AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833530 MtrunA17_Chr5g0398751 99.320 147 1 0 1 147 1 147 1.99e-105 297
Msa0833530 MtrunA17_Chr6g0460211 51.007 149 71 1 1 147 1 149 3.18e-49 155
Msa0833530 MtrunA17_Chr7g0254731 50.336 149 72 1 1 147 1 149 9.60e-49 154
Msa0833530 MtrunA17_Chr5g0440931 50.336 149 72 1 1 147 1 149 1.54e-48 153
Msa0833530 MtrunA17_Chr3g0093271 50.336 149 72 1 1 147 52 200 2.74e-47 151
Msa0833530 MtrunA17_Chr1g0166281 42.568 148 83 1 1 146 1 148 3.27e-40 132
Msa0833530 MtrunA17_Chr1g0188171 40.541 148 86 1 1 146 1 148 6.18e-38 126
Msa0833530 MtrunA17_Chr1g0185001 36.054 147 91 2 1 145 1 146 4.66e-30 106
Msa0833530 MtrunA17_Chr8g0366401 36.170 141 85 3 5 140 10 150 3.81e-25 94.4
Msa0833530 MtrunA17_Chr7g0274101 36.486 148 92 1 1 146 1 148 1.16e-24 92.4
Msa0833530 MtrunA17_Chr1g0161211 33.824 136 88 1 13 146 47 182 3.80e-20 82.0
Msa0833530 MtrunA17_Chr3g0100541 37.931 145 69 3 1 141 41 168 3.50e-19 79.3
Msa0833530 MtrunA17_Chr8g0391691 33.846 130 84 1 13 140 37 166 4.22e-19 79.3
Msa0833530 MtrunA17_Chr7g0245231 30.282 142 97 1 5 144 23 164 4.41e-19 79.0
Msa0833530 MtrunA17_Chr4g0062221 31.915 141 92 2 8 144 7 147 9.49e-19 77.8
Msa0833530 MtrunA17_Chr6g0450921 31.343 134 90 1 13 144 30 163 2.38e-18 77.0
Msa0833530 MtrunA17_Chr7g0267751 29.452 146 98 3 1 144 429 571 3.74e-18 80.1
Msa0833530 MtrunA17_Chr4g0059951 32.192 146 96 2 1 144 367 511 4.54e-18 79.7
Msa0833530 MtrunA17_Chr1g0200601 30.986 142 93 3 5 144 328 466 6.97e-18 79.0
Msa0833530 MtrunA17_Chr5g0434951 33.566 143 85 4 7 145 2 138 1.06e-17 74.3
Msa0833530 MtrunA17_Chr1g0176751 30.822 146 96 3 1 144 418 560 2.52e-17 77.4
Msa0833530 MtrunA17_Chr8g0392951 33.333 135 85 2 13 144 25 157 1.10e-16 72.4
Msa0833530 MtrunA17_Chr8g0368681 29.452 146 98 3 6 147 6 150 6.54e-16 70.5
Msa0833530 MtrunA17_Chr1g0169581 30.657 137 91 2 13 145 5 141 1.49e-15 68.9
Msa0833530 MtrunA17_Chr7g0242561 30.986 142 95 2 5 144 354 494 2.02e-15 72.0
Msa0833530 MtrunA17_Chr5g0409441 28.889 135 94 1 8 140 18 152 2.10e-15 68.9
Msa0833530 MtrunA17_Chr6g0482731 32.624 141 85 4 13 147 27 163 2.53e-15 68.9
Msa0833530 MtrunA17_Chr3g0098951 32.237 152 94 3 1 144 377 527 3.32e-15 71.2
Msa0833530 MtrunA17_Chr1g0170281 27.397 146 101 3 1 144 412 554 6.96e-15 70.5
Msa0833530 MtrunA17_Chr3g0131181 28.169 142 97 3 5 144 327 465 9.93e-15 70.1
Msa0833530 MtrunA17_Chr4g0074811 32.653 147 93 4 1 144 385 528 1.24e-14 69.7
Msa0833530 MtrunA17_Chr8g0385341 28.873 142 96 3 5 144 328 466 1.39e-14 69.7
Msa0833530 MtrunA17_Chr3g0100511 34.752 141 79 3 1 141 41 168 1.66e-14 67.0
Msa0833530 MtrunA17_Chr5g0448721 28.082 146 100 3 1 144 390 532 1.94e-14 69.3
Msa0833530 MtrunA17_Chr1g0157131 30.822 146 97 3 1 144 368 511 2.01e-14 69.3
Msa0833530 MtrunA17_Chr5g0444171 31.507 146 96 3 1 144 386 529 2.50e-14 68.9
Msa0833530 MtrunA17_Chr3g0111371 29.104 134 89 2 13 144 6 135 3.91e-14 65.1
Msa0833530 MtrunA17_Chr4g0033601 30.435 138 92 2 11 144 4 141 1.14e-13 64.3
Msa0833530 MtrunA17_Chr1g0173541 29.167 144 99 2 5 146 350 492 1.40e-13 66.6
Msa0833530 MtrunA17_Chr3g0100561 33.333 141 81 3 1 141 41 168 5.05e-13 63.2
Msa0833530 MtrunA17_Chr5g0397101 30.137 146 98 3 1 144 360 503 5.34e-13 65.1
Msa0833530 MtrunA17_Chr1g0169621 25.153 163 93 1 13 146 5 167 5.90e-13 62.8
Msa0833530 MtrunA17_Chr7g0257751 29.054 148 102 2 1 146 352 498 7.52e-13 64.7
Msa0833530 MtrunA17_Chr7g0245911 31.973 147 85 4 11 144 46 190 8.72e-13 62.8
Msa0833530 MtrunA17_Chr8g0351681 30.405 148 93 3 7 144 44 191 2.20e-12 61.6
Msa0833530 MtrunA17_Chr5g0441691 28.873 142 97 3 5 144 366 505 2.34e-12 63.2
Msa0833530 MtrunA17_Chr0c02g0489761 30.282 142 95 3 5 144 376 515 2.35e-12 63.2
Msa0833530 MtrunA17_Chr8g0387671 28.767 146 100 3 1 144 360 503 4.41e-12 62.4
Msa0833530 MtrunA17_Chr3g0121191 31.538 130 81 2 11 140 92 213 4.57e-12 61.2
Msa0833530 MtrunA17_Chr4g0057651 31.538 130 80 4 16 140 10 135 1.07e-11 58.9
Msa0833530 MtrunA17_Chr4g0057661 31.538 130 80 4 16 140 10 135 1.19e-11 58.5
Msa0833530 MtrunA17_Chr7g0225921 27.778 144 94 3 8 145 2 141 1.37e-11 58.5
Msa0833530 MtrunA17_Chr3g0100471 44.000 75 40 1 1 73 41 115 1.96e-11 57.4
Msa0833530 MtrunA17_Chr4g0064231 30.719 153 85 4 13 145 65 216 3.39e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833530 AT1G12310.1 87.838 148 17 1 1 147 1 148 5.69e-93 266
Msa0833530 AT1G62820.1 83.784 148 23 1 1 147 1 148 9.25e-90 258
Msa0833530 AT5G21274.1 51.007 149 71 1 1 147 1 149 4.35e-49 155
Msa0833530 AT3G43810.1 51.007 149 71 1 1 147 1 149 4.39e-49 155
Msa0833530 AT3G56800.1 50.336 149 72 1 1 147 1 149 1.51e-48 153
Msa0833530 AT2G41110.1 50.336 149 72 1 1 147 1 149 1.51e-48 153
Msa0833530 AT2G27030.1 50.336 149 72 1 1 147 1 149 1.51e-48 153
Msa0833530 AT2G27030.3 50.336 149 72 1 1 147 1 149 3.80e-48 153
Msa0833530 AT1G66410.1 50.336 149 72 1 1 147 1 149 4.17e-48 152
Msa0833530 AT5G37780.1 50.336 149 72 1 1 147 1 149 4.17e-48 152
Msa0833530 AT3G43810.2 50.336 149 72 1 1 147 1 149 3.64e-47 152
Msa0833530 AT2G41110.2 46.584 161 72 2 1 147 1 161 6.96e-45 144
Msa0833530 AT5G37780.2 45.732 164 72 2 1 147 1 164 6.98e-44 142
Msa0833530 AT5G37780.3 42.857 175 72 2 1 147 1 175 6.85e-42 137
Msa0833530 AT1G66410.2 47.170 159 72 2 1 147 1 159 9.89e-42 136
Msa0833530 AT3G22930.1 40.972 144 83 1 4 145 27 170 2.45e-38 128
Msa0833530 AT4G14640.1 40.559 143 83 1 5 145 6 148 3.56e-38 127
Msa0833530 AT5G37780.4 48.387 124 62 1 26 147 13 136 9.20e-37 123
Msa0833530 AT3G43810.4 48.673 113 56 1 37 147 1 113 9.45e-34 115
Msa0833530 AT3G43810.3 48.673 113 56 1 37 147 1 113 9.45e-34 115
Msa0833530 AT1G66410.4 48.673 113 56 1 37 147 1 113 2.03e-33 114
Msa0833530 AT1G66410.3 48.673 113 56 1 37 147 1 113 2.03e-33 114
Msa0833530 AT2G41100.7 38.554 166 83 3 1 147 55 220 1.48e-28 106
Msa0833530 AT2G41100.7 29.688 128 72 3 36 145 1 128 7.31e-12 61.6
Msa0833530 AT2G41100.6 38.554 166 83 3 1 147 55 220 1.48e-28 106
Msa0833530 AT2G41100.6 29.688 128 72 3 36 145 1 128 7.31e-12 61.6
Msa0833530 AT2G41100.3 38.554 166 83 3 1 147 55 220 1.48e-28 106
Msa0833530 AT2G41100.3 29.688 128 72 3 36 145 1 128 7.31e-12 61.6
Msa0833530 AT2G41100.4 38.554 166 83 3 1 147 90 255 2.65e-28 106
Msa0833530 AT2G41100.4 33.742 163 90 3 1 145 1 163 4.80e-24 95.1
Msa0833530 AT2G41100.1 38.554 166 83 3 1 147 90 255 2.65e-28 106
Msa0833530 AT2G41100.1 33.742 163 90 3 1 145 1 163 4.80e-24 95.1
Msa0833530 AT4G14640.2 36.885 122 75 1 26 145 9 130 4.37e-28 101
Msa0833530 AT2G41090.1 36.242 149 90 2 1 147 1 146 3.47e-25 95.5
Msa0833530 AT4G14640.3 42.718 103 57 1 5 105 6 108 1.17e-24 92.0
Msa0833530 AT3G22930.2 40.777 103 59 1 4 104 27 129 1.06e-22 87.4
Msa0833530 AT3G51920.1 31.081 148 100 1 1 146 1 148 8.33e-21 83.2
Msa0833530 AT1G32250.1 31.081 148 94 3 1 140 5 152 1.54e-20 82.8
Msa0833530 AT3G50360.1 30.282 142 97 1 5 144 20 161 1.15e-19 80.5
Msa0833530 AT4G37010.1 31.690 142 95 1 5 144 20 161 2.96e-19 79.3
Msa0833530 AT4G37010.2 31.690 142 95 1 5 144 24 165 3.24e-19 79.3
Msa0833530 AT1G24620.1 33.813 139 90 1 9 145 34 172 1.19e-18 78.6
Msa0833530 AT1G76040.1 32.877 146 94 3 1 144 167 310 4.90e-18 79.0
Msa0833530 AT1G76040.4 32.877 146 94 3 1 144 167 310 4.90e-18 79.0
Msa0833530 AT3G03000.1 33.103 145 94 2 5 146 13 157 7.28e-18 75.9
Msa0833530 AT1G76040.2 32.877 146 94 3 1 144 405 548 9.17e-18 79.3
Msa0833530 AT2G41100.2 36.923 130 63 3 37 147 1 130 1.20e-17 75.9
Msa0833530 AT1G18530.1 33.103 145 92 3 7 147 2 145 1.65e-17 74.7
Msa0833530 AT1G74740.1 34.228 149 93 4 1 146 353 499 2.11e-17 78.2
Msa0833530 AT1G35670.1 32.394 142 91 3 5 144 324 462 2.81e-17 77.8
Msa0833530 AT4G09570.1 31.690 142 92 3 5 144 323 461 9.41e-17 76.3
Msa0833530 AT1G66400.1 31.579 152 97 3 1 145 1 152 1.83e-16 72.0
Msa0833530 AT5G23580.1 29.452 146 98 3 1 144 316 458 1.27e-15 73.2
Msa0833530 AT4G38230.1 28.767 146 99 3 1 144 174 316 1.38e-15 72.4
Msa0833530 AT4G38230.4 28.767 146 99 3 1 144 318 460 1.40e-15 72.8
Msa0833530 AT4G38230.3 28.767 146 99 3 1 144 318 460 1.40e-15 72.8
Msa0833530 AT4G38230.2 28.767 146 99 3 1 144 348 490 1.54e-15 72.8
Msa0833530 AT4G21940.1 32.192 146 95 3 1 144 395 538 7.06e-15 70.9
Msa0833530 AT4G21940.2 32.192 146 95 3 1 144 395 538 7.79e-15 70.9
Msa0833530 AT2G17290.1 28.082 146 100 3 1 144 379 521 8.13e-15 70.9
Msa0833530 AT2G17290.2 28.082 146 100 3 1 144 379 521 8.13e-15 70.9
Msa0833530 AT3G10660.2 28.767 146 99 3 1 144 480 622 9.14e-15 70.5
Msa0833530 AT3G10660.1 28.767 146 99 3 1 144 480 622 9.14e-15 70.5
Msa0833530 AT1G18210.2 29.323 133 92 1 13 145 24 154 1.63e-14 67.4
Msa0833530 AT1G18210.1 29.323 133 92 1 13 145 24 154 1.63e-14 67.4
Msa0833530 AT4G35310.2 28.767 146 99 3 1 144 391 533 2.27e-14 69.3
Msa0833530 AT4G35310.1 28.767 146 99 3 1 144 391 533 2.27e-14 69.3
Msa0833530 AT5G04870.1 27.397 146 101 3 1 144 444 586 4.37e-14 68.6
Msa0833530 AT3G57530.1 31.333 150 91 4 1 144 357 500 6.10e-14 68.2
Msa0833530 AT2G38910.1 28.767 146 99 3 1 144 428 570 1.58e-13 67.0
Msa0833530 AT3G20410.2 29.452 146 99 3 1 144 385 528 1.85e-13 67.0
Msa0833530 AT3G20410.1 29.452 146 99 3 1 144 385 528 1.85e-13 67.0
Msa0833530 AT2G41860.1 30.137 146 99 2 1 144 348 492 2.11e-13 66.6
Msa0833530 AT2G41860.2 30.137 146 99 2 1 144 348 492 2.22e-13 66.6
Msa0833530 AT1G05990.1 30.216 139 92 3 11 144 4 142 2.25e-13 63.9
Msa0833530 AT4G23650.1 29.452 146 99 3 1 144 372 515 4.70e-13 65.5
Msa0833530 AT2G43290.1 29.861 144 90 4 11 144 64 206 4.92e-13 64.3
Msa0833530 AT3G25600.1 29.167 144 97 3 8 147 8 150 6.49e-13 62.8
Msa0833530 AT2G15680.1 27.465 142 99 2 5 144 43 182 6.72e-13 63.2
Msa0833530 AT3G59440.1 31.884 138 85 4 13 144 52 186 9.38e-13 63.2
Msa0833530 AT4G03290.1 29.927 137 89 3 11 140 4 140 1.75e-12 61.6
Msa0833530 AT5G19360.1 30.282 142 95 3 5 144 366 505 1.86e-12 63.9
Msa0833530 AT1G73630.1 26.866 134 92 2 13 144 21 150 2.78e-12 61.2
Msa0833530 AT1G18890.1 28.859 149 101 4 1 146 357 503 2.84e-12 63.5
Msa0833530 AT5G12480.1 28.289 152 99 4 1 146 353 500 3.30e-12 63.2
Msa0833530 AT5G12480.2 28.289 152 99 4 1 146 259 406 4.06e-12 62.8
Msa0833530 AT1G50700.1 28.082 146 101 3 1 144 367 510 4.31e-12 62.8
Msa0833530 AT4G04720.2 29.452 146 99 3 1 144 373 516 9.71e-12 62.0
Msa0833530 AT4G04720.1 29.452 146 99 3 1 144 373 516 9.71e-12 62.0
Msa0833530 AT3G03400.1 29.231 130 88 3 12 137 5 134 1.33e-11 58.9
Msa0833530 AT3G51850.1 28.873 142 98 2 5 144 352 492 1.98e-11 60.8
Msa0833530 AT5G12180.1 28.873 142 97 3 5 144 371 510 2.99e-11 60.5
Msa0833530 AT2G41100.5 36.923 65 41 0 83 147 12 76 4.60e-11 57.8
Msa0833530 AT4G12860.1 28.986 138 90 3 13 144 6 141 5.52e-11 57.4
Msa0833530 AT5G37770.1 26.087 138 96 2 13 144 18 155 6.81e-11 57.4
Msa0833530 AT5G37770.2 26.087 138 96 2 13 144 18 155 6.81e-11 57.4

Find 35 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGACGATCGAACGGTTC+AGG 0.312022 5_4:-6686326 None:intergenic
CGATGGATTTGAGTTGGGCT+TGG 0.312614 5_4:-6686232 None:intergenic
CGGTTCAGGTTTCATGTGTT+TGG 0.324663 5_4:-6686312 None:intergenic
CTGAGTTTGATGAATGGATT+AGG 0.334899 5_4:+6686450 Msa0833530:CDS
CGGCGACGATGGATTTGAGT+TGG 0.406400 5_4:-6686238 None:intergenic
ATTTGAGTTGGGCTTGGGTC+GGG 0.416027 5_4:-6686226 None:intergenic
GATGGATTTGAGTTGGGCTT+GGG 0.428812 5_4:-6686231 None:intergenic
GATTTGAGTTGGGCTTGGGT+CGG 0.446248 5_4:-6686227 None:intergenic
GGCGACGATGGATTTGAGTT+GGG 0.459012 5_4:-6686237 None:intergenic
AACCGTTCGATCGTCAACTA+AGG 0.463624 5_4:+6686330 Msa0833530:CDS
GTTCTCGATAAAGATGCTAC+TGG 0.465422 5_4:+6686365 Msa0833530:CDS
GGATTAGGGAAGTTGATGTT+GGG 0.471509 5_4:+6686465 Msa0833530:CDS
AGCCTGCTGAGTTTGATGAA+TGG 0.478011 5_4:+6686444 Msa0833530:CDS
GAAGTTGATGTTGGGTCTGA+TGG 0.478332 5_4:+6686473 Msa0833530:CDS
TGAGTTTGATGAATGGATTA+GGG 0.481850 5_4:+6686451 Msa0833530:CDS
TGAAGATTTCATCGCTAGAA+TGG 0.494928 5_4:+6686508 Msa0833530:CDS
TGGATTAGGGAAGTTGATGT+TGG 0.508553 5_4:+6686464 Msa0833530:CDS
AGGGGAGGTTAGATTCTCTT+CGG 0.513129 5_4:-6686258 None:intergenic
ATCCATTCATCAAACTCAGC+AGG 0.514616 5_4:-6686446 None:intergenic
TAGATTCTCTTCGGCGACGA+TGG 0.518627 5_4:-6686249 None:intergenic
GGAATCCTCATGCGTTCTCT+CGG 0.535690 5_4:+6686197 Msa0833530:CDS
AAATCAAACGAAAATGGGTA+AGG 0.546646 5_4:+6686085 None:intergenic
AAGTTGATGTTGGGTCTGAT+GGG 0.550763 5_4:+6686474 Msa0833530:CDS
CGACGGCAAGATCGCACCAT+CGG 0.559292 5_4:+6686169 Msa0833530:CDS
GAAATCGAGAGAAATCGAAA+GGG 0.564111 5_4:-6686277 None:intergenic
AAGATCGCACCATCGGAGCT+CGG 0.573545 5_4:+6686176 Msa0833530:CDS
AGAAATCGAGAGAAATCGAA+AGG 0.584540 5_4:-6686278 None:intergenic
ATGAGGATTCCGAGCTCCGA+TGG 0.601818 5_4:-6686185 None:intergenic
ACCGTTCGATCGTCAACTAA+GGG 0.604940 5_4:+6686331 Msa0833530:CDS
TCCCTTAGTTGACGATCGAA+CGG 0.606994 5_4:-6686332 None:intergenic
ATCCTCATGCGTTCTCTCGG+CGG 0.614038 5_4:+6686200 Msa0833530:CDS
TACCGCCGAGAGAACGCATG+AGG 0.654227 5_4:-6686202 None:intergenic
TCGAGAGAAATCGAAAGGGG+AGG 0.668937 5_4:-6686273 None:intergenic
AAATCGAGAGAAATCGAAAG+GGG 0.678072 5_4:-6686276 None:intergenic
CTCTTCGACACAGACAACGA+CGG 0.710491 5_4:+6686152 Msa0833530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGTTTGATGAATGGATTA+GGG + chr5_4:6686451-6686470 Msa0833530:CDS 30.0%
AAATCGAGAGAAATCGAAAG+GGG - chr5_4:6686279-6686298 None:intergenic 35.0%
GAAATCGAGAGAAATCGAAA+GGG - chr5_4:6686280-6686299 None:intergenic 35.0%
AGAAATCGAGAGAAATCGAA+AGG - chr5_4:6686281-6686300 None:intergenic 35.0%
!!! CGTCATATTTTGACGAGTAT+TGG + chr5_4:6686410-6686429 Msa0833530:CDS 35.0%
! CTGAGTTTGATGAATGGATT+AGG + chr5_4:6686450-6686469 Msa0833530:CDS 35.0%
TGAAGATTTCATCGCTAGAA+TGG + chr5_4:6686508-6686527 Msa0833530:CDS 35.0%
GTTCTCGATAAAGATGCTAC+TGG + chr5_4:6686365-6686384 Msa0833530:CDS 40.0%
ATCCATTCATCAAACTCAGC+AGG - chr5_4:6686449-6686468 None:intergenic 40.0%
!! TGGATTAGGGAAGTTGATGT+TGG + chr5_4:6686464-6686483 Msa0833530:CDS 40.0%
!! GGATTAGGGAAGTTGATGTT+GGG + chr5_4:6686465-6686484 Msa0833530:CDS 40.0%
!! AAGTTGATGTTGGGTCTGAT+GGG + chr5_4:6686474-6686493 Msa0833530:CDS 40.0%
!! GATGGATTTGAGTTGGGCTT+GGG - chr5_4:6686234-6686253 None:intergenic 45.0%
AGGGGAGGTTAGATTCTCTT+CGG - chr5_4:6686261-6686280 None:intergenic 45.0%
! CGGTTCAGGTTTCATGTGTT+TGG - chr5_4:6686315-6686334 None:intergenic 45.0%
AACCGTTCGATCGTCAACTA+AGG + chr5_4:6686330-6686349 Msa0833530:CDS 45.0%
ACCGTTCGATCGTCAACTAA+GGG + chr5_4:6686331-6686350 Msa0833530:CDS 45.0%
TCCCTTAGTTGACGATCGAA+CGG - chr5_4:6686335-6686354 None:intergenic 45.0%
AGCCTGCTGAGTTTGATGAA+TGG + chr5_4:6686444-6686463 Msa0833530:CDS 45.0%
!! GAAGTTGATGTTGGGTCTGA+TGG + chr5_4:6686473-6686492 Msa0833530:CDS 45.0%
CTCTTCGACACAGACAACGA+CGG + chr5_4:6686152-6686171 Msa0833530:CDS 50.0%
GGAATCCTCATGCGTTCTCT+CGG + chr5_4:6686197-6686216 Msa0833530:CDS 50.0%
!! ATTTGAGTTGGGCTTGGGTC+GGG - chr5_4:6686229-6686248 None:intergenic 50.0%
!! GATTTGAGTTGGGCTTGGGT+CGG - chr5_4:6686230-6686249 None:intergenic 50.0%
!! CGATGGATTTGAGTTGGGCT+TGG - chr5_4:6686235-6686254 None:intergenic 50.0%
! GGCGACGATGGATTTGAGTT+GGG - chr5_4:6686240-6686259 None:intergenic 50.0%
TAGATTCTCTTCGGCGACGA+TGG - chr5_4:6686252-6686271 None:intergenic 50.0%
TCGAGAGAAATCGAAAGGGG+AGG - chr5_4:6686276-6686295 None:intergenic 50.0%
AGTTGACGATCGAACGGTTC+AGG - chr5_4:6686329-6686348 None:intergenic 50.0%
AAGATCGCACCATCGGAGCT+CGG + chr5_4:6686176-6686195 Msa0833530:CDS 55.0%
ATGAGGATTCCGAGCTCCGA+TGG - chr5_4:6686188-6686207 None:intergenic 55.0%
ATCCTCATGCGTTCTCTCGG+CGG + chr5_4:6686200-6686219 Msa0833530:CDS 55.0%
! CGGCGACGATGGATTTGAGT+TGG - chr5_4:6686241-6686260 None:intergenic 55.0%
CGACGGCAAGATCGCACCAT+CGG + chr5_4:6686169-6686188 Msa0833530:CDS 60.0%
TACCGCCGAGAGAACGCATG+AGG - chr5_4:6686205-6686224 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6686098 6686541 6686098 ID=Msa0833530;Name=Msa0833530
chr5_4 mRNA 6686098 6686541 6686098 ID=Msa0833530-mRNA-1;Parent=Msa0833530;Name=Msa0833530-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|147
chr5_4 exon 6686098 6686541 6686098 ID=Msa0833530-mRNA-1:exon:2898;Parent=Msa0833530-mRNA-1
chr5_4 CDS 6686098 6686541 6686098 ID=Msa0833530-mRNA-1:cds;Parent=Msa0833530-mRNA-1
Gene Sequence

>Msa0833530

ATGGGTAAGGATCTGAGCGACGATCAAATCTCATCAATGAAAGAAGCATTCACACTCTTCGACACAGACAACGACGGCAAGATCGCACCATCGGAGCTCGGAATCCTCATGCGTTCTCTCGGCGGTAACCCGACCCAAGCCCAACTCAAATCCATCGTCGCCGAAGAGAATCTAACCTCCCCTTTCGATTTCTCTCGATTTCTCGATCTCATGTCCAAACACATGAAACCTGAACCGTTCGATCGTCAACTAAGGGATGCGTTCAAAGTTCTCGATAAAGATGCTACTGGATTTGTTTCTGTCAATGAGCTTCGTCATATTTTGACGAGTATTGGTGAGAAGCTTGAGCCTGCTGAGTTTGATGAATGGATTAGGGAAGTTGATGTTGGGTCTGATGGGAAGATTCGTTATGAAGATTTCATCGCTAGAATGGTTGCGAAGTGA
Protein sequence

>Msa0833530

MGKDLSDDQISSMKEAFTLFDTDNDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFSRFLDLMSKHMKPEPFDRQLRDAFKVLDKDATGFVSVNELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK*