AlfalfaGEDB | Msa0212710

M. sativa cultivar zhongmu-4 / Msa0212710

KEGG: -
GO: -
PFAM: PF12734.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212710	XP_027929706.1	71.250	80	18	2	1	75	1	80	1.42e-31	115

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212710	sp\|Q9SKY1\|CSTM4_ARATH	52.000	75	32	2	1	75	1	71	8.44e-19	75.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212710	A0A4D6NCS9	71.250	80	18	2	1	75	1	80	6.76e-32	115

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0147790	Msa0212710	0.851845	6.805550e-61	-8.615850e-47
Msa0212710	Msa0235840	0.801120	1.045933e-48	-8.615850e-47
Msa0212710	Msa0253130	0.802393	5.729987e-49	-8.615850e-47
Msa0212710	Msa0253140	0.822459	2.342031e-53	-8.615850e-47
Msa0212710	Msa0351050	0.807347	5.284147e-50	-8.615850e-47
Msa0212710	Msa0816630	0.805631	1.216258e-49	-8.615850e-47
Msa0212710	Msa1212470	0.807675	4.501522e-50	-8.615850e-47
Msa0212710	Msa1221220	0.810132	1.341907e-50	-8.615850e-47
Msa0212710	Msa1329900	0.810442	1.150446e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212710	MtrunA17_Chr2g0312051	82.895	76	12	1	1	75	1	76	5.54e-34	110
Msa0212710	MtrunA17_Chr1g0166081	77.215	79	14	2	1	75	1	79	1.91e-31	104
Msa0212710	MtrunA17_Chr5g0417951	75.949	79	15	2	1	75	1	79	5.25e-31	103
Msa0212710	MtrunA17_Chr4g0048281	80.000	80	11	3	1	75	1	80	1.89e-28	97.1
Msa0212710	MtrunA17_Chr2g0312011	58.333	60	20	2	1	59	1	56	3.94e-14	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212710	AT2G32190.1	52.000	75	32	2	1	75	1	71	8.58e-20	75.5
Msa0212710	AT2G32210.1	52.000	75	32	2	1	75	1	71	1.53e-19	74.7
Msa0212710	AT2G32200.2	48.718	78	33	3	1	75	35	108	6.60e-16	66.6
Msa0212710	AT2G32200.1	48.718	78	33	3	1	75	1	74	9.91e-16	65.1
Msa0212710	AT3G22240.1	50.685	73	34	2	3	75	2	72	7.51e-11	52.8

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Find 31 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTAAAAGCAGATATCTA+GGG	0.606743	2_1:-54868274	None:intergenic
ACATATGGAGCTGTAGATAC+TGG	0.438751	2_1:-54868114	None:intergenic
ACTGGTGGTGGATATGATAC+TGG	0.355057	2_1:-54868096	None:intergenic
AGGGGTGATGGTTTCTGGAA+GGG	0.573021	2_1:+54868222	Msa0212710:CDS
ATGGGTTATCCTTCCAAAGA+TGG	0.529377	2_1:+54868153	Msa0212710:CDS
CAAACTACTAGCAGGGGTGA+TGG	0.586318	2_1:+54868210	Msa0212710:CDS
CAGGGGTGATGGTTTCTGGA+AGG	0.601686	2_1:+54868221	Msa0212710:CDS
CATCACCCCTGCTAGTAGTT+TGG	0.398219	2_1:-54868209	None:intergenic
CCAGACCAAACTACTAGCAG+GGG	0.657589	2_1:+54868204	Msa0212710:CDS
CCCCTGCTAGTAGTTTGGTC+TGG	0.475028	2_1:-54868204	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACTTCAACAATAAGCAAC+AGG	+	chr2_1:54868071-54868090	Msa0212710:CDS	30.0%
ACATATGGAGCTGTAGATAC+TGG	-	chr2_1:54868117-54868136	None:intergenic	40.0%
TATGGAGCTGTAGATACTGG+TGG	-	chr2_1:54868114-54868133	None:intergenic	45.0%
TTGGAAGGATAACCCATAGG+TGG	-	chr2_1:54868150-54868169	None:intergenic	45.0%
TTCCAGACCAAACTACTAGC+AGG	+	chr2_1:54868202-54868221	Msa0212710:CDS	45.0%
TCCAGACCAAACTACTAGCA+GGG	+	chr2_1:54868203-54868222	Msa0212710:CDS	45.0%
TGTAACTGCACCACCACCTA+TGG	+	chr2_1:54868134-54868153	Msa0212710:CDS	50.0%
GTAACTGCACCACCACCTAT+GGG	+	chr2_1:54868135-54868154	Msa0212710:CDS	50.0%
GAAGGATAACCCATAGGTGG+TGG	-	chr2_1:54868147-54868166	None:intergenic	50.0%
CCTTCAGTGCCATCTTTGGA+AGG	-	chr2_1:54868165-54868184	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	54868066	54868293	54868066	ID=Msa0212710;Name=Msa0212710
chr2_1	mRNA	54868066	54868293	54868066	ID=Msa0212710-mRNA-1;Parent=Msa0212710;Name=Msa0212710-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|75
chr2_1	exon	54868066	54868293	54868066	ID=Msa0212710-mRNA-1:exon:15212;Parent=Msa0212710-mRNA-1
chr2_1	CDS	54868066	54868293	54868066	ID=Msa0212710-mRNA-1:cds;Parent=Msa0212710-mRNA-1

Gene Sequence	>Msa0212710 ATGAGTAACTTCAACAATAAGCAACAGGCCCCAGTATCATATCCACCACCAGTATCTACAGCTCCATATGTAACTGCACCACCACCTATGGGTTATCCTTCCAAAGATGGCACTGAAGGGCACCCTCAACAAACGATTCCAGACCAAACTACTAGCAGGGGTGATGGTTTCTGGAAGGGATGTTGTGCTGCTATGTGTTGTTGTTGTGCCCTAGATATCTGCTTTTAA
Protein sequence	>Msa0212710 MSNFNNKQQAPVSYPPPVSTAPYVTAPPPMGYPSKDGTEGHPQQTIPDQTTSRGDGFWKGCCAAMCCCCALDICF*