Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291070 | XP_024629325.1 | 77.193 | 342 | 68 | 4 | 1 | 336 | 1 | 338 | 1.47e-157 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291070 | A0A396GPQ1 | 77.193 | 342 | 68 | 4 | 1 | 336 | 1 | 338 | 7.04e-158 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045090 | Msa0291070 | 0.805222 | 1.481767e-49 | -8.615850e-47 |
| Msa0045190 | Msa0291070 | 0.800294 | 1.541739e-48 | -8.615850e-47 |
| Msa0045350 | Msa0291070 | 0.825592 | 4.310498e-54 | -8.615850e-47 |
| Msa0045440 | Msa0291070 | 0.813814 | 2.115293e-51 | -8.615850e-47 |
| Msa0212340 | Msa0291070 | 0.962740 | 3.072291e-121 | -8.615850e-47 |
| Msa0212400 | Msa0291070 | 0.964288 | 3.871322e-123 | -8.615850e-47 |
| Msa0291070 | Msa0298110 | 0.845184 | 4.756112e-59 | -8.615850e-47 |
| Msa0291070 | Msa0329630 | 0.971796 | 9.912757e-134 | -8.615850e-47 |
| Msa0291070 | Msa0484480 | 0.809792 | 1.587865e-50 | -8.615850e-47 |
| Msa0291070 | Msa1028500 | 0.812367 | 4.394723e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291070 | MtrunA17_Chr8g0373411 | 77.193 | 342 | 68 | 4 | 1 | 336 | 1 | 338 | 1.35e-161 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATCAACCATTGTCAAAA+TGG | 0.188055 | 2_3:-39230604 | None:intergenic |
| TGGAGGAGGGTTTGTTTGTT+AGG | 0.253291 | 2_3:-39230172 | None:intergenic |
| ACGACTTTCGATTTGGAGTA+TGG | 0.269103 | 2_3:-39230250 | None:intergenic |
| ACGACTTTCGATTTGGAGTA+TGG | 0.269103 | 2_3:-39230640 | None:intergenic |
| AAGTCGTATCGATAAATTAA+TGG | 0.313006 | 2_3:+39230266 | Msa0291070:CDS |
| TTAGCGGCGGCTGGCGGTGG+AGG | 0.345735 | 2_3:-39230189 | None:intergenic |
| TTAGCGGCGGCCGGCGGTGG+AGG | 0.347728 | 2_3:-39230399 | None:intergenic |
| GGAGATCCGGGTTTGATTCT+CGG | 0.354677 | 2_3:+39234988 | Msa0291070:three_prime_UTR |
| GCGGCGGCCGGCGGTGGAGG+AGG | 0.356060 | 2_3:-39230396 | None:intergenic |
| GCGGCGGCTGGCGGTGGAGG+AGG | 0.358056 | 2_3:-39230186 | None:intergenic |
| CTCACGAATAACTTCTTTGT+TGG | 0.358997 | 2_3:-39230691 | None:intergenic |
| TATCGATACGACTTTCGATT+TGG | 0.359518 | 2_3:-39230257 | None:intergenic |
| CAGTTTGACAATGGTTGATT+CGG | 0.363585 | 2_3:+39230215 | Msa0291070:exon |
| GAGATCCGGGTTAGGATATC+TGG | 0.363671 | 2_3:+39234955 | Msa0291070:three_prime_UTR |
| GAATTAGCGGCGGCTGGCGG+TGG | 0.370125 | 2_3:-39230192 | None:intergenic |
| ACCTGATGATTACAGAAATC+TGG | 0.371292 | 2_3:+39230980 | Msa0291070:CDS |
| GAATTAGCGGCGGCCGGCGG+TGG | 0.372608 | 2_3:-39230402 | None:intergenic |
| TATCGATACGACTTTCGATT+TGG | 0.375478 | 2_3:-39230647 | None:intergenic |
| CGAATCAACCATTGTCAAAC+TGG | 0.391661 | 2_3:-39230214 | None:intergenic |
| AAAATCAACCATTGTCGAAC+TGG | 0.403034 | 2_3:-39230424 | None:intergenic |
| ACGAATACCTTGTTCATTGT+TGG | 0.403307 | 2_3:-39230298 | None:intergenic |
| CAGGTTTCGAAACAAATTGA+TGG | 0.406467 | 2_3:-39230962 | None:intergenic |
| GCGGTGGAGGAGGGTTTGTA+AGG | 0.409449 | 2_3:-39230386 | None:intergenic |
| TCCAGATTTCTGTAATCATC+AGG | 0.413475 | 2_3:-39230981 | None:intergenic |
| TACAGGCATATCCAACCAAC+AGG | 0.414999 | 2_3:+39230502 | Msa0291070:CDS |
| AGTGAACAAACTCCTTCATT+TGG | 0.419970 | 2_3:-39234753 | None:intergenic |
| CGTGAGTTGAAGAGGCTTAG+TGG | 0.427587 | 2_3:+39230708 | Msa0291070:CDS |
| TGTCTCGACTATTAGATTGC+TGG | 0.436263 | 2_3:-39234363 | None:intergenic |
| AAACCCTCATCCACCACAAC+CGG | 0.443154 | 2_3:+39230569 | Msa0291070:CDS |
| GGATTAGCGTCGGCCGGTTG+TGG | 0.443586 | 2_3:-39230582 | None:intergenic |
| CGGCGGCTGGCGGTGGAGGA+GGG | 0.444108 | 2_3:-39230185 | None:intergenic |
| CGGCGGCCGGCGGTGGAGGA+GGG | 0.453878 | 2_3:-39230395 | None:intergenic |
| GGATTAAACAAACTATGTTC+TGG | 0.457730 | 2_3:-39230870 | None:intergenic |
| ACGAATAACTTCTTTGTTGG+TGG | 0.458657 | 2_3:-39230688 | None:intergenic |
| TAAAATGCAATAGGTTCTGA+TGG | 0.462667 | 2_3:+39234645 | Msa0291070:intron |
| TCGGCCGGTTGTGGTGGATG+AGG | 0.465572 | 2_3:-39230573 | None:intergenic |
| ATAACTTCTTTGTTGGTGGT+TGG | 0.466863 | 2_3:-39230684 | None:intergenic |
| TAATAGTCGAGATCCGGGTT+AGG | 0.472037 | 2_3:+39234947 | Msa0291070:three_prime_UTR |
| TTGAGGACTTACTTCAAAGT+TGG | 0.473329 | 2_3:-39231248 | None:intergenic |
| ATTAGATTGCTGGCCATTGT+TGG | 0.475028 | 2_3:-39234353 | None:intergenic |
| GGAACAAATTATTAGTGAGT+TGG | 0.481276 | 2_3:+39230524 | Msa0291070:CDS |
| CGCTAATTCCAGTTCGACAA+TGG | 0.485959 | 2_3:+39230416 | Msa0291070:CDS |
| GAATCAACCATTGTCAAAAT+GGG | 0.486080 | 2_3:-39230603 | None:intergenic |
| TCGTGGCTTGAACGCAATCC+TGG | 0.486195 | 2_3:+39231044 | Msa0291070:CDS |
| AGGTGATGATGCTGTGATGC+TGG | 0.487466 | 2_3:+39234708 | Msa0291070:CDS |
| ACTAATAATTTGTTCCCTGT+TGG | 0.487749 | 2_3:-39230517 | None:intergenic |
| CGATCGTATCTATCAACTAC+AGG | 0.488463 | 2_3:+39230485 | Msa0291070:CDS |
| GAGAATCAAACCCGGATCTC+CGG | 0.494063 | 2_3:-39234986 | None:intergenic |
| AGGACTTACTTCAAAGTTGG+CGG | 0.494921 | 2_3:-39231245 | None:intergenic |
| TCAGACACCGGAAATGGAAA+GGG | 0.498482 | 2_3:+39234318 | Msa0291070:intron |
| CGGCCGGTTGTGGTGGATGA+GGG | 0.499241 | 2_3:-39230572 | None:intergenic |
| AGAAGCATCGGATCACCATC+AGG | 0.500172 | 2_3:-39230912 | None:intergenic |
| CTACTGCCTTTCAAAATAGC+TGG | 0.500559 | 2_3:-39234919 | None:intergenic |
| GGTTCTGATGGGTTTGCCGT+TGG | 0.507165 | 2_3:+39234657 | Msa0291070:intron |
| TTCAGACACCGGAAATGGAA+AGG | 0.511032 | 2_3:+39234317 | Msa0291070:intron |
| ATAATTTGTTCCCTGTTGGT+TGG | 0.514061 | 2_3:-39230513 | None:intergenic |
| CGCTAATTCCAGTTTGACAA+TGG | 0.515282 | 2_3:+39230206 | Msa0291070:exon |
| GATGAAGATGCTAGAGCAAA+AGG | 0.518055 | 2_3:+39234688 | Msa0291070:CDS |
| AAGTTATTCGTGAGTTGAAG+AGG | 0.523412 | 2_3:+39230700 | Msa0291070:CDS |
| AAACTGGAATTAGCGGCGGC+TGG | 0.530827 | 2_3:-39230198 | None:intergenic |
| ATACCTTGTTCATTGTTGGT+TGG | 0.548488 | 2_3:-39230294 | None:intergenic |
| TTAGCGTCGGCCGGTTGTGG+TGG | 0.548554 | 2_3:-39230579 | None:intergenic |
| CCGGGTTTGATTCTCGGCAA+TGG | 0.553127 | 2_3:+39234994 | Msa0291070:three_prime_UTR |
| TACAAACCCTCCTCCACCGC+CGG | 0.553250 | 2_3:+39230389 | Msa0291070:CDS |
| CATTGTCAAACTGGAATTAG+CGG | 0.554257 | 2_3:-39230205 | None:intergenic |
| AAAATGCAATAGGTTCTGAT+GGG | 0.560085 | 2_3:+39234646 | Msa0291070:intron |
| CATTGTCGAACTGGAATTAG+CGG | 0.561644 | 2_3:-39230415 | None:intergenic |
| ACTATGTTCTGGTGAAGCAA+AGG | 0.570024 | 2_3:-39230859 | None:intergenic |
| GAACTGGAATTAGCGGCGGC+CGG | 0.573910 | 2_3:-39230408 | None:intergenic |
| CTGGAATTAGCGGCGGCCGG+CGG | 0.578842 | 2_3:-39230405 | None:intergenic |
| ATTGAGAAAACTTGTGTCGT+TGG | 0.579887 | 2_3:+39230816 | Msa0291070:CDS |
| ATAGCTGGTAGTATTGAGAA+AGG | 0.584255 | 2_3:-39234904 | None:intergenic |
| AAGTCGTATCGATAAACTAA+AGG | 0.586014 | 2_3:+39230656 | Msa0291070:CDS |
| ACTTACTTCAAAGTTGGCGG+CGG | 0.600192 | 2_3:-39231242 | None:intergenic |
| GAGATGTTAGAGCCAAATGA+AGG | 0.610586 | 2_3:+39234741 | Msa0291070:three_prime_UTR |
| TCTTAATTGTAGTACTAGTG+TGG | 0.613934 | 2_3:+39234824 | Msa0291070:three_prime_UTR |
| TCTTCATCATCATGCTCCAA+CGG | 0.617314 | 2_3:-39234673 | None:intergenic |
| AAAATGGGATTAGCGTCGGC+CGG | 0.620552 | 2_3:-39230588 | None:intergenic |
| TCGTATCGATAAACTAAAGG+AGG | 0.621892 | 2_3:+39230659 | Msa0291070:CDS |
| CTGGAATTAGCGGCGGCTGG+CGG | 0.623774 | 2_3:-39230195 | None:intergenic |
| TCTGTATCAATGCTAAGTCG+TGG | 0.641490 | 2_3:+39231027 | Msa0291070:CDS |
| TGTCAAAATGGGATTAGCGT+CGG | 0.644494 | 2_3:-39230592 | None:intergenic |
| CCATTGCCGAGAATCAAACC+CGG | 0.652634 | 2_3:-39234994 | None:intergenic |
| AAAAGCCAGATATCCTAACC+CGG | 0.662428 | 2_3:-39234960 | None:intergenic |
| GATCCAACCAACAATGAACA+AGG | 0.663048 | 2_3:+39230291 | Msa0291070:CDS |
| ACACTCAAATCATTAACACC+AGG | 0.670543 | 2_3:-39231062 | None:intergenic |
| TGTCAAACTGGAATTAGCGG+CGG | 0.685168 | 2_3:-39230202 | None:intergenic |
| TGTCGAACTGGAATTAGCGG+CGG | 0.685336 | 2_3:-39230412 | None:intergenic |
| ACAGGCATATCCAACCAACA+GGG | 0.734249 | 2_3:+39230503 | Msa0291070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAGAATTTTAAATT+TGG | + | chr2_3:39231286-39231305 | Msa0291070:intron | 10.0% |
| !!! | TCATAATAATTTTATTGTTT+TGG | - | chr2_3:39231882-39231901 | None:intergenic | 10.0% |
| !! | TACTAGATAATATATAATAT+TGG | + | chr2_3:39232143-39232162 | Msa0291070:intron | 10.0% |
| !! | TAAAATTAGTTATATTACCT+TGG | + | chr2_3:39231310-39231329 | Msa0291070:intron | 15.0% |
| !! | AATTATGACTAAATTATCAT+TGG | + | chr2_3:39231454-39231473 | Msa0291070:intron | 15.0% |
| !! | ATTATGACTAAATTATCATT+GGG | + | chr2_3:39231455-39231474 | Msa0291070:intron | 15.0% |
| !!! | TTTGTTAATTTATTTTAGTG+TGG | + | chr2_3:39231597-39231616 | Msa0291070:intron | 15.0% |
| !! | AATAATATTGATGAACAATA+AGG | - | chr2_3:39231763-39231782 | None:intergenic | 15.0% |
| !! | AGATATTCAAATTTATTGTA+TGG | - | chr2_3:39233447-39233466 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTTTTCTTTTCT+GGG | - | chr2_3:39230138-39230157 | None:intergenic | 20.0% |
| !! | TCTTCTTACTAAAAATGATT+TGG | + | chr2_3:39230932-39230951 | Msa0291070:CDS | 20.0% |
| !!! | ATTAATTTGCATGTTTTTTC+AGG | + | chr2_3:39231198-39231217 | Msa0291070:intron | 20.0% |
| !! | GATAATTTAGTCATGATTTA+GGG | - | chr2_3:39231500-39231519 | None:intergenic | 20.0% |
| !! | TGATAATTTAGTCATGATTT+AGG | - | chr2_3:39231501-39231520 | None:intergenic | 20.0% |
| !! | AATCATGACTAAATTATCAT+TGG | + | chr2_3:39231502-39231521 | Msa0291070:intron | 20.0% |
| !! | ATCATGACTAAATTATCATT+GGG | + | chr2_3:39231503-39231522 | Msa0291070:intron | 20.0% |
| !! | CAATATTATTCAGTATATAG+TGG | + | chr2_3:39231773-39231792 | Msa0291070:intron | 20.0% |
| !! | AAAAATTCTACAACTAACAA+TGG | - | chr2_3:39231850-39231869 | None:intergenic | 20.0% |
| !! | ATGTTGTTATATCGTATTTA+TGG | + | chr2_3:39232093-39232112 | Msa0291070:intron | 20.0% |
| !! | TAAGTAGTTTACTGTTAAAT+TGG | + | chr2_3:39232371-39232390 | Msa0291070:intron | 20.0% |
| !!! | ATTTTAATTGTTCAGAGTTA+AGG | + | chr2_3:39234586-39234605 | Msa0291070:intron | 20.0% |
| !! | AATTACCAAACATTATTCTT+TGG | - | chr2_3:39234622-39234641 | None:intergenic | 20.0% |
| !! | GTAATTGATTAAAATGCAAT+AGG | + | chr2_3:39234636-39234655 | Msa0291070:intron | 20.0% |
| !!! | GTGGTTTTTTTTTTCTTTTC+TGG | - | chr2_3:39230139-39230158 | None:intergenic | 25.0% |
| !! | AAGTCGTATCGATAAATTAA+TGG | + | chr2_3:39230266-39230285 | Msa0291070:CDS | 25.0% |
| !!! | TTTTTAGTAAGAAGAAGCAT+CGG | - | chr2_3:39230927-39230946 | None:intergenic | 25.0% |
| ! | AGTTATATTACCTTGGTTAT+TGG | + | chr2_3:39231317-39231336 | Msa0291070:intron | 25.0% |
| ! | AACAGAAATAAACAAATGAC+AGG | - | chr2_3:39231672-39231691 | None:intergenic | 25.0% |
| ! | AGGTAAAACTTTAACTATGT+TGG | - | chr2_3:39232174-39232193 | None:intergenic | 25.0% |
| !! | ACATAGTTAAAGTTTTACCT+TGG | + | chr2_3:39232174-39232193 | Msa0291070:intron | 25.0% |
| ! | TTTGGAAGTTCAAATAATCA+AGG | - | chr2_3:39232200-39232219 | None:intergenic | 25.0% |
| !!! | TGTGTTGTTATTTGGAATTT+TGG | + | chr2_3:39232242-39232261 | Msa0291070:intron | 25.0% |
| !!! | TTGTTATTTGGAATTTTGGA+TGG | + | chr2_3:39232246-39232265 | Msa0291070:intron | 25.0% |
| ! | TTTGCTGCTAATTTACTATT+TGG | + | chr2_3:39232562-39232581 | Msa0291070:intron | 25.0% |
| ! | TTGCTGCTAATTTACTATTT+GGG | + | chr2_3:39232563-39232582 | Msa0291070:intron | 25.0% |
| ! | TAGAATCATTGGTCAAAATA+GGG | - | chr2_3:39232608-39232627 | None:intergenic | 25.0% |
| ! | ATAGAATCATTGGTCAAAAT+AGG | - | chr2_3:39232609-39232628 | None:intergenic | 25.0% |
| ! | TGTGTTAAAAGTCTAATTGA+TGG | - | chr2_3:39232770-39232789 | None:intergenic | 25.0% |
| !! | TCAATTAGACTTTTAACACA+TGG | + | chr2_3:39232770-39232789 | Msa0291070:intron | 25.0% |
| !!! | TAGCTTCTCAATTTTTGTTT+TGG | - | chr2_3:39233021-39233040 | None:intergenic | 25.0% |
| ! | TTGGATTCTCTTTATTAATG+TGG | + | chr2_3:39233504-39233523 | Msa0291070:intron | 25.0% |
| ! | TGGATTCTCTTTATTAATGT+GGG | + | chr2_3:39233505-39233524 | Msa0291070:intron | 25.0% |
| ! | AATTGTCAACTAGAGTTTAT+AGG | + | chr2_3:39233592-39233611 | Msa0291070:intron | 25.0% |
| ! | ACATGGAAAACAGAAATAAA+AGG | - | chr2_3:39233635-39233654 | None:intergenic | 25.0% |
| ! | TATCAATCAAAAACATGTCT+GGG | - | chr2_3:39233810-39233829 | None:intergenic | 25.0% |
| !!! | ACATGTTTTTGATTGATACT+TGG | + | chr2_3:39233812-39233831 | Msa0291070:intron | 25.0% |
| !! | ATACTTGGACTAAATTTTGA+GGG | + | chr2_3:39233827-39233846 | Msa0291070:intron | 25.0% |
| ! | ACATAACAGAATGCAATTAA+AGG | - | chr2_3:39233863-39233882 | None:intergenic | 25.0% |
| ! | TAAGTCATTTACATTGTTGT+GGG | + | chr2_3:39233985-39234004 | Msa0291070:intron | 25.0% |
| ! | CAAAACCAAAGAATAATGTT+TGG | + | chr2_3:39234614-39234633 | Msa0291070:intron | 25.0% |
| !! | ACTAATAATTTGTTCCCTGT+TGG | - | chr2_3:39230520-39230539 | None:intergenic | 30.0% |
| GGAACAAATTATTAGTGAGT+TGG | + | chr2_3:39230524-39230543 | Msa0291070:CDS | 30.0% | |
| GAATCAACCATTGTCAAAAT+GGG | - | chr2_3:39230606-39230625 | None:intergenic | 30.0% | |
| !! | CATTTTGACAATGGTTGATT+CGG | + | chr2_3:39230605-39230624 | Msa0291070:CDS | 30.0% |
| ! | AAGTCGTATCGATAAACTAA+AGG | + | chr2_3:39230656-39230675 | Msa0291070:CDS | 30.0% |
| ! | TTTCTCAATCATCTTTTCCA+AGG | - | chr2_3:39230805-39230824 | None:intergenic | 30.0% |
| GGATTAAACAAACTATGTTC+TGG | - | chr2_3:39230873-39230892 | None:intergenic | 30.0% | |
| ! | GGAAAGATAAAAAGCATATC+TGG | - | chr2_3:39230894-39230913 | None:intergenic | 30.0% |
| !! | ATGCTTTTTATCTTTCCTGA+TGG | + | chr2_3:39230897-39230916 | Msa0291070:CDS | 30.0% |
| !!! | AATTTGCATGTTTTTTCAGG+AGG | + | chr2_3:39231201-39231220 | Msa0291070:intron | 30.0% |
| ! | AAGTAAGTCCTCAATTTGTT+TGG | + | chr2_3:39231257-39231276 | Msa0291070:intron | 30.0% |
| TTGGTTATTGGTACTGTTAT+GGG | + | chr2_3:39231329-39231348 | Msa0291070:intron | 30.0% | |
| TAAATTGCAACTGTGTGAAT+CGG | - | chr2_3:39231373-39231392 | None:intergenic | 30.0% | |
| AATTAAGAGGCAAGAGATTT+AGG | - | chr2_3:39231823-39231842 | None:intergenic | 30.0% | |
| TAACAATGGCATCAATTAAG+AGG | - | chr2_3:39231836-39231855 | None:intergenic | 30.0% | |
| TCCATTTCATAGAAACAAAC+TGG | - | chr2_3:39232007-39232026 | None:intergenic | 30.0% | |
| !! | AGTTTGTTTCTATGAAATGG+AGG | + | chr2_3:39232006-39232025 | Msa0291070:intron | 30.0% |
| TGAACTTCCAAATTATGTGA+AGG | + | chr2_3:39232208-39232227 | Msa0291070:intron | 30.0% | |
| !! | GCATTATTGATGACGATATT+TGG | + | chr2_3:39232283-39232302 | Msa0291070:intron | 30.0% |
| !! | TATTGATGACGATATTTGGA+TGG | + | chr2_3:39232287-39232306 | Msa0291070:intron | 30.0% |
| !! | GTGATGTGTTTTGTTCTATA+GGG | - | chr2_3:39232490-39232509 | None:intergenic | 30.0% |
| !! | AGTGATGTGTTTTGTTCTAT+AGG | - | chr2_3:39232491-39232510 | None:intergenic | 30.0% |
| CTAGGAAGTAGTACAATTAA+AGG | - | chr2_3:39232879-39232898 | None:intergenic | 30.0% | |
| ! | ATTGATTGCTATTACTCCTA+GGG | + | chr2_3:39232899-39232918 | Msa0291070:intron | 30.0% |
| GTGATCTCATTATACATACA+TGG | + | chr2_3:39232966-39232985 | Msa0291070:intron | 30.0% | |
| !! | AATGTGATAATGTTGACTCT+TGG | - | chr2_3:39233128-39233147 | None:intergenic | 30.0% |
| ! | GCTAATTGCTATTGTTGATT+TGG | + | chr2_3:39233485-39233504 | Msa0291070:intron | 30.0% |
| TGTATCTTGTGAGTTTAGTT+AGG | + | chr2_3:39233531-39233550 | Msa0291070:intron | 30.0% | |
| CATAGACAAAATAACAGCTT+AGG | - | chr2_3:39233689-39233708 | None:intergenic | 30.0% | |
| CAACACAAATAAAGAGAACA+AGG | - | chr2_3:39233725-39233744 | None:intergenic | 30.0% | |
| ! | CTTGTTCTCTTTATTTGTGT+TGG | + | chr2_3:39233723-39233742 | Msa0291070:intron | 30.0% |
| ! | TTGGTTGATATATGACATGA+GGG | + | chr2_3:39233742-39233761 | Msa0291070:intron | 30.0% |
| ATCAATCAAAAACATGTCTG+GGG | - | chr2_3:39233809-39233828 | None:intergenic | 30.0% | |
| GTATCAATCAAAAACATGTC+TGG | - | chr2_3:39233811-39233830 | None:intergenic | 30.0% | |
| ! | GATACTTGGACTAAATTTTG+AGG | + | chr2_3:39233826-39233845 | Msa0291070:intron | 30.0% |
| !! | CTAAATTTTGAGGGAGAAAA+TGG | + | chr2_3:39233836-39233855 | Msa0291070:intron | 30.0% |
| GCATTCTGTTATGTTTATTG+AGG | + | chr2_3:39233869-39233888 | Msa0291070:intron | 30.0% | |
| TTGGATAGCTTGATAAAAGA+GGG | + | chr2_3:39233902-39233921 | Msa0291070:intron | 30.0% | |
| CTAAGTCATTTACATTGTTG+TGG | + | chr2_3:39233984-39234003 | Msa0291070:intron | 30.0% | |
| AAGTCAAGAAAAACTCTGTA+AGG | + | chr2_3:39234394-39234413 | Msa0291070:intron | 30.0% | |
| !!! | TCTTCTTCTTTTGAAGTCAA+TGG | + | chr2_3:39234434-39234453 | Msa0291070:intron | 30.0% |
| ! | TAAAATGCAATAGGTTCTGA+TGG | + | chr2_3:39234645-39234664 | Msa0291070:intron | 30.0% |
| ! | AAAATGCAATAGGTTCTGAT+GGG | + | chr2_3:39234646-39234665 | Msa0291070:intron | 30.0% |
| TCTTAATTGTAGTACTAGTG+TGG | + | chr2_3:39234824-39234843 | Msa0291070:three_prime_UTR | 30.0% | |
| !! | ATACTACCAGCTATTTTGAA+AGG | + | chr2_3:39234913-39234932 | Msa0291070:three_prime_UTR | 30.0% |
| CATTGTCAAACTGGAATTAG+CGG | - | chr2_3:39230208-39230227 | None:intergenic | 35.0% | |
| CAGTTTGACAATGGTTGATT+CGG | + | chr2_3:39230215-39230234 | Msa0291070:exon | 35.0% | |
| TATCGATACGACTTTCGATT+TGG | - | chr2_3:39230260-39230279 | None:intergenic | 35.0% | |
| ATACCTTGTTCATTGTTGGT+TGG | - | chr2_3:39230297-39230316 | None:intergenic | 35.0% | |
| ACGAATACCTTGTTCATTGT+TGG | - | chr2_3:39230301-39230320 | None:intergenic | 35.0% | |
| AAAATCAACCATTGTCGAAC+TGG | - | chr2_3:39230427-39230446 | None:intergenic | 35.0% | |
| !! | ATAATTTGTTCCCTGTTGGT+TGG | - | chr2_3:39230516-39230535 | None:intergenic | 35.0% |
| CGAATCAACCATTGTCAAAA+TGG | - | chr2_3:39230607-39230626 | None:intergenic | 35.0% | |
| TATCGATACGACTTTCGATT+TGG | - | chr2_3:39230260-39230279 | None:intergenic | 35.0% | |
| ! | TCGTATCGATAAACTAAAGG+AGG | + | chr2_3:39230659-39230678 | Msa0291070:CDS | 35.0% |
| !! | ATAACTTCTTTGTTGGTGGT+TGG | - | chr2_3:39230687-39230706 | None:intergenic | 35.0% |
| ACGAATAACTTCTTTGTTGG+TGG | - | chr2_3:39230691-39230710 | None:intergenic | 35.0% | |
| CTCACGAATAACTTCTTTGT+TGG | - | chr2_3:39230694-39230713 | None:intergenic | 35.0% | |
| ! | AAGTTATTCGTGAGTTGAAG+AGG | + | chr2_3:39230700-39230719 | Msa0291070:CDS | 35.0% |
| ATTGAGAAAACTTGTGTCGT+TGG | + | chr2_3:39230816-39230835 | Msa0291070:CDS | 35.0% | |
| CAGGTTTCGAAACAAATTGA+TGG | - | chr2_3:39230965-39230984 | None:intergenic | 35.0% | |
| ACCTGATGATTACAGAAATC+TGG | + | chr2_3:39230980-39230999 | Msa0291070:CDS | 35.0% | |
| TCCAGATTTCTGTAATCATC+AGG | - | chr2_3:39230984-39231003 | None:intergenic | 35.0% | |
| ACACTCAAATCATTAACACC+AGG | - | chr2_3:39231065-39231084 | None:intergenic | 35.0% | |
| TAGTATATCCAATCCAGCAA+AGG | - | chr2_3:39231161-39231180 | None:intergenic | 35.0% | |
| TTGAGGACTTACTTCAAAGT+TGG | - | chr2_3:39231251-39231270 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTTGGTGTT+TGG | + | chr2_3:39231264-39231283 | Msa0291070:intron | 35.0% |
| ACCAAACACCAAACAAATTG+AGG | - | chr2_3:39231268-39231287 | None:intergenic | 35.0% | |
| CATAACAGTACCAATAACCA+AGG | - | chr2_3:39231330-39231349 | None:intergenic | 35.0% | |
| CTTGGTTATTGGTACTGTTA+TGG | + | chr2_3:39231328-39231347 | Msa0291070:intron | 35.0% | |
| AAATTGCAACTGTGTGAATC+GGG | - | chr2_3:39231372-39231391 | None:intergenic | 35.0% | |
| TTCACACAGTTGCAATTTAC+AGG | + | chr2_3:39231374-39231393 | Msa0291070:intron | 35.0% | |
| TCACACAGTTGCAATTTACA+GGG | + | chr2_3:39231375-39231394 | Msa0291070:intron | 35.0% | |
| GGGAAAAAATAGATCGACAA+TGG | + | chr2_3:39231395-39231414 | Msa0291070:intron | 35.0% | |
| ! | TGTGTGTTTGTCTTTTCCAT+TGG | + | chr2_3:39231526-39231545 | Msa0291070:intron | 35.0% |
| !! | TAGTGTGGAATTTGCTAAGT+AGG | + | chr2_3:39231612-39231631 | Msa0291070:intron | 35.0% |
| !! | GCCAGTTTGTTTCTATGAAA+TGG | + | chr2_3:39232003-39232022 | Msa0291070:intron | 35.0% |
| ATTTGTGTATAGTAGCGCTT+AGG | + | chr2_3:39232051-39232070 | Msa0291070:intron | 35.0% | |
| AATGATGCACATACTAACCA+GGG | - | chr2_3:39232122-39232141 | None:intergenic | 35.0% | |
| AGTTCAAATAATCAAGGCCA+AGG | - | chr2_3:39232194-39232213 | None:intergenic | 35.0% | |
| AGGCTTTCCTTCACATAATT+TGG | - | chr2_3:39232218-39232237 | None:intergenic | 35.0% | |
| TCCAAATAACAACACAACAC+AGG | - | chr2_3:39232238-39232257 | None:intergenic | 35.0% | |
| ! | TTTTGTTCTATAGGGATGTG+AGG | - | chr2_3:39232482-39232501 | None:intergenic | 35.0% |
| CAGTCAGGAAATAGAATCAT+TGG | - | chr2_3:39232619-39232638 | None:intergenic | 35.0% | |
| CAATGATTCTATTTCCTGAC+TGG | + | chr2_3:39232617-39232636 | Msa0291070:intron | 35.0% | |
| ATAGAGACAATTGTTGTGGA+AGG | - | chr2_3:39232678-39232697 | None:intergenic | 35.0% | |
| GGATATAGAGACAATTGTTG+TGG | - | chr2_3:39232682-39232701 | None:intergenic | 35.0% | |
| TGCTTACAATAGGACTTATG+TGG | - | chr2_3:39232703-39232722 | None:intergenic | 35.0% | |
| TTGAGTTATGGCATATAGAG+AGG | - | chr2_3:39232808-39232827 | None:intergenic | 35.0% | |
| !! | TCTTCTCAAGCATTGAGTTA+TGG | - | chr2_3:39232820-39232839 | None:intergenic | 35.0% |
| GGAGTAATAGCAATCAATCT+AGG | - | chr2_3:39232897-39232916 | None:intergenic | 35.0% | |
| ! | GATTGATTGCTATTACTCCT+AGG | + | chr2_3:39232898-39232917 | Msa0291070:intron | 35.0% |
| AGTATCATCTACTTGACTCA+CGG | + | chr2_3:39233040-39233059 | Msa0291070:intron | 35.0% | |
| TTAAGAAACCTTTCTGCTTG+TGG | + | chr2_3:39233084-39233103 | Msa0291070:intron | 35.0% | |
| ATACATGTCATTACCTGTGT+AGG | + | chr2_3:39233186-39233205 | Msa0291070:intron | 35.0% | |
| ! | GATTTGACTTTCGTGAGAAA+AGG | - | chr2_3:39233311-39233330 | None:intergenic | 35.0% |
| GTCAAATCTGTAGTTGAGTA+AGG | + | chr2_3:39233323-39233342 | Msa0291070:intron | 35.0% | |
| ! | TTCTGTTTTCCATGTTGAAG+AGG | + | chr2_3:39233640-39233659 | Msa0291070:intron | 35.0% |
| ! | TCTGTTTTCCATGTTGAAGA+GGG | + | chr2_3:39233641-39233660 | Msa0291070:intron | 35.0% |
| ! | GTTGGTTGATATATGACATG+AGG | + | chr2_3:39233741-39233760 | Msa0291070:intron | 35.0% |
| TTGATATATGACATGAGGGA+TGG | + | chr2_3:39233746-39233765 | Msa0291070:intron | 35.0% | |
| TGATATATGACATGAGGGAT+GGG | + | chr2_3:39233747-39233766 | Msa0291070:intron | 35.0% | |
| ATGTTTATTGAGGCGTAAAG+TGG | + | chr2_3:39233879-39233898 | Msa0291070:intron | 35.0% | |
| GTTGGATAGCTTGATAAAAG+AGG | + | chr2_3:39233901-39233920 | Msa0291070:intron | 35.0% | |
| ATAGCTTGATAAAAGAGGGT+TGG | + | chr2_3:39233906-39233925 | Msa0291070:intron | 35.0% | |
| ! | AGTTTAGAATATGCACTGTC+TGG | + | chr2_3:39234036-39234055 | Msa0291070:intron | 35.0% |
| CATGTAATGCACTAATGTGT+TGG | + | chr2_3:39234062-39234081 | Msa0291070:intron | 35.0% | |
| ! | TAATGCACTAATGTGTTGGT+AGG | + | chr2_3:39234066-39234085 | Msa0291070:intron | 35.0% |
| !!! | TTGCATGTTTTTTCAGACAC+CGG | + | chr2_3:39234306-39234325 | Msa0291070:intron | 35.0% |
| ! | AGTTTTTCCCTTTCCATTTC+CGG | - | chr2_3:39234328-39234347 | None:intergenic | 35.0% |
| TATACATATGTTAGCCCACA+TGG | + | chr2_3:39234502-39234521 | Msa0291070:intron | 35.0% | |
| AGTGAACAAACTCCTTCATT+TGG | - | chr2_3:39234756-39234775 | None:intergenic | 35.0% | |
| !!! | GCTGTTTTGAGTTCAAAGTT+GGG | - | chr2_3:39234795-39234814 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTGAGTTCAAAGT+TGG | - | chr2_3:39234796-39234815 | None:intergenic | 35.0% |
| ! | ATAGCTGGTAGTATTGAGAA+AGG | - | chr2_3:39234907-39234926 | None:intergenic | 35.0% |
| !! | GCATTTTAATAGTCGAGATC+CGG | + | chr2_3:39234941-39234960 | Msa0291070:three_prime_UTR | 35.0% |
| !! | CATTTTAATAGTCGAGATCC+GGG | + | chr2_3:39234942-39234961 | Msa0291070:three_prime_UTR | 35.0% |
| CGCTAATTCCAGTTTGACAA+TGG | + | chr2_3:39230206-39230225 | Msa0291070:exon | 40.0% | |
| CGAATCAACCATTGTCAAAC+TGG | - | chr2_3:39230217-39230236 | None:intergenic | 40.0% | |
| !! | ACGACTTTCGATTTGGAGTA+TGG | - | chr2_3:39230253-39230272 | None:intergenic | 40.0% |
| GATCCAACCAACAATGAACA+AGG | + | chr2_3:39230291-39230310 | Msa0291070:CDS | 40.0% | |
| CATTGTCGAACTGGAATTAG+CGG | - | chr2_3:39230418-39230437 | None:intergenic | 40.0% | |
| CGATCGTATCTATCAACTAC+AGG | + | chr2_3:39230485-39230504 | Msa0291070:CDS | 40.0% | |
| ! | TGTCAAAATGGGATTAGCGT+CGG | - | chr2_3:39230595-39230614 | None:intergenic | 40.0% |
| !! | CGCTAATCCCATTTTGACAA+TGG | + | chr2_3:39230596-39230615 | Msa0291070:CDS | 40.0% |
| !! | ACGACTTTCGATTTGGAGTA+TGG | - | chr2_3:39230253-39230272 | None:intergenic | 40.0% |
| ACTATGTTCTGGTGAAGCAA+AGG | - | chr2_3:39230862-39230881 | None:intergenic | 40.0% | |
| TCTGTATCAATGCTAAGTCG+TGG | + | chr2_3:39231027-39231046 | Msa0291070:CDS | 40.0% | |
| !!! | TTTTGTTGCTTTGCCTTTGC+TGG | + | chr2_3:39231145-39231164 | Msa0291070:intron | 40.0% |
| AGGACTTACTTCAAAGTTGG+CGG | - | chr2_3:39231248-39231267 | None:intergenic | 40.0% | |
| TTATTGGTACTGTTATGGGC+TGG | + | chr2_3:39231333-39231352 | Msa0291070:intron | 40.0% | |
| !! | GGAATTTGCTAAGTAGGAAC+CGG | + | chr2_3:39231618-39231637 | Msa0291070:intron | 40.0% |
| ATGAACAATAAGGACTGCAG+AGG | - | chr2_3:39231753-39231772 | None:intergenic | 40.0% | |
| CACAACAGCTAAGATGCATT+GGG | - | chr2_3:39231924-39231943 | None:intergenic | 40.0% | |
| TATCGTATTTATGGAACCCC+TGG | + | chr2_3:39232102-39232121 | Msa0291070:intron | 40.0% | |
| ATGATGCACATACTAACCAG+GGG | - | chr2_3:39232121-39232140 | None:intergenic | 40.0% | |
| GAATGATGCACATACTAACC+AGG | - | chr2_3:39232123-39232142 | None:intergenic | 40.0% | |
| ! | GCCTGTGTTGTGTTGTTATT+TGG | + | chr2_3:39232234-39232253 | Msa0291070:intron | 40.0% |
| ATCGGATAAAATGGAGGAAG+GGG | - | chr2_3:39232411-39232430 | None:intergenic | 40.0% | |
| CATCGGATAAAATGGAGGAA+GGG | - | chr2_3:39232412-39232431 | None:intergenic | 40.0% | |
| TTCTGTCCAAACCCATTATG+TGG | - | chr2_3:39232540-39232559 | None:intergenic | 40.0% | |
| TGGTCAAAATAGGGCCATAA+AGG | - | chr2_3:39232599-39232618 | None:intergenic | 40.0% | |
| ! | GTCCTCAAAGAGGTTTTCTA+CGG | - | chr2_3:39232652-39232671 | None:intergenic | 40.0% |
| ! | ACACTGGCTATGCTTACAAT+AGG | - | chr2_3:39232713-39232732 | None:intergenic | 40.0% |
| ! | CATAGCCAGTGTTATTACCA+AGG | + | chr2_3:39232721-39232740 | Msa0291070:intron | 40.0% |
| ! | CCTTTCCTTGGTAATAACAC+TGG | - | chr2_3:39232729-39232748 | None:intergenic | 40.0% |
| ! | CCAGTGTTATTACCAAGGAA+AGG | + | chr2_3:39232726-39232745 | Msa0291070:intron | 40.0% |
| TAAGTTTGTGTGCCTTTCCT+TGG | - | chr2_3:39232741-39232760 | None:intergenic | 40.0% | |
| ATGGCATATAGAGAGGAGTA+GGG | - | chr2_3:39232801-39232820 | None:intergenic | 40.0% | |
| TATGGCATATAGAGAGGAGT+AGG | - | chr2_3:39232802-39232821 | None:intergenic | 40.0% | |
| CCTAAGAAGTTGTATACCCT+AGG | - | chr2_3:39232918-39232937 | None:intergenic | 40.0% | |
| CCTAGGGTATACAACTTCTT+AGG | + | chr2_3:39232915-39232934 | Msa0291070:intron | 40.0% | |
| CTGTACCATAGTGTATCCAA+GGG | + | chr2_3:39233158-39233177 | Msa0291070:intron | 40.0% | |
| ATGACATGTATCAACTCCCT+TGG | - | chr2_3:39233177-39233196 | None:intergenic | 40.0% | |
| ! | ACGTGTCTGTTTCTCAAATC+TGG | - | chr2_3:39233231-39233250 | None:intergenic | 40.0% |
| AACAGACACGTTAGAGCTAA+TGG | + | chr2_3:39233240-39233259 | Msa0291070:intron | 40.0% | |
| ACAGACACGTTAGAGCTAAT+GGG | + | chr2_3:39233241-39233260 | Msa0291070:intron | 40.0% | |
| AATTCGCACGTTAATGTGTC+TGG | - | chr2_3:39233267-39233286 | None:intergenic | 40.0% | |
| TGACTTTCGTGAGAAAAGGA+GGG | - | chr2_3:39233307-39233326 | None:intergenic | 40.0% | |
| TTGACTTTCGTGAGAAAAGG+AGG | - | chr2_3:39233308-39233327 | None:intergenic | 40.0% | |
| TTTCCCTTGTTGGAGAAAGA+GGG | - | chr2_3:39233386-39233405 | None:intergenic | 40.0% | |
| ATTTCCCTTGTTGGAGAAAG+AGG | - | chr2_3:39233387-39233406 | None:intergenic | 40.0% | |
| AGTTAGGACTTCAAAACGAC+AGG | + | chr2_3:39233547-39233566 | Msa0291070:intron | 40.0% | |
| GTTAGGACTTCAAAACGACA+GGG | + | chr2_3:39233548-39233567 | Msa0291070:intron | 40.0% | |
| ! | CTGTTTTCCATGTTGAAGAG+GGG | + | chr2_3:39233642-39233661 | Msa0291070:intron | 40.0% |
| TTATTGAGGCGTAAAGTGGT+TGG | + | chr2_3:39233883-39233902 | Msa0291070:intron | 40.0% | |
| TTACTTGACATGAGAGCAGA+AGG | + | chr2_3:39233949-39233968 | Msa0291070:intron | 40.0% | |
| !! | GGTGTCATTAAACATGCTAG+CGG | + | chr2_3:39234087-39234106 | Msa0291070:intron | 40.0% |
| ! | GTGTCATTAAACATGCTAGC+GGG | + | chr2_3:39234088-39234107 | Msa0291070:intron | 40.0% |
| GGAATGTTGTCTCGTTGTAT+TGG | + | chr2_3:39234128-39234147 | Msa0291070:intron | 40.0% | |
| !!! | GTTTTTTCAGACACCGGAAA+TGG | + | chr2_3:39234312-39234331 | Msa0291070:intron | 40.0% |
| GAAAAACTCTCTGCCAACAA+TGG | + | chr2_3:39234340-39234359 | Msa0291070:CDS | 40.0% | |
| ATTAGATTGCTGGCCATTGT+TGG | - | chr2_3:39234356-39234375 | None:intergenic | 40.0% | |
| TGTCTCGACTATTAGATTGC+TGG | - | chr2_3:39234366-39234385 | None:intergenic | 40.0% | |
| !! | GCTTGTTAGCTAGTCTTACA+AGG | + | chr2_3:39234533-39234552 | Msa0291070:intron | 40.0% |
| TCTTCATCATCATGCTCCAA+CGG | - | chr2_3:39234676-39234695 | None:intergenic | 40.0% | |
| GATGAAGATGCTAGAGCAAA+AGG | + | chr2_3:39234688-39234707 | Msa0291070:CDS | 40.0% | |
| GAGATGTTAGAGCCAAATGA+AGG | + | chr2_3:39234741-39234760 | Msa0291070:three_prime_UTR | 40.0% | |
| CTACTGCCTTTCAAAATAGC+TGG | - | chr2_3:39234922-39234941 | None:intergenic | 40.0% | |
| AAAAGCCAGATATCCTAACC+CGG | - | chr2_3:39234963-39234982 | None:intergenic | 40.0% | |
| ! | GTTAGGTTTTGCGTGTTGTG+TGG | - | chr2_3:39230158-39230177 | None:intergenic | 45.0% |
| ! | TGGAGGAGGGTTTGTTTGTT+AGG | - | chr2_3:39230175-39230194 | None:intergenic | 45.0% |
| TGTCAAACTGGAATTAGCGG+CGG | - | chr2_3:39230205-39230224 | None:intergenic | 45.0% | |
| ! | AGGGTTTGTAAGGTTTTGCG+TGG | - | chr2_3:39230379-39230398 | None:intergenic | 45.0% |
| CGCTAATTCCAGTTCGACAA+TGG | + | chr2_3:39230416-39230435 | Msa0291070:CDS | 45.0% | |
| TACAGGCATATCCAACCAAC+AGG | + | chr2_3:39230502-39230521 | Msa0291070:CDS | 45.0% | |
| ACAGGCATATCCAACCAACA+GGG | + | chr2_3:39230503-39230522 | Msa0291070:CDS | 45.0% | |
| ! | GATTTTCGACGAAGAAGCCT+TGG | + | chr2_3:39230785-39230804 | Msa0291070:CDS | 45.0% |
| TTGCTTTGCCTTTGCTGGAT+TGG | + | chr2_3:39231150-39231169 | Msa0291070:intron | 45.0% | |
| ACTTACTTCAAAGTTGGCGG+CGG | - | chr2_3:39231245-39231264 | None:intergenic | 45.0% | |
| CGACAGTGATGTTAAGCCAA+TGG | - | chr2_3:39231545-39231564 | None:intergenic | 45.0% | |
| GGCTTAACATCACTGTCGTT+TGG | + | chr2_3:39231547-39231566 | Msa0291070:intron | 45.0% | |
| GCACAACAGCTAAGATGCAT+TGG | - | chr2_3:39231925-39231944 | None:intergenic | 45.0% | |
| TGCATCTTAGCTGTTGTGCA+AGG | + | chr2_3:39231926-39231945 | Msa0291070:intron | 45.0% | |
| GCATCGGATAAAATGGAGGA+AGG | - | chr2_3:39232413-39232432 | None:intergenic | 45.0% | |
| !! | TCTGTGGGCATCGGATAAAA+TGG | - | chr2_3:39232420-39232439 | None:intergenic | 45.0% |
| CTATAGGAGCTTTGCTCTGT+GGG | - | chr2_3:39232435-39232454 | None:intergenic | 45.0% | |
| ACTATAGGAGCTTTGCTCTG+TGG | - | chr2_3:39232436-39232455 | None:intergenic | 45.0% | |
| ACAGAGCAAAGCTCCTATAG+TGG | + | chr2_3:39232435-39232454 | Msa0291070:intron | 45.0% | |
| TAGGGATGTGAGGAAAGAGT+GGG | - | chr2_3:39232472-39232491 | None:intergenic | 45.0% | |
| ATAGGGATGTGAGGAAAGAG+TGG | - | chr2_3:39232473-39232492 | None:intergenic | 45.0% | |
| TCCAAACCCATTATGTGGCA+GGG | - | chr2_3:39232535-39232554 | None:intergenic | 45.0% | |
| AGGGCCATAAAGGAGAATCT+GGG | - | chr2_3:39232589-39232608 | None:intergenic | 45.0% | |
| TAGGGCCATAAAGGAGAATC+TGG | - | chr2_3:39232590-39232609 | None:intergenic | 45.0% | |
| CTCCGTAGAAAACCTCTTTG+AGG | + | chr2_3:39232647-39232666 | Msa0291070:intron | 45.0% | |
| CATGTTGTCCACAAGCAGAA+AGG | - | chr2_3:39233095-39233114 | None:intergenic | 45.0% | |
| CTTTCTGCTTGTGGACAACA+TGG | + | chr2_3:39233093-39233112 | Msa0291070:intron | 45.0% | |
| GCTGTACCATAGTGTATCCA+AGG | + | chr2_3:39233157-39233176 | Msa0291070:intron | 45.0% | |
| CAACTCCCTTGGATACACTA+TGG | - | chr2_3:39233166-39233185 | None:intergenic | 45.0% | |
| CATGTCATTACCTGTGTAGG+TGG | + | chr2_3:39233189-39233208 | Msa0291070:intron | 45.0% | |
| AAGACTAATGCCACCTACAC+AGG | - | chr2_3:39233202-39233221 | None:intergenic | 45.0% | |
| TCTGTAGTTGAGTAAGGTGC+TGG | + | chr2_3:39233329-39233348 | Msa0291070:intron | 45.0% | |
| TTCCCTTGTTGGAGAAAGAG+GGG | - | chr2_3:39233385-39233404 | None:intergenic | 45.0% | |
| CGTCGAAACATTTCCCTTGT+TGG | - | chr2_3:39233396-39233415 | None:intergenic | 45.0% | |
| GAAATGTTTCGACGTTCTCG+CGG | + | chr2_3:39233402-39233421 | Msa0291070:intron | 45.0% | |
| AAATGTTTCGACGTTCTCGC+GGG | + | chr2_3:39233403-39233422 | Msa0291070:intron | 45.0% | |
| !!! | CTGGGGACGATTTTGATTCA+AGG | - | chr2_3:39233792-39233811 | None:intergenic | 45.0% |
| CGGGTTCATGTTCTAGCATT+TGG | + | chr2_3:39234107-39234126 | Msa0291070:intron | 45.0% | |
| !! | GTACAAAAGTGTCCTAGCCA+CGG | - | chr2_3:39234168-39234187 | None:intergenic | 45.0% |
| TTCAGACACCGGAAATGGAA+AGG | + | chr2_3:39234317-39234336 | Msa0291070:intron | 45.0% | |
| TCAGACACCGGAAATGGAAA+GGG | + | chr2_3:39234318-39234337 | Msa0291070:intron | 45.0% | |
| ACAAGCACATGCATCCATGT+GGG | - | chr2_3:39234519-39234538 | None:intergenic | 45.0% | |
| AACAAGCACATGCATCCATG+TGG | - | chr2_3:39234520-39234539 | None:intergenic | 45.0% | |
| TAATAGTCGAGATCCGGGTT+AGG | + | chr2_3:39234947-39234966 | Msa0291070:three_prime_UTR | 45.0% | |
| !!! | AGGATATCTGGCTTTTACGC+CGG | + | chr2_3:39234967-39234986 | Msa0291070:three_prime_UTR | 45.0% |
| TGTCGAACTGGAATTAGCGG+CGG | - | chr2_3:39230415-39230434 | None:intergenic | 50.0% | |
| AAACCCTCATCCACCACAAC+CGG | + | chr2_3:39230569-39230588 | Msa0291070:CDS | 50.0% | |
| !! | AAAATGGGATTAGCGTCGGC+CGG | - | chr2_3:39230591-39230610 | None:intergenic | 50.0% |
| ! | CGTGAGTTGAAGAGGCTTAG+TGG | + | chr2_3:39230708-39230727 | Msa0291070:CDS | 50.0% |
| !! | AGAAGCATCGGATCACCATC+AGG | - | chr2_3:39230915-39230934 | None:intergenic | 50.0% |
| !! | GTTATGGGCTGGTGTGTGTT+AGG | + | chr2_3:39231344-39231363 | Msa0291070:intron | 50.0% |
| CATTGGGTGCGTGTTTGTCT+TGG | + | chr2_3:39231471-39231490 | Msa0291070:intron | 50.0% | |
| TTGCTAAGTAGGAACCGGCT+AGG | + | chr2_3:39231623-39231642 | Msa0291070:intron | 50.0% | |
| TGCTAAGTAGGAACCGGCTA+GGG | + | chr2_3:39231624-39231643 | Msa0291070:intron | 50.0% | |
| TGCAGAGGCAGTTCTTTGTC+TGG | - | chr2_3:39231738-39231757 | None:intergenic | 50.0% | |
| !! | GTGGGCATCGGATAAAATGG+AGG | - | chr2_3:39232417-39232436 | None:intergenic | 50.0% |
| GATGTGAGGAAAGAGTGGGA+GGG | - | chr2_3:39232468-39232487 | None:intergenic | 50.0% | |
| CATTATGTGGCAGGGAGTGA+GGG | - | chr2_3:39232527-39232546 | None:intergenic | 50.0% | |
| CTCACTCCCTGCCACATAAT+GGG | + | chr2_3:39232526-39232545 | Msa0291070:intron | 50.0% | |
| !! | TCCCTGCCACATAATGGGTT+TGG | + | chr2_3:39232531-39232550 | Msa0291070:intron | 50.0% |
| GTCCAAACCCATTATGTGGC+AGG | - | chr2_3:39232536-39232555 | None:intergenic | 50.0% | |
| TGGGCCCAGATTCTCCTTTA+TGG | + | chr2_3:39232582-39232601 | Msa0291070:intron | 50.0% | |
| TACGGAGACGATATCCAGTC+AGG | - | chr2_3:39232634-39232653 | None:intergenic | 50.0% | |
| ! | TGGAAGGTACGTCCTCAAAG+AGG | - | chr2_3:39232662-39232681 | None:intergenic | 50.0% |
| AGGAGGGCAAGGAGCAAATT+TGG | - | chr2_3:39233291-39233310 | None:intergenic | 50.0% | |
| TTCGTGAGAAAAGGAGGGCA+AGG | - | chr2_3:39233302-39233321 | None:intergenic | 50.0% | |
| TGGAGCATGGGTATTTGGCA+CGG | - | chr2_3:39233360-39233379 | None:intergenic | 50.0% | |
| TTGTTGGAGAAAGAGGGGAG+TGG | - | chr2_3:39233380-39233399 | None:intergenic | 50.0% | |
| ACTCCCCTCTTTCTCCAACA+AGG | + | chr2_3:39233379-39233398 | Msa0291070:intron | 50.0% | |
| CTCCCCTCTTTCTCCAACAA+GGG | + | chr2_3:39233380-39233399 | Msa0291070:intron | 50.0% | |
| CTGCAATCCCCTCTTCAACA+TGG | - | chr2_3:39233652-39233671 | None:intergenic | 50.0% | |
| TGGAAGAAATCTTGCGTCCG+TGG | + | chr2_3:39234148-39234167 | Msa0291070:intron | 50.0% | |
| ! | AGGTGATGATGCTGTGATGC+TGG | + | chr2_3:39234708-39234727 | Msa0291070:CDS | 50.0% |
| ! | GAGATCCGGGTTAGGATATC+TGG | + | chr2_3:39234955-39234974 | Msa0291070:three_prime_UTR | 50.0% |
| GAGAATCAAACCCGGATCTC+CGG | - | chr2_3:39234989-39235008 | None:intergenic | 50.0% | |
| GGAGATCCGGGTTTGATTCT+CGG | + | chr2_3:39234988-39235007 | Msa0291070:three_prime_UTR | 50.0% | |
| CCATTGCCGAGAATCAAACC+CGG | - | chr2_3:39234997-39235016 | None:intergenic | 50.0% | |
| AAACTGGAATTAGCGGCGGC+TGG | - | chr2_3:39230201-39230220 | None:intergenic | 55.0% | |
| TCGTGGCTTGAACGCAATCC+TGG | + | chr2_3:39231044-39231063 | Msa0291070:CDS | 55.0% | |
| GCTAAGTAGGAACCGGCTAG+GGG | + | chr2_3:39231625-39231644 | Msa0291070:intron | 55.0% | |
| CTAAGTAGGAACCGGCTAGG+GGG | + | chr2_3:39231626-39231645 | Msa0291070:intron | 55.0% | |
| GAGCTTTGCTCTGTGGGCAT+CGG | - | chr2_3:39232429-39232448 | None:intergenic | 55.0% | |
| !! | GGAGGGTGTCTTGCCACTAT+AGG | - | chr2_3:39232451-39232470 | None:intergenic | 55.0% |
| GGATGTGAGGAAAGAGTGGG+AGG | - | chr2_3:39232469-39232488 | None:intergenic | 55.0% | |
| CCATTATGTGGCAGGGAGTG+AGG | - | chr2_3:39232528-39232547 | None:intergenic | 55.0% | |
| CCTCACTCCCTGCCACATAA+TGG | + | chr2_3:39232525-39232544 | Msa0291070:intron | 55.0% | |
| GCATGGGTATTTGGCACGGT+GGG | - | chr2_3:39233356-39233375 | None:intergenic | 55.0% | |
| AGCATGGGTATTTGGCACGG+TGG | - | chr2_3:39233357-39233376 | None:intergenic | 55.0% | |
| GGGAGTGGAGCATGGGTATT+TGG | - | chr2_3:39233365-39233384 | None:intergenic | 55.0% | |
| GAAAGAGGGGAGTGGAGCAT+GGG | - | chr2_3:39233372-39233391 | None:intergenic | 55.0% | |
| AGAAAGAGGGGAGTGGAGCA+TGG | - | chr2_3:39233373-39233392 | None:intergenic | 55.0% | |
| GAAATCTTGCGTCCGTGGCT+AGG | + | chr2_3:39234153-39234172 | Msa0291070:intron | 55.0% | |
| !! | GGTTCTGATGGGTTTGCCGT+TGG | + | chr2_3:39234657-39234676 | Msa0291070:intron | 55.0% |
| ! | TGGCTTTTACGCCGGAGATC+CGG | + | chr2_3:39234975-39234994 | Msa0291070:three_prime_UTR | 55.0% |
| CCGGGTTTGATTCTCGGCAA+TGG | + | chr2_3:39234994-39235013 | Msa0291070:three_prime_UTR | 55.0% | |
| GCGGTGGAGGAGGGTTTGTA+AGG | - | chr2_3:39230389-39230408 | None:intergenic | 60.0% | |
| TACAAACCCTCCTCCACCGC+CGG | + | chr2_3:39230389-39230408 | Msa0291070:CDS | 60.0% | |
| GAACTGGAATTAGCGGCGGC+CGG | - | chr2_3:39230411-39230430 | None:intergenic | 60.0% | |
| ! | GCAGGGAGTGAGGGAGCATA+TGG | - | chr2_3:39232518-39232537 | None:intergenic | 60.0% |
| ! | GGCTTTTACGCCGGAGATCC+GGG | + | chr2_3:39234976-39234995 | Msa0291070:three_prime_UTR | 60.0% |
| CTGGAATTAGCGGCGGCTGG+CGG | - | chr2_3:39230198-39230217 | None:intergenic | 65.0% | |
| !! | CGGCCGGTTGTGGTGGATGA+GGG | - | chr2_3:39230575-39230594 | None:intergenic | 65.0% |
| !! | TCGGCCGGTTGTGGTGGATG+AGG | - | chr2_3:39230576-39230595 | None:intergenic | 65.0% |
| !! | TTAGCGTCGGCCGGTTGTGG+TGG | - | chr2_3:39230582-39230601 | None:intergenic | 65.0% |
| !! | GGATTAGCGTCGGCCGGTTG+TGG | - | chr2_3:39230585-39230604 | None:intergenic | 65.0% |
| TAGGAACCGGCTAGGGGGAG+AGG | + | chr2_3:39231631-39231650 | Msa0291070:intron | 65.0% | |
| AGGAACCGGCTAGGGGGAGA+GGG | + | chr2_3:39231632-39231651 | Msa0291070:intron | 65.0% | |
| GTCTTCCCTCTCCCCCTAGC+CGG | - | chr2_3:39231640-39231659 | None:intergenic | 65.0% | |
| GAATTAGCGGCGGCTGGCGG+TGG | - | chr2_3:39230195-39230214 | None:intergenic | 70.0% | |
| CTGGAATTAGCGGCGGCCGG+CGG | - | chr2_3:39230408-39230427 | None:intergenic | 70.0% | |
| TTAGCGGCGGCTGGCGGTGG+AGG | - | chr2_3:39230192-39230211 | None:intergenic | 75.0% | |
| GAATTAGCGGCGGCCGGCGG+TGG | - | chr2_3:39230405-39230424 | None:intergenic | 75.0% | |
| ! | CGGCGGCTGGCGGTGGAGGA+GGG | - | chr2_3:39230188-39230207 | None:intergenic | 80.0% |
| ! | TTAGCGGCGGCCGGCGGTGG+AGG | - | chr2_3:39230402-39230421 | None:intergenic | 80.0% |
| ! | GCGGCGGCTGGCGGTGGAGG+AGG | - | chr2_3:39230189-39230208 | None:intergenic | 85.0% |
| ! | CGGCGGCCGGCGGTGGAGGA+GGG | - | chr2_3:39230398-39230417 | None:intergenic | 85.0% |
| ! | GCGGCGGCCGGCGGTGGAGG+AGG | - | chr2_3:39230399-39230418 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 39230114 | 39235119 | 39230114 | ID=Msa0291070;Name=Msa0291070 |
| chr2_3 | mRNA | 39230114 | 39235119 | 39230114 | ID=Msa0291070-mRNA-1;Parent=Msa0291070;Name=Msa0291070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=111|0.5|0.8|0.8|0.25|0.6|5|384|370 |
| chr2_3 | exon | 39230114 | 39231121 | 39230114 | ID=Msa0291070-mRNA-1:exon:12714;Parent=Msa0291070-mRNA-1 |
| chr2_3 | exon | 39231220 | 39231258 | 39231220 | ID=Msa0291070-mRNA-1:exon:12715;Parent=Msa0291070-mRNA-1 |
| chr2_3 | exon | 39234322 | 39234410 | 39234322 | ID=Msa0291070-mRNA-1:exon:12716;Parent=Msa0291070-mRNA-1 |
| chr2_3 | exon | 39234601 | 39234610 | 39234601 | ID=Msa0291070-mRNA-1:exon:12717;Parent=Msa0291070-mRNA-1 |
| chr2_3 | exon | 39234658 | 39235119 | 39234658 | ID=Msa0291070-mRNA-1:exon:12718;Parent=Msa0291070-mRNA-1 |
| chr2_3 | five_prime_UTR | 39230114 | 39230224 | 39230114 | ID=Msa0291070-mRNA-1:five_prime_utr;Parent=Msa0291070-mRNA-1 |
| chr2_3 | CDS | 39230225 | 39231121 | 39230225 | ID=Msa0291070-mRNA-1:cds;Parent=Msa0291070-mRNA-1 |
| chr2_3 | CDS | 39231220 | 39231258 | 39231220 | ID=Msa0291070-mRNA-1:cds;Parent=Msa0291070-mRNA-1 |
| chr2_3 | CDS | 39234322 | 39234410 | 39234322 | ID=Msa0291070-mRNA-1:cds;Parent=Msa0291070-mRNA-1 |
| chr2_3 | CDS | 39234601 | 39234610 | 39234601 | ID=Msa0291070-mRNA-1:cds;Parent=Msa0291070-mRNA-1 |
| chr2_3 | CDS | 39234658 | 39234735 | 39234658 | ID=Msa0291070-mRNA-1:cds;Parent=Msa0291070-mRNA-1 |
| chr2_3 | three_prime_UTR | 39234736 | 39235119 | 39234736 | ID=Msa0291070-mRNA-1:three_prime_utr;Parent=Msa0291070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
