Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212400 | XP_024629325.1 | 76.056 | 355 | 73 | 5 | 1 | 347 | 1 | 351 | 2.19e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212400 | A0A396GPQ1 | 76.056 | 355 | 73 | 5 | 1 | 347 | 1 | 351 | 1.04e-159 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212340 | Msa0212400 | 0.979206 | 1.834875e-147 | -8.615850e-47 |
| Msa0212400 | Msa0291070 | 0.964288 | 3.871322e-123 | -8.615850e-47 |
| Msa0212400 | Msa0298110 | 0.805987 | 1.023484e-49 | -8.615850e-47 |
| Msa0212400 | Msa0329630 | 0.952845 | 1.004437e-110 | -8.615850e-47 |
| Msa0212400 | Msa1203030 | 0.814243 | 1.701385e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212400 | MtrunA17_Chr8g0373411 | 76.056 | 355 | 73 | 5 | 1 | 347 | 1 | 351 | 2.01e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATCAACCATTGTCAAAA+TGG | 0.188055 | 2_1:-54511458 | None:intergenic |
| TGGAGGAGGGTTTGTTTGTT+AGG | 0.253291 | 2_1:-54511026 | None:intergenic |
| ACGACTTTCGATTTGGAGTA+TGG | 0.269103 | 2_1:-54511104 | None:intergenic |
| ACGACTTTCGATTTGGAGTA+TGG | 0.269103 | 2_1:-54511494 | None:intergenic |
| AAGTCGTATCGATAAATTAA+TGG | 0.313006 | 2_1:+54511120 | Msa0212400:CDS |
| TTAGCGGCGGCTGGCGGTGG+AGG | 0.345735 | 2_1:-54511043 | None:intergenic |
| TTAGCGGCGGCCGGCGGTGG+AGG | 0.347728 | 2_1:-54511253 | None:intergenic |
| GGAGATCCGGGTTTGATTCT+CGG | 0.354677 | 2_1:+54515853 | Msa0212400:three_prime_UTR |
| GCGGCGGCCGGCGGTGGAGG+AGG | 0.356060 | 2_1:-54511250 | None:intergenic |
| GCGGCGGCTGGCGGTGGAGG+AGG | 0.358056 | 2_1:-54511040 | None:intergenic |
| CTCACGAATAACTTCTTTGT+TGG | 0.358997 | 2_1:-54511545 | None:intergenic |
| TATCGATACGACTTTCGATT+TGG | 0.359518 | 2_1:-54511111 | None:intergenic |
| CAGTTTGACAATGGTTGATT+CGG | 0.363585 | 2_1:+54511069 | Msa0212400:exon |
| GAGATCCGGGTTAGGATATC+TGG | 0.363671 | 2_1:+54515820 | Msa0212400:three_prime_UTR |
| GAATTAGCGGCGGCTGGCGG+TGG | 0.370125 | 2_1:-54511046 | None:intergenic |
| ACCTGATGATTACAGAAATC+TGG | 0.371292 | 2_1:+54511834 | Msa0212400:CDS |
| GAATTAGCGGCGGCCGGCGG+TGG | 0.372608 | 2_1:-54511256 | None:intergenic |
| TATCGATACGACTTTCGATT+TGG | 0.375478 | 2_1:-54511501 | None:intergenic |
| CGAATCAACCATTGTCAAAC+TGG | 0.391661 | 2_1:-54511068 | None:intergenic |
| AAAATCAACCATTGTCGAAC+TGG | 0.403034 | 2_1:-54511278 | None:intergenic |
| ACGAATACCTTGTTCATTGT+TGG | 0.403307 | 2_1:-54511152 | None:intergenic |
| CAGGTTTCGAAACAAATTGA+TGG | 0.406467 | 2_1:-54511816 | None:intergenic |
| GCGGTGGAGGAGGGTTTGTA+AGG | 0.409449 | 2_1:-54511240 | None:intergenic |
| TCCAGATTTCTGTAATCATC+AGG | 0.413475 | 2_1:-54511835 | None:intergenic |
| TACAGGCATATCCAACCAAC+AGG | 0.414999 | 2_1:+54511356 | Msa0212400:CDS |
| AGTGAACAAACTCCTTCATT+TGG | 0.419970 | 2_1:-54515618 | None:intergenic |
| CGTGAGTTGAAGAGGCTTAG+TGG | 0.427587 | 2_1:+54511562 | Msa0212400:CDS |
| TGTCTCGACTATTAGATTGC+TGG | 0.436263 | 2_1:-54515217 | None:intergenic |
| AAACCCTCATCCACCACAAC+CGG | 0.443154 | 2_1:+54511423 | Msa0212400:CDS |
| GGATTAGCGTCGGCCGGTTG+TGG | 0.443586 | 2_1:-54511436 | None:intergenic |
| CGGCGGCTGGCGGTGGAGGA+GGG | 0.444108 | 2_1:-54511039 | None:intergenic |
| CGGCGGCCGGCGGTGGAGGA+GGG | 0.453878 | 2_1:-54511249 | None:intergenic |
| GGATTAAACAAACTATGTTC+TGG | 0.457730 | 2_1:-54511724 | None:intergenic |
| ACGAATAACTTCTTTGTTGG+TGG | 0.458657 | 2_1:-54511542 | None:intergenic |
| TAAAATGCAATAGGTTCTGA+TGG | 0.462667 | 2_1:+54515510 | Msa0212400:intron |
| TCGGCCGGTTGTGGTGGATG+AGG | 0.465572 | 2_1:-54511427 | None:intergenic |
| ATAACTTCTTTGTTGGTGGT+TGG | 0.466863 | 2_1:-54511538 | None:intergenic |
| TAATAGTCGAGATCCGGGTT+AGG | 0.472037 | 2_1:+54515812 | Msa0212400:three_prime_UTR |
| TTGAGGACTTACTTCAAAGT+TGG | 0.473329 | 2_1:-54512102 | None:intergenic |
| ATTAGATTGCTGGCCATTGT+TGG | 0.475028 | 2_1:-54515207 | None:intergenic |
| GGAACAAATTATTAGTGAGT+TGG | 0.481276 | 2_1:+54511378 | Msa0212400:CDS |
| CGCTAATTCCAGTTCGACAA+TGG | 0.485959 | 2_1:+54511270 | Msa0212400:CDS |
| GAATCAACCATTGTCAAAAT+GGG | 0.486080 | 2_1:-54511457 | None:intergenic |
| TCGTGGCTTGAACGCAATCC+TGG | 0.486195 | 2_1:+54511898 | Msa0212400:CDS |
| AGGTGATGATGCTGTGATGC+TGG | 0.487466 | 2_1:+54515573 | Msa0212400:CDS |
| ACTAATAATTTGTTCCCTGT+TGG | 0.487749 | 2_1:-54511371 | None:intergenic |
| CGATCGTATCTATCAACTAC+AGG | 0.488463 | 2_1:+54511339 | Msa0212400:CDS |
| GAGAATCAAACCCGGATCTC+CGG | 0.494063 | 2_1:-54515851 | None:intergenic |
| AGGACTTACTTCAAAGTTGG+CGG | 0.494921 | 2_1:-54512099 | None:intergenic |
| TCAGACACCGGAAATGGAAA+GGG | 0.498482 | 2_1:+54515172 | Msa0212400:intron |
| CGGCCGGTTGTGGTGGATGA+GGG | 0.499241 | 2_1:-54511426 | None:intergenic |
| AGAAGCATCGGATCACCATC+AGG | 0.500172 | 2_1:-54511766 | None:intergenic |
| CTACTGCCTTTCAAAATAGC+TGG | 0.500559 | 2_1:-54515784 | None:intergenic |
| GGTTCTGATGGGTTTGCCGT+TGG | 0.507165 | 2_1:+54515522 | Msa0212400:intron |
| TTCAGACACCGGAAATGGAA+AGG | 0.511032 | 2_1:+54515171 | Msa0212400:intron |
| ATAATTTGTTCCCTGTTGGT+TGG | 0.514061 | 2_1:-54511367 | None:intergenic |
| CGCTAATTCCAGTTTGACAA+TGG | 0.515282 | 2_1:+54511060 | Msa0212400:exon |
| GATGAAGATGCTAGAGCAAA+AGG | 0.518055 | 2_1:+54515553 | Msa0212400:CDS |
| AAGTTATTCGTGAGTTGAAG+AGG | 0.523412 | 2_1:+54511554 | Msa0212400:CDS |
| AAACTGGAATTAGCGGCGGC+TGG | 0.530827 | 2_1:-54511052 | None:intergenic |
| ATACCTTGTTCATTGTTGGT+TGG | 0.548488 | 2_1:-54511148 | None:intergenic |
| TTAGCGTCGGCCGGTTGTGG+TGG | 0.548554 | 2_1:-54511433 | None:intergenic |
| CCGGGTTTGATTCTCGGCAA+TGG | 0.553127 | 2_1:+54515859 | Msa0212400:three_prime_UTR |
| TACAAACCCTCCTCCACCGC+CGG | 0.553250 | 2_1:+54511243 | Msa0212400:CDS |
| CATTGTCAAACTGGAATTAG+CGG | 0.554257 | 2_1:-54511059 | None:intergenic |
| AAAATGCAATAGGTTCTGAT+GGG | 0.560085 | 2_1:+54515511 | Msa0212400:intron |
| CATTGTCGAACTGGAATTAG+CGG | 0.561644 | 2_1:-54511269 | None:intergenic |
| ACTATGTTCTGGTGAAGCAA+AGG | 0.570024 | 2_1:-54511713 | None:intergenic |
| GAACTGGAATTAGCGGCGGC+CGG | 0.573910 | 2_1:-54511262 | None:intergenic |
| CTGGAATTAGCGGCGGCCGG+CGG | 0.578842 | 2_1:-54511259 | None:intergenic |
| ATTGAGAAAACTTGTGTCGT+TGG | 0.579887 | 2_1:+54511670 | Msa0212400:CDS |
| ATAGCTGGTAGTATTGAGAA+AGG | 0.584255 | 2_1:-54515769 | None:intergenic |
| AAGTCGTATCGATAAACTAA+AGG | 0.586014 | 2_1:+54511510 | Msa0212400:CDS |
| ACTTACTTCAAAGTTGGCGG+CGG | 0.600192 | 2_1:-54512096 | None:intergenic |
| GAGATGTTAGAGCCAAATGA+AGG | 0.610586 | 2_1:+54515606 | Msa0212400:three_prime_UTR |
| TCTTAATTGTAGTACTAGTG+TGG | 0.613934 | 2_1:+54515689 | Msa0212400:three_prime_UTR |
| TCTTCATCATCATGCTCCAA+CGG | 0.617314 | 2_1:-54515538 | None:intergenic |
| AAAATGGGATTAGCGTCGGC+CGG | 0.620552 | 2_1:-54511442 | None:intergenic |
| TCGTATCGATAAACTAAAGG+AGG | 0.621892 | 2_1:+54511513 | Msa0212400:CDS |
| CTGGAATTAGCGGCGGCTGG+CGG | 0.623774 | 2_1:-54511049 | None:intergenic |
| TCTGTATCAATGCTAAGTCG+TGG | 0.641490 | 2_1:+54511881 | Msa0212400:CDS |
| TGTCAAAATGGGATTAGCGT+CGG | 0.644494 | 2_1:-54511446 | None:intergenic |
| CCATTGCCGAGAATCAAACC+CGG | 0.652634 | 2_1:-54515859 | None:intergenic |
| AAAAGCCAGATATCCTAACC+CGG | 0.662428 | 2_1:-54515825 | None:intergenic |
| GATCCAACCAACAATGAACA+AGG | 0.663048 | 2_1:+54511145 | Msa0212400:CDS |
| ACACTCAAATCATTAACACC+AGG | 0.670543 | 2_1:-54511916 | None:intergenic |
| TGTCAAACTGGAATTAGCGG+CGG | 0.685168 | 2_1:-54511056 | None:intergenic |
| TGTCGAACTGGAATTAGCGG+CGG | 0.685336 | 2_1:-54511266 | None:intergenic |
| ACAGGCATATCCAACCAACA+GGG | 0.734249 | 2_1:+54511357 | Msa0212400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAGAATTTTAAATT+TGG | + | chr2_1:54512140-54512159 | Msa0212400:intron | 10.0% |
| !!! | TCATAATAATTTTATTGTTT+TGG | - | chr2_1:54512736-54512755 | None:intergenic | 10.0% |
| !! | TACTAGATAATATATAATAT+TGG | + | chr2_1:54512997-54513016 | Msa0212400:intron | 10.0% |
| !! | TAAAATTAGTTATATTACCT+TGG | + | chr2_1:54512164-54512183 | Msa0212400:intron | 15.0% |
| !! | AATTATGACTAAATTATCAT+TGG | + | chr2_1:54512308-54512327 | Msa0212400:intron | 15.0% |
| !! | ATTATGACTAAATTATCATT+GGG | + | chr2_1:54512309-54512328 | Msa0212400:intron | 15.0% |
| !!! | TTTGTTAATTTATTTTAGTG+TGG | + | chr2_1:54512451-54512470 | Msa0212400:intron | 15.0% |
| !! | AATAATATTGATGAACAATA+AGG | - | chr2_1:54512617-54512636 | None:intergenic | 15.0% |
| !! | AGATATTCAAATTTATTGTA+TGG | - | chr2_1:54514301-54514320 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTTTTCTTTTCT+GGG | - | chr2_1:54510992-54511011 | None:intergenic | 20.0% |
| !! | TCTTCTTACTAAAAATGATT+TGG | + | chr2_1:54511786-54511805 | Msa0212400:CDS | 20.0% |
| !!! | ATTAATTTGCATGTTTTTTC+AGG | + | chr2_1:54512052-54512071 | Msa0212400:intron | 20.0% |
| !! | GATAATTTAGTCATGATTTA+GGG | - | chr2_1:54512354-54512373 | None:intergenic | 20.0% |
| !! | TGATAATTTAGTCATGATTT+AGG | - | chr2_1:54512355-54512374 | None:intergenic | 20.0% |
| !! | AATCATGACTAAATTATCAT+TGG | + | chr2_1:54512356-54512375 | Msa0212400:intron | 20.0% |
| !! | ATCATGACTAAATTATCATT+GGG | + | chr2_1:54512357-54512376 | Msa0212400:intron | 20.0% |
| !! | CAATATTATTCAGTATATAG+TGG | + | chr2_1:54512627-54512646 | Msa0212400:intron | 20.0% |
| !! | AAAAATTCTACAACTAACAA+TGG | - | chr2_1:54512704-54512723 | None:intergenic | 20.0% |
| !! | ATGTTGTTATATCGTATTTA+TGG | + | chr2_1:54512947-54512966 | Msa0212400:intron | 20.0% |
| !! | TAAGTAGTTTACTGTTAAAT+TGG | + | chr2_1:54513225-54513244 | Msa0212400:intron | 20.0% |
| !! | AATTACCAAACATTATTCTT+TGG | - | chr2_1:54515487-54515506 | None:intergenic | 20.0% |
| !! | GTAATTGATTAAAATGCAAT+AGG | + | chr2_1:54515501-54515520 | Msa0212400:intron | 20.0% |
| !!! | GTGGTTTTTTTTTTCTTTTC+TGG | - | chr2_1:54510993-54511012 | None:intergenic | 25.0% |
| !! | AAGTCGTATCGATAAATTAA+TGG | + | chr2_1:54511120-54511139 | Msa0212400:CDS | 25.0% |
| !!! | TTTTTAGTAAGAAGAAGCAT+CGG | - | chr2_1:54511781-54511800 | None:intergenic | 25.0% |
| ! | AGTTATATTACCTTGGTTAT+TGG | + | chr2_1:54512171-54512190 | Msa0212400:intron | 25.0% |
| ! | AACAGAAATAAACAAATGAC+AGG | - | chr2_1:54512526-54512545 | None:intergenic | 25.0% |
| ! | AGGTAAAACTTTAACTATGT+TGG | - | chr2_1:54513028-54513047 | None:intergenic | 25.0% |
| !! | ACATAGTTAAAGTTTTACCT+TGG | + | chr2_1:54513028-54513047 | Msa0212400:intron | 25.0% |
| ! | TTTGGAAGTTCAAATAATCA+AGG | - | chr2_1:54513054-54513073 | None:intergenic | 25.0% |
| !!! | TGTGTTGTTATTTGGAATTT+TGG | + | chr2_1:54513096-54513115 | Msa0212400:intron | 25.0% |
| !!! | TTGTTATTTGGAATTTTGGA+TGG | + | chr2_1:54513100-54513119 | Msa0212400:intron | 25.0% |
| ! | TTTGCTGCTAATTTACTATT+TGG | + | chr2_1:54513416-54513435 | Msa0212400:intron | 25.0% |
| ! | TTGCTGCTAATTTACTATTT+GGG | + | chr2_1:54513417-54513436 | Msa0212400:intron | 25.0% |
| ! | TAGAATCATTGGTCAAAATA+GGG | - | chr2_1:54513462-54513481 | None:intergenic | 25.0% |
| ! | ATAGAATCATTGGTCAAAAT+AGG | - | chr2_1:54513463-54513482 | None:intergenic | 25.0% |
| !!! | TAGCTTCTCAATTTTTGTTT+TGG | - | chr2_1:54513875-54513894 | None:intergenic | 25.0% |
| ! | TTGGATTCTCTTTATTAATG+TGG | + | chr2_1:54514358-54514377 | Msa0212400:intron | 25.0% |
| ! | TGGATTCTCTTTATTAATGT+GGG | + | chr2_1:54514359-54514378 | Msa0212400:intron | 25.0% |
| ! | AATTGTCAACTAGAGTTTAT+AGG | + | chr2_1:54514446-54514465 | Msa0212400:intron | 25.0% |
| ! | ACATGGAAAACAGAAATAAA+AGG | - | chr2_1:54514489-54514508 | None:intergenic | 25.0% |
| ! | TATCAATCAAAAACATGTCT+GGG | - | chr2_1:54514664-54514683 | None:intergenic | 25.0% |
| !!! | ACATGTTTTTGATTGATACT+TGG | + | chr2_1:54514666-54514685 | Msa0212400:intron | 25.0% |
| !! | ATACTTGGACTAAATTTTGA+GGG | + | chr2_1:54514681-54514700 | Msa0212400:intron | 25.0% |
| ! | ACATAACAGAATGCAATTAA+AGG | - | chr2_1:54514717-54514736 | None:intergenic | 25.0% |
| ! | TAAGTCATTTACATTGTTGT+GGG | + | chr2_1:54514839-54514858 | Msa0212400:intron | 25.0% |
| ! | CAAAACCAAAGAATAATGTT+TGG | + | chr2_1:54515479-54515498 | Msa0212400:intron | 25.0% |
| !! | ACTAATAATTTGTTCCCTGT+TGG | - | chr2_1:54511374-54511393 | None:intergenic | 30.0% |
| GGAACAAATTATTAGTGAGT+TGG | + | chr2_1:54511378-54511397 | Msa0212400:CDS | 30.0% | |
| GAATCAACCATTGTCAAAAT+GGG | - | chr2_1:54511460-54511479 | None:intergenic | 30.0% | |
| !! | CATTTTGACAATGGTTGATT+CGG | + | chr2_1:54511459-54511478 | Msa0212400:CDS | 30.0% |
| ! | AAGTCGTATCGATAAACTAA+AGG | + | chr2_1:54511510-54511529 | Msa0212400:CDS | 30.0% |
| ! | TTTCTCAATCATCTTTTCCA+AGG | - | chr2_1:54511659-54511678 | None:intergenic | 30.0% |
| GGATTAAACAAACTATGTTC+TGG | - | chr2_1:54511727-54511746 | None:intergenic | 30.0% | |
| ! | GGAAAGATAAAAAGCATATC+TGG | - | chr2_1:54511748-54511767 | None:intergenic | 30.0% |
| !! | ATGCTTTTTATCTTTCCTGA+TGG | + | chr2_1:54511751-54511770 | Msa0212400:CDS | 30.0% |
| !!! | AATTTGCATGTTTTTTCAGG+AGG | + | chr2_1:54512055-54512074 | Msa0212400:intron | 30.0% |
| ! | AAGTAAGTCCTCAATTTGTT+TGG | + | chr2_1:54512111-54512130 | Msa0212400:intron | 30.0% |
| TTGGTTATTGGTACTGTTAT+GGG | + | chr2_1:54512183-54512202 | Msa0212400:intron | 30.0% | |
| TAAATTGCAACTGTGTGAAT+CGG | - | chr2_1:54512227-54512246 | None:intergenic | 30.0% | |
| AATTAAGAGGCAAGAGATTT+AGG | - | chr2_1:54512677-54512696 | None:intergenic | 30.0% | |
| TAACAATGGCATCAATTAAG+AGG | - | chr2_1:54512690-54512709 | None:intergenic | 30.0% | |
| TCCATTTCATAGAAACAAAC+TGG | - | chr2_1:54512861-54512880 | None:intergenic | 30.0% | |
| !! | AGTTTGTTTCTATGAAATGG+AGG | + | chr2_1:54512860-54512879 | Msa0212400:intron | 30.0% |
| TGAACTTCCAAATTATGTGA+AGG | + | chr2_1:54513062-54513081 | Msa0212400:intron | 30.0% | |
| !! | GCATTATTGATGACGATATT+TGG | + | chr2_1:54513137-54513156 | Msa0212400:intron | 30.0% |
| !! | TATTGATGACGATATTTGGA+TGG | + | chr2_1:54513141-54513160 | Msa0212400:intron | 30.0% |
| !! | GTGATGTGTTTTGTTCTATA+GGG | - | chr2_1:54513344-54513363 | None:intergenic | 30.0% |
| !! | AGTGATGTGTTTTGTTCTAT+AGG | - | chr2_1:54513345-54513364 | None:intergenic | 30.0% |
| TGCGTTAAAAGTCTAATTGA+TGG | - | chr2_1:54513624-54513643 | None:intergenic | 30.0% | |
| ! | TCAATTAGACTTTTAACGCA+TGG | + | chr2_1:54513624-54513643 | Msa0212400:intron | 30.0% |
| CTAGGAAGTAGTACAATTAA+AGG | - | chr2_1:54513733-54513752 | None:intergenic | 30.0% | |
| ! | ATTGATTGCTATTACTCCTA+GGG | + | chr2_1:54513753-54513772 | Msa0212400:intron | 30.0% |
| GTGATCTCATTATACATACA+TGG | + | chr2_1:54513820-54513839 | Msa0212400:intron | 30.0% | |
| !! | AATGTGATAATGTTGACTCT+TGG | - | chr2_1:54513982-54514001 | None:intergenic | 30.0% |
| ! | GCTAATTGCTATTGTTGATT+TGG | + | chr2_1:54514339-54514358 | Msa0212400:intron | 30.0% |
| TGTATCTTGTGAGTTTAGTT+AGG | + | chr2_1:54514385-54514404 | Msa0212400:intron | 30.0% | |
| CATAGACAAAATAACAGCTT+AGG | - | chr2_1:54514543-54514562 | None:intergenic | 30.0% | |
| CAACACAAATAAAGAGAACA+AGG | - | chr2_1:54514579-54514598 | None:intergenic | 30.0% | |
| ! | CTTGTTCTCTTTATTTGTGT+TGG | + | chr2_1:54514577-54514596 | Msa0212400:intron | 30.0% |
| ! | TTGGTTGATATATGACATGA+GGG | + | chr2_1:54514596-54514615 | Msa0212400:intron | 30.0% |
| ATCAATCAAAAACATGTCTG+GGG | - | chr2_1:54514663-54514682 | None:intergenic | 30.0% | |
| GTATCAATCAAAAACATGTC+TGG | - | chr2_1:54514665-54514684 | None:intergenic | 30.0% | |
| ! | GATACTTGGACTAAATTTTG+AGG | + | chr2_1:54514680-54514699 | Msa0212400:intron | 30.0% |
| !! | CTAAATTTTGAGGGAGAAAA+TGG | + | chr2_1:54514690-54514709 | Msa0212400:intron | 30.0% |
| GCATTCTGTTATGTTTATTG+AGG | + | chr2_1:54514723-54514742 | Msa0212400:intron | 30.0% | |
| TTGGATAGCTTGATAAAAGA+GGG | + | chr2_1:54514756-54514775 | Msa0212400:intron | 30.0% | |
| CTAAGTCATTTACATTGTTG+TGG | + | chr2_1:54514838-54514857 | Msa0212400:intron | 30.0% | |
| ACAACAAGAAAAACTCTGTA+AGG | + | chr2_1:54515259-54515278 | Msa0212400:CDS | 30.0% | |
| !!! | TCTTCTTCTTTTGAAGTCAA+TGG | + | chr2_1:54515299-54515318 | Msa0212400:intron | 30.0% |
| ! | TAAAATGCAATAGGTTCTGA+TGG | + | chr2_1:54515510-54515529 | Msa0212400:intron | 30.0% |
| ! | AAAATGCAATAGGTTCTGAT+GGG | + | chr2_1:54515511-54515530 | Msa0212400:intron | 30.0% |
| TCTTAATTGTAGTACTAGTG+TGG | + | chr2_1:54515689-54515708 | Msa0212400:three_prime_UTR | 30.0% | |
| !! | ATACTACCAGCTATTTTGAA+AGG | + | chr2_1:54515778-54515797 | Msa0212400:three_prime_UTR | 30.0% |
| CATTGTCAAACTGGAATTAG+CGG | - | chr2_1:54511062-54511081 | None:intergenic | 35.0% | |
| CAGTTTGACAATGGTTGATT+CGG | + | chr2_1:54511069-54511088 | Msa0212400:exon | 35.0% | |
| TATCGATACGACTTTCGATT+TGG | - | chr2_1:54511114-54511133 | None:intergenic | 35.0% | |
| ATACCTTGTTCATTGTTGGT+TGG | - | chr2_1:54511151-54511170 | None:intergenic | 35.0% | |
| ACGAATACCTTGTTCATTGT+TGG | - | chr2_1:54511155-54511174 | None:intergenic | 35.0% | |
| AAAATCAACCATTGTCGAAC+TGG | - | chr2_1:54511281-54511300 | None:intergenic | 35.0% | |
| !! | ATAATTTGTTCCCTGTTGGT+TGG | - | chr2_1:54511370-54511389 | None:intergenic | 35.0% |
| CGAATCAACCATTGTCAAAA+TGG | - | chr2_1:54511461-54511480 | None:intergenic | 35.0% | |
| TATCGATACGACTTTCGATT+TGG | - | chr2_1:54511114-54511133 | None:intergenic | 35.0% | |
| ! | TCGTATCGATAAACTAAAGG+AGG | + | chr2_1:54511513-54511532 | Msa0212400:CDS | 35.0% |
| !! | ATAACTTCTTTGTTGGTGGT+TGG | - | chr2_1:54511541-54511560 | None:intergenic | 35.0% |
| ACGAATAACTTCTTTGTTGG+TGG | - | chr2_1:54511545-54511564 | None:intergenic | 35.0% | |
| CTCACGAATAACTTCTTTGT+TGG | - | chr2_1:54511548-54511567 | None:intergenic | 35.0% | |
| ! | AAGTTATTCGTGAGTTGAAG+AGG | + | chr2_1:54511554-54511573 | Msa0212400:CDS | 35.0% |
| ATTGAGAAAACTTGTGTCGT+TGG | + | chr2_1:54511670-54511689 | Msa0212400:CDS | 35.0% | |
| CAGGTTTCGAAACAAATTGA+TGG | - | chr2_1:54511819-54511838 | None:intergenic | 35.0% | |
| ACCTGATGATTACAGAAATC+TGG | + | chr2_1:54511834-54511853 | Msa0212400:CDS | 35.0% | |
| TCCAGATTTCTGTAATCATC+AGG | - | chr2_1:54511838-54511857 | None:intergenic | 35.0% | |
| ACACTCAAATCATTAACACC+AGG | - | chr2_1:54511919-54511938 | None:intergenic | 35.0% | |
| TAGTATATCCAATCCAGCAA+AGG | - | chr2_1:54512015-54512034 | None:intergenic | 35.0% | |
| TTGAGGACTTACTTCAAAGT+TGG | - | chr2_1:54512105-54512124 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTTGGTGTT+TGG | + | chr2_1:54512118-54512137 | Msa0212400:intron | 35.0% |
| ACCAAACACCAAACAAATTG+AGG | - | chr2_1:54512122-54512141 | None:intergenic | 35.0% | |
| CATAACAGTACCAATAACCA+AGG | - | chr2_1:54512184-54512203 | None:intergenic | 35.0% | |
| CTTGGTTATTGGTACTGTTA+TGG | + | chr2_1:54512182-54512201 | Msa0212400:intron | 35.0% | |
| AAATTGCAACTGTGTGAATC+GGG | - | chr2_1:54512226-54512245 | None:intergenic | 35.0% | |
| TTCACACAGTTGCAATTTAC+AGG | + | chr2_1:54512228-54512247 | Msa0212400:intron | 35.0% | |
| TCACACAGTTGCAATTTACA+GGG | + | chr2_1:54512229-54512248 | Msa0212400:intron | 35.0% | |
| GGGAAAAAATAGATCGACAA+TGG | + | chr2_1:54512249-54512268 | Msa0212400:intron | 35.0% | |
| ! | TGTGTGTTTGTCTTTTCCAT+TGG | + | chr2_1:54512380-54512399 | Msa0212400:intron | 35.0% |
| !! | TAGTGTGGAATTTGCTAAGT+AGG | + | chr2_1:54512466-54512485 | Msa0212400:intron | 35.0% |
| !! | GCCAGTTTGTTTCTATGAAA+TGG | + | chr2_1:54512857-54512876 | Msa0212400:intron | 35.0% |
| ATTTGTGTATAGTAGCGCTT+AGG | + | chr2_1:54512905-54512924 | Msa0212400:intron | 35.0% | |
| AATGATGCACATACTAACCA+GGG | - | chr2_1:54512976-54512995 | None:intergenic | 35.0% | |
| AGTTCAAATAATCAAGGCCA+AGG | - | chr2_1:54513048-54513067 | None:intergenic | 35.0% | |
| AGGCTTTCCTTCACATAATT+TGG | - | chr2_1:54513072-54513091 | None:intergenic | 35.0% | |
| TCCAAATAACAACACAACAC+AGG | - | chr2_1:54513092-54513111 | None:intergenic | 35.0% | |
| ! | TTTTGTTCTATAGGGATGTG+AGG | - | chr2_1:54513336-54513355 | None:intergenic | 35.0% |
| CAGTCAGGAAATAGAATCAT+TGG | - | chr2_1:54513473-54513492 | None:intergenic | 35.0% | |
| CAATGATTCTATTTCCTGAC+TGG | + | chr2_1:54513471-54513490 | Msa0212400:intron | 35.0% | |
| ATAGAGACAATTGTTGTGGA+AGG | - | chr2_1:54513532-54513551 | None:intergenic | 35.0% | |
| GGATATAGAGACAATTGTTG+TGG | - | chr2_1:54513536-54513555 | None:intergenic | 35.0% | |
| TGCTTACAATAGGACTTATG+TGG | - | chr2_1:54513557-54513576 | None:intergenic | 35.0% | |
| TTGAGTTATGGCATATAGAG+AGG | - | chr2_1:54513662-54513681 | None:intergenic | 35.0% | |
| !! | TCTTCTCAAGCATTGAGTTA+TGG | - | chr2_1:54513674-54513693 | None:intergenic | 35.0% |
| GGAGTAATAGCAATCAATCT+AGG | - | chr2_1:54513751-54513770 | None:intergenic | 35.0% | |
| ! | GATTGATTGCTATTACTCCT+AGG | + | chr2_1:54513752-54513771 | Msa0212400:intron | 35.0% |
| AGTATCATCTACTTGACTCA+CGG | + | chr2_1:54513894-54513913 | Msa0212400:intron | 35.0% | |
| TTAAGAAACCTTTCTGCTTG+TGG | + | chr2_1:54513938-54513957 | Msa0212400:intron | 35.0% | |
| ATACATGTCATTACCTGTGT+AGG | + | chr2_1:54514040-54514059 | Msa0212400:intron | 35.0% | |
| ! | GATTTGACTTTCGTGAGAAA+AGG | - | chr2_1:54514165-54514184 | None:intergenic | 35.0% |
| GTCAAATCTGTAGTTGAGTA+AGG | + | chr2_1:54514177-54514196 | Msa0212400:intron | 35.0% | |
| ! | TTCTGTTTTCCATGTTGAAG+AGG | + | chr2_1:54514494-54514513 | Msa0212400:intron | 35.0% |
| ! | TCTGTTTTCCATGTTGAAGA+GGG | + | chr2_1:54514495-54514514 | Msa0212400:intron | 35.0% |
| ! | GTTGGTTGATATATGACATG+AGG | + | chr2_1:54514595-54514614 | Msa0212400:intron | 35.0% |
| TTGATATATGACATGAGGGA+TGG | + | chr2_1:54514600-54514619 | Msa0212400:intron | 35.0% | |
| TGATATATGACATGAGGGAT+GGG | + | chr2_1:54514601-54514620 | Msa0212400:intron | 35.0% | |
| ATGTTTATTGAGGCGTAAAG+TGG | + | chr2_1:54514733-54514752 | Msa0212400:intron | 35.0% | |
| GTTGGATAGCTTGATAAAAG+AGG | + | chr2_1:54514755-54514774 | Msa0212400:intron | 35.0% | |
| ATAGCTTGATAAAAGAGGGT+TGG | + | chr2_1:54514760-54514779 | Msa0212400:intron | 35.0% | |
| ! | AGTTTAGAATATGCACTGTC+TGG | + | chr2_1:54514890-54514909 | Msa0212400:intron | 35.0% |
| CATGTAATGCACTAATGTGT+TGG | + | chr2_1:54514916-54514935 | Msa0212400:intron | 35.0% | |
| ! | TAATGCACTAATGTGTTGGT+AGG | + | chr2_1:54514920-54514939 | Msa0212400:intron | 35.0% |
| !!! | TTGCATGTTTTTTCAGACAC+CGG | + | chr2_1:54515160-54515179 | Msa0212400:intron | 35.0% |
| ! | AGTTTTTCCCTTTCCATTTC+CGG | - | chr2_1:54515182-54515201 | None:intergenic | 35.0% |
| TATACATATGTTAGCCCACA+TGG | + | chr2_1:54515367-54515386 | Msa0212400:intron | 35.0% | |
| AGTGAACAAACTCCTTCATT+TGG | - | chr2_1:54515621-54515640 | None:intergenic | 35.0% | |
| !!! | GCTGTTTTGAGTTCAAAGTT+GGG | - | chr2_1:54515660-54515679 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTGAGTTCAAAGT+TGG | - | chr2_1:54515661-54515680 | None:intergenic | 35.0% |
| ! | ATAGCTGGTAGTATTGAGAA+AGG | - | chr2_1:54515772-54515791 | None:intergenic | 35.0% |
| !! | GCATTTTAATAGTCGAGATC+CGG | + | chr2_1:54515806-54515825 | Msa0212400:three_prime_UTR | 35.0% |
| !! | CATTTTAATAGTCGAGATCC+GGG | + | chr2_1:54515807-54515826 | Msa0212400:three_prime_UTR | 35.0% |
| CGCTAATTCCAGTTTGACAA+TGG | + | chr2_1:54511060-54511079 | Msa0212400:exon | 40.0% | |
| CGAATCAACCATTGTCAAAC+TGG | - | chr2_1:54511071-54511090 | None:intergenic | 40.0% | |
| !! | ACGACTTTCGATTTGGAGTA+TGG | - | chr2_1:54511107-54511126 | None:intergenic | 40.0% |
| GATCCAACCAACAATGAACA+AGG | + | chr2_1:54511145-54511164 | Msa0212400:CDS | 40.0% | |
| CATTGTCGAACTGGAATTAG+CGG | - | chr2_1:54511272-54511291 | None:intergenic | 40.0% | |
| CGATCGTATCTATCAACTAC+AGG | + | chr2_1:54511339-54511358 | Msa0212400:CDS | 40.0% | |
| ! | TGTCAAAATGGGATTAGCGT+CGG | - | chr2_1:54511449-54511468 | None:intergenic | 40.0% |
| !! | CGCTAATCCCATTTTGACAA+TGG | + | chr2_1:54511450-54511469 | Msa0212400:CDS | 40.0% |
| !! | ACGACTTTCGATTTGGAGTA+TGG | - | chr2_1:54511107-54511126 | None:intergenic | 40.0% |
| ACTATGTTCTGGTGAAGCAA+AGG | - | chr2_1:54511716-54511735 | None:intergenic | 40.0% | |
| TCTGTATCAATGCTAAGTCG+TGG | + | chr2_1:54511881-54511900 | Msa0212400:CDS | 40.0% | |
| !!! | TTTTGTTGCTTTGCCTTTGC+TGG | + | chr2_1:54511999-54512018 | Msa0212400:intron | 40.0% |
| AGGACTTACTTCAAAGTTGG+CGG | - | chr2_1:54512102-54512121 | None:intergenic | 40.0% | |
| TTATTGGTACTGTTATGGGC+TGG | + | chr2_1:54512187-54512206 | Msa0212400:intron | 40.0% | |
| !! | GGAATTTGCTAAGTAGGAAC+CGG | + | chr2_1:54512472-54512491 | Msa0212400:intron | 40.0% |
| ATGAACAATAAGGACTGCAG+AGG | - | chr2_1:54512607-54512626 | None:intergenic | 40.0% | |
| CACAACAGCTAAGATGCATT+GGG | - | chr2_1:54512778-54512797 | None:intergenic | 40.0% | |
| TATCGTATTTATGGAACCCC+TGG | + | chr2_1:54512956-54512975 | Msa0212400:intron | 40.0% | |
| ATGATGCACATACTAACCAG+GGG | - | chr2_1:54512975-54512994 | None:intergenic | 40.0% | |
| GAATGATGCACATACTAACC+AGG | - | chr2_1:54512977-54512996 | None:intergenic | 40.0% | |
| ! | GCCTGTGTTGTGTTGTTATT+TGG | + | chr2_1:54513088-54513107 | Msa0212400:intron | 40.0% |
| ATCGGATAAAATGGAGGAAG+GGG | - | chr2_1:54513265-54513284 | None:intergenic | 40.0% | |
| CATCGGATAAAATGGAGGAA+GGG | - | chr2_1:54513266-54513285 | None:intergenic | 40.0% | |
| TTCTGTCCAAACCCATTATG+TGG | - | chr2_1:54513394-54513413 | None:intergenic | 40.0% | |
| TGGTCAAAATAGGGCCATAA+AGG | - | chr2_1:54513453-54513472 | None:intergenic | 40.0% | |
| ! | GTCCTCAAAGAGGTTTTCTA+CGG | - | chr2_1:54513506-54513525 | None:intergenic | 40.0% |
| ! | ACACTGGCTATGCTTACAAT+AGG | - | chr2_1:54513567-54513586 | None:intergenic | 40.0% |
| ! | CATAGCCAGTGTTATTACCA+AGG | + | chr2_1:54513575-54513594 | Msa0212400:intron | 40.0% |
| ! | CCTTTCCTTGGTAATAACAC+TGG | - | chr2_1:54513583-54513602 | None:intergenic | 40.0% |
| ! | CCAGTGTTATTACCAAGGAA+AGG | + | chr2_1:54513580-54513599 | Msa0212400:intron | 40.0% |
| TAAGTTTGTGTGCCTTTCCT+TGG | - | chr2_1:54513595-54513614 | None:intergenic | 40.0% | |
| ATGGCATATAGAGAGGAGTA+GGG | - | chr2_1:54513655-54513674 | None:intergenic | 40.0% | |
| TATGGCATATAGAGAGGAGT+AGG | - | chr2_1:54513656-54513675 | None:intergenic | 40.0% | |
| CCTAAGAAGTTGTATACCCT+AGG | - | chr2_1:54513772-54513791 | None:intergenic | 40.0% | |
| CCTAGGGTATACAACTTCTT+AGG | + | chr2_1:54513769-54513788 | Msa0212400:intron | 40.0% | |
| CTGTACCATAGTGTATCCAA+GGG | + | chr2_1:54514012-54514031 | Msa0212400:intron | 40.0% | |
| ATGACATGTATCAACTCCCT+TGG | - | chr2_1:54514031-54514050 | None:intergenic | 40.0% | |
| ! | ACGTGTCTGTTTCTCAAATC+TGG | - | chr2_1:54514085-54514104 | None:intergenic | 40.0% |
| AACAGACACGTTAGAGCTAA+TGG | + | chr2_1:54514094-54514113 | Msa0212400:intron | 40.0% | |
| ACAGACACGTTAGAGCTAAT+GGG | + | chr2_1:54514095-54514114 | Msa0212400:intron | 40.0% | |
| AATTCGCTCGTTAATGTGTC+TGG | - | chr2_1:54514121-54514140 | None:intergenic | 40.0% | |
| TGACTTTCGTGAGAAAAGGA+GGG | - | chr2_1:54514161-54514180 | None:intergenic | 40.0% | |
| TTGACTTTCGTGAGAAAAGG+AGG | - | chr2_1:54514162-54514181 | None:intergenic | 40.0% | |
| TTTCCCTTGTTGGAGAAAGA+GGG | - | chr2_1:54514240-54514259 | None:intergenic | 40.0% | |
| ATTTCCCTTGTTGGAGAAAG+AGG | - | chr2_1:54514241-54514260 | None:intergenic | 40.0% | |
| AGTTAGGACTTCAAAACGAC+AGG | + | chr2_1:54514401-54514420 | Msa0212400:intron | 40.0% | |
| GTTAGGACTTCAAAACGACA+GGG | + | chr2_1:54514402-54514421 | Msa0212400:intron | 40.0% | |
| ! | CTGTTTTCCATGTTGAAGAG+GGG | + | chr2_1:54514496-54514515 | Msa0212400:intron | 40.0% |
| TTATTGAGGCGTAAAGTGGT+TGG | + | chr2_1:54514737-54514756 | Msa0212400:intron | 40.0% | |
| TTACTTGACATGAGAGCAGA+AGG | + | chr2_1:54514803-54514822 | Msa0212400:intron | 40.0% | |
| !! | GGTGTCATTAAACATGCTAG+CGG | + | chr2_1:54514941-54514960 | Msa0212400:intron | 40.0% |
| ! | GTGTCATTAAACATGCTAGC+GGG | + | chr2_1:54514942-54514961 | Msa0212400:intron | 40.0% |
| GGAATGTTGTCTCGTTGTAT+TGG | + | chr2_1:54514982-54515001 | Msa0212400:intron | 40.0% | |
| !!! | GTTTTTTCAGACACCGGAAA+TGG | + | chr2_1:54515166-54515185 | Msa0212400:intron | 40.0% |
| GAAAAACTCTCTGCCAACAA+TGG | + | chr2_1:54515194-54515213 | Msa0212400:CDS | 40.0% | |
| ATTAGATTGCTGGCCATTGT+TGG | - | chr2_1:54515210-54515229 | None:intergenic | 40.0% | |
| TGTCTCGACTATTAGATTGC+TGG | - | chr2_1:54515220-54515239 | None:intergenic | 40.0% | |
| !! | GCTTGTTAGCTAGTCTTACA+AGG | + | chr2_1:54515398-54515417 | Msa0212400:intron | 40.0% |
| TCTTCATCATCATGCTCCAA+CGG | - | chr2_1:54515541-54515560 | None:intergenic | 40.0% | |
| GATGAAGATGCTAGAGCAAA+AGG | + | chr2_1:54515553-54515572 | Msa0212400:CDS | 40.0% | |
| GAGATGTTAGAGCCAAATGA+AGG | + | chr2_1:54515606-54515625 | Msa0212400:three_prime_UTR | 40.0% | |
| CTACTGCCTTTCAAAATAGC+TGG | - | chr2_1:54515787-54515806 | None:intergenic | 40.0% | |
| AAAAGCCAGATATCCTAACC+CGG | - | chr2_1:54515828-54515847 | None:intergenic | 40.0% | |
| ! | GTTAGGTTTTGCGTGTTGTG+TGG | - | chr2_1:54511012-54511031 | None:intergenic | 45.0% |
| ! | TGGAGGAGGGTTTGTTTGTT+AGG | - | chr2_1:54511029-54511048 | None:intergenic | 45.0% |
| TGTCAAACTGGAATTAGCGG+CGG | - | chr2_1:54511059-54511078 | None:intergenic | 45.0% | |
| ! | AGGGTTTGTAAGGTTTTGCG+TGG | - | chr2_1:54511233-54511252 | None:intergenic | 45.0% |
| CGCTAATTCCAGTTCGACAA+TGG | + | chr2_1:54511270-54511289 | Msa0212400:CDS | 45.0% | |
| TACAGGCATATCCAACCAAC+AGG | + | chr2_1:54511356-54511375 | Msa0212400:CDS | 45.0% | |
| ACAGGCATATCCAACCAACA+GGG | + | chr2_1:54511357-54511376 | Msa0212400:CDS | 45.0% | |
| ! | GATTTTCGACGAAGAAGCCT+TGG | + | chr2_1:54511639-54511658 | Msa0212400:CDS | 45.0% |
| TTGCTTTGCCTTTGCTGGAT+TGG | + | chr2_1:54512004-54512023 | Msa0212400:intron | 45.0% | |
| ACTTACTTCAAAGTTGGCGG+CGG | - | chr2_1:54512099-54512118 | None:intergenic | 45.0% | |
| CGACAGTGATGTTAAGCCAA+TGG | - | chr2_1:54512399-54512418 | None:intergenic | 45.0% | |
| GGCTTAACATCACTGTCGTT+TGG | + | chr2_1:54512401-54512420 | Msa0212400:intron | 45.0% | |
| GCACAACAGCTAAGATGCAT+TGG | - | chr2_1:54512779-54512798 | None:intergenic | 45.0% | |
| TGCATCTTAGCTGTTGTGCA+AGG | + | chr2_1:54512780-54512799 | Msa0212400:intron | 45.0% | |
| GCATCGGATAAAATGGAGGA+AGG | - | chr2_1:54513267-54513286 | None:intergenic | 45.0% | |
| !! | TCTGTGGGCATCGGATAAAA+TGG | - | chr2_1:54513274-54513293 | None:intergenic | 45.0% |
| CTATAGGAGCTTTGCTCTGT+GGG | - | chr2_1:54513289-54513308 | None:intergenic | 45.0% | |
| ACTATAGGAGCTTTGCTCTG+TGG | - | chr2_1:54513290-54513309 | None:intergenic | 45.0% | |
| ACAGAGCAAAGCTCCTATAG+TGG | + | chr2_1:54513289-54513308 | Msa0212400:intron | 45.0% | |
| TAGGGATGTGAGGAAAGAGT+GGG | - | chr2_1:54513326-54513345 | None:intergenic | 45.0% | |
| ATAGGGATGTGAGGAAAGAG+TGG | - | chr2_1:54513327-54513346 | None:intergenic | 45.0% | |
| TCCAAACCCATTATGTGGCA+GGG | - | chr2_1:54513389-54513408 | None:intergenic | 45.0% | |
| AGGGCCATAAAGGAGAATCT+GGG | - | chr2_1:54513443-54513462 | None:intergenic | 45.0% | |
| TAGGGCCATAAAGGAGAATC+TGG | - | chr2_1:54513444-54513463 | None:intergenic | 45.0% | |
| CTCCGTAGAAAACCTCTTTG+AGG | + | chr2_1:54513501-54513520 | Msa0212400:intron | 45.0% | |
| CATGTTGTCCACAAGCAGAA+AGG | - | chr2_1:54513949-54513968 | None:intergenic | 45.0% | |
| CTTTCTGCTTGTGGACAACA+TGG | + | chr2_1:54513947-54513966 | Msa0212400:intron | 45.0% | |
| GCTGTACCATAGTGTATCCA+AGG | + | chr2_1:54514011-54514030 | Msa0212400:intron | 45.0% | |
| CAACTCCCTTGGATACACTA+TGG | - | chr2_1:54514020-54514039 | None:intergenic | 45.0% | |
| CATGTCATTACCTGTGTAGG+TGG | + | chr2_1:54514043-54514062 | Msa0212400:intron | 45.0% | |
| AAGACTAATGCCACCTACAC+AGG | - | chr2_1:54514056-54514075 | None:intergenic | 45.0% | |
| TCTGTAGTTGAGTAAGGTGC+TGG | + | chr2_1:54514183-54514202 | Msa0212400:intron | 45.0% | |
| TTCCCTTGTTGGAGAAAGAG+GGG | - | chr2_1:54514239-54514258 | None:intergenic | 45.0% | |
| CGTCGAAACATTTCCCTTGT+TGG | - | chr2_1:54514250-54514269 | None:intergenic | 45.0% | |
| GAAATGTTTCGACGTTCTCG+CGG | + | chr2_1:54514256-54514275 | Msa0212400:intron | 45.0% | |
| AAATGTTTCGACGTTCTCGC+GGG | + | chr2_1:54514257-54514276 | Msa0212400:intron | 45.0% | |
| !!! | CTGGGGACGATTTTGATTCA+AGG | - | chr2_1:54514646-54514665 | None:intergenic | 45.0% |
| CGGGTTCATGTTCTAGCATT+TGG | + | chr2_1:54514961-54514980 | Msa0212400:intron | 45.0% | |
| !! | GTACAAAAGTGTCCTAGCCA+CGG | - | chr2_1:54515022-54515041 | None:intergenic | 45.0% |
| TTCAGACACCGGAAATGGAA+AGG | + | chr2_1:54515171-54515190 | Msa0212400:intron | 45.0% | |
| TCAGACACCGGAAATGGAAA+GGG | + | chr2_1:54515172-54515191 | Msa0212400:intron | 45.0% | |
| ACAAGCACATGCATCCATGT+GGG | - | chr2_1:54515384-54515403 | None:intergenic | 45.0% | |
| AACAAGCACATGCATCCATG+TGG | - | chr2_1:54515385-54515404 | None:intergenic | 45.0% | |
| TAATAGTCGAGATCCGGGTT+AGG | + | chr2_1:54515812-54515831 | Msa0212400:three_prime_UTR | 45.0% | |
| !!! | AGGATATCTGGCTTTTACGC+CGG | + | chr2_1:54515832-54515851 | Msa0212400:three_prime_UTR | 45.0% |
| TGTCGAACTGGAATTAGCGG+CGG | - | chr2_1:54511269-54511288 | None:intergenic | 50.0% | |
| AAACCCTCATCCACCACAAC+CGG | + | chr2_1:54511423-54511442 | Msa0212400:CDS | 50.0% | |
| !! | AAAATGGGATTAGCGTCGGC+CGG | - | chr2_1:54511445-54511464 | None:intergenic | 50.0% |
| ! | CGTGAGTTGAAGAGGCTTAG+TGG | + | chr2_1:54511562-54511581 | Msa0212400:CDS | 50.0% |
| !! | AGAAGCATCGGATCACCATC+AGG | - | chr2_1:54511769-54511788 | None:intergenic | 50.0% |
| !! | GTTATGGGCTGGTGTGTGTT+AGG | + | chr2_1:54512198-54512217 | Msa0212400:intron | 50.0% |
| CATTGGGTGCGTGTTTGTCT+TGG | + | chr2_1:54512325-54512344 | Msa0212400:intron | 50.0% | |
| TTGCTAAGTAGGAACCGGCT+AGG | + | chr2_1:54512477-54512496 | Msa0212400:intron | 50.0% | |
| TGCTAAGTAGGAACCGGCTA+GGG | + | chr2_1:54512478-54512497 | Msa0212400:intron | 50.0% | |
| TGCAGAGGCAGTTCTTTGTC+TGG | - | chr2_1:54512592-54512611 | None:intergenic | 50.0% | |
| !! | GTGGGCATCGGATAAAATGG+AGG | - | chr2_1:54513271-54513290 | None:intergenic | 50.0% |
| GATGTGAGGAAAGAGTGGGA+GGG | - | chr2_1:54513322-54513341 | None:intergenic | 50.0% | |
| CATTATGTGGCAGGGAGTGA+GGG | - | chr2_1:54513381-54513400 | None:intergenic | 50.0% | |
| CTCACTCCCTGCCACATAAT+GGG | + | chr2_1:54513380-54513399 | Msa0212400:intron | 50.0% | |
| !! | TCCCTGCCACATAATGGGTT+TGG | + | chr2_1:54513385-54513404 | Msa0212400:intron | 50.0% |
| GTCCAAACCCATTATGTGGC+AGG | - | chr2_1:54513390-54513409 | None:intergenic | 50.0% | |
| TGGGCCCAGATTCTCCTTTA+TGG | + | chr2_1:54513436-54513455 | Msa0212400:intron | 50.0% | |
| TACGGAGACGATATCCAGTC+AGG | - | chr2_1:54513488-54513507 | None:intergenic | 50.0% | |
| ! | TGGAAGGTACGTCCTCAAAG+AGG | - | chr2_1:54513516-54513535 | None:intergenic | 50.0% |
| AGGAGGGCAAGGAGCAAATT+TGG | - | chr2_1:54514145-54514164 | None:intergenic | 50.0% | |
| TTCGTGAGAAAAGGAGGGCA+AGG | - | chr2_1:54514156-54514175 | None:intergenic | 50.0% | |
| TGGAGCATGGGTATTTGGCA+CGG | - | chr2_1:54514214-54514233 | None:intergenic | 50.0% | |
| TTGTTGGAGAAAGAGGGGAG+TGG | - | chr2_1:54514234-54514253 | None:intergenic | 50.0% | |
| ACTCCCCTCTTTCTCCAACA+AGG | + | chr2_1:54514233-54514252 | Msa0212400:intron | 50.0% | |
| CTCCCCTCTTTCTCCAACAA+GGG | + | chr2_1:54514234-54514253 | Msa0212400:intron | 50.0% | |
| CTGCAATCCCCTCTTCAACA+TGG | - | chr2_1:54514506-54514525 | None:intergenic | 50.0% | |
| TGGAAGAAATCTTGCGTCCG+TGG | + | chr2_1:54515002-54515021 | Msa0212400:intron | 50.0% | |
| ! | AGGTGATGATGCTGTGATGC+TGG | + | chr2_1:54515573-54515592 | Msa0212400:CDS | 50.0% |
| ! | GAGATCCGGGTTAGGATATC+TGG | + | chr2_1:54515820-54515839 | Msa0212400:three_prime_UTR | 50.0% |
| GAGAATCAAACCCGGATCTC+CGG | - | chr2_1:54515854-54515873 | None:intergenic | 50.0% | |
| GGAGATCCGGGTTTGATTCT+CGG | + | chr2_1:54515853-54515872 | Msa0212400:three_prime_UTR | 50.0% | |
| CCATTGCCGAGAATCAAACC+CGG | - | chr2_1:54515862-54515881 | None:intergenic | 50.0% | |
| AAACTGGAATTAGCGGCGGC+TGG | - | chr2_1:54511055-54511074 | None:intergenic | 55.0% | |
| TCGTGGCTTGAACGCAATCC+TGG | + | chr2_1:54511898-54511917 | Msa0212400:CDS | 55.0% | |
| GCTAAGTAGGAACCGGCTAG+GGG | + | chr2_1:54512479-54512498 | Msa0212400:intron | 55.0% | |
| CTAAGTAGGAACCGGCTAGG+GGG | + | chr2_1:54512480-54512499 | Msa0212400:intron | 55.0% | |
| GAGCTTTGCTCTGTGGGCAT+CGG | - | chr2_1:54513283-54513302 | None:intergenic | 55.0% | |
| !! | GGAGGGTGTCTTGCCACTAT+AGG | - | chr2_1:54513305-54513324 | None:intergenic | 55.0% |
| GGATGTGAGGAAAGAGTGGG+AGG | - | chr2_1:54513323-54513342 | None:intergenic | 55.0% | |
| CCATTATGTGGCAGGGAGTG+AGG | - | chr2_1:54513382-54513401 | None:intergenic | 55.0% | |
| CCTCACTCCCTGCCACATAA+TGG | + | chr2_1:54513379-54513398 | Msa0212400:intron | 55.0% | |
| GCATGGGTATTTGGCACGGT+GGG | - | chr2_1:54514210-54514229 | None:intergenic | 55.0% | |
| AGCATGGGTATTTGGCACGG+TGG | - | chr2_1:54514211-54514230 | None:intergenic | 55.0% | |
| GGGAGTGGAGCATGGGTATT+TGG | - | chr2_1:54514219-54514238 | None:intergenic | 55.0% | |
| GAAAGAGGGGAGTGGAGCAT+GGG | - | chr2_1:54514226-54514245 | None:intergenic | 55.0% | |
| AGAAAGAGGGGAGTGGAGCA+TGG | - | chr2_1:54514227-54514246 | None:intergenic | 55.0% | |
| GAAATCTTGCGTCCGTGGCT+AGG | + | chr2_1:54515007-54515026 | Msa0212400:intron | 55.0% | |
| !! | GGTTCTGATGGGTTTGCCGT+TGG | + | chr2_1:54515522-54515541 | Msa0212400:intron | 55.0% |
| ! | TGGCTTTTACGCCGGAGATC+CGG | + | chr2_1:54515840-54515859 | Msa0212400:three_prime_UTR | 55.0% |
| CCGGGTTTGATTCTCGGCAA+TGG | + | chr2_1:54515859-54515878 | Msa0212400:three_prime_UTR | 55.0% | |
| GCGGTGGAGGAGGGTTTGTA+AGG | - | chr2_1:54511243-54511262 | None:intergenic | 60.0% | |
| TACAAACCCTCCTCCACCGC+CGG | + | chr2_1:54511243-54511262 | Msa0212400:CDS | 60.0% | |
| GAACTGGAATTAGCGGCGGC+CGG | - | chr2_1:54511265-54511284 | None:intergenic | 60.0% | |
| ! | GCAGGGAGTGAGGGAGCATA+TGG | - | chr2_1:54513372-54513391 | None:intergenic | 60.0% |
| ! | GGCTTTTACGCCGGAGATCC+GGG | + | chr2_1:54515841-54515860 | Msa0212400:three_prime_UTR | 60.0% |
| CTGGAATTAGCGGCGGCTGG+CGG | - | chr2_1:54511052-54511071 | None:intergenic | 65.0% | |
| !! | CGGCCGGTTGTGGTGGATGA+GGG | - | chr2_1:54511429-54511448 | None:intergenic | 65.0% |
| !! | TCGGCCGGTTGTGGTGGATG+AGG | - | chr2_1:54511430-54511449 | None:intergenic | 65.0% |
| !! | TTAGCGTCGGCCGGTTGTGG+TGG | - | chr2_1:54511436-54511455 | None:intergenic | 65.0% |
| !! | GGATTAGCGTCGGCCGGTTG+TGG | - | chr2_1:54511439-54511458 | None:intergenic | 65.0% |
| TAGGAACCGGCTAGGGGGAG+AGG | + | chr2_1:54512485-54512504 | Msa0212400:intron | 65.0% | |
| AGGAACCGGCTAGGGGGAGA+GGG | + | chr2_1:54512486-54512505 | Msa0212400:intron | 65.0% | |
| GTCTTCCCTCTCCCCCTAGC+CGG | - | chr2_1:54512494-54512513 | None:intergenic | 65.0% | |
| GAATTAGCGGCGGCTGGCGG+TGG | - | chr2_1:54511049-54511068 | None:intergenic | 70.0% | |
| CTGGAATTAGCGGCGGCCGG+CGG | - | chr2_1:54511262-54511281 | None:intergenic | 70.0% | |
| TTAGCGGCGGCTGGCGGTGG+AGG | - | chr2_1:54511046-54511065 | None:intergenic | 75.0% | |
| GAATTAGCGGCGGCCGGCGG+TGG | - | chr2_1:54511259-54511278 | None:intergenic | 75.0% | |
| ! | CGGCGGCTGGCGGTGGAGGA+GGG | - | chr2_1:54511042-54511061 | None:intergenic | 80.0% |
| ! | TTAGCGGCGGCCGGCGGTGG+AGG | - | chr2_1:54511256-54511275 | None:intergenic | 80.0% |
| ! | GCGGCGGCTGGCGGTGGAGG+AGG | - | chr2_1:54511043-54511062 | None:intergenic | 85.0% |
| ! | CGGCGGCCGGCGGTGGAGGA+GGG | - | chr2_1:54511252-54511271 | None:intergenic | 85.0% |
| ! | GCGGCGGCCGGCGGTGGAGG+AGG | - | chr2_1:54511253-54511272 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 54510968 | 54515984 | 54510968 | ID=Msa0212400;Name=Msa0212400 |
| chr2_1 | mRNA | 54510968 | 54515984 | 54510968 | ID=Msa0212400-mRNA-1;Parent=Msa0212400;Name=Msa0212400-mRNA-1;_AED=0.04;_eAED=0.04;_QI=111|0.66|0.75|1|1|0.75|4|384|374 |
| chr2_1 | exon | 54510968 | 54511975 | 54510968 | ID=Msa0212400-mRNA-1:exon:15091;Parent=Msa0212400-mRNA-1 |
| chr2_1 | exon | 54512074 | 54512112 | 54512074 | ID=Msa0212400-mRNA-1:exon:15092;Parent=Msa0212400-mRNA-1 |
| chr2_1 | exon | 54515176 | 54515286 | 54515176 | ID=Msa0212400-mRNA-1:exon:15093;Parent=Msa0212400-mRNA-1 |
| chr2_1 | exon | 54515523 | 54515984 | 54515523 | ID=Msa0212400-mRNA-1:exon:15094;Parent=Msa0212400-mRNA-1 |
| chr2_1 | five_prime_UTR | 54510968 | 54511078 | 54510968 | ID=Msa0212400-mRNA-1:five_prime_utr;Parent=Msa0212400-mRNA-1 |
| chr2_1 | CDS | 54511079 | 54511975 | 54511079 | ID=Msa0212400-mRNA-1:cds;Parent=Msa0212400-mRNA-1 |
| chr2_1 | CDS | 54512074 | 54512112 | 54512074 | ID=Msa0212400-mRNA-1:cds;Parent=Msa0212400-mRNA-1 |
| chr2_1 | CDS | 54515176 | 54515286 | 54515176 | ID=Msa0212400-mRNA-1:cds;Parent=Msa0212400-mRNA-1 |
| chr2_1 | CDS | 54515523 | 54515600 | 54515523 | ID=Msa0212400-mRNA-1:cds;Parent=Msa0212400-mRNA-1 |
| chr2_1 | three_prime_UTR | 54515601 | 54515984 | 54515601 | ID=Msa0212400-mRNA-1:three_prime_utr;Parent=Msa0212400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
