTCCAGTTTGACAA+TGG | - | chr2_1:54397818-54397837 | Msa0212340:three_prime_UTR | 40.0% | |
| CGAATCAACCATTGTCAAAC+TGG | + | chr2_1:54397829-54397848 | None:intergenic | 40.0% | |
| !! | ACGACTTTCGATTTGGAGTA+TGG | + | chr2_1:54397865-54397884 | None:intergenic | 40.0% |
| GATCCAACCAACAATGAACA+AGG | - | chr2_1:54397903-54397922 | Msa0212340:three_prime_UTR | 40.0% | |
| CATTGTCGAACTGGAATTAG+CGG | + | chr2_1:54398030-54398049 | None:intergenic | 40.0% | |
| CGATCGTATCTATCAACTAC+AGG | - | chr2_1:54398097-54398116 | Msa0212340:exon | 40.0% | |
| ! | TGTCAAAATGGGATTAGCGT+CGG | + | chr2_1:54398207-54398226 | None:intergenic | 40.0% |
| !! | CGCTAATCCCATTTTGACAA+TGG | - | chr2_1:54398208-54398227 | Msa0212340:intron | 40.0% |
| !! | ACGACTTTCGATTTGGAGTA+TGG | + | chr2_1:54397865-54397884 | None:intergenic | 40.0% |
| ACTATGTTCTGGTGAAGCAA+AGG | + | chr2_1:54398474-54398493 | None:intergenic | 40.0% | |
| TCTGTATCAATGCTAAGTCG+TGG | - | chr2_1:54398639-54398658 | Msa0212340:intron | 40.0% | |
| !!! | TTTTGTTGCTTTGCCTTTGC+TGG | - | chr2_1:54398757-54398776 | Msa0212340:intron | 40.0% |
| AGGACTTACTTCAAAGTTGG+CGG | + | chr2_1:54398860-54398879 | None:intergenic | 40.0% | |
| TTATTGGTACTGTTATGGGC+TGG | - | chr2_1:54398945-54398964 | Msa0212340:intron | 40.0% | |
| !! | GGAATTTGCTAAGTAGGAAC+CGG | - | chr2_1:54399230-54399249 | Msa0212340:intron | 40.0% |
| ATGAACAATAAGGACTGCAG+AGG | + | chr2_1:54399365-54399384 | None:intergenic | 40.0% | |
| CACAACAGCTAAGATGCATT+GGG | + | chr2_1:54399536-54399555 | None:intergenic | 40.0% | |
| TATCGTATTTATGGAACCCC+TGG | - | chr2_1:54399714-54399733 | Msa0212340:intron | 40.0% | |
| ATGATGCACATACTAACCAG+GGG | + | chr2_1:54399733-54399752 | None:intergenic | 40.0% | |
| GAATGATGCACATACTAACC+AGG | + | chr2_1:54399735-54399754 | None:intergenic | 40.0% | |
| ! | GCCTGTGTTGTGTTGTTATT+TGG | - | chr2_1:54399846-54399865 | Msa0212340:intron | 40.0% |
| ATCGGATAAAATGGAGGAAG+GGG | + | chr2_1:54400023-54400042 | None:intergenic | 40.0% | |
| CATCGGATAAAATGGAGGAA+GGG | + | chr2_1:54400024-54400043 | None:intergenic | 40.0% | |
| TTCTGTCCAAACCCATTATG+TGG | + | chr2_1:54400152-54400171 | None:intergenic | 40.0% | |
| TGGTCAAAATAGGGCCATAA+AGG | + | chr2_1:54400211-54400230 | None:intergenic | 40.0% | |
| ! | GTCCTCAAAGAGGTTTTCTA+CGG | + | chr2_1:54400264-54400283 | None:intergenic | 40.0% |
| ! | ACACTGGCTATGCTTACAAT+AGG | + | chr2_1:54400325-54400344 | None:intergenic | 40.0% |
| ! | CATAGCCAGTGTTATTACCA+AGG | - | chr2_1:54400333-54400352 | Msa0212340:intron | 40.0% |
| ! | CCTTTCCTTGGTAATAACAC+TGG | + | chr2_1:54400341-54400360 | None:intergenic | 40.0% |
| ! | CCAGTGTTATTACCAAGGAA+AGG | - | chr2_1:54400338-54400357 | Msa0212340:intron | 40.0% |
| TAAGTTTGTGTGCCTTTCCT+TGG | + | chr2_1:54400353-54400372 | None:intergenic | 40.0% | |
| ATGGCATATAGAGAGGAGTA+GGG | + | chr2_1:54400413-54400432 | None:intergenic | 40.0% | |
| TATGGCATATAGAGAGGAGT+AGG | + | chr2_1:54400414-54400433 | None:intergenic | 40.0% | |
| CCTAAGAAGTTGTATACCCT+AGG | + | chr2_1:54400530-54400549 | None:intergenic | 40.0% | |
| CCTAGGGTATACAACTTCTT+AGG | - | chr2_1:54400527-54400546 | Msa0212340:intron | 40.0% | |
| CTGTACCATAGTGTATCCAA+GGG | - | chr2_1:54400770-54400789 | Msa0212340:intron | 40.0% | |
| ATGACATGTATCAACTCCCT+TGG | + | chr2_1:54400789-54400808 | None:intergenic | 40.0% | |
| ! | ACGTGTCTGTTTCTCAAATC+TGG | + | chr2_1:54400843-54400862 | None:intergenic | 40.0% |
| AACAGACACGTTAGAGCTAA+TGG | - | chr2_1:54400852-54400871 | Msa0212340:intron | 40.0% | |
| ACAGACACGTTAGAGCTAAT+GGG | - | chr2_1:54400853-54400872 | Msa0212340:intron | 40.0% | |
| AATTCGCTCGTTAATGTGTC+TGG | + | chr2_1:54400879-54400898 | None:intergenic | 40.0% | |
| TGACTTTCGTGAGAAAAGGA+GGG | + | chr2_1:54400919-54400938 | None:intergenic | 40.0% | |
| TTGACTTTCGTGAGAAAAGG+AGG | + | chr2_1:54400920-54400939 | None:intergenic | 40.0% | |
| TTTCCCTTGTTGGAGAAAGA+GGG | + | chr2_1:54400998-54401017 | None:intergenic | 40.0% | |
| ATTTCCCTTGTTGGAGAAAG+AGG | + | chr2_1:54400999-54401018 | None:intergenic | 40.0% | |
| AGTTAGGACTTCAAAACGAC+AGG | - | chr2_1:54401159-54401178 | Msa0212340:intron | 40.0% | |
| GTTAGGACTTCAAAACGACA+GGG | - | chr2_1:54401160-54401179 | Msa0212340:intron | 40.0% | |
| ! | CTGTTTTCCATGTTGAAGAG+GGG | - | chr2_1:54401254-54401273 | Msa0212340:intron | 40.0% |
| TTATTGAGGCGTAAAGTGGT+TGG | - | chr2_1:54401495-54401514 | Msa0212340:intron | 40.0% | |
| TTACTTGACATGAGAGCAGA+AGG | - | chr2_1:54401561-54401580 | Msa0212340:intron | 40.0% | |
| !! | GGTGTCATTAAACATGCTAG+CGG | - | chr2_1:54401699-54401718 | Msa0212340:intron | 40.0% |
| ! | GTGTCATTAAACATGCTAGC+GGG | - | chr2_1:54401700-54401719 | Msa0212340:intron | 40.0% |
| GGAATGTTGTCTCGTTGTAT+TGG | - | chr2_1:54401740-54401759 | Msa0212340:CDS | 40.0% | |
| !!! | GTTTTTTCAGACACCGGAAA+TGG | - | chr2_1:54401924-54401943 | Msa0212340:CDS | 40.0% |
| GAAAAACTCTCTGCCAACAA+TGG | - | chr2_1:54401952-54401971 | Msa0212340:CDS | 40.0% | |
| ATTAGATTGCTGGCCATTGT+TGG | + | chr2_1:54401968-54401987 | None:intergenic | 40.0% | |
| TGTCTCGACTATTAGATTGC+TGG | + | chr2_1:54401978-54401997 | None:intergenic | 40.0% | |
| !! | GCTTGTTAGCTAGTCTTACA+AGG | - | chr2_1:54402156-54402175 | Msa0212340:CDS | 40.0% |
| TCTTCATCATCATGCTCCAA+CGG | + | chr2_1:54402299-54402318 | None:intergenic | 40.0% | |
| GATGAAGATGCTAGAGCAAA+AGG | - | chr2_1:54402311-54402330 | Msa0212340:CDS | 40.0% | |
| GAGATGTTAGAGCCAAATGA+AGG | - | chr2_1:54402364-54402383 | Msa0212340:CDS | 40.0% | |
| CTACTGCCTTTCAAAATAGC+TGG | + | chr2_1:54402545-54402564 | None:intergenic | 40.0% | |
| AAAAGCCAGATATCCTAACC+CGG | + | chr2_1:54402586-54402605 | None:intergenic | 40.0% | |
| ! | GTTAGGTTTTGCGTGTTGTG+TGG | + | chr2_1:54397770-54397789 | None:intergenic | 45.0% |
| ! | TGGAGGAGGGTTTGTTTGTT+AGG | + | chr2_1:54397787-54397806 | None:intergenic | 45.0% |
| TGTCAAACTGGAATTAGCGG+CGG | + | chr2_1:54397817-54397836 | None:intergenic | 45.0% | |
| ! | AGGGTTTGTAAGGTTTTGCG+TGG | + | chr2_1:54397991-54398010 | None:intergenic | 45.0% |
| CGCTAATTCCAGTTCGACAA+TGG | - | chr2_1:54398028-54398047 | Msa0212340:three_prime_UTR | 45.0% | |
| TACAGGCATATCCAACCAAC+AGG | - | chr2_1:54398114-54398133 | Msa0212340:CDS | 45.0% | |
| ACAGGCATATCCAACCAACA+GGG | - | chr2_1:54398115-54398134 | Msa0212340:CDS | 45.0% | |
| ! | GATTTTCGACGAAGAAGCCT+TGG | - | chr2_1:54398397-54398416 | Msa0212340:intron | 45.0% |
| TTGCTTTGCCTTTGCTGGAT+TGG | - | chr2_1:54398762-54398781 | Msa0212340:intron | 45.0% | |
| ACTTACTTCAAAGTTGGCGG+CGG | + | chr2_1:54398857-54398876 | None:intergenic | 45.0% | |
| CGACAGTGATGTTAAGCCAA+TGG | + | chr2_1:54399157-54399176 | None:intergenic | 45.0% | |
| GGCTTAACATCACTGTCGTT+TGG | - | chr2_1:54399159-54399178 | Msa0212340:intron | 45.0% | |
| GCACAACAGCTAAGATGCAT+TGG | + | chr2_1:54399537-54399556 | None:intergenic | 45.0% | |
| TGCATCTTAGCTGTTGTGCA+AGG | - | chr2_1:54399538-54399557 | Msa0212340:intron | 45.0% | |
| GCATCGGATAAAATGGAGGA+AGG | + | chr2_1:54400025-54400044 | None:intergenic | 45.0% | |
| !! | TCTGTGGGCATCGGATAAAA+TGG | + | chr2_1:54400032-54400051 | None:intergenic | 45.0% |
| CTATAGGAGCTTTGCTCTGT+GGG | + | chr2_1:54400047-54400066 | None:intergenic | 45.0% | |
| ACTATAGGAGCTTTGCTCTG+TGG | + | chr2_1:54400048-54400067 | None:intergenic | 45.0% | |
| ACAGAGCAAAGCTCCTATAG+TGG | - | chr2_1:54400047-54400066 | Msa0212340:intron | 45.0% | |
| TAGGGATGTGAGGAAAGAGT+GGG | + | chr2_1:54400084-54400103 | None:intergenic | 45.0% | |
| ATAGGGATGTGAGGAAAGAG+TGG | + | chr2_1:54400085-54400104 | None:intergenic | 45.0% | |
| TCCAAACCCATTATGTGGCA+GGG | + | chr2_1:54400147-54400166 | None:intergenic | 45.0% | |
| AGGGCCATAAAGGAGAATCT+GGG | + | chr2_1:54400201-54400220 | None:intergenic | 45.0% | |
| TAGGGCCATAAAGGAGAATC+TGG | + | chr2_1:54400202-54400221 | None:intergenic | 45.0% | |
| CTCCGTAGAAAACCTCTTTG+AGG | - | chr2_1:54400259-54400278 | Msa0212340:intron | 45.0% | |
| CATGTTGTCCACAAGCAGAA+AGG | + | chr2_1:54400707-54400726 | None:intergenic | 45.0% | |
| CTTTCTGCTTGTGGACAACA+TGG | - | chr2_1:54400705-54400724 | Msa0212340:intron | 45.0% | |
| GCTGTACCATAGTGTATCCA+AGG | - | chr2_1:54400769-54400788 | Msa0212340:intron | 45.0% | |
| CAACTCCCTTGGATACACTA+TGG | + | chr2_1:54400778-54400797 | None:intergenic | 45.0% | |
| CATGTCATTACCTGTGTAGG+TGG | - | chr2_1:54400801-54400820 | Msa0212340:intron | 45.0% | |
| AAGACTAATGCCACCTACAC+AGG | + | chr2_1:54400814-54400833 | None:intergenic | 45.0% | |
| TCTGTAGTTGAGTAAGGTGC+TGG | - | chr2_1:54400941-54400960 | Msa0212340:intron | 45.0% | |
| TTCCCTTGTTGGAGAAAGAG+GGG | + | chr2_1:54400997-54401016 | None:intergenic | 45.0% | |
| CGTCGAAACATTTCCCTTGT+TGG | + | chr2_1:54401008-54401027 | None:intergenic | 45.0% | |
| GAAATGTTTCGACGTTCTCG+CGG | - | chr2_1:54401014-54401033 | Msa0212340:intron | 45.0% | |
| AAATGTTTCGACGTTCTCGC+GGG | - | chr2_1:54401015-54401034 | Msa0212340:intron | 45.0% | |
| !!! | CTGGGGACGATTTTGATTCA+AGG | + | chr2_1:54401404-54401423 | None:intergenic | 45.0% |
| CGGGTTCATGTTCTAGCATT+TGG | - | chr2_1:54401719-54401738 | Msa0212340:intron | 45.0% | |
| !! | GTACAAAAGTGTCCTAGCCA+CGG | + | chr2_1:54401780-54401799 | None:intergenic | 45.0% |
| TTCAGACACCGGAAATGGAA+AGG | - | chr2_1:54401929-54401948 | Msa0212340:CDS | 45.0% | |
| TCAGACACCGGAAATGGAAA+GGG | - | chr2_1:54401930-54401949 | Msa0212340:CDS | 45.0% | |
| ACAAGCACATGCATCCATGT+GGG | + | chr2_1:54402142-54402161 | None:intergenic | 45.0% | |
| AACAAGCACATGCATCCATG+TGG | + | chr2_1:54402143-54402162 | None:intergenic | 45.0% | |
| TAATAGTCGAGATCCGGGTT+AGG | - | chr2_1:54402570-54402589 | Msa0212340:CDS | 45.0% | |
| !!! | AGGATATCTGGCTTTTACGC+CGG | - | chr2_1:54402590-54402609 | Msa0212340:CDS | 45.0% |
| TGTCGAACTGGAATTAGCGG+CGG | + | chr2_1:54398027-54398046 | None:intergenic | 50.0% | |
| AAACCCTCATCCACCACAAC+CGG | - | chr2_1:54398181-54398200 | Msa0212340:intron | 50.0% | |
| !! | AAAATGGGATTAGCGTCGGC+CGG | + | chr2_1:54398203-54398222 | None:intergenic | 50.0% |
| ! | CGTGAGTTGAAGAGGCTTAG+TGG | - | chr2_1:54398320-54398339 | Msa0212340:intron | 50.0% |
| !! | AGAAGCATCGGATCACCATC+AGG | + | chr2_1:54398527-54398546 | None:intergenic | 50.0% |
| !! | GTTATGGGCTGGTGTGTGTT+AGG | - | chr2_1:54398956-54398975 | Msa0212340:intron | 50.0% |
| CATTGGGTGCGTGTTTGTCT+TGG | - | chr2_1:54399083-54399102 | Msa0212340:intron | 50.0% | |
| TTGCTAAGTAGGAACCGGCT+AGG | - | chr2_1:54399235-54399254 | Msa0212340:intron | 50.0% | |
| TGCTAAGTAGGAACCGGCTA+GGG | - | chr2_1:54399236-54399255 | Msa0212340:intron | 50.0% | |
| TGCAGAGGCAGTTCTTTGTC+TGG | + | chr2_1:54399350-54399369 | None:intergenic | 50.0% | |
| !! | GTGGGCATCGGATAAAATGG+AGG | + | chr2_1:54400029-54400048 | None:intergenic | 50.0% |
| GATGTGAGGAAAGAGTGGGA+GGG | + | chr2_1:54400080-54400099 | None:intergenic | 50.0% | |
| CATTATGTGGCAGGGAGTGA+GGG | + | chr2_1:54400139-54400158 | None:intergenic | 50.0% | |
| CTCACTCCCTGCCACATAAT+GGG | - | chr2_1:54400138-54400157 | Msa0212340:intron | 50.0% | |
| !! | TCCCTGCCACATAATGGGTT+TGG | - | chr2_1:54400143-54400162 | Msa0212340:intron | 50.0% |
| GTCCAAACCCATTATGTGGC+AGG | + | chr2_1:54400148-54400167 | None:intergenic | 50.0% | |
| TGGGCCCAGATTCTCCTTTA+TGG | - | chr2_1:54400194-54400213 | Msa0212340:intron | 50.0% | |
| TACGGAGACGATATCCAGTC+AGG | + | chr2_1:54400246-54400265 | None:intergenic | 50.0% | |
| ! | TGGAAGGTACGTCCTCAAAG+AGG | + | chr2_1:54400274-54400293 | None:intergenic | 50.0% |
| AGGAGGGCAAGGAGCAAATT+TGG | + | chr2_1:54400903-54400922 | None:intergenic | 50.0% | |
| TTCGTGAGAAAAGGAGGGCA+AGG | + | chr2_1:54400914-54400933 | None:intergenic | 50.0% | |
| TGGAGCATGGGTATTTGGCA+CGG | + | chr2_1:54400972-54400991 | None:intergenic | 50.0% | |
| TTGTTGGAGAAAGAGGGGAG+TGG | + | chr2_1:54400992-54401011 | None:intergenic | 50.0% | |
| ACTCCCCTCTTTCTCCAACA+AGG | - | chr2_1:54400991-54401010 | Msa0212340:intron | 50.0% | |
| CTCCCCTCTTTCTCCAACAA+GGG | - | chr2_1:54400992-54401011 | Msa0212340:intron | 50.0% | |
| CTGCAATCCCCTCTTCAACA+TGG | + | chr2_1:54401264-54401283 | None:intergenic | 50.0% | |
| TGGAAGAAATCTTGCGTCCG+TGG | - | chr2_1:54401760-54401779 | Msa0212340:CDS | 50.0% | |
| ! | AGGTGATGATGCTGTGATGC+TGG | - | chr2_1:54402331-54402350 | Msa0212340:CDS | 50.0% |
| ! | GAGATCCGGGTTAGGATATC+TGG | - | chr2_1:54402578-54402597 | Msa0212340:CDS | 50.0% |
| GAGAATCAAACCCGGATCTC+CGG | + | chr2_1:54402612-54402631 | None:intergenic | 50.0% | |
| GGAGATCCGGGTTTGATTCT+CGG | - | chr2_1:54402611-54402630 | Msa0212340:CDS | 50.0% | |
| CCATTGCCGAGAATCAAACC+CGG | + | chr2_1:54402620-54402639 | None:intergenic | 50.0% | |
| AAACTGGAATTAGCGGCGGC+TGG | + | chr2_1:54397813-54397832 | None:intergenic | 55.0% | |
| TCGTGGCTTGAACGCAATCC+TGG | - | chr2_1:54398656-54398675 | Msa0212340:intron | 55.0% | |
| GCTAAGTAGGAACCGGCTAG+GGG | - | chr2_1:54399237-54399256 | Msa0212340:intron | 55.0% | |
| CTAAGTAGGAACCGGCTAGG+GGG | - | chr2_1:54399238-54399257 | Msa0212340:intron | 55.0% | |
| GAGCTTTGCTCTGTGGGCAT+CGG | + | chr2_1:54400041-54400060 | None:intergenic | 55.0% | |
| !! | GGAGGGTGTCTTGCCACTAT+AGG | + | chr2_1:54400063-54400082 | None:intergenic | 55.0% |
| GGATGTGAGGAAAGAGTGGG+AGG | + | chr2_1:54400081-54400100 | None:intergenic | 55.0% | |
| CCATTATGTGGCAGGGAGTG+AGG | + | chr2_1:54400140-54400159 | None:intergenic | 55.0% | |
| CCTCACTCCCTGCCACATAA+TGG | - | chr2_1:54400137-54400156 | Msa0212340:intron | 55.0% | |
| GCATGGGTATTTGGCACGGT+GGG | + | chr2_1:54400968-54400987 | None:intergenic | 55.0% | |
| AGCATGGGTATTTGGCACGG+TGG | + | chr2_1:54400969-54400988 | None:intergenic | 55.0% | |
| GGGAGTGGAGCATGGGTATT+TGG | + | chr2_1:54400977-54400996 | None:intergenic | 55.0% | |
| GAAAGAGGGGAGTGGAGCAT+GGG | + | chr2_1:54400984-54401003 | None:intergenic | 55.0% | |
| AGAAAGAGGGGAGTGGAGCA+TGG | + | chr2_1:54400985-54401004 | None:intergenic | 55.0% | |
| GAAATCTTGCGTCCGTGGCT+AGG | - | chr2_1:54401765-54401784 | Msa0212340:CDS | 55.0% | |
| !! | GGTTCTGATGGGTTTGCCGT+TGG | - | chr2_1:54402280-54402299 | Msa0212340:CDS | 55.0% |
| ! | TGGCTTTTACGCCGGAGATC+CGG | - | chr2_1:54402598-54402617 | Msa0212340:CDS | 55.0% |
| CCGGGTTTGATTCTCGGCAA+TGG | - | chr2_1:54402617-54402636 | Msa0212340:exon | 55.0% | |
| GCGGTGGAGGAGGGTTTGTA+AGG | + | chr2_1:54398001-54398020 | None:intergenic | 60.0% | |
| TACAAACCCTCCTCCACCGC+CGG | - | chr2_1:54398001-54398020 | Msa0212340:three_prime_UTR | 60.0% | |
| GAACTGGAATTAGCGGCGGC+CGG | + | chr2_1:54398023-54398042 | None:intergenic | 60.0% | |
| ! | GCAGGGAGTGAGGGAGCATA+TGG | + | chr2_1:54400130-54400149 | None:intergenic | 60.0% |
| ! | GGCTTTTACGCCGGAGATCC+GGG | - | chr2_1:54402599-54402618 | Msa0212340:CDS | 60.0% |
| CTGGAATTAGCGGCGGCTGG+CGG | + | chr2_1:54397810-54397829 | None:intergenic | 65.0% | |
| !! | CGGCCGGTTGTGGTGGATGA+GGG | + | chr2_1:54398187-54398206 | None:intergenic | 65.0% |
| !! | TCGGCCGGTTGTGGTGGATG+AGG | + | chr2_1:54398188-54398207 | None:intergenic | 65.0% |
| !! | TTAGCGTCGGCCGGTTGTGG+TGG | + | chr2_1:54398194-54398213 | None:intergenic | 65.0% |
| !! | GGATTAGCGTCGGCCGGTTG+TGG | + | chr2_1:54398197-54398216 | None:intergenic | 65.0% |
| TAGGAACCGGCTAGGGGGAG+AGG | - | chr2_1:54399243-54399262 | Msa0212340:intron | 65.0% | |
| AGGAACCGGCTAGGGGGAGA+GGG | - | chr2_1:54399244-54399263 | Msa0212340:intron | 65.0% | |
| GTCTTCCCTCTCCCCCTAGC+CGG | + | chr2_1:54399252-54399271 | None:intergenic | 65.0% | |
| GAATTAGCGGCGGCTGGCGG+TGG | + | chr2_1:54397807-54397826 | None:intergenic | 70.0% | |
| CTGGAATTAGCGGCGGCCGG+CGG | + | chr2_1:54398020-54398039 | None:intergenic | 70.0% | |
| TTAGCGGCGGCTGGCGGTGG+AGG | + | chr2_1:54397804-54397823 | None:intergenic | 75.0% | |
| GAATTAGCGGCGGCCGGCGG+TGG | + | chr2_1:54398017-54398036 | None:intergenic | 75.0% | |
| ! | CGGCGGCTGGCGGTGGAGGA+GGG | + | chr2_1:54397800-54397819 | None:intergenic | 80.0% |
| ! | TTAGCGGCGGCCGGCGGTGG+AGG | + | chr2_1:54398014-54398033 | None:intergenic | 80.0% |
| ! | GCGGCGGCTGGCGGTGGAGG+AGG | + | chr2_1:54397801-54397820 | None:intergenic | 85.0% |
| ! | CGGCGGCCGGCGGTGGAGGA+GGG | + | chr2_1:54398010-54398029 | None:intergenic | 85.0% |
| ! | GCGGCGGCCGGCGGTGGAGG+AGG | + | chr2_1:54398011-54398030 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 54397726 | 54402742 | 54397726 | ID=Msa0212340;Name=Msa0212340 |
| chr2_1 | mRNA | 54397726 | 54402742 | 54397726 | ID=Msa0212340-mRNA-1;Parent=Msa0212340;Name=Msa0212340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=111|0.66|0.75|1|1|0.75|4|384|374 |
| chr2_1 | exon | 54397726 | 54398187 | 54397726 | ID=Msa0212340-mRNA-1:exon:15083;Parent=Msa0212340-mRNA-1 |
| chr2_1 | exon | 54398424 | 54398534 | 54398424 | ID=Msa0212340-mRNA-1:exon:15082;Parent=Msa0212340-mRNA-1 |
| chr2_1 | exon | 54401598 | 54401636 | 54401598 | ID=Msa0212340-mRNA-1:exon:15081;Parent=Msa0212340-mRNA-1 |
| chr2_1 | exon | 54401735 | 54402742 | 54401735 | ID=Msa0212340-mRNA-1:exon:15080;Parent=Msa0212340-mRNA-1 |
| chr2_1 | five_prime_UTR | 54402632 | 54402742 | 54402632 | ID=Msa0212340-mRNA-1:five_prime_utr;Parent=Msa0212340-mRNA-1 |
| chr2_1 | CDS | 54401735 | 54402631 | 54401735 | ID=Msa0212340-mRNA-1:cds;Parent=Msa0212340-mRNA-1 |
| chr2_1 | CDS | 54401598 | 54401636 | 54401598 | ID=Msa0212340-mRNA-1:cds;Parent=Msa0212340-mRNA-1 |
| chr2_1 | CDS | 54398424 | 54398534 | 54398424 | ID=Msa0212340-mRNA-1:cds;Parent=Msa0212340-mRNA-1 |
| chr2_1 | CDS | 54398110 | 54398187 | 54398110 | ID=Msa0212340-mRNA-1:cds;Parent=Msa0212340-mRNA-1 |
| chr2_1 | three_prime_UTR | 54397726 | 54398109 | 54397726 | ID=Msa0212340-mRNA-1:three_prime_utr;Parent=Msa0212340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
