AlfalfaGEDB | Msa0220920

M. sativa cultivar zhongmu-4 / Msa0220920

KEGG: K08286
GO: GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009838 GO:0009908 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010227 GO:0010393 GO:0010468 GO:0016020 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0042737 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044464 GO:0045488 GO:0045490 GO:0046777 GO:0048364 GO:0048367 GO:0048437 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1901575 GO:1905392
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0220920	XP_013465156.1	95.385	975	45	0	19	993	19	993	0.0	1867

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0220920	sp\|Q9SGP2\|HSL1_ARATH	58.687	990	381	13	19	988	11	992	0.0	1115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0220920	A0A072VC59	95.385	975	45	0	19	993	19	993	0.0	1867

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017670	Msa0220920	0.804944	1.693563e-49	-8.615850e-47
Msa0098040	Msa0220920	0.807773	4.291723e-50	-8.615850e-47
Msa0105410	Msa0220920	0.813606	2.350710e-51	-8.615850e-47
Msa0220920	Msa0300240	0.894258	2.919003e-75	-8.615850e-47
Msa0220920	Msa0307670	0.816223	6.176125e-52	-8.615850e-47
Msa0220920	Msa0337580	0.886629	2.895683e-72	-8.615850e-47
Msa0220920	Msa0792370	0.821194	4.595379e-53	-8.615850e-47
Msa0220920	Msa0833530	0.801740	7.806603e-49	-8.615850e-47
Msa0220920	Msa1111380	0.801086	1.062822e-48	-8.615850e-47
Msa0220920	Msa1341840	0.821052	4.954704e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0220920	MtrunA17_Chr2g0324931	95.385	975	45	0	19	993	19	993	1867
Msa0220920	MtrunA17_Chr4g0046511	60.262	994	379	11	6	988	7	995	1134
Msa0220920	MtrunA17_Chr2g0282831	58.673	980	364	14	22	990	18	967	1041
Msa0220920	MtrunA17_Chr5g0400701	43.517	1018	500	20	2	965	1	997	751
Msa0220920	MtrunA17_Chr3g0140871	40.974	986	505	19	20	967	17	963	656
Msa0220920	MtrunA17_Chr2g0280191	40.748	989	529	19	3	973	23	972	649
Msa0220920	MtrunA17_Chr6g0487061	39.694	980	556	15	5	964	13	977	641
Msa0220920	MtrunA17_Chr1g0183231	40.854	984	531	23	24	976	24	987	637
Msa0220920	MtrunA17_Chr1g0190411	39.469	1016	553	22	1	975	1	995	625
Msa0220920	MtrunA17_Chr4g0017251	40.408	980	517	19	6	963	13	947	622

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0220920	AT1G28440.1	58.687	990	381	13	19	988	11	992	1115
Msa0220920	AT4G28490.1	57.782	983	392	13	19	983	17	994	1025
Msa0220920	AT5G65710.1	45.726	971	470	21	34	965	36	988	732
Msa0220920	AT1G09970.1	40.596	973	526	19	11	966	17	954	643
Msa0220920	AT1G09970.2	40.554	974	526	20	11	966	17	955	638
Msa0220920	AT5G25930.1	40.895	961	519	22	30	965	30	966	634
Msa0220920	AT4G28650.1	40.941	999	543	21	7	974	5	987	630
Msa0220920	AT3G19700.1	39.062	1024	554	22	1	991	1	987	613
Msa0220920	AT1G72180.1	39.130	989	533	18	8	970	20	965	605
Msa0220920	AT3G49670.1	39.252	963	550	20	26	973	29	971	601

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Find 286 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGCATGATGAATAA+TGG	0.421588	2_1:+69406883	None:intergenic
AAACAGTTTCCAAGACTTGC+CGG	0.398677	2_1:+69405701	None:intergenic
AAACTTGCTATAACAAGTTC+TGG	0.346052	2_1:+69406139	None:intergenic
AAAGGTCGAGTTCTTCGATA+GGG	0.589106	2_1:+69406479	None:intergenic
AAATCAGCCAAACTTCCATT+TGG	0.446054	2_1:+69404582	None:intergenic
AAATCTTGATTCTAAATACA+AGG	0.561660	2_1:-69403987	Msa0220920:CDS
AAATGAGAAGAAGAGTTGAG+AGG	0.585447	2_1:+69407055	None:intergenic
AAATGTTGAGGACCCTGAAA+AGG	0.595623	2_1:-69404718	Msa0220920:CDS
AAATTAAATGGTGGGTGACT+GGG	0.496271	2_1:+69407079	None:intergenic
AAATTTGATAATCCTAAACG+TGG	0.729629	2_1:+69406064	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGCATCTGATATATACTA+GGG	-	chr2_1:69403527-69403546	Msa0220920:three_prime_UTR	30.0%
GGTGCATAATTTAACTAACT+TGG	+	chr2_1:69403567-69403586	None:intergenic	30.0%
TTTGGAAAGATTTGATGCTT+CGG	-	chr2_1:69404638-69404657	Msa0220920:CDS	30.0%
CTTGTAGAAAATTCACTTTC+TGG	-	chr2_1:69405086-69405105	Msa0220920:CDS	30.0%
CCTGATATTGAATTGGAAAT+AGG	+	chr2_1:69405113-69405132	None:intergenic	30.0%
CCTATTTCCAATTCAATATC+AGG	-	chr2_1:69405110-69405129	Msa0220920:CDS	30.0%
GATCAATTCCTGATTCAATT+GGG	-	chr2_1:69405180-69405199	Msa0220920:CDS	30.0%
GAAGCTTAATGATCTTGATT+TGG	-	chr2_1:69405355-69405374	Msa0220920:CDS	30.0%
TTGGCTAATAATAGGATTGT+TGG	-	chr2_1:69405374-69405393	Msa0220920:CDS	30.0%
GGTAATATTCCTAGTGAATT+AGG	-	chr2_1:69405395-69405414	Msa0220920:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	69403517	69407178	69403517	ID=Msa0220920;Name=Msa0220920
chr2_1	mRNA	69403517	69407178	69403517	ID=Msa0220920-mRNA-1;Parent=Msa0220920;Name=Msa0220920-mRNA-1;_AED=0.11;_eAED=0.11;_QI=264\|1\|1\|1\|1\|1\|2\|285\|993
chr2_1	exon	69403517	69404184	69403517	ID=Msa0220920-mRNA-1:exon:19666;Parent=Msa0220920-mRNA-1
chr2_1	exon	69404316	69407178	69404316	ID=Msa0220920-mRNA-1:exon:19665;Parent=Msa0220920-mRNA-1
chr2_1	five_prime_UTR	69406915	69407178	69406915	ID=Msa0220920-mRNA-1:five_prime_utr;Parent=Msa0220920-mRNA-1
chr2_1	CDS	69404316	69406914	69404316	ID=Msa0220920-mRNA-1:cds;Parent=Msa0220920-mRNA-1
chr2_1	CDS	69403802	69404184	69403802	ID=Msa0220920-mRNA-1:cds;Parent=Msa0220920-mRNA-1
chr2_1	three_prime_UTR	69403517	69403801	69403517	ID=Msa0220920-mRNA-1:three_prime_utr;Parent=Msa0220920-mRNA-1

Gene Sequence

>Msa0220920

ATGGTTGAACCATTATTCATCATGCTCCTTTTTCTCTTTCTCTCCCTAATCTCTCCCACACTCTCTCTCAACCAAGAAGGTCTCTTCCTCCTCCAAGCCAAACTCCATCTCTCTGATCCCTCCAACACTCTCTCCAACTGGAACCCTAACGACTCATCTCCGTGCAACTGGACCGGCATCCTTTGCAACAATCTCACAAACTCAGTCACCTCCATCAACCTCCCTAACTCCGATCTCTCTGGTCCTTTCCCCGTCTCCCTCTGCCGTCTCCCTCATCTCTCCCATCTCTCCCTCCCCAACAACAACCTTAACTCCACTCTCCCCACCACCATCTCCACTTGCATCACTCTCCGCCATCTTAACCTCTCCCTCAACCTCTTCTCCGGCAATATCCCTCACACTCTCTCTGACCTCCCTATCGAAGAACTCGACCTTTCCTTCAACAACTTCTCCGGCAACATCCCACAAACCTTCAGCAACTTCCAACAACTCCAAACAATCTCTCTCGTCAACAACCTCTTAACCGGAACAATACCTTCCTCTCTAAGCAATGTTTCATCTCTTAAGCACCTTCATCTCGCTTACAACAACTTCCTCCCCGGAACAATACCTTCTTCTCTCGGAAACCTCACCAACCTTGAAACTCTATGGCTTGCTGGTTGCAACCTTGTTGGTTTTATTCCAAATTCTTTTCGAAAACTTGTTCATCTTAAGAATCTTGATTTGTCCCGGAACATGCTCAACGGAACTATACCAGAACTTGTTATAGCAAGTTTAACCAGCATTGTTCAACTTGAGCTTTACACAAACTCTTTCTCCGGCGCGCTACCACGTTTAGGATTATCAAATTTGACTCGTTTGGAAAGATTTGATGCTTCGGATAACGAGTTAACTGGGGCTATTCCTGATGAGTTGTGTCGTTTGAAGAATCTGGGGTCTCTTGGTTTGTACTATAACCGACTCGAGGGTTCTCTGCCAGAGAGTTTAGCGTCGTCGGAGAGTTTATACGAGCTTCTTTTGTTCAACAACACACTCTCAGGGAAGTTGCCGAGTGGTTTGGGAAGTAACTCAAGGCTGCAGTTGATTGATGTTTCGTTTAATCGTTTTTCTGGTGAGATTCCGGCAGGTCTGTGTCGGCAGGGAAGGTTAGAGGAGTTGTTATTGATTAATAATTTGTTTTCCGGGGAAATTCCGGCAAGTCTTGGAAACTGTTTGAGCTTAACAAGAGTTAGACTTGGGAACAATAATCTCTCTGGTGTTGTTCCTTCTGGTTTTTGGGGTTTGCCTCATGTGTATCTACTTGAGCTTGTAGAAAATTCACTTTCTGGGCCTATTTCCAATTCAATATCAGGAGCCAGTAATCTTTCAATTTTGTTGATTTCTGGGAATAGGATTAATGGATCAATTCCTGATTCAATTGGGTCATTGTCCAATCTTGGAGAGTTTGTTGCTAGCAGTAATAGTCTTACCGGTCCAATTCCGACCGGTATGGTTAAATTAAGCCAGTTGAATAGGCTTGTTCTTAGGGATAATCAATTTTCTGGTGAGATTCCTCATGGTGTTGGTGATTGGAAGAAGCTTAATGATCTTGATTTGGCTAATAATAGGATTGTTGGTAATATTCCTAGTGAATTAGGAACCTTGCCAGCTCTTAATTTTCTTGATCTTTCTGGTAATTTACTTTCTGGTGAAATTCCAATGGAGTTGCAGAATTTGAAGCTTGATTTTTTTAACTTGTCAAATAATCAGCTTTCTGGAGAAATTCCTCCTCTTTATGCTAATGAGAATTATAGGGATAGTTTTGTAGGAAATATTGGTCTCTGTGGCGATATCTATGGATTGTGTCCAAATTTGGGTGAGAAAGATAAGAATAGGAGCTATGTGTGGGTTTTCAGGTTCATATTTGTACTTACTGGTGCTGTGTTAATTGTTGGGTTGACATGGTTTTACTTCAAATTCCAGAATTTCAAGAAGATGAAGAAAGGATTCAGTATACCGAAGTGGAGGTCGTTTCATAAACTAGGCTTTAGCGAGTTTGAGATTGTTAAATTGATGAGTGAAGATAACGTGATAGGCAGCGGATCTTCTGGGAAGGTTTACAAAGTGGTGTTGAGTAATGGAGAGGCAGTGGCAGTGAAGAAATTGTGGGGAGCAGCAACTAAGATAGAAAGTGGAAATGTTGAGGACCCTGAAAAGGATGAATTTGAAGTTGAAGTTGAAACATTGGGAAAGATTAGGCACAAGAATATTGTAAGGTTATGGTGTTGTTATAACAGTGGAGATAGTAAACTCTTAGTTTATGAGTACATGCCAAATGGAAGTTTGGCTGATTTGTTGCATAGTAGCAAGAAGAATTTGTTGGATTGGCCAACTAGACTTAAAATTGCTCTTGATGCTGCTGAGGGACTTTCTTATTTGCATCATGATTGTGTTGTTCCTATTGTTCATAGAGATGTAAAATCTAGCAATATTTTACTAGATGGAGAATTTGGTGCAAAAATTGCTGATTTTGGAGTGGCTAAATTTGTTAGAAGTGTTAGCAAAGGGACAGAAGAACCCATGTCAATGATTGCAGGATCTTGTGGTTACATTGCACCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGACATTTATAGCTTTGGAGTAGTGATTTTGGAGTTAGTAACTGGAAAACACCCTATTGATCAAGAGTATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCCAAATTGAATGAGGAAGGTCAAGATCAAGTGATTGATCCAAATCTTGATTCTAAATACAAGGAAGAAATAAGCAAAGTACTCAAGGTGGGGATTCTTTGCACAAGCTCTCTTCCCATAAACCGTCCTTCAATGCGCAGAGTGGTGAATATGCTGCAGGAAGTAACAGCAGTTATCAAGTCCAGAAGTGGAAAATTCTCTCCTTACTATCAAGAAGTAGTCTCTAATAATGATCATTTAGAAGCATAG

Protein sequence

>Msa0220920

MVEPLFIMLLFLFLSLISPTLSLNQEGLFLLQAKLHLSDPSNTLSNWNPNDSSPCNWTGILCNNLTNSVTSINLPNSDLSGPFPVSLCRLPHLSHLSLPNNNLNSTLPTTISTCITLRHLNLSLNLFSGNIPHTLSDLPIEELDLSFNNFSGNIPQTFSNFQQLQTISLVNNLLTGTIPSSLSNVSSLKHLHLAYNNFLPGTIPSSLGNLTNLETLWLAGCNLVGFIPNSFRKLVHLKNLDLSRNMLNGTIPELVIASLTSIVQLELYTNSFSGALPRLGLSNLTRLERFDASDNELTGAIPDELCRLKNLGSLGLYYNRLEGSLPESLASSESLYELLLFNNTLSGKLPSGLGSNSRLQLIDVSFNRFSGEIPAGLCRQGRLEELLLINNLFSGEIPASLGNCLSLTRVRLGNNNLSGVVPSGFWGLPHVYLLELVENSLSGPISNSISGASNLSILLISGNRINGSIPDSIGSLSNLGEFVASSNSLTGPIPTGMVKLSQLNRLVLRDNQFSGEIPHGVGDWKKLNDLDLANNRIVGNIPSELGTLPALNFLDLSGNLLSGEIPMELQNLKLDFFNLSNNQLSGEIPPLYANENYRDSFVGNIGLCGDIYGLCPNLGEKDKNRSYVWVFRFIFVLTGAVLIVGLTWFYFKFQNFKKMKKGFSIPKWRSFHKLGFSEFEIVKLMSEDNVIGSGSSGKVYKVVLSNGEAVAVKKLWGAATKIESGNVEDPEKDEFEVEVETLGKIRHKNIVRLWCCYNSGDSKLLVYEYMPNGSLADLLHSSKKNLLDWPTRLKIALDAAEGLSYLHHDCVVPIVHRDVKSSNILLDGEFGAKIADFGVAKFVRSVSKGTEEPMSMIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKDLVKWVSSKLNEEGQDQVIDPNLDSKYKEEISKVLKVGILCTSSLPINRPSMRRVVNMLQEVTAVIKSRSGKFSPYYQEVVSNNDHLEA*