AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351050 MtrunA17_Chr5g0394751 84.000 125 20 0 7 131 3 127 2.24e-73 224
Msa0351050 MtrunA17_Chr5g0394811 81.890 127 23 0 6 132 115 241 6.53e-72 224
Msa0351050 MtrunA17_Chr5g0394811 82.828 99 17 0 18 116 1 99 7.46e-54 177
Msa0351050 MtrunA17_Chr5g0394841 82.500 120 19 1 1 118 1 120 4.70e-69 213
Msa0351050 MtrunA17_Chr5g0394891 82.906 117 20 0 1 117 1 117 8.61e-69 213
Msa0351050 MtrunA17_Chr5g0394771 83.761 117 19 0 1 117 29 145 1.38e-68 213
Msa0351050 MtrunA17_Chr5g0394861 71.233 146 38 2 1 142 1 146 1.58e-67 209
Msa0351050 MtrunA17_Chr5g0395841 76.724 116 27 0 1 116 3 118 6.59e-62 195
Msa0351050 MtrunA17_Chr5g0394791 84.615 104 16 0 7 110 6 109 7.28e-62 189
Msa0351050 MtrunA17_Chr3g0144001 73.043 115 29 1 1 115 1 113 5.27e-58 185
Msa0351050 MtrunA17_Chr4g0070561 58.491 106 44 0 12 117 19 124 4.12e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351050 AT1G76690.1 80.870 115 22 0 1 115 3 117 2.20e-65 204
Msa0351050 AT1G76680.1 79.310 116 24 0 1 116 1 116 1.12e-64 202
Msa0351050 AT1G76680.2 79.310 116 24 0 1 116 1 116 2.25e-64 202
Msa0351050 AT1G17990.1 71.296 108 31 0 5 112 2 109 7.14e-55 174
Msa0351050 AT1G18020.1 71.296 108 31 0 5 112 2 109 7.14e-55 174
Msa0351050 AT1G09400.1 69.072 97 30 0 18 114 1 97 1.34e-48 160
Msa0351050 AT1G17990.2 63.889 108 31 1 5 112 2 101 2.46e-46 152
Msa0351050 AT2G06050.2 50.382 131 65 0 1 131 1 131 4.31e-40 139
Msa0351050 AT2G06050.1 50.382 131 65 0 1 131 1 131 4.31e-40 139
Msa0351050 AT2G06050.3 50.382 131 65 0 1 131 1 131 4.31e-40 139
Msa0351050 AT1G09400.2 75.676 37 9 0 78 114 2 38 1.68e-15 72.0

Find 235 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCATTGTGTCGCAGTTTC+TGG 0.069995 3_1:+16847400 Msa0351050:three_prime_UTR
GAATCTTATCCCACTATTTA+AGG 0.114571 3_1:+16845962 Msa0351050:three_prime_UTR
CATTATATTGTACAGGTTTA+AGG 0.144813 3_1:+16847325 Msa0351050:intron
CTTATGATCAGTTGTCTTAT+AGG 0.146960 3_1:-16846048 None:intergenic
TCACATTAATTTGATTTAAT+TGG 0.198344 3_1:+16842528 Msa0351050:five_prime_UTR
CCGCACTTGATTTCAGAAAT+AGG 0.199348 3_1:-16845443 None:intergenic
GCAAACCTCTTTGGCAAATC+TGG 0.210347 3_1:-16848909 None:intergenic
AAATGCATTGGGACTTTATA+TGG 0.214696 3_1:+16848662 Msa0351050:three_prime_UTR
CGCACTTGATTTCAGAAATA+GGG 0.215202 3_1:-16845442 None:intergenic
CTCCTCTTAACAAGTATAAT+AGG 0.228308 3_1:+16848940 Msa0351050:three_prime_UTR
AGGGCAGATCTTGTAGTTTA+TGG 0.251067 3_1:+16848867 Msa0351050:three_prime_UTR
AGAAGAAGTGTATTCGAAAA+TGG 0.263492 3_1:+16849271 Msa0351050:three_prime_UTR
ACACTTCTTCTCTTTAATTC+CGG 0.275429 3_1:-16849259 None:intergenic
TGATAAGAGGATGCTGTTTA+AGG 0.276758 3_1:+16847614 Msa0351050:three_prime_UTR
CTGAAGTCATTGACAATATC+AGG 0.283543 3_1:-16848230 None:intergenic
TATCAACCACAAAGCTTATA+TGG 0.288151 3_1:-16849231 None:intergenic
TTTAATTGGTGGTATCAAAA+TGG 0.293740 3_1:+16842542 Msa0351050:exon
CACTTCTTCTCTTTAATTCC+GGG 0.303086 3_1:-16849258 None:intergenic
TAGTCTAATTCCAACTTTAT+CGG 0.320112 3_1:-16848598 None:intergenic
ACGCCAGTTGCGGTATAAAT+TGG 0.324466 3_1:-16847652 None:intergenic
GCATTAAGTGCAAACCTCTT+TGG 0.332483 3_1:-16848918 None:intergenic
CAATTTGAGAGGGAGTTGTT+AGG 0.341045 3_1:-16842469 None:intergenic
TATAAGAAGACCACCTTTAG+AGG 0.341560 3_1:-16842826 None:intergenic
GGCTTTCAATGGCACTTTCA+TGG 0.346532 3_1:+16848794 Msa0351050:three_prime_UTR
CTTATATGGTATAAAATATC+AGG 0.352222 3_1:-16849217 None:intergenic
ATATAAAGTCCCAATGCATT+TGG 0.354102 3_1:-16848660 None:intergenic
ATCCAGACAGTCCAGGTATA+TGG 0.355749 3_1:+16842886 Msa0351050:CDS
GCATGAACAGCATCTACAAT+AGG 0.357406 3_1:-16842936 None:intergenic
CAGAGTTTCTTGACCTTACA+TGG 0.360212 3_1:+16847718 Msa0351050:three_prime_UTR
ATTTGACTATATACATTCAA+TGG 0.360719 3_1:+16847044 Msa0351050:three_prime_UTR
CTCATTGGCACAAGGCTGTA+AGG 0.367432 3_1:-16848768 None:intergenic
TTATGTCTTTGAGCATTTCA+TGG 0.369106 3_1:+16846007 Msa0351050:three_prime_UTR
TCCCTATTATACTTGTTAAG+AGG 0.369675 3_1:-16848942 None:intergenic
TCATCTGTCCCAAGCCTTCT+CGG 0.370065 3_1:-16848203 None:intergenic
CAATGGCACTTTCATGGTTG+CGG 0.371044 3_1:+16848800 Msa0351050:three_prime_UTR
TCAATGCTATAGCTGAAAAC+AGG 0.375838 3_1:+16848847 Msa0351050:three_prime_UTR
ATATAAGCTTTGTGGTTGAT+AGG 0.378658 3_1:+16849233 Msa0351050:three_prime_UTR
TGAAATGACAGCTTGGTATC+TGG 0.379528 3_1:-16846121 None:intergenic
TGATCCGGTTGTAGGTTATA+CGG 0.380846 3_1:+16848980 Msa0351050:three_prime_UTR
TATTCTTCGCATAAATGCTT+TGG 0.382593 3_1:+16847086 Msa0351050:three_prime_UTR
ACCTCTCTTAGACATCATTC+TGG 0.383756 3_1:-16845307 None:intergenic
TACATTTCTGATCCGGTTGT+AGG 0.387959 3_1:+16848972 Msa0351050:three_prime_UTR
TCAATCTGATCCTTAAATAG+TGG 0.390599 3_1:-16845972 None:intergenic
AATGGCACTTTCATGGTTGC+GGG 0.393208 3_1:+16848801 Msa0351050:three_prime_UTR
TTTATACCATATAAGCTTTG+TGG 0.396404 3_1:+16849225 Msa0351050:three_prime_UTR
TTTCAAGTTTAAGCCATTTG+TGG 0.400070 3_1:+16846139 Msa0351050:three_prime_UTR
TTGAATTTGCCCATCTTGTA+AGG 0.401075 3_1:-16842603 None:intergenic
TTAATGTATGCAGATGTTAT+AGG 0.401375 3_1:+16846272 Msa0351050:intron
GCAAGGTTGGACCGGTCATC+TGG 0.403115 3_1:-16846926 None:intergenic
CAGTCCATCGTCCTTGGTTA+AGG 0.404748 3_1:-16846171 None:intergenic
GTCCATATACCTGGACTGTC+TGG 0.405169 3_1:-16842888 None:intergenic
GTCTTTGAGCATTTCATGGT+GGG 0.405719 3_1:+16846011 Msa0351050:three_prime_UTR
TTCTCGCCACCGAGAAGGCT+TGG 0.405740 3_1:+16848194 Msa0351050:three_prime_UTR
TCCTCTTAACAAGTATAATA+GGG 0.406224 3_1:+16848941 Msa0351050:three_prime_UTR
GAATCGTTGTCGATTTCCTT+TGG 0.407517 3_1:+16848542 Msa0351050:three_prime_UTR
TCAAGGGTAATCACTGCTGC+TGG 0.407724 3_1:+16847182 Msa0351050:three_prime_UTR
AAAGAATATTGTACTTATTG+AGG 0.409340 3_1:-16848692 None:intergenic
TTCTGGGAAGCACGAAGGTC+TGG 0.409438 3_1:+16846084 Msa0351050:three_prime_UTR
CCATTGAAAGCCTTTCTCAT+TGG 0.410004 3_1:-16848783 None:intergenic
CGCATTGTGTCGCAGTTTCT+GGG 0.411117 3_1:+16847401 Msa0351050:three_prime_UTR
TGTTATAGTGATAAGTTTGA+AGG 0.418429 3_1:+16843885 Msa0351050:intron
AGGACCTTTGAGAGTAATAG+AGG 0.421466 3_1:-16842806 None:intergenic
ATGCCAATTTATACCGCAAC+TGG 0.424128 3_1:+16847649 Msa0351050:three_prime_UTR
GCAAATTCAATCTCTCTCAT+AGG 0.425449 3_1:+16842616 Msa0351050:CDS
AACATTCTACATTTCTGATC+CGG 0.427062 3_1:+16848965 Msa0351050:three_prime_UTR
TACCTCGGGATGGCTGTTCT+AGG 0.431216 3_1:-16847233 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.431994 3_1:+16848773 Msa0351050:three_prime_UTR
GAAGCAGTTGTAAATGAGAT+AGG 0.432088 3_1:+16848573 Msa0351050:three_prime_UTR
CATTAATTTGATTTAATTGG+TGG 0.432365 3_1:+16842531 Msa0351050:five_prime_UTR
TAACCTCAGTAGACTCAAAT+AGG 0.435296 3_1:-16846998 None:intergenic
TGGATGCTTCCCTCCTCTGC+AGG 0.436089 3_1:-16845530 None:intergenic
CTTTCTGCATATTCAGCAAA+TGG 0.438653 3_1:-16848624 None:intergenic
GATATCGGTGCTTGTCCATT+CGG 0.438814 3_1:-16848131 None:intergenic
ATTTCTTCAACTTGCACAGT+TGG 0.439002 3_1:-16846568 None:intergenic
TGTTGACCCGCGCTATCGCT+TGG 0.450778 3_1:-16844631 None:intergenic
GACTCTAATCCAAATGCATT+GGG 0.453689 3_1:+16848651 Msa0351050:three_prime_UTR
TCTGCAGGATTTGTTCGATC+AGG 0.453883 3_1:-16845515 None:intergenic
AATTTGAGAGGGAGTTGTTA+GGG 0.454555 3_1:-16842468 None:intergenic
CAGGTTTAAGGTTCACGTCC+AGG 0.457021 3_1:+16847337 Msa0351050:intron
CCAGGATTTGCTAGATGGAA+TGG 0.458892 3_1:+16847433 Msa0351050:three_prime_UTR
ATGCACACTTTGAACATGTC+TGG 0.459508 3_1:-16847160 None:intergenic
AGCTTGTAGTTCTGAACATC+CGG 0.461092 3_1:-16846771 None:intergenic
GAAGGTTCCACTTCCAACCT+TGG 0.461724 3_1:-16849047 None:intergenic
AAGAATATTGTACTTATTGA+GGG 0.462924 3_1:-16848691 None:intergenic
TTTCCGTCTGCAGGAGTCAT+GGG 0.463846 3_1:+16846699 Msa0351050:intron
ACCTTAACTTTCTTTGATGC+GGG 0.464340 3_1:-16843939 None:intergenic
CTTGCATTTGTCACAATACA+TGG 0.464828 3_1:-16847207 None:intergenic
TTTCTTGACCTTACATGGCC+TGG 0.466629 3_1:+16847723 Msa0351050:three_prime_UTR
TTTGACTATATACATTCAAT+GGG 0.472933 3_1:+16847045 Msa0351050:three_prime_UTR
CCATTCCATCTAGCAAATCC+TGG 0.476787 3_1:-16847433 None:intergenic
GAGATAGGAGCCGATAAAGT+TGG 0.478784 3_1:+16848588 Msa0351050:three_prime_UTR
AATGTCCAGGATTTGCTAGA+TGG 0.479433 3_1:+16847428 Msa0351050:three_prime_UTR
GTCGGATACACCAGTAGCTT+CGG 0.479603 3_1:-16842850 None:intergenic
ACCAAGCAGTCCATCGTCCT+TGG 0.479863 3_1:-16846177 None:intergenic
TCCCGCATCAAAGAAAGTTA+AGG 0.482962 3_1:+16843938 Msa0351050:CDS
TGACAGCTTGGTATCTGGCC+TGG 0.485225 3_1:-16846116 None:intergenic
CTCACTAGAATAAGATCCTA+TGG 0.486036 3_1:+16842759 Msa0351050:CDS
TCTTCTTACACCTTACAAGA+TGG 0.486533 3_1:+16842593 Msa0351050:CDS
TCTCGCCACCGAGAAGGCTT+GGG 0.486835 3_1:+16848195 Msa0351050:three_prime_UTR
CAAGGGTAATCACTGCTGCT+GGG 0.487027 3_1:+16847183 Msa0351050:three_prime_UTR
CATTACAGCCAGGCCATGTA+AGG 0.488828 3_1:-16847731 None:intergenic
CGAATCCAGATTTGCCAAAG+AGG 0.491902 3_1:+16848904 Msa0351050:three_prime_UTR
ATTGCTTGTGAGTGACTTGT+CGG 0.493116 3_1:-16848159 None:intergenic
CTTTCCGTCTGCAGGAGTCA+TGG 0.494135 3_1:+16846698 Msa0351050:intron
TACCTTAACTTTCTTTGATG+CGG 0.496167 3_1:-16843940 None:intergenic
AGTTGGAGTATCATCACAAC+AGG 0.501992 3_1:-16846551 None:intergenic
TCGGACAGGGTCAGCAAGGT+TGG 0.502151 3_1:-16846939 None:intergenic
CTTCTTATAGCCGAAGCTAC+TGG 0.505350 3_1:+16842840 Msa0351050:CDS
AGACTCTAATCCAAATGCAT+TGG 0.510548 3_1:+16848650 Msa0351050:three_prime_UTR
TATCATTTGCAAGATGTGGC+AGG 0.511781 3_1:+16844672 Msa0351050:three_prime_UTR
TAAGGTGTAAGAAGAGGAAT+GGG 0.514396 3_1:-16842585 None:intergenic
ACCAAGGACGATGGACTGCT+TGG 0.516504 3_1:+16846176 Msa0351050:three_prime_UTR
CAGGATTTGCTAGATGGAAT+GGG 0.517196 3_1:+16847434 Msa0351050:three_prime_UTR
AAGGAGAGAATGTCCACAAA+TGG 0.518207 3_1:-16846152 None:intergenic
CAGGGTCAGCAAGGTTGGAC+CGG 0.518997 3_1:-16846934 None:intergenic
TTTGAAGCAAATCCTCGGAC+AGG 0.519952 3_1:-16846953 None:intergenic
GATCAGTTGTCTTATAGGAA+TGG 0.520815 3_1:-16846043 None:intergenic
TATAGGTCACGTAGTCGAAA+AGG 0.522469 3_1:+16846289 Msa0351050:three_prime_UTR
AAGGTCGAGTGATCCACTTA+TGG 0.524963 3_1:+16845486 Msa0351050:three_prime_UTR
GATCAGGAACACTCCATAAG+TGG 0.525607 3_1:-16845499 None:intergenic
TTGTCCTCTATTACTCTCAA+AGG 0.525613 3_1:+16842802 Msa0351050:CDS
TCATTGGCACAAGGCTGTAA+GGG 0.525679 3_1:-16848767 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.528089 3_1:+16848260 Msa0351050:three_prime_UTR
ACATTTAGTTCAGTTGGGTA+CGG 0.528432 3_1:-16847585 None:intergenic
GTAAGGTGTAAGAAGAGGAA+TGG 0.528759 3_1:-16842586 None:intergenic
GTAGCATCCAAGGTTGGAAG+TGG 0.529512 3_1:+16849040 Msa0351050:three_prime_UTR
AACAGATCCAAGCGATAGCG+CGG 0.530014 3_1:+16844624 Msa0351050:exon
TACTCTCAAAGGTCCTCTAA+AGG 0.530036 3_1:+16842813 Msa0351050:CDS
TCTATCTCACATGTCCTAGC+AGG 0.530251 3_1:-16847116 None:intergenic
CTTTCATGAATTGTTCAAGT+AGG 0.530510 3_1:-16848476 None:intergenic
AATATGCAATTCAATTTGAG+AGG 0.530530 3_1:-16842480 None:intergenic
AGGGGTCAGCTTTGAAGCCA+TGG 0.532020 3_1:-16845423 None:intergenic
GACTTGTCGGTAGAAGATAT+CGG 0.533594 3_1:-16848146 None:intergenic
GTCGAAATCCATGGAGCTCA+TGG 0.534699 3_1:+16848450 Msa0351050:three_prime_UTR
TTTGATGGTGTCGAAATCCA+TGG 0.539312 3_1:+16848441 Msa0351050:three_prime_UTR
CTTCTTACACCTTACAAGAT+GGG 0.542433 3_1:+16842594 Msa0351050:CDS
TTCATACTAGCTTATCGGCT+AGG 0.542451 3_1:+16849162 Msa0351050:three_prime_UTR
ATGATGTACTGTAGCATCCA+AGG 0.542555 3_1:+16849030 Msa0351050:three_prime_UTR
CAATCTGATCCTTAAATAGT+GGG 0.544018 3_1:-16845971 None:intergenic
TGCTCTTTAGTCCATATACC+TGG 0.544456 3_1:-16842897 None:intergenic
TGTGAGATAGAGACTGATCT+CGG 0.548575 3_1:+16847128 Msa0351050:three_prime_UTR
CTTTGTGGTTGATAGGATCC+CGG 0.552824 3_1:+16849240 Msa0351050:three_prime_UTR
TGGATACCCTTGAGCTGTGT+CGG 0.553060 3_1:-16842868 None:intergenic
AGCCGGTGTTATCTATAACC+TGG 0.553684 3_1:-16847355 None:intergenic
ATGTTCAAAGTGTGCATCAA+GGG 0.555589 3_1:+16847166 Msa0351050:three_prime_UTR
TTGAGTTTGAAGCAAATCCT+CGG 0.556006 3_1:-16846958 None:intergenic
GGGGTGTCAAATGCGTTCTA+CGG 0.558094 3_1:+16846720 Msa0351050:three_prime_UTR
GGATCAGATTGACGAGGGGT+CGG 0.558136 3_1:+16845983 Msa0351050:three_prime_UTR
GCTTTGGCACTGTTCCTGCT+AGG 0.558441 3_1:+16847102 Msa0351050:three_prime_UTR
GTTGCTGAATGCCGATCTAC+CGG 0.558688 3_1:+16846752 Msa0351050:three_prime_UTR
TTATTATCATTTGCAAGATG+TGG 0.559771 3_1:+16844668 Msa0351050:three_prime_UTR
GTAGATGCTGTTCATGCTAA+AGG 0.560685 3_1:+16842942 Msa0351050:CDS
CCAATGAGAAAGGCTTTCAA+TGG 0.561406 3_1:+16848783 Msa0351050:three_prime_UTR
CAAAACAAACACAGTTGAGC+CGG 0.561628 3_1:-16847372 None:intergenic
TCTTAGACATCATTCTGGAA+TGG 0.562133 3_1:-16845302 None:intergenic
AAGCCTTTCTCATTGGCACA+AGG 0.563142 3_1:-16848776 None:intergenic
CATGCTGCTGCTAGATGAGA+AGG 0.564393 3_1:+16845553 Msa0351050:three_prime_UTR
CAAGGGTATCCAGACAGTCC+AGG 0.564732 3_1:+16842879 Msa0351050:CDS
AGGATTTGCTTCAAACTCAA+AGG 0.564850 3_1:+16846961 Msa0351050:three_prime_UTR
CATGTTCAAAGTGTGCATCA+AGG 0.565347 3_1:+16847165 Msa0351050:three_prime_UTR
TTCCGTCTGCAGGAGTCATG+GGG 0.566388 3_1:+16846700 Msa0351050:intron
TTAAACTTGAAATGACAGCT+TGG 0.568213 3_1:-16846128 None:intergenic
GTTCTGAACATCCGGTAGAT+CGG 0.570774 3_1:-16846763 None:intergenic
TACATTCAATGGGTTCATGT+AGG 0.571268 3_1:+16847055 Msa0351050:three_prime_UTR
TCGAACAAATCCTGCAGAGG+AGG 0.571418 3_1:+16845520 Msa0351050:three_prime_UTR
AAGGTTGAGTTCAATGTGAA+AGG 0.573601 3_1:+16845467 Msa0351050:three_prime_UTR
TAGAGGACAACATGTGGTTG+AGG 0.573654 3_1:-16842789 None:intergenic
GGTGTATCCGACACAGCTCA+AGG 0.574972 3_1:+16842861 Msa0351050:CDS
GTTTCTGGGACAGAATGTCC+AGG 0.576224 3_1:+16847415 Msa0351050:three_prime_UTR
TAGTCCGTATAACCTACAAC+CGG 0.576852 3_1:-16848984 None:intergenic
CAATATTCTTTACTGTCACA+TGG 0.576936 3_1:+16848704 Msa0351050:three_prime_UTR
AGCTTCAATAGCATTTCTTG+CGG 0.576970 3_1:-16848258 None:intergenic
AAGGTCTGGAAGATCACTCC+AGG 0.577509 3_1:+16846098 Msa0351050:three_prime_UTR
AGTGATGGATCTTACTCTTG+AGG 0.578580 3_1:+16846352 Msa0351050:three_prime_UTR
CGAACAAATCCTGCAGAGGA+GGG 0.579407 3_1:+16845521 Msa0351050:three_prime_UTR
TTCTGAAATCAAGTGCGGGA+AGG 0.583409 3_1:+16845448 Msa0351050:three_prime_UTR
CTATTTCTGAAATCAAGTGC+GGG 0.585441 3_1:+16845444 Msa0351050:three_prime_UTR
GGCACTTTCATGGTTGCGGG+AGG 0.587792 3_1:+16848804 Msa0351050:three_prime_UTR
AATGACAGAACAGATGAATA+CGG 0.588235 3_1:+16848507 Msa0351050:three_prime_UTR
ATGAAGAATAGAAACTCTTG+TGG 0.590149 3_1:-16845264 None:intergenic
GAAATCGACAACGATTCTCA+AGG 0.593087 3_1:-16848536 None:intergenic
AACCTTGCTGACCCTGTCCG+AGG 0.594319 3_1:+16846941 Msa0351050:three_prime_UTR
TGTCTTTGAGCATTTCATGG+TGG 0.595772 3_1:+16846010 Msa0351050:three_prime_UTR
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 3_1:-16848458 None:intergenic
ATCCTCGGACAGGGTCAGCA+AGG 0.599914 3_1:-16846943 None:intergenic
CAAGTTGTCAGCCAGATGAC+CGG 0.600440 3_1:+16846915 Msa0351050:three_prime_UTR
GGAGGCTATGACAGACAAGA+CGG 0.604358 3_1:+16848822 Msa0351050:three_prime_UTR
GCACTTGATTTCAGAAATAG+GGG 0.604805 3_1:-16845441 None:intergenic
CCGCAACTGGCGTAGCTACA+CGG 0.606321 3_1:+16847662 Msa0351050:three_prime_UTR
ACTGCTTCAACAACTTCCAA+AGG 0.607160 3_1:-16848558 None:intergenic
TCTCATCTAGCAGCAGCATG+TGG 0.607170 3_1:-16845550 None:intergenic
AGTCGAAAAGGATGTGCTGA+AGG 0.607707 3_1:+16846301 Msa0351050:three_prime_UTR
TTTAAGGATCAGATTGACGA+GGG 0.608815 3_1:+16845978 Msa0351050:three_prime_UTR
TAATCTAGCTTACCTCGGGA+TGG 0.612351 3_1:-16847243 None:intergenic
AACTTGTGTTAGAGCAACGT+TGG 0.612794 3_1:-16846898 None:intergenic
TAGGATCTTATTCTAGTGAG+TGG 0.614903 3_1:-16842756 None:intergenic
GTGAGATAGAGACTGATCTC+GGG 0.615738 3_1:+16847129 Msa0351050:three_prime_UTR
GAGGCTATGACAGACAAGAC+GGG 0.616560 3_1:+16848823 Msa0351050:three_prime_UTR
TTGAAGCAAATCCTCGGACA+GGG 0.616655 3_1:-16846952 None:intergenic
CAATGCTATAGCTGAAAACA+GGG 0.617928 3_1:+16848848 Msa0351050:three_prime_UTR
ATCTTGTAAGGTGTAAGAAG+AGG 0.620167 3_1:-16842591 None:intergenic
TGTCAGCATACACATCCCAC+AGG 0.621608 3_1:-16846490 None:intergenic
ATATGCAATTCAATTTGAGA+GGG 0.622130 3_1:-16842479 None:intergenic
TGGTTGAGGAACATTGCCAT+AGG 0.622865 3_1:-16842775 None:intergenic
CCGTGTAGCTACGCCAGTTG+CGG 0.625054 3_1:-16847662 None:intergenic
TGTACTGTAGCATCCAAGGT+TGG 0.631442 3_1:+16849034 Msa0351050:three_prime_UTR
AAATCGACAACGATTCTCAA+GGG 0.633730 3_1:-16848535 None:intergenic
TTTGCTGAATATGCAGAAAG+CGG 0.633878 3_1:+16848627 Msa0351050:three_prime_UTR
AAGGGTAATCACTGCTGCTG+GGG 0.634459 3_1:+16847184 Msa0351050:three_prime_UTR
TCTCAAAGGTCCTCTAAAGG+TGG 0.638482 3_1:+16842816 Msa0351050:CDS
CTAAAGAGCAAGTTGAGGCG+TGG 0.641191 3_1:+16842910 Msa0351050:CDS
ACAGATCCAAGCGATAGCGC+GGG 0.642224 3_1:+16844625 Msa0351050:exon
CCTATTTCTGAAATCAAGTG+CGG 0.642663 3_1:+16845443 Msa0351050:three_prime_UTR
CTCTCCTTAACCAAGGACGA+TGG 0.647005 3_1:+16846167 Msa0351050:three_prime_UTR
CAGATGAGTCATGTGAATCG+AGG 0.653858 3_1:-16846526 None:intergenic
TGACCTATTTGAGTCTACTG+AGG 0.655358 3_1:+16846995 Msa0351050:three_prime_UTR
TGATCGAACAAATCCTGCAG+AGG 0.656044 3_1:+16845517 Msa0351050:three_prime_UTR
TGCCTAGAACAGCCATCCCG+AGG 0.659823 3_1:+16847231 Msa0351050:three_prime_UTR
GTGTATCCGACACAGCTCAA+GGG 0.660265 3_1:+16842862 Msa0351050:CDS
AGATAGAGACTGATCTCGGG+TGG 0.663227 3_1:+16847132 Msa0351050:three_prime_UTR
TCCAGAATGATGTCTAAGAG+AGG 0.664238 3_1:+16845306 Msa0351050:three_prime_UTR
ATAGATTGCATTGTACCCTG+TGG 0.664881 3_1:+16846474 Msa0351050:three_prime_UTR
TAGATTGCATTGTACCCTGT+GGG 0.672327 3_1:+16846475 Msa0351050:three_prime_UTR
ATTTAAGGATCAGATTGACG+AGG 0.679200 3_1:+16845977 Msa0351050:three_prime_UTR
GTCAGCATACACATCCCACA+GGG 0.680730 3_1:-16846489 None:intergenic
GGACATTCTCTCCTTAACCA+AGG 0.683711 3_1:+16846160 Msa0351050:three_prime_UTR
TATTCTTTACTGTCACATGG+TGG 0.684787 3_1:+16848707 Msa0351050:three_prime_UTR
ATGGACTAAAGAGCAAGTTG+AGG 0.687634 3_1:+16842905 Msa0351050:CDS
GAGTAATAGAGGACAACATG+TGG 0.696474 3_1:-16842795 None:intergenic
GACAGAACAGATGAATACGG+TGG 0.702185 3_1:+16848510 Msa0351050:three_prime_UTR
TCTGTCCCAAGCCTTCTCGG+TGG 0.708391 3_1:-16848200 None:intergenic
AAAGAAACTGACACATGCTG+AGG 0.708448 3_1:+16847687 Msa0351050:three_prime_UTR
GTCCAGGTTATAGATAACAC+CGG 0.709843 3_1:+16847353 Msa0351050:three_prime_UTR
TCCGTCTGCAGGAGTCATGG+GGG 0.710732 3_1:+16846701 Msa0351050:intron
TTAAGGATCAGATTGACGAG+GGG 0.714116 3_1:+16845979 Msa0351050:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCCTTAATATATAAA+TGG + chr3_1:16843021-16843040 Msa0351050:intron 10.0%
!!! TATTTTCCATTTATATATTA+AGG - chr3_1:16843030-16843049 None:intergenic 10.0%
!! ATATAATAATCTTTGTTAAA+TGG - chr3_1:16844487-16844506 None:intergenic 10.0%
!! GTAATAATACTAAAAAATAA+CGG - chr3_1:16848000-16848019 None:intergenic 10.0%
!! AAAAAACTAATTAAATTTGA+AGG - chr3_1:16849068-16849087 None:intergenic 10.0%
!!! TCACATTAATTTGATTTAAT+TGG + chr3_1:16842528-16842547 Msa0351050:five_prime_UTR 15.0%
!!! ATTGAAATTGAAAGTATAAT+AGG - chr3_1:16842644-16842663 None:intergenic 15.0%
!! TATGAATCAATTCTTAAAAT+TGG + chr3_1:16843504-16843523 Msa0351050:intron 15.0%
!!! TTGTTTCATTTATTATTTTG+AGG + chr3_1:16843859-16843878 Msa0351050:intron 15.0%
!!! AAGATAATTAAGTTTTCTTT+TGG + chr3_1:16844186-16844205 Msa0351050:intron 15.0%
!!! AGATAATTAAGTTTTCTTTT+GGG + chr3_1:16844187-16844206 Msa0351050:intron 15.0%
!! AAATTATTAGAAGAAAAAGA+AGG - chr3_1:16845096-16845115 None:intergenic 15.0%
!!! TTTCGAAAATTAAACATTTT+CGG - chr3_1:16845825-16845844 None:intergenic 15.0%
!! ATTATATCAATTACAATAGA+AGG + chr3_1:16847262-16847281 Msa0351050:intron 15.0%
!!! TAATTAATTACTTTGTTGTT+GGG - chr3_1:16847513-16847532 None:intergenic 15.0%
!!! ATAATTAATTACTTTGTTGT+TGG - chr3_1:16847514-16847533 None:intergenic 15.0%
!!! CATTAATTTGATTTAATTGG+TGG + chr3_1:16842531-16842550 Msa0351050:five_prime_UTR 20.0%
!!! AATTTGGTTTGTAGTAATTT+TGG + chr3_1:16843804-16843823 Msa0351050:intron 20.0%
!!! AAATATATGAACCTTTTGTT+TGG + chr3_1:16843830-16843849 Msa0351050:intron 20.0%
!!! AATATATGAACCTTTTGTTT+GGG + chr3_1:16843831-16843850 Msa0351050:intron 20.0%
!! GGTAATGATATATTAATGAT+TGG + chr3_1:16843959-16843978 Msa0351050:intron 20.0%
!!! GAGATGTTGATAATTAAATT+TGG + chr3_1:16844425-16844444 Msa0351050:intron 20.0%
!!! ATCTTATTTTTTCCTTTTTC+AGG + chr3_1:16844541-16844560 Msa0351050:intron 20.0%
!! TGTATAAGAAAATCTAATGA+TGG + chr3_1:16844739-16844758 Msa0351050:intron 20.0%
!!! CATACTTTAAGTGTTTTTTT+AGG - chr3_1:16845150-16845169 None:intergenic 20.0%
!! TACATTATTAAACCAGATTA+AGG - chr3_1:16845384-16845403 None:intergenic 20.0%
!!! GTAAGTATAATTTTTTTTGC+TGG + chr3_1:16846382-16846401 Msa0351050:intron 20.0%
!!! GTGCATTTTTTTTATCTATA+TGG + chr3_1:16846645-16846664 Msa0351050:intron 20.0%
!!! TTACCTTTTAAGAATTCTAA+TGG + chr3_1:16846671-16846690 Msa0351050:intron 20.0%
!! TTACCATTAGAATTCTTAAA+AGG - chr3_1:16846677-16846696 None:intergenic 20.0%
!!! TTGATTTTACCATCATATTT+AGG + chr3_1:16846865-16846884 Msa0351050:intron 20.0%
!! ATTTGACTATATACATTCAA+TGG + chr3_1:16847044-16847063 Msa0351050:three_prime_UTR 20.0%
!! TTTGACTATATACATTCAAT+GGG + chr3_1:16847045-16847064 Msa0351050:three_prime_UTR 20.0%
!!! TAAATGTTTTTGTTGATAAG+AGG + chr3_1:16847601-16847620 Msa0351050:three_prime_UTR 20.0%
!!! TACTAAAAAATAACGGATTT+GGG - chr3_1:16847993-16848012 None:intergenic 20.0%
!!! ATACTAAAAAATAACGGATT+TGG - chr3_1:16847994-16848013 None:intergenic 20.0%
!! TAGTATTATTACTACTACTA+AGG + chr3_1:16848008-16848027 Msa0351050:intron 20.0%
!! AGTATTATTACTACTACTAA+GGG + chr3_1:16848009-16848028 Msa0351050:intron 20.0%
!! AAGAATATTGTACTTATTGA+GGG - chr3_1:16848694-16848713 None:intergenic 20.0%
!! AAAGAATATTGTACTTATTG+AGG - chr3_1:16848695-16848714 None:intergenic 20.0%
!!! TTTTTTCTTCATTCAAGAAA+TGG - chr3_1:16849011-16849030 None:intergenic 20.0%
!!! TTTTATTCATACTAGCTTAT+CGG + chr3_1:16849157-16849176 Msa0351050:three_prime_UTR 20.0%
!! CTTATATGGTATAAAATATC+AGG - chr3_1:16849220-16849239 None:intergenic 20.0%
! ATATGCAATTCAATTTGAGA+GGG - chr3_1:16842482-16842501 None:intergenic 25.0%
! AATATGCAATTCAATTTGAG+AGG - chr3_1:16842483-16842502 None:intergenic 25.0%
!! TTTAATTGGTGGTATCAAAA+TGG + chr3_1:16842542-16842561 Msa0351050:exon 25.0%
!! TTTTGTACTGAATTAATGCT+TGG + chr3_1:16843094-16843113 Msa0351050:intron 25.0%
! AGAACAGAAAATTGAACAAT+TGG + chr3_1:16843245-16843264 Msa0351050:intron 25.0%
! AAATTGAACAATTGGAGTAA+AGG + chr3_1:16843253-16843272 Msa0351050:intron 25.0%
! AATTGAACAATTGGAGTAAA+GGG + chr3_1:16843254-16843273 Msa0351050:intron 25.0%
!! GAGAAAATTGAAAATGGATT+GGG - chr3_1:16843394-16843413 None:intergenic 25.0%
! ATTCTTAAAATTGGAGTAAC+TGG + chr3_1:16843513-16843532 Msa0351050:intron 25.0%
!!! TTTATTCTATTTTGAAGTCC+TGG + chr3_1:16843662-16843681 Msa0351050:intron 25.0%
!!! CGTTTTGTTATAGTTGAATT+TGG + chr3_1:16843788-16843807 Msa0351050:intron 25.0%
! TGTTATAGTGATAAGTTTGA+AGG + chr3_1:16843885-16843904 Msa0351050:intron 25.0%
! ACATAGATGAATAAATTCAG+TGG + chr3_1:16844004-16844023 Msa0351050:intron 25.0%
! AATAGAGAAATAAATCGACA+TGG + chr3_1:16844140-16844159 Msa0351050:intron 25.0%
!!! TTTGTTTTTGAGCAAACTAT+TGG + chr3_1:16844332-16844351 Msa0351050:intron 25.0%
!! GAATAGATAATTAGAGCATT+TGG - chr3_1:16844511-16844530 None:intergenic 25.0%
!!! CTTTTTCAGGTTTTCTATAT+GGG + chr3_1:16844554-16844573 Msa0351050:intron 25.0%
! TTATTATCATTTGCAAGATG+TGG + chr3_1:16844668-16844687 Msa0351050:three_prime_UTR 25.0%
! TAAAGATCCCTATAAATACA+GGG + chr3_1:16845221-16845240 Msa0351050:intron 25.0%
!!! AAATTTTGATAGCATACACA+TGG - chr3_1:16845337-16845356 None:intergenic 25.0%
!! TGTAATTAATCTTTTAGCCA+TGG + chr3_1:16845406-16845425 Msa0351050:intron 25.0%
! ATTGCAGAAAATACTATCAT+GGG - chr3_1:16845640-16845659 None:intergenic 25.0%
! TATTGCAGAAAATACTATCA+TGG - chr3_1:16845641-16845660 None:intergenic 25.0%
!!! TATTTTTTACTGCTGTTTGT+TGG + chr3_1:16845659-16845678 Msa0351050:intron 25.0%
!! AACTCTAGAAGATTATAGAT+AGG - chr3_1:16845685-16845704 None:intergenic 25.0%
! GTATTGTAACTATTGTCATA+AGG + chr3_1:16845708-16845727 Msa0351050:intron 25.0%
!! TAAGTATAAGCTGAATTTTC+TGG + chr3_1:16846067-16846086 Msa0351050:three_prime_UTR 25.0%
!! AAGTATAAGCTGAATTTTCT+GGG + chr3_1:16846068-16846087 Msa0351050:three_prime_UTR 25.0%
! TTAATGTATGCAGATGTTAT+AGG + chr3_1:16846272-16846291 Msa0351050:intron 25.0%
! AGACTGAAAAAAATGGAAAA+AGG + chr3_1:16846324-16846343 Msa0351050:three_prime_UTR 25.0%
!!! TGCAAGTTGAAGAAATTTTT+CGG + chr3_1:16846575-16846594 Msa0351050:three_prime_UTR 25.0%
! ATATGATGGTAAAATCAAGA+CGG - chr3_1:16846863-16846882 None:intergenic 25.0%
! ATATCAATTACAATAGAAGG+CGG + chr3_1:16847265-16847284 Msa0351050:intron 25.0%
! ATATTCGCATTATATTGTAC+AGG + chr3_1:16847318-16847337 Msa0351050:intron 25.0%
! CATTATATTGTACAGGTTTA+AGG + chr3_1:16847325-16847344 Msa0351050:intron 25.0%
!! CAAAAACATTTAGTTCAGTT+GGG - chr3_1:16847593-16847612 None:intergenic 25.0%
!! ACAAAAACATTTAGTTCAGT+TGG - chr3_1:16847594-16847613 None:intergenic 25.0%
! CAAAACTATCCAATCAATAT+TGG - chr3_1:16847926-16847945 None:intergenic 25.0%
! GTATTATTACTACTACTAAG+GGG + chr3_1:16848010-16848029 Msa0351050:intron 25.0%
! AAAACCTGTTGAGAATAAAA+TGG - chr3_1:16848108-16848127 None:intergenic 25.0%
!!! TACTGATATTTTTCAGAAAC+AGG + chr3_1:16848342-16848361 Msa0351050:intron 25.0%
! TAGTCTAATTCCAACTTTAT+CGG - chr3_1:16848601-16848620 None:intergenic 25.0%
! TCCTCTTAACAAGTATAATA+GGG + chr3_1:16848941-16848960 Msa0351050:three_prime_UTR 25.0%
! ACTAAAAAAACAAATGTGCA+AGG - chr3_1:16849093-16849112 None:intergenic 25.0%
! TTTATACCATATAAGCTTTG+TGG + chr3_1:16849225-16849244 Msa0351050:three_prime_UTR 25.0%
! CTACATTCTTTTGTCAGATT+TGG + chr3_1:16842967-16842986 Msa0351050:CDS 30.0%
! GTTGGAAGATTTTCAAATTC+AGG + chr3_1:16842993-16843012 Msa0351050:CDS 30.0%
! CAAAATGTATGAGTTTGCTT+AGG - chr3_1:16843079-16843098 None:intergenic 30.0%
!!! AATCCTAGGGTTTTTTACTA+TGG + chr3_1:16843123-16843142 Msa0351050:intron 30.0%
TTACCATAGTAAAAAACCCT+AGG - chr3_1:16843129-16843148 None:intergenic 30.0%
GCAAAATACAATTAGCCAAT+AGG + chr3_1:16843205-16843224 Msa0351050:intron 30.0%
AATTAGCCAATAGGAGTAAA+GGG + chr3_1:16843214-16843233 Msa0351050:intron 30.0%
TGAAAATGAATTGAGAGAAG+AGG - chr3_1:16843317-16843336 None:intergenic 30.0%
!! AAAATTGAAAATGGATTGGG+AGG - chr3_1:16843391-16843410 None:intergenic 30.0%
GGAGAAAATTGAAAATGGAT+TGG - chr3_1:16843395-16843414 None:intergenic 30.0%
ATTGGAGATTGAAACTGTAT+GGG - chr3_1:16843439-16843458 None:intergenic 30.0%
AATTGGAGATTGAAACTGTA+TGG - chr3_1:16843440-16843459 None:intergenic 30.0%
GTTTGATTGTGAGCTAAAAT+TGG - chr3_1:16843457-16843476 None:intergenic 30.0%
GCAAAGGAATTAGAGATAAA+TGG - chr3_1:16843561-16843580 None:intergenic 30.0%
TTTATCTCTAATTCCTTTGC+TGG + chr3_1:16843561-16843580 Msa0351050:intron 30.0%
TTATCTCTAATTCCTTTGCT+GGG + chr3_1:16843562-16843581 Msa0351050:intron 30.0%
AACAAAACAACCCAAACAAA+AGG - chr3_1:16843844-16843863 None:intergenic 30.0%
TACCTTAACTTTCTTTGATG+CGG - chr3_1:16843943-16843962 None:intergenic 30.0%
!!! TTTGCTTGCTGTTGAAATTT+TGG + chr3_1:16844043-16844062 Msa0351050:intron 30.0%
TATACTCAAAGTATGTGTGT+AGG - chr3_1:16844105-16844124 None:intergenic 30.0%
CGACATGGTAATAAAAGATT+AGG + chr3_1:16844155-16844174 Msa0351050:intron 30.0%
CAACATATGCAAGAAATGTA+CGG + chr3_1:16844256-16844275 Msa0351050:intron 30.0%
AGAATTTGTGGCTAAACTAT+TGG + chr3_1:16844302-16844321 Msa0351050:intron 30.0%
AGCAAACTATTGGATTGTTA+AGG + chr3_1:16844342-16844361 Msa0351050:intron 30.0%
ACAAAAAGTAAAGCAATGTG+AGG - chr3_1:16844457-16844476 None:intergenic 30.0%
CCATATAGAAAACCTGAAAA+AGG - chr3_1:16844556-16844575 None:intergenic 30.0%
!!! CCTTTTTCAGGTTTTCTATA+TGG + chr3_1:16844553-16844572 Msa0351050:intron 30.0%
GGTTATAGAAACTATGATGA+TGG + chr3_1:16844760-16844779 Msa0351050:intron 30.0%
TGTATTAGTCCAACTACTTA+AGG - chr3_1:16844895-16844914 None:intergenic 30.0%
! TTATGGTCTTTTGCATGTTT+TGG + chr3_1:16844950-16844969 Msa0351050:intron 30.0%
!! TCTTTTGCATGTTTTGGATT+TGG + chr3_1:16844956-16844975 Msa0351050:intron 30.0%
!! CATGTTTTGGATTTGGATTT+AGG + chr3_1:16844963-16844982 Msa0351050:intron 30.0%
CTTAAAGTATGATATCCTCT+TGG + chr3_1:16845159-16845178 Msa0351050:intron 30.0%
CTAAAGATCCCTATAAATAC+AGG + chr3_1:16845220-16845239 Msa0351050:intron 30.0%
ATGAAGAATAGAAACTCTTG+TGG - chr3_1:16845267-16845286 None:intergenic 30.0%
!! CGTTTGATTTTACCTTAATC+TGG + chr3_1:16845369-16845388 Msa0351050:intron 30.0%
GAATCTTATCCCACTATTTA+AGG + chr3_1:16845962-16845981 Msa0351050:three_prime_UTR 30.0%
CAATCTGATCCTTAAATAGT+GGG - chr3_1:16845974-16845993 None:intergenic 30.0%
TCAATCTGATCCTTAAATAG+TGG - chr3_1:16845975-16845994 None:intergenic 30.0%
TTATGTCTTTGAGCATTTCA+TGG + chr3_1:16846007-16846026 Msa0351050:three_prime_UTR 30.0%
CTTATGATCAGTTGTCTTAT+AGG - chr3_1:16846051-16846070 None:intergenic 30.0%
TTAAACTTGAAATGACAGCT+TGG - chr3_1:16846131-16846150 None:intergenic 30.0%
!! TTTCAAGTTTAAGCCATTTG+TGG + chr3_1:16846139-16846158 Msa0351050:three_prime_UTR 30.0%
AAGACGGTTATATACACAAA+TGG - chr3_1:16846847-16846866 None:intergenic 30.0%
TATTCTTCGCATAAATGCTT+TGG + chr3_1:16847086-16847105 Msa0351050:three_prime_UTR 30.0%
! TGATATAATCTAGCTTACCT+CGG - chr3_1:16847251-16847270 None:intergenic 30.0%
CAAAAAGGGAAATAACATGA+TGG - chr3_1:16847291-16847310 None:intergenic 30.0%
CGAATATTGAGTGACAAAAA+GGG - chr3_1:16847305-16847324 None:intergenic 30.0%
AAATTCTTGAGCTTGAAATC+TGG + chr3_1:16847895-16847914 Msa0351050:intron 30.0%
ACTATCCAATCAATATTGGA+CGG - chr3_1:16847922-16847941 None:intergenic 30.0%
TATTGAAGCTGGTAAATTTG+TGG + chr3_1:16848271-16848290 Msa0351050:intron 30.0%
! GATTGAAGCACATTTCATTT+TGG - chr3_1:16848313-16848332 None:intergenic 30.0%
!! AGGACTATTTGTTGCTTTAA+AGG + chr3_1:16848362-16848381 Msa0351050:intron 30.0%
!! GGACTATTTGTTGCTTTAAA+GGG + chr3_1:16848363-16848382 Msa0351050:intron 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr3_1:16848479-16848498 None:intergenic 30.0%
AATGACAGAACAGATGAATA+CGG + chr3_1:16848507-16848526 Msa0351050:three_prime_UTR 30.0%
ATATAAAGTCCCAATGCATT+TGG - chr3_1:16848663-16848682 None:intergenic 30.0%
AAATGCATTGGGACTTTATA+TGG + chr3_1:16848662-16848681 Msa0351050:three_prime_UTR 30.0%
CAATATTCTTTACTGTCACA+TGG + chr3_1:16848704-16848723 Msa0351050:three_prime_UTR 30.0%
!! TCAGAAGCTGATTTTATTCT+TGG - chr3_1:16848735-16848754 None:intergenic 30.0%
CTCCTCTTAACAAGTATAAT+AGG + chr3_1:16848940-16848959 Msa0351050:three_prime_UTR 30.0%
! TCCCTATTATACTTGTTAAG+AGG - chr3_1:16848945-16848964 None:intergenic 30.0%
AACATTCTACATTTCTGATC+CGG + chr3_1:16848965-16848984 Msa0351050:three_prime_UTR 30.0%
TATCAACCACAAAGCTTATA+TGG - chr3_1:16849234-16849253 None:intergenic 30.0%
! ATATAAGCTTTGTGGTTGAT+AGG + chr3_1:16849233-16849252 Msa0351050:three_prime_UTR 30.0%
ACACTTCTTCTCTTTAATTC+CGG - chr3_1:16849262-16849281 None:intergenic 30.0%
AATTTGAGAGGGAGTTGTTA+GGG - chr3_1:16842471-16842490 None:intergenic 35.0%
TAAGGTGTAAGAAGAGGAAT+GGG - chr3_1:16842588-16842607 None:intergenic 35.0%
ATCTTGTAAGGTGTAAGAAG+AGG - chr3_1:16842594-16842613 None:intergenic 35.0%
TCTTCTTACACCTTACAAGA+TGG + chr3_1:16842593-16842612 Msa0351050:CDS 35.0%
CTTCTTACACCTTACAAGAT+GGG + chr3_1:16842594-16842613 Msa0351050:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr3_1:16842606-16842625 None:intergenic 35.0%
GCAAATTCAATCTCTCTCAT+AGG + chr3_1:16842616-16842635 Msa0351050:CDS 35.0%
GGAGGTTAATTAGCAAAACA+AGG - chr3_1:16842714-16842733 None:intergenic 35.0%
! AAAACAACTCTGAAAATGGG+AGG - chr3_1:16842732-16842751 None:intergenic 35.0%
! TCCCATTTTCAGAGTTGTTT+TGG + chr3_1:16842731-16842750 Msa0351050:intron 35.0%
! GCCAAAACAACTCTGAAAAT+GGG - chr3_1:16842735-16842754 None:intergenic 35.0%
! TGCCAAAACAACTCTGAAAA+TGG - chr3_1:16842736-16842755 None:intergenic 35.0%
TAGGATCTTATTCTAGTGAG+TGG - chr3_1:16842759-16842778 None:intergenic 35.0%
CTCACTAGAATAAGATCCTA+TGG + chr3_1:16842759-16842778 Msa0351050:CDS 35.0%
TTGTCCTCTATTACTCTCAA+AGG + chr3_1:16842802-16842821 Msa0351050:CDS 35.0%
TATAAGAAGACCACCTTTAG+AGG - chr3_1:16842829-16842848 None:intergenic 35.0%
! TTTTGTCAGATTTGGCATGT+TGG + chr3_1:16842975-16842994 Msa0351050:CDS 35.0%
!! GTATGAGTTTGCTTAGGTTT+TGG - chr3_1:16843073-16843092 None:intergenic 35.0%
TGTACTGAATTAATGCTTGG+CGG + chr3_1:16843097-16843116 Msa0351050:intron 35.0%
CAATTAGCCAATAGGAGTAA+AGG + chr3_1:16843213-16843232 Msa0351050:intron 35.0%
TCTGGGGAGAAAATTGAAAA+TGG - chr3_1:16843400-16843419 None:intergenic 35.0%
ACTGGTAAGTTTCAAGCATT+TGG + chr3_1:16843531-16843550 Msa0351050:intron 35.0%
CTGGTAAGTTTCAAGCATTT+GGG + chr3_1:16843532-16843551 Msa0351050:intron 35.0%
TGGTAAGTTTCAAGCATTTG+GGG + chr3_1:16843533-16843552 Msa0351050:intron 35.0%
AACAACACAATCGTGAAAGA+AGG - chr3_1:16843622-16843641 None:intergenic 35.0%
!!! TTTGAAGTCCTGGTTTTGTT+TGG + chr3_1:16843672-16843691 Msa0351050:intron 35.0%
TTGTTCCTAAACAGTTTGAG+AGG + chr3_1:16843739-16843758 Msa0351050:intron 35.0%
CAATACCTCTCAAACTGTTT+AGG - chr3_1:16843747-16843766 None:intergenic 35.0%
ACCTTAACTTTCTTTGATGC+GGG - chr3_1:16843942-16843961 None:intergenic 35.0%
! TTTTGGGCATGTGTAATTGT+GGG + chr3_1:16844203-16844222 Msa0351050:intron 35.0%
AAATGTACGGAGGTAATTCA+AGG + chr3_1:16844269-16844288 Msa0351050:intron 35.0%
GGATTGATGAAGAGAATTTG+TGG + chr3_1:16844290-16844309 Msa0351050:intron 35.0%
TGGATTGTTAAGGTAACGTA+TGG + chr3_1:16844352-16844371 Msa0351050:intron 35.0%
!! GAAACTATGATGATGGTCTA+TGG + chr3_1:16844767-16844786 Msa0351050:intron 35.0%
GCAATGATTATTGTCAACCA+TGG - chr3_1:16844802-16844821 None:intergenic 35.0%
GACATCATAATCTTGACTGA+AGG - chr3_1:16844865-16844884 None:intergenic 35.0%
TCACTCTTACCTTAAGTAGT+TGG + chr3_1:16844883-16844902 Msa0351050:intron 35.0%
GTTGGACTAATACAAGTAGA+TGG + chr3_1:16844901-16844920 Msa0351050:intron 35.0%
GCAATGATGCACTCATATAA+TGG - chr3_1:16845016-16845035 None:intergenic 35.0%
ACTGAATAACCAGAGAAACT+TGG - chr3_1:16845067-16845086 None:intergenic 35.0%
!!! GTGTTTTTTTAGGAGTGTGA+GGG - chr3_1:16845140-16845159 None:intergenic 35.0%
!!! AGTGTTTTTTTAGGAGTGTG+AGG - chr3_1:16845141-16845160 None:intergenic 35.0%
TGCTAATAAGAATTGCCAAG+AGG - chr3_1:16845177-16845196 None:intergenic 35.0%
! TCTTAGACATCATTCTGGAA+TGG - chr3_1:16845305-16845324 None:intergenic 35.0%
GCACTTGATTTCAGAAATAG+GGG - chr3_1:16845444-16845463 None:intergenic 35.0%
CGCACTTGATTTCAGAAATA+GGG - chr3_1:16845445-16845464 None:intergenic 35.0%
!! CCTATTTCTGAAATCAAGTG+CGG + chr3_1:16845443-16845462 Msa0351050:three_prime_UTR 35.0%
!! CTATTTCTGAAATCAAGTGC+GGG + chr3_1:16845444-16845463 Msa0351050:three_prime_UTR 35.0%
AAGGTTGAGTTCAATGTGAA+AGG + chr3_1:16845467-16845486 Msa0351050:three_prime_UTR 35.0%
ACATTAACGCATTCGAATGT+TGG - chr3_1:16845775-16845794 None:intergenic 35.0%
ATTCGAATGCGTTAATGTCT+TGG + chr3_1:16845777-16845796 Msa0351050:intron 35.0%
ATCAAACAACCTACATTGTC+AGG - chr3_1:16845900-16845919 None:intergenic 35.0%
ATTTAAGGATCAGATTGACG+AGG + chr3_1:16845977-16845996 Msa0351050:three_prime_UTR 35.0%
TTTAAGGATCAGATTGACGA+GGG + chr3_1:16845978-16845997 Msa0351050:three_prime_UTR 35.0%
GATCAGTTGTCTTATAGGAA+TGG - chr3_1:16846046-16846065 None:intergenic 35.0%
ACATCTGCATACATTAACGT+CGG - chr3_1:16846269-16846288 None:intergenic 35.0%
CTGAAGGAGACTGAAAAAAA+TGG + chr3_1:16846317-16846336 Msa0351050:three_prime_UTR 35.0%
ATTTCTTCAACTTGCACAGT+TGG - chr3_1:16846571-16846590 None:intergenic 35.0%
CTCATTCAGCCTAAATATGA+TGG - chr3_1:16846877-16846896 None:intergenic 35.0%
! TTGAGTTTGAAGCAAATCCT+CGG - chr3_1:16846961-16846980 None:intergenic 35.0%
! AGGATTTGCTTCAAACTCAA+AGG + chr3_1:16846961-16846980 Msa0351050:three_prime_UTR 35.0%
TAACCTCAGTAGACTCAAAT+AGG - chr3_1:16847001-16847020 None:intergenic 35.0%
! TACATTCAATGGGTTCATGT+AGG + chr3_1:16847055-16847074 Msa0351050:three_prime_UTR 35.0%
ATGTTCAAAGTGTGCATCAA+GGG + chr3_1:16847166-16847185 Msa0351050:three_prime_UTR 35.0%
CTTGCATTTGTCACAATACA+TGG - chr3_1:16847210-16847229 None:intergenic 35.0%
! GATATAATCTAGCTTACCTC+GGG - chr3_1:16847250-16847269 None:intergenic 35.0%
GCGAATATTGAGTGACAAAA+AGG - chr3_1:16847306-16847325 None:intergenic 35.0%
! ACATTTAGTTCAGTTGGGTA+CGG - chr3_1:16847588-16847607 None:intergenic 35.0%
! TGATAAGAGGATGCTGTTTA+AGG + chr3_1:16847614-16847633 Msa0351050:three_prime_UTR 35.0%
! GTGTCCATTTTATTCTCAAC+AGG + chr3_1:16848101-16848120 Msa0351050:intron 35.0%
CTGAAGTCATTGACAATATC+AGG - chr3_1:16848233-16848252 None:intergenic 35.0%
AGCTTCAATAGCATTTCTTG+CGG - chr3_1:16848261-16848280 None:intergenic 35.0%
CTCAATTTGATGCAAATTGC+AGG + chr3_1:16848417-16848436 Msa0351050:intron 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG + chr3_1:16848426-16848445 Msa0351050:intron 35.0%
AAATCGACAACGATTCTCAA+GGG - chr3_1:16848538-16848557 None:intergenic 35.0%
GAAGCAGTTGTAAATGAGAT+AGG + chr3_1:16848573-16848592 Msa0351050:three_prime_UTR 35.0%
CTTTCTGCATATTCAGCAAA+TGG - chr3_1:16848627-16848646 None:intergenic 35.0%
TTTGCTGAATATGCAGAAAG+CGG + chr3_1:16848627-16848646 Msa0351050:three_prime_UTR 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr3_1:16848650-16848669 Msa0351050:three_prime_UTR 35.0%
GACTCTAATCCAAATGCATT+GGG + chr3_1:16848651-16848670 Msa0351050:three_prime_UTR 35.0%
TATTCTTTACTGTCACATGG+TGG + chr3_1:16848707-16848726 Msa0351050:three_prime_UTR 35.0%
TCAATGCTATAGCTGAAAAC+AGG + chr3_1:16848847-16848866 Msa0351050:three_prime_UTR 35.0%
CAATGCTATAGCTGAAAACA+GGG + chr3_1:16848848-16848867 Msa0351050:three_prime_UTR 35.0%
CACTTCTTCTCTTTAATTCC+GGG - chr3_1:16849261-16849280 None:intergenic 35.0%
CAATTTGAGAGGGAGTTGTT+AGG - chr3_1:16842472-16842491 None:intergenic 40.0%
GTAAGGTGTAAGAAGAGGAA+TGG - chr3_1:16842589-16842608 None:intergenic 40.0%
GAGTAATAGAGGACAACATG+TGG - chr3_1:16842798-16842817 None:intergenic 40.0%
! AGGACCTTTGAGAGTAATAG+AGG - chr3_1:16842809-16842828 None:intergenic 40.0%
TACTCTCAAAGGTCCTCTAA+AGG + chr3_1:16842813-16842832 Msa0351050:CDS 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr3_1:16842900-16842919 None:intergenic 40.0%
! ATGGACTAAAGAGCAAGTTG+AGG + chr3_1:16842905-16842924 Msa0351050:CDS 40.0%
GCATGAACAGCATCTACAAT+AGG - chr3_1:16842939-16842958 None:intergenic 40.0%
GTAGATGCTGTTCATGCTAA+AGG + chr3_1:16842942-16842961 Msa0351050:CDS 40.0%
!!! GTTTGCTTAGGTTTTGGCTA+GGG - chr3_1:16843067-16843086 None:intergenic 40.0%
!!! AGTTTGCTTAGGTTTTGGCT+AGG - chr3_1:16843068-16843087 None:intergenic 40.0%
GGTAATGACTGTTTAACCCT+TGG + chr3_1:16843144-16843163 Msa0351050:intron 40.0%
! TTTAACCCTTGGTGTGTGTT+TGG + chr3_1:16843155-16843174 Msa0351050:intron 40.0%
GTTTGGTCAGCAATGTGAAT+TGG + chr3_1:16843172-16843191 Msa0351050:intron 40.0%
GAACAATTGGAGTAAAGGGT+CGG + chr3_1:16843258-16843277 Msa0351050:intron 40.0%
TCAGAACAGAACAGAAGAAC+AGG + chr3_1:16843283-16843302 Msa0351050:intron 40.0%
!! TTGAAAATGGATTGGGAGGA+GGG - chr3_1:16843387-16843406 None:intergenic 40.0%
!! ATTGAAAATGGATTGGGAGG+AGG - chr3_1:16843388-16843407 None:intergenic 40.0%
!! AGAGAGTGTTTAGGTTTCTG+GGG - chr3_1:16843416-16843435 None:intergenic 40.0%
!! GAGAGAGTGTTTAGGTTTCT+GGG - chr3_1:16843417-16843436 None:intergenic 40.0%
TGAAAACAGAAACCCAGCAA+AGG - chr3_1:16843577-16843596 None:intergenic 40.0%
ACAATCGTGAAAGAAGGTTG+TGG - chr3_1:16843616-16843635 None:intergenic 40.0%
TCCCGCATCAAAGAAAGTTA+AGG + chr3_1:16843938-16843957 Msa0351050:CDS 40.0%
CAGCAAGCAAAATCAGATGA+AGG - chr3_1:16844034-16844053 None:intergenic 40.0%
! CTTTTGGGCATGTGTAATTG+TGG + chr3_1:16844202-16844221 Msa0351050:intron 40.0%
CATATGCAAGAAATGTACGG+AGG + chr3_1:16844259-16844278 Msa0351050:intron 40.0%
TATCATTTGCAAGATGTGGC+AGG + chr3_1:16844672-16844691 Msa0351050:three_prime_UTR 40.0%
CAAGATGTGGCAGGTATAAT+AGG + chr3_1:16844681-16844700 Msa0351050:intron 40.0%
CACTCTTTCTGCCAAGAAAT+TGG + chr3_1:16844821-16844840 Msa0351050:intron 40.0%
TCTTTCTGCCAAGAAATTGG+TGG + chr3_1:16844824-16844843 Msa0351050:intron 40.0%
CACATTGACCACCAATTTCT+TGG - chr3_1:16844835-16844854 None:intergenic 40.0%
CATGCAAAAGACCATAACCT+GGG - chr3_1:16844947-16844966 None:intergenic 40.0%
ACATGCAAAAGACCATAACC+TGG - chr3_1:16844948-16844967 None:intergenic 40.0%
CTTTACTGACCAAGTTTCTC+TGG + chr3_1:16845055-16845074 Msa0351050:intron 40.0%
GGATTTCTTACGTAAGGCAA+AGG - chr3_1:16845119-16845138 None:intergenic 40.0%
TGTGAGGGATTTCTTACGTA+AGG - chr3_1:16845125-16845144 None:intergenic 40.0%
TGCTCAGCCCTGTATTTATA+GGG - chr3_1:16845231-16845250 None:intergenic 40.0%
TCCAGAATGATGTCTAAGAG+AGG + chr3_1:16845306-16845325 Msa0351050:three_prime_UTR 40.0%
ACCTCTCTTAGACATCATTC+TGG - chr3_1:16845310-16845329 None:intergenic 40.0%
CCGCACTTGATTTCAGAAAT+AGG - chr3_1:16845446-16845465 None:intergenic 40.0%
!! TACTATCATGGGTGTCGAAT+TGG - chr3_1:16845629-16845648 None:intergenic 40.0%
GGTTGCAAATACACGCAAAT+GGG - chr3_1:16845804-16845823 None:intergenic 40.0%
AAACAACAGCCTGACAATGT+AGG + chr3_1:16845888-16845907 Msa0351050:intron 40.0%
TTAAGGATCAGATTGACGAG+GGG + chr3_1:16845979-16845998 Msa0351050:three_prime_UTR 40.0%
TGTCTTTGAGCATTTCATGG+TGG + chr3_1:16846010-16846029 Msa0351050:three_prime_UTR 40.0%
GTCTTTGAGCATTTCATGGT+GGG + chr3_1:16846011-16846030 Msa0351050:three_prime_UTR 40.0%
TGAAATGACAGCTTGGTATC+TGG - chr3_1:16846124-16846143 None:intergenic 40.0%
AAGGAGAGAATGTCCACAAA+TGG - chr3_1:16846155-16846174 None:intergenic 40.0%
TGGACTGCTTGGTAAGATAT+TGG + chr3_1:16846187-16846206 Msa0351050:intron 40.0%
GGACTGCTTGGTAAGATATT+GGG + chr3_1:16846188-16846207 Msa0351050:intron 40.0%
AACGTCGGTAATGTGAACAT+TGG - chr3_1:16846254-16846273 None:intergenic 40.0%
TATAGGTCACGTAGTCGAAA+AGG + chr3_1:16846289-16846308 Msa0351050:three_prime_UTR 40.0%
TGGAAAAAGGAGCAAAGTGA+TGG + chr3_1:16846337-16846356 Msa0351050:three_prime_UTR 40.0%
!! AGTGATGGATCTTACTCTTG+AGG + chr3_1:16846352-16846371 Msa0351050:three_prime_UTR 40.0%
ATAGATTGCATTGTACCCTG+TGG + chr3_1:16846474-16846493 Msa0351050:three_prime_UTR 40.0%
TAGATTGCATTGTACCCTGT+GGG + chr3_1:16846475-16846494 Msa0351050:three_prime_UTR 40.0%
! AGTTGGAGTATCATCACAAC+AGG - chr3_1:16846554-16846573 None:intergenic 40.0%
!! AGCTTGTAGTTCTGAACATC+CGG - chr3_1:16846774-16846793 None:intergenic 40.0%
AACTTGTGTTAGAGCAACGT+TGG - chr3_1:16846901-16846920 None:intergenic 40.0%
TGACCTATTTGAGTCTACTG+AGG + chr3_1:16846995-16847014 Msa0351050:three_prime_UTR 40.0%
TGTGAGATAGAGACTGATCT+CGG + chr3_1:16847128-16847147 Msa0351050:three_prime_UTR 40.0%
ATGCACACTTTGAACATGTC+TGG - chr3_1:16847163-16847182 None:intergenic 40.0%
CATGTTCAAAGTGTGCATCA+AGG + chr3_1:16847165-16847184 Msa0351050:three_prime_UTR 40.0%
GTCCAGGTTATAGATAACAC+CGG + chr3_1:16847353-16847372 Msa0351050:three_prime_UTR 40.0%
CAAAACAAACACAGTTGAGC+CGG - chr3_1:16847375-16847394 None:intergenic 40.0%
!! AATGTCCAGGATTTGCTAGA+TGG + chr3_1:16847428-16847447 Msa0351050:three_prime_UTR 40.0%
!! CAGGATTTGCTAGATGGAAT+GGG + chr3_1:16847434-16847453 Msa0351050:three_prime_UTR 40.0%
TGGGTGTCTGAGAACAAATT+TGG - chr3_1:16847494-16847513 None:intergenic 40.0%
! TATTTCCGTGTTTTGTCCAG+AGG + chr3_1:16847550-16847569 Msa0351050:intron 40.0%
TCATTCCTCTGGACAAAACA+CGG - chr3_1:16847558-16847577 None:intergenic 40.0%
! TGTTTTGTCCAGAGGAATGA+AGG + chr3_1:16847558-16847577 Msa0351050:intron 40.0%
ATGCCAATTTATACCGCAAC+TGG + chr3_1:16847649-16847668 Msa0351050:three_prime_UTR 40.0%
AAAGAAACTGACACATGCTG+AGG + chr3_1:16847687-16847706 Msa0351050:three_prime_UTR 40.0%
CAGAGTTTCTTGACCTTACA+TGG + chr3_1:16847718-16847737 Msa0351050:three_prime_UTR 40.0%
ATGCACTCTTCGTTCACAAT+CGG + chr3_1:16847756-16847775 Msa0351050:intron 40.0%
GACTTGTCGGTAGAAGATAT+CGG - chr3_1:16848149-16848168 None:intergenic 40.0%
! ATTGCTTGTGAGTGACTTGT+CGG - chr3_1:16848162-16848181 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr3_1:16848260-16848279 Msa0351050:three_prime_UTR 40.0%
!! TTTGATGGTGTCGAAATCCA+TGG + chr3_1:16848441-16848460 Msa0351050:three_prime_UTR 40.0%
GAAATCGACAACGATTCTCA+AGG - chr3_1:16848539-16848558 None:intergenic 40.0%
!! GAATCGTTGTCGATTTCCTT+TGG + chr3_1:16848542-16848561 Msa0351050:three_prime_UTR 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr3_1:16848561-16848580 None:intergenic 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr3_1:16848786-16848805 None:intergenic 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr3_1:16848783-16848802 Msa0351050:three_prime_UTR 40.0%
AGGGCAGATCTTGTAGTTTA+TGG + chr3_1:16848867-16848886 Msa0351050:three_prime_UTR 40.0%
GCATTAAGTGCAAACCTCTT+TGG - chr3_1:16848921-16848940 None:intergenic 40.0%
TACATTTCTGATCCGGTTGT+AGG + chr3_1:16848972-16848991 Msa0351050:three_prime_UTR 40.0%
TGATCCGGTTGTAGGTTATA+CGG + chr3_1:16848980-16848999 Msa0351050:three_prime_UTR 40.0%
TAGTCCGTATAACCTACAAC+CGG - chr3_1:16848987-16849006 None:intergenic 40.0%
ATGATGTACTGTAGCATCCA+AGG + chr3_1:16849030-16849049 Msa0351050:three_prime_UTR 40.0%
! TTCATACTAGCTTATCGGCT+AGG + chr3_1:16849162-16849181 Msa0351050:three_prime_UTR 40.0%
TGGTTGAGGAACATTGCCAT+AGG - chr3_1:16842778-16842797 None:intergenic 45.0%
TAGAGGACAACATGTGGTTG+AGG - chr3_1:16842792-16842811 None:intergenic 45.0%
! TCTCAAAGGTCCTCTAAAGG+TGG + chr3_1:16842816-16842835 Msa0351050:CDS 45.0%
CTTCTTATAGCCGAAGCTAC+TGG + chr3_1:16842840-16842859 Msa0351050:CDS 45.0%
ATCCAGACAGTCCAGGTATA+TGG + chr3_1:16842886-16842905 Msa0351050:CDS 45.0%
ATGCTTGGCGGTAAAATCCT+AGG + chr3_1:16843109-16843128 Msa0351050:intron 45.0%
TGCTTGGCGGTAAAATCCTA+GGG + chr3_1:16843110-16843129 Msa0351050:intron 45.0%
AGCCAATAGGAGTAAAGGGA+CGG + chr3_1:16843218-16843237 Msa0351050:intron 45.0%
AACCGTCCCTTTACTCCTAT+TGG - chr3_1:16843223-16843242 None:intergenic 45.0%
GGAAGAATAAGCTGCCGTAT+GGG - chr3_1:16843365-16843384 None:intergenic 45.0%
!! TGAAAATGGATTGGGAGGAG+GGG - chr3_1:16843386-16843405 None:intergenic 45.0%
!! GGAGAGAGTGTTTAGGTTTC+TGG - chr3_1:16843418-16843437 None:intergenic 45.0%
!! CTGTATGGGAGAGAGTGTTT+AGG - chr3_1:16843425-16843444 None:intergenic 45.0%
TCGTGAAAGAAGGTTGTGGA+TGG - chr3_1:16843612-16843631 None:intergenic 45.0%
!!! TCCTGGTTTTGTTTGGTGAC+AGG + chr3_1:16843679-16843698 Msa0351050:intron 45.0%
ACCTGTCACCAAACAAAACC+AGG - chr3_1:16843683-16843702 None:intergenic 45.0%
AGGCATGCATACGTGTTTAG+TGG + chr3_1:16844701-16844720 Msa0351050:intron 45.0%
!! GGGTGATGGACGAATTTCAT+AGG - chr3_1:16844927-16844946 None:intergenic 45.0%
ATGAAATTCGTCCATCACCC+AGG + chr3_1:16844927-16844946 Msa0351050:intron 45.0%
AAAGACCATAACCTGGGTGA+TGG - chr3_1:16844941-16844960 None:intergenic 45.0%
CATCATTGCTTTGACTGCCT+GGG + chr3_1:16845027-16845046 Msa0351050:intron 45.0%
GTGCTCAGCCCTGTATTTAT+AGG - chr3_1:16845232-16845251 None:intergenic 45.0%
!! TTCTGAAATCAAGTGCGGGA+AGG + chr3_1:16845448-16845467 Msa0351050:three_prime_UTR 45.0%
AAGGTCGAGTGATCCACTTA+TGG + chr3_1:16845486-16845505 Msa0351050:three_prime_UTR 45.0%
GATCAGGAACACTCCATAAG+TGG - chr3_1:16845502-16845521 None:intergenic 45.0%
! TCTGCAGGATTTGTTCGATC+AGG - chr3_1:16845518-16845537 None:intergenic 45.0%
TGATCGAACAAATCCTGCAG+AGG + chr3_1:16845517-16845536 Msa0351050:three_prime_UTR 45.0%
! GCTGCTAGATGAGAAGGTAT+CGG + chr3_1:16845559-16845578 Msa0351050:intron 45.0%
CGGTTGCAAATACACGCAAA+TGG - chr3_1:16845805-16845824 None:intergenic 45.0%
!! GAATTTTCTGGGAAGCACGA+AGG + chr3_1:16846079-16846098 Msa0351050:three_prime_UTR 45.0%
GGACATTCTCTCCTTAACCA+AGG + chr3_1:16846160-16846179 Msa0351050:three_prime_UTR 45.0%
AGTCGAAAAGGATGTGCTGA+AGG + chr3_1:16846301-16846320 Msa0351050:three_prime_UTR 45.0%
CAGATGAGTCATGTGAATCG+AGG - chr3_1:16846529-16846548 None:intergenic 45.0%
ATGGTAAACTTTCCGTCTGC+AGG + chr3_1:16846690-16846709 Msa0351050:intron 45.0%
! GTTCTGAACATCCGGTAGAT+CGG - chr3_1:16846766-16846785 None:intergenic 45.0%
TTGAAGCAAATCCTCGGACA+GGG - chr3_1:16846955-16846974 None:intergenic 45.0%
! TTTGAAGCAAATCCTCGGAC+AGG - chr3_1:16846956-16846975 None:intergenic 45.0%
TCTATCTCACATGTCCTAGC+AGG - chr3_1:16847119-16847138 None:intergenic 45.0%
GTGAGATAGAGACTGATCTC+GGG + chr3_1:16847129-16847148 Msa0351050:three_prime_UTR 45.0%
! TAATCTAGCTTACCTCGGGA+TGG - chr3_1:16847246-16847265 None:intergenic 45.0%
!! AGCCGGTGTTATCTATAACC+TGG - chr3_1:16847358-16847377 None:intergenic 45.0%
CCATTCCATCTAGCAAATCC+TGG - chr3_1:16847436-16847455 None:intergenic 45.0%
!! CCAGGATTTGCTAGATGGAA+TGG + chr3_1:16847433-16847452 Msa0351050:three_prime_UTR 45.0%
ACGCCAGTTGCGGTATAAAT+TGG - chr3_1:16847655-16847674 None:intergenic 45.0%
TTTCTTGACCTTACATGGCC+TGG + chr3_1:16847723-16847742 Msa0351050:three_prime_UTR 45.0%
GCAGTCAACCACATCAAGAT+CGG + chr3_1:16847833-16847852 Msa0351050:intron 45.0%
CTAGACAACCGATCTTGATG+TGG - chr3_1:16847844-16847863 None:intergenic 45.0%
CTGGACCGTCCAATATTGAT+TGG + chr3_1:16847914-16847933 Msa0351050:intron 45.0%
! TCAACAGGTTTTCAGCCGAA+TGG + chr3_1:16848116-16848135 Msa0351050:intron 45.0%
! GATATCGGTGCTTGTCCATT+CGG - chr3_1:16848134-16848153 None:intergenic 45.0%
AAAAATTCTCGCCACCGAGA+AGG + chr3_1:16848189-16848208 Msa0351050:three_prime_UTR 45.0%
GACAGAACAGATGAATACGG+TGG + chr3_1:16848510-16848529 Msa0351050:three_prime_UTR 45.0%
GAGATAGGAGCCGATAAAGT+TGG + chr3_1:16848588-16848607 Msa0351050:three_prime_UTR 45.0%
TCATTGGCACAAGGCTGTAA+GGG - chr3_1:16848770-16848789 None:intergenic 45.0%
AAGCCTTTCTCATTGGCACA+AGG - chr3_1:16848779-16848798 None:intergenic 45.0%
GGCTTTCAATGGCACTTTCA+TGG + chr3_1:16848794-16848813 Msa0351050:three_prime_UTR 45.0%
CAATGGCACTTTCATGGTTG+CGG + chr3_1:16848800-16848819 Msa0351050:three_prime_UTR 45.0%
AATGGCACTTTCATGGTTGC+GGG + chr3_1:16848801-16848820 Msa0351050:three_prime_UTR 45.0%
CGAATCCAGATTTGCCAAAG+AGG + chr3_1:16848904-16848923 Msa0351050:three_prime_UTR 45.0%
GCAAACCTCTTTGGCAAATC+TGG - chr3_1:16848912-16848931 None:intergenic 45.0%
TGTACTGTAGCATCCAAGGT+TGG + chr3_1:16849034-16849053 Msa0351050:three_prime_UTR 45.0%
!! CTTTGTGGTTGATAGGATCC+CGG + chr3_1:16849240-16849259 Msa0351050:three_prime_UTR 45.0%
GTCGGATACACCAGTAGCTT+CGG - chr3_1:16842853-16842872 None:intergenic 50.0%
GTGTATCCGACACAGCTCAA+GGG + chr3_1:16842862-16842881 Msa0351050:CDS 50.0%
TGGATACCCTTGAGCTGTGT+CGG - chr3_1:16842871-16842890 None:intergenic 50.0%
GTCCATATACCTGGACTGTC+TGG - chr3_1:16842891-16842910 None:intergenic 50.0%
! CTAAAGAGCAAGTTGAGGCG+TGG + chr3_1:16842910-16842929 Msa0351050:CDS 50.0%
GCTGACCAAACACACACCAA+GGG - chr3_1:16843163-16843182 None:intergenic 50.0%
TGCTGACCAAACACACACCA+AGG - chr3_1:16843164-16843183 None:intergenic 50.0%
GGGAAGAATAAGCTGCCGTA+TGG - chr3_1:16843366-16843385 None:intergenic 50.0%
AACAGATCCAAGCGATAGCG+CGG + chr3_1:16844624-16844643 Msa0351050:exon 50.0%
GTCTATGGTCAGCATCTCCA+TGG + chr3_1:16844782-16844801 Msa0351050:intron 50.0%
TTCGTCCATCACCCAGGTTA+TGG + chr3_1:16844933-16844952 Msa0351050:intron 50.0%
GCATCATTGCTTTGACTGCC+TGG + chr3_1:16845026-16845045 Msa0351050:intron 50.0%
TGGTCAGTAAAGACAGACCC+AGG - chr3_1:16845047-16845066 None:intergenic 50.0%
TCGAACAAATCCTGCAGAGG+AGG + chr3_1:16845520-16845539 Msa0351050:three_prime_UTR 50.0%
CGAACAAATCCTGCAGAGGA+GGG + chr3_1:16845521-16845540 Msa0351050:three_prime_UTR 50.0%
TCTCATCTAGCAGCAGCATG+TGG - chr3_1:16845553-16845572 None:intergenic 50.0%
CATGCTGCTGCTAGATGAGA+AGG + chr3_1:16845553-16845572 Msa0351050:three_prime_UTR 50.0%
AAGGTCTGGAAGATCACTCC+AGG + chr3_1:16846098-16846117 Msa0351050:three_prime_UTR 50.0%
CTCTCCTTAACCAAGGACGA+TGG + chr3_1:16846167-16846186 Msa0351050:three_prime_UTR 50.0%
CAGTCCATCGTCCTTGGTTA+AGG - chr3_1:16846174-16846193 None:intergenic 50.0%
GTCAGCATACACATCCCACA+GGG - chr3_1:16846492-16846511 None:intergenic 50.0%
TGTCAGCATACACATCCCAC+AGG - chr3_1:16846493-16846512 None:intergenic 50.0%
TTTCCGTCTGCAGGAGTCAT+GGG + chr3_1:16846699-16846718 Msa0351050:intron 50.0%
! GGGGTGTCAAATGCGTTCTA+CGG + chr3_1:16846720-16846739 Msa0351050:three_prime_UTR 50.0%
GTTGCTGAATGCCGATCTAC+CGG + chr3_1:16846752-16846771 Msa0351050:three_prime_UTR 50.0%
CAAGTTGTCAGCCAGATGAC+CGG + chr3_1:16846915-16846934 Msa0351050:three_prime_UTR 50.0%
AGATAGAGACTGATCTCGGG+TGG + chr3_1:16847132-16847151 Msa0351050:three_prime_UTR 50.0%
TCAAGGGTAATCACTGCTGC+TGG + chr3_1:16847182-16847201 Msa0351050:three_prime_UTR 50.0%
CAAGGGTAATCACTGCTGCT+GGG + chr3_1:16847183-16847202 Msa0351050:three_prime_UTR 50.0%
AAGGGTAATCACTGCTGCTG+GGG + chr3_1:16847184-16847203 Msa0351050:three_prime_UTR 50.0%
! CAGGTTTAAGGTTCACGTCC+AGG + chr3_1:16847337-16847356 Msa0351050:intron 50.0%
TCGCATTGTGTCGCAGTTTC+TGG + chr3_1:16847400-16847419 Msa0351050:three_prime_UTR 50.0%
CGCATTGTGTCGCAGTTTCT+GGG + chr3_1:16847401-16847420 Msa0351050:three_prime_UTR 50.0%
!! GTTTCTGGGACAGAATGTCC+AGG + chr3_1:16847415-16847434 Msa0351050:three_prime_UTR 50.0%
ACGGAATGCCTTCATTCCTC+TGG - chr3_1:16847569-16847588 None:intergenic 50.0%
CATTACAGCCAGGCCATGTA+AGG - chr3_1:16847734-16847753 None:intergenic 50.0%
GAGTGCATGACATTACAGCC+AGG - chr3_1:16847744-16847763 None:intergenic 50.0%
TCATCTGTCCCAAGCCTTCT+CGG - chr3_1:16848206-16848225 None:intergenic 50.0%
GTCGAAATCCATGGAGCTCA+TGG + chr3_1:16848450-16848469 Msa0351050:three_prime_UTR 50.0%
CTCATTGGCACAAGGCTGTA+AGG - chr3_1:16848771-16848790 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr3_1:16848773-16848792 Msa0351050:three_prime_UTR 50.0%
GGAGGCTATGACAGACAAGA+CGG + chr3_1:16848822-16848841 Msa0351050:three_prime_UTR 50.0%
GAGGCTATGACAGACAAGAC+GGG + chr3_1:16848823-16848842 Msa0351050:three_prime_UTR 50.0%
GTAGCATCCAAGGTTGGAAG+TGG + chr3_1:16849040-16849059 Msa0351050:three_prime_UTR 50.0%
GAAGGTTCCACTTCCAACCT+TGG - chr3_1:16849050-16849069 None:intergenic 50.0%
GGTGTATCCGACACAGCTCA+AGG + chr3_1:16842861-16842880 Msa0351050:CDS 55.0%
!! CAAGGGTATCCAGACAGTCC+AGG + chr3_1:16842879-16842898 Msa0351050:CDS 55.0%
AACCCCCTCTCTCTCCCATA+CGG + chr3_1:16843348-16843367 Msa0351050:intron 55.0%
TTGTGGGCGTGTGATGCACA+AGG + chr3_1:16844219-16844238 Msa0351050:intron 55.0%
ACAGATCCAAGCGATAGCGC+GGG + chr3_1:16844625-16844644 Msa0351050:exon 55.0%
!! AGGGGTCAGCTTTGAAGCCA+TGG - chr3_1:16845426-16845445 None:intergenic 55.0%
GGATCAGATTGACGAGGGGT+CGG + chr3_1:16845983-16846002 Msa0351050:three_prime_UTR 55.0%
! TTCTGGGAAGCACGAAGGTC+TGG + chr3_1:16846084-16846103 Msa0351050:three_prime_UTR 55.0%
TGACAGCTTGGTATCTGGCC+TGG - chr3_1:16846119-16846138 None:intergenic 55.0%
!! ACCAAGGACGATGGACTGCT+TGG + chr3_1:16846176-16846195 Msa0351050:three_prime_UTR 55.0%
ACCAAGCAGTCCATCGTCCT+TGG - chr3_1:16846180-16846199 None:intergenic 55.0%
CTTTCCGTCTGCAGGAGTCA+TGG + chr3_1:16846698-16846717 Msa0351050:intron 55.0%
TTCCGTCTGCAGGAGTCATG+GGG + chr3_1:16846700-16846719 Msa0351050:intron 55.0%
GCTTTGGCACTGTTCCTGCT+AGG + chr3_1:16847102-16847121 Msa0351050:three_prime_UTR 55.0%
TACCTCGGGATGGCTGTTCT+AGG - chr3_1:16847236-16847255 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr3_1:16848461-16848480 None:intergenic 55.0%
TGCCGTATGGGAGAGAGAGG+GGG - chr3_1:16843353-16843372 None:intergenic 60.0%
CTGCCGTATGGGAGAGAGAG+GGG - chr3_1:16843354-16843373 None:intergenic 60.0%
GCTGCCGTATGGGAGAGAGA+GGG - chr3_1:16843355-16843374 None:intergenic 60.0%
AGCTGCCGTATGGGAGAGAG+AGG - chr3_1:16843356-16843375 None:intergenic 60.0%
TGTTGACCCGCGCTATCGCT+TGG - chr3_1:16844634-16844653 None:intergenic 60.0%
TGGATGCTTCCCTCCTCTGC+AGG - chr3_1:16845533-16845552 None:intergenic 60.0%
TCCGTCTGCAGGAGTCATGG+GGG + chr3_1:16846701-16846720 Msa0351050:intron 60.0%
ACCCCCATGACTCCTGCAGA+CGG - chr3_1:16846705-16846724 None:intergenic 60.0%
GCAAGGTTGGACCGGTCATC+TGG - chr3_1:16846929-16846948 None:intergenic 60.0%
CAGGGTCAGCAAGGTTGGAC+CGG - chr3_1:16846937-16846956 None:intergenic 60.0%
TCGGACAGGGTCAGCAAGGT+TGG - chr3_1:16846942-16846961 None:intergenic 60.0%
AACCTTGCTGACCCTGTCCG+AGG + chr3_1:16846941-16846960 Msa0351050:three_prime_UTR 60.0%
ATCCTCGGACAGGGTCAGCA+AGG - chr3_1:16846946-16846965 None:intergenic 60.0%
TGCCTAGAACAGCCATCCCG+AGG + chr3_1:16847231-16847250 Msa0351050:three_prime_UTR 60.0%
CCGTGTAGCTACGCCAGTTG+CGG - chr3_1:16847665-16847684 None:intergenic 60.0%
CCGCAACTGGCGTAGCTACA+CGG + chr3_1:16847662-16847681 Msa0351050:three_prime_UTR 60.0%
TTCTCGCCACCGAGAAGGCT+TGG + chr3_1:16848194-16848213 Msa0351050:three_prime_UTR 60.0%
TCTCGCCACCGAGAAGGCTT+GGG + chr3_1:16848195-16848214 Msa0351050:three_prime_UTR 60.0%
TCTGTCCCAAGCCTTCTCGG+TGG - chr3_1:16848203-16848222 None:intergenic 60.0%
GGCACTTTCATGGTTGCGGG+AGG + chr3_1:16848804-16848823 Msa0351050:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 16842448 16849290 16842448 ID=Msa0351050;Name=Msa0351050
chr3_1 mRNA 16842448 16849290 16842448 ID=Msa0351050-mRNA-1;Parent=Msa0351050;Name=Msa0351050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113|0.85|1|1|0.71|0.66|15|2541|164
chr3_1 exon 16842448 16842637 16842448 ID=Msa0351050-mRNA-1:exon:4056;Parent=Msa0351050-mRNA-1
chr3_1 exon 16842743 16843014 16842743 ID=Msa0351050-mRNA-1:exon:4057;Parent=Msa0351050-mRNA-1
chr3_1 exon 16843893 16843959 16843893 ID=Msa0351050-mRNA-1:exon:4058;Parent=Msa0351050-mRNA-1
chr3_1 exon 16844563 16844693 16844563 ID=Msa0351050-mRNA-1:exon:4059;Parent=Msa0351050-mRNA-1
chr3_1 exon 16845242 16845327 16845242 ID=Msa0351050-mRNA-1:exon:4060;Parent=Msa0351050-mRNA-1
chr3_1 exon 16845423 16845574 16845423 ID=Msa0351050-mRNA-1:exon:4061;Parent=Msa0351050-mRNA-1
chr3_1 exon 16845933 16846197 16845933 ID=Msa0351050-mRNA-1:exon:4062;Parent=Msa0351050-mRNA-1
chr3_1 exon 16846285 16846381 16846285 ID=Msa0351050-mRNA-1:exon:4063;Parent=Msa0351050-mRNA-1
chr3_1 exon 16846469 16846596 16846469 ID=Msa0351050-mRNA-1:exon:4064;Parent=Msa0351050-mRNA-1
chr3_1 exon 16846712 16846796 16846712 ID=Msa0351050-mRNA-1:exon:4065;Parent=Msa0351050-mRNA-1
chr3_1 exon 16846887 16847252 16846887 ID=Msa0351050-mRNA-1:exon:4066;Parent=Msa0351050-mRNA-1
chr3_1 exon 16847340 16847460 16847340 ID=Msa0351050-mRNA-1:exon:4067;Parent=Msa0351050-mRNA-1
chr3_1 exon 16847570 16847747 16847570 ID=Msa0351050-mRNA-1:exon:4068;Parent=Msa0351050-mRNA-1
chr3_1 exon 16848123 16848281 16848123 ID=Msa0351050-mRNA-1:exon:4069;Parent=Msa0351050-mRNA-1
chr3_1 exon 16848439 16849290 16848439 ID=Msa0351050-mRNA-1:exon:4070;Parent=Msa0351050-mRNA-1
chr3_1 five_prime_UTR 16842448 16842560 16842448 ID=Msa0351050-mRNA-1:five_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 CDS 16842561 16842637 16842561 ID=Msa0351050-mRNA-1:cds;Parent=Msa0351050-mRNA-1
chr3_1 CDS 16842743 16843014 16842743 ID=Msa0351050-mRNA-1:cds;Parent=Msa0351050-mRNA-1
chr3_1 CDS 16843893 16843959 16843893 ID=Msa0351050-mRNA-1:cds;Parent=Msa0351050-mRNA-1
chr3_1 CDS 16844563 16844641 16844563 ID=Msa0351050-mRNA-1:cds;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16844642 16844693 16844642 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16845242 16845327 16845242 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16845423 16845574 16845423 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16845933 16846197 16845933 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16846285 16846381 16846285 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16846469 16846596 16846469 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16846712 16846796 16846712 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16846887 16847252 16846887 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16847340 16847460 16847340 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16847570 16847747 16847570 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16848123 16848281 16848123 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
chr3_1 three_prime_UTR 16848439 16849290 16848439 ID=Msa0351050-mRNA-1:three_prime_utr;Parent=Msa0351050-mRNA-1
Gene Sequence

>Msa0351050

ATGGAAGCTGCTAAAACTGCTGATCCCATTCCTCTTCTTACACCTTACAAGATGGGCAAATTCAATCTCTCTCATAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCCTATGGCAATGTTCCTCAACCACATGTTGTCCTCTATTACTCTCAAAGGTCCTCTAAAGGTGGTCTTCTTATAGCCGAAGCTACTGGTGTATCCGACACAGCTCAAGGGTATCCAGACAGTCCAGGTATATGGACTAAAGAGCAAGTTGAGGCGTGGAAACCTATTGTAGATGCTGTTCATGCTAAAGGTGCTACATTCTTTTGTCAGATTTGGCATGTTGGAAGATTTTCAAATTCAGTGATAAGTTTGAAGGAGAATCGTGAGATTGAGAGCGAGAAGAGAATCCCGCATCAAAGAAAGTTAAGGTTTTCTATATGGGCTCATGCTCATGCTTATTGTGTTAATGATGAGAAACATATAGTCTATAACAGATCCAAGCGATAG
Protein sequence

>Msa0351050

MEAAKTADPIPLLTPYKMGKFNLSHRVVLAPLTRIRSYGNVPQPHVVLYYSQRSSKGGLLIAEATGVSDTAQGYPDSPGIWTKEQVEAWKPIVDAVHAKGATFFCQIWHVGRFSNSVISLKENREIESEKRIPHQRKLRFSIWAHAHAYCVNDEKHIVYNRSKR*