AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017670 MtrunA17_Chr1g0151961 96.144 389 4 4 1 388 1 379 0.0 765
Msa0017670 MtrunA17_Chr2g0289201 58.730 252 90 3 128 375 117 358 3.36e-89 274
Msa0017670 MtrunA17_Chr5g0413201 48.377 308 146 4 64 365 8 308 9.30e-86 263
Msa0017670 MtrunA17_Chr5g0439391 55.187 241 94 3 128 364 46 276 2.20e-71 225
Msa0017670 MtrunA17_Chr1g0192791 48.413 252 117 4 128 371 19 265 8.07e-70 220
Msa0017670 MtrunA17_Chr2g0305101 33.463 257 149 5 117 351 83 339 1.39e-37 139
Msa0017670 MtrunA17_Chr1g0149651 32.342 269 151 6 114 351 152 420 2.90e-35 134
Msa0017670 MtrunA17_Chr5g0398181 31.418 261 139 5 124 351 23 276 9.25e-34 127
Msa0017670 MtrunA17_Chr3g0137241 31.724 290 153 9 105 351 68 355 2.00e-33 128
Msa0017670 MtrunA17_Chr4g0065241 32.800 250 146 5 124 351 66 315 2.97e-33 127
Msa0017670 MtrunA17_Chr7g0240371 39.726 73 42 1 281 353 296 366 1.07e-11 66.2
Msa0017670 MtrunA17_Chr4g0008591 43.243 74 39 2 280 353 351 421 1.35e-11 66.2
Msa0017670 MtrunA17_Chr4g0025521 50.909 55 27 0 299 353 409 463 3.53e-11 65.1
Msa0017670 MtrunA17_Chr3g0141941 37.000 100 55 4 254 353 315 406 5.85e-11 63.9
Msa0017670 MtrunA17_Chr1g0155681 49.091 55 28 0 299 353 363 417 9.87e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017670 AT4G08150.1 70.501 339 76 8 58 388 76 398 2.61e-155 443
Msa0017670 AT1G62360.1 57.037 270 105 3 104 367 95 359 1.03e-89 276
Msa0017670 AT1G23380.1 56.904 239 96 3 127 363 84 317 5.83e-85 261
Msa0017670 AT1G23380.2 56.432 241 96 4 127 363 84 319 6.08e-83 256
Msa0017670 AT1G70510.1 53.165 237 108 1 127 363 68 301 1.72e-78 244
Msa0017670 AT1G70510.2 52.282 241 108 2 127 363 68 305 3.31e-76 239
Msa0017670 AT5G25220.2 33.700 273 143 8 114 351 134 403 1.62e-35 135
Msa0017670 AT5G25220.1 33.700 273 143 8 114 351 134 403 2.13e-35 135
Msa0017670 AT1G62990.1 30.996 271 146 7 113 351 14 275 2.62e-35 131
Msa0017670 AT5G11060.1 33.603 247 137 7 129 351 124 367 1.04e-33 129
Msa0017670 AT4G32040.2 30.242 248 144 4 129 351 119 362 1.57e-32 126
Msa0017670 AT4G32040.1 30.242 248 144 4 129 351 119 362 1.63e-32 126
Msa0017670 AT1G19700.1 50.909 55 27 0 299 353 358 412 4.58e-11 64.7
Msa0017670 AT1G19700.3 50.909 55 27 0 299 353 358 412 4.58e-11 64.7
Msa0017670 AT1G19700.5 50.909 55 27 0 299 353 358 412 4.58e-11 64.7
Msa0017670 AT1G19700.4 50.909 55 27 0 299 353 358 412 4.58e-11 64.7
Msa0017670 AT1G19700.2 50.909 55 27 0 299 353 358 412 4.58e-11 64.7
Msa0017670 AT1G75430.1 49.091 55 28 0 299 353 209 263 6.42e-11 63.2
Msa0017670 AT2G27220.1 49.091 55 28 0 299 353 235 289 6.55e-11 63.9
Msa0017670 AT2G27220.3 49.091 55 28 0 299 353 235 289 6.55e-11 63.9
Msa0017670 AT2G27220.2 49.091 55 28 0 299 353 253 307 9.10e-11 63.5

Find 141 sgRNAs with CRISPR-Local

Find 676 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATAATGAATGAAATTT+AGG 0.118791 1_1:-29511090 None:intergenic
CTACACACACGACTCATTTA+AGG 0.124114 1_1:-29522686 None:intergenic
TGATTGGAGCTTATAGATTT+TGG 0.131806 1_1:-29510970 None:intergenic
TTTCTTAAATTTGAGTTAAA+TGG 0.150949 1_1:+29511273 Msa0017670:exon
TAACTTTAGTTTGTGGTATT+TGG 0.189589 1_1:+29522709 Msa0017670:three_prime_UTR
CTTGAACTTTGATTTGAATT+TGG 0.198147 1_1:-29511325 None:intergenic
ATCAGAAGACATGCAGTTTA+TGG 0.215872 1_1:+29522078 Msa0017670:CDS
CTCTCAACTTCTTAAACTTT+TGG 0.237850 1_1:+29511004 Msa0017670:five_prime_UTR
GTGTGTTGTGTTGGGGTAAA+GGG 0.238665 1_1:-29511045 None:intergenic
AACAATTAATATGGTCACTA+TGG 0.246085 1_1:-29522510 None:intergenic
TATATAAACAATCTCAAATA+TGG 0.248994 1_1:+29511106 Msa0017670:five_prime_UTR
CTTTGATTTGAATTTGGATT+TGG 0.263194 1_1:-29511319 None:intergenic
AGTTAAACGTATATGGTATT+TGG 0.269110 1_1:+29511246 Msa0017670:five_prime_UTR
CATTATATGTTACTCTTTGT+TGG 0.270999 1_1:+29522603 Msa0017670:three_prime_UTR
GCTGATGGTCCCTACCGTTT+AGG 0.271349 1_1:+29522157 Msa0017670:CDS
CAACTCAATTCTCAAAATAT+AGG 0.276065 1_1:-29511215 None:intergenic
ACCAGTTATTTATTTGCTTC+TGG 0.277102 1_1:-29522024 None:intergenic
TTGAGGATGAGCAATGATTT+TGG 0.278077 1_1:-29511680 None:intergenic
GCAATGGAGTACAAGAAATT+TGG 0.293232 1_1:-29511349 None:intergenic
TATATAATGAATGAAATTTA+GGG 0.294647 1_1:-29511089 None:intergenic
TTTGAATTTGGATTTGGATT+TGG 0.320735 1_1:-29511313 None:intergenic
TGTGTGTTGTGTTGGGGTAA+AGG 0.320780 1_1:-29511046 None:intergenic
ACAGAGTGCAGCTCTTTATA+TGG 0.322707 1_1:+29522120 Msa0017670:CDS
TCTCCAAGACATTGCTGGTT+TGG 0.331109 1_1:+29510841 Msa0017670:five_prime_UTR
ACCATGAATTGGTCTAGTTC+TGG 0.338115 1_1:-29512118 None:intergenic
CTGATGGTCCCTACCGTTTA+GGG 0.343258 1_1:+29522158 Msa0017670:CDS
AACTCAATTCTCAAAATATA+GGG 0.344206 1_1:-29511214 None:intergenic
CTAGACAAAAGCTACTTAAT+TGG 0.349186 1_1:+29521339 Msa0017670:CDS
ACCAAACGAGCCACCACTTC+CGG 0.349272 1_1:-29512028 None:intergenic
GTGGTTGACAAGACTTTGTT+TGG 0.352682 1_1:-29510813 None:intergenic
ACCGGAAGTGGTGGCTCGTT+TGG 0.365361 1_1:+29512027 Msa0017670:CDS
TTAGTCCATTTCTCAAATTA+CGG 0.369191 1_1:-29522228 None:intergenic
AACTTTCATCTTCAATCAAA+TGG 0.370332 1_1:+29511439 Msa0017670:CDS
GTGAGAGAGTTAAACGTATA+TGG 0.372207 1_1:+29511239 Msa0017670:five_prime_UTR
TGAAGATGAAAGTTGTTCAT+TGG 0.383854 1_1:-29511430 None:intergenic
GATATATGAAGCGTTGATAC+TGG 0.384637 1_1:+29522191 Msa0017670:three_prime_UTR
GACAAAGAAAACAATTAATA+TGG 0.387956 1_1:-29522519 None:intergenic
CCCCATCTCCAAGACATTGC+TGG 0.392395 1_1:+29510836 Msa0017670:five_prime_UTR
GAGAGATGAGTGAAGATGAT+TGG 0.403579 1_1:-29510986 None:intergenic
ACCAGAAGCAAATAAATAAC+TGG 0.406580 1_1:+29522023 Msa0017670:CDS
ACTCTATAAAACAACAAAGT+AGG 0.412939 1_1:+29511178 Msa0017670:five_prime_UTR
ATTATAATATATAGTTTAAG+TGG 0.417051 1_1:+29522351 Msa0017670:three_prime_UTR
ACCAGCCGTAATTTGAGAAA+TGG 0.428135 1_1:+29522223 Msa0017670:three_prime_UTR
GAAAGGAAAATTACCTAAAG+AGG 0.441916 1_1:+29521316 Msa0017670:CDS
AAATCCATAGCCTCTTGTAT+AGG 0.443002 1_1:-29512387 None:intergenic
ATGATGATTATGCATAATAT+TGG 0.443654 1_1:-29511599 None:intergenic
GTTGGTGTTGGTGTTGGTGT+TGG 0.444222 1_1:-29511384 None:intergenic
GTAGCATTGGCTGAATCAAC+AGG 0.445109 1_1:+29521995 Msa0017670:CDS
TTACAAATGGCCTTATCCTT+CGG 0.445371 1_1:+29521373 Msa0017670:CDS
ATATTTGTTCTCATTAAAGC+TGG 0.445786 1_1:-29511565 None:intergenic
TGTTGATGTTGTACTTGATC+AGG 0.447416 1_1:-29511481 None:intergenic
GATTGTGTTGGTGTTGGTGT+TGG 0.454560 1_1:-29511390 None:intergenic
ATCATAATCATGGCCCTAAA+CGG 0.455352 1_1:-29522171 None:intergenic
GTTGATGATTGTGTTGGTGT+TGG 0.460652 1_1:-29511396 None:intergenic
ACCAGCAATGTCTTGGAGAT+GGG 0.461175 1_1:-29510837 None:intergenic
ATTGGCTGAATCAACAGGTT+TGG 0.461797 1_1:+29522000 Msa0017670:CDS
TGAACATTATCACCAATGTC+GGG 0.462343 1_1:+29522252 Msa0017670:three_prime_UTR
CAAATTCAAATCAAAGTTCA+AGG 0.464843 1_1:+29511326 Msa0017670:CDS
TTGGTTGTTTCCACTAGCAA+TGG 0.467119 1_1:-29511365 None:intergenic
TCCAGAACTAGACCAATTCA+TGG 0.475218 1_1:+29512117 Msa0017670:CDS
CTTAAATTTGAGTTAAATGG+AGG 0.479098 1_1:+29511276 Msa0017670:exon
AGTCCAAACCAGCAATGTCT+TGG 0.481339 1_1:-29510844 None:intergenic
CACTTTGCAATGGACCCCTT+CGG 0.484187 1_1:+29512439 Msa0017670:CDS
GGTGGGAATTGCATTACAAA+TGG 0.484691 1_1:+29521360 Msa0017670:CDS
ATTAGAGAGAGAAGAGAGAG+TGG 0.484964 1_1:-29510874 None:intergenic
CGCTTCATATATCATAATCA+TGG 0.486017 1_1:-29522181 None:intergenic
TCTGCTCGAGGATCAATCTC+TGG 0.491728 1_1:-29521209 None:intergenic
TTATAATATAATATATAAAA+CGG 0.497706 1_1:-29522335 None:intergenic
GACATGCATAACATGAAACT+TGG 0.498903 1_1:+29522453 Msa0017670:three_prime_UTR
ACCAATGTCGGGGTGGTGGT+TGG 0.501049 1_1:+29522263 Msa0017670:three_prime_UTR
GATTGGAGCTCCACCGGAAG+TGG 0.502488 1_1:+29512015 Msa0017670:intron
CTCTATAAAACAACAAAGTA+GGG 0.503637 1_1:+29511179 Msa0017670:five_prime_UTR
GGACCCCTTCGGATCTTCCC+TGG 0.503797 1_1:+29512450 Msa0017670:CDS
AACCAGCAATGTCTTGGAGA+TGG 0.505140 1_1:-29510838 None:intergenic
TCAATCAAAGGAAGAGGCAC+TGG 0.507111 1_1:+29522050 Msa0017670:CDS
TCCATTTCTCAAATTACGGC+TGG 0.507610 1_1:-29522224 None:intergenic
TGGTATTTGGAGTGCTCAGA+AGG 0.508759 1_1:+29522722 Msa0017670:three_prime_UTR
TTATAACGTACCGAAGGATA+AGG 0.509147 1_1:-29521383 None:intergenic
CACTATATTTCTTCAGCAAG+TGG 0.509181 1_1:-29521250 None:intergenic
GATTATGTTGATGATTGTGT+TGG 0.509559 1_1:-29511402 None:intergenic
GACAAAAGCTACTTAATTGG+TGG 0.509834 1_1:+29521342 Msa0017670:CDS
TTATATGGATGGTCATTACA+TGG 0.510806 1_1:+29522135 Msa0017670:CDS
TGTGTTGTGTTGGGGTAAAG+GGG 0.512230 1_1:-29511044 None:intergenic
AAGGCCTATACAAGAGGCTA+TGG 0.514686 1_1:+29512383 Msa0017670:CDS
TGGCTCGTTTGGTTGCGTCT+AGG 0.518848 1_1:+29512038 Msa0017670:CDS
AGCTTACATGGATTGTCAAA+AGG 0.519024 1_1:+29511720 Msa0017670:CDS
TTGAACATTATCACCAATGT+CGG 0.520681 1_1:+29522251 Msa0017670:three_prime_UTR
TTCTTGTACTCCATTGCTAG+TGG 0.520994 1_1:+29511355 Msa0017670:CDS
GAGGATCAAGAGAATAGTGG+TGG 0.527205 1_1:+29521170 Msa0017670:CDS
ACAATTAATATGGTCACTAT+GGG 0.527439 1_1:-29522509 None:intergenic
AATTCACGGTCTTCTGCTCG+AGG 0.528363 1_1:-29521221 None:intergenic
CATCATCATCAAGGAGGAGG+AGG 0.530576 1_1:+29511616 Msa0017670:CDS
GGGCATTGACAGGGTGGAGA+AGG 0.530619 1_1:-29510949 None:intergenic
CACTTGCTGAAGAAATATAG+TGG 0.533238 1_1:+29521251 Msa0017670:CDS
TAATATATAGTTTAAGTGGA+AGG 0.538110 1_1:+29522355 Msa0017670:three_prime_UTR
GAAGAGGATCAAGAGAATAG+TGG 0.545053 1_1:+29521167 Msa0017670:CDS
GCTTCACCACTAGAACTGCT+TGG 0.545490 1_1:-29511643 None:intergenic
TCCAACCACCACCCCGACAT+TGG 0.547179 1_1:-29522264 None:intergenic
TATGTAGATTGGAGCTCCAC+CGG 0.547316 1_1:+29512009 Msa0017670:intron
GGAATCAGAGAAGGTAGCAT+TGG 0.547951 1_1:+29521982 Msa0017670:intron
TATTTGTTCTCATTAAAGCT+GGG 0.551107 1_1:-29511564 None:intergenic
TATCACCAATGTCGGGGTGG+TGG 0.551798 1_1:+29522259 Msa0017670:three_prime_UTR
ATGCATAATCATCATCATCA+AGG 0.555030 1_1:+29511607 Msa0017670:CDS
ATAAACTGCATGTCTTCTGA+TGG 0.556878 1_1:-29522076 None:intergenic
AGACATGCAGTTTATGGTGA+TGG 0.558113 1_1:+29522084 Msa0017670:CDS
CAGCTAAATACACTTTGCAA+TGG 0.562110 1_1:+29512429 Msa0017670:CDS
TAATCATGGCCCTAAACGGT+AGG 0.564867 1_1:-29522167 None:intergenic
TGGAGCTCCACCGGAAGTGG+TGG 0.570424 1_1:+29512018 Msa0017670:CDS
GGTTCATCAATCAAAGGAAG+AGG 0.570775 1_1:+29522044 Msa0017670:CDS
CCAGCAATGTCTTGGAGATG+GGG 0.572717 1_1:-29510836 None:intergenic
TGTAAAAGACTAGAGTATTG+AGG 0.573212 1_1:-29511697 None:intergenic
TGTGTAGTAACTTTAGTTTG+TGG 0.577107 1_1:+29522702 Msa0017670:three_prime_UTR
AGTGCAGCTCTTTATATGGA+TGG 0.581356 1_1:+29522124 Msa0017670:CDS
AGAGAGAGAAGAGAGAGTGG+TGG 0.585750 1_1:-29510871 None:intergenic
GGGAGTCCAAGCAGTTCTAG+TGG 0.587384 1_1:+29511637 Msa0017670:CDS
ATAACTGGTTCATCAATCAA+AGG 0.592016 1_1:+29522038 Msa0017670:CDS
ACAAAAGCTACTTAATTGGT+GGG 0.596461 1_1:+29521343 Msa0017670:CDS
AATCATCATCATCAAGGAGG+AGG 0.600518 1_1:+29511613 Msa0017670:CDS
ACTCACCAGGGAAGATCCGA+AGG 0.608503 1_1:-29512455 None:intergenic
TTATCTTCAATATGAAGCGT+CGG 0.612636 1_1:+29522288 Msa0017670:three_prime_UTR
ATCATCATCAAGGAGGAGGA+GGG 0.622603 1_1:+29511617 Msa0017670:CDS
ATTAACAAGGCCTATACAAG+AGG 0.622954 1_1:+29512377 Msa0017670:CDS
AGGCGTTGGTTCATCAGAAG+AGG 0.623533 1_1:+29521151 Msa0017670:CDS
AATCATGGCCCTAAACGGTA+GGG 0.623950 1_1:-29522166 None:intergenic
ATGCAGTTTATGGTGATGGA+TGG 0.624056 1_1:+29522088 Msa0017670:CDS
ATATAAAGAGCTGCACTCTG+TGG 0.627158 1_1:-29522118 None:intergenic
AAACGAGCCACCACTTCCGG+TGG 0.627824 1_1:-29512025 None:intergenic
AGTTGTCACTACCAGAGTGT+AGG 0.636397 1_1:-29522580 None:intergenic
CAGCAATGTCTTGGAGATGG+GGG 0.638446 1_1:-29510835 None:intergenic
GATGGTCATTACATGGCTGA+TGG 0.643940 1_1:+29522142 Msa0017670:CDS
CACTATATAGGAATCAGAGA+AGG 0.647456 1_1:+29521973 Msa0017670:intron
CATGCTTGTGAAGTATAGAG+AGG 0.648293 1_1:+29512353 Msa0017670:CDS
CATTATCACCAATGTCGGGG+TGG 0.670905 1_1:+29522256 Msa0017670:three_prime_UTR
GAACATTATCACCAATGTCG+GGG 0.675009 1_1:+29522253 Msa0017670:three_prime_UTR
CTCACCAGGGAAGATCCGAA+GGG 0.678902 1_1:-29512454 None:intergenic
CTAGGCAAGAGTTTGAAGCA+AGG 0.689197 1_1:+29512056 Msa0017670:CDS
CATAATCATCATCATCAAGG+AGG 0.690149 1_1:+29511610 Msa0017670:CDS
AATTACGTACTCCTACACTC+TGG 0.700657 1_1:+29522569 Msa0017670:three_prime_UTR
TTATGCATAATATTGGTGTG+TGG 0.710252 1_1:-29511592 None:intergenic
AGTATAGAGAGGAATTAACA+AGG 0.714149 1_1:+29512364 Msa0017670:CDS
TCACCAGGGAAGATCCGAAG+GGG 0.724320 1_1:-29512453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATATAAAAAAAT+GGG - chr1_1:29511953-29511972 None:intergenic 0.0%
!! AAAATATATATATAAAAAAA+TGG - chr1_1:29511954-29511973 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTTTTTA+AGG + chr1_1:29513532-29513551 Msa0017670:intron 0.0%
!! AATTTAAAAATATATTATAA+AGG - chr1_1:29517320-29517339 None:intergenic 0.0%
!!! TAATTTTTTTTATATTTTTT+TGG - chr1_1:29518201-29518220 None:intergenic 0.0%
!! AATAATAAAAAATAAAAAAA+GGG - chr1_1:29519987-29520006 None:intergenic 0.0%
!! TTATAATATAATATATAAAA+CGG - chr1_1:29522338-29522357 None:intergenic 0.0%
!! TATATAATGAATGAAATTTA+GGG - chr1_1:29511092-29511111 None:intergenic 10.0%
!! TTATATAATGAATGAAATTT+AGG - chr1_1:29511093-29511112 None:intergenic 10.0%
!! TTATAGAGTAATAAAAATTA+TGG - chr1_1:29511167-29511186 None:intergenic 10.0%
!! TTTAAACTTAATAATTATCA+TGG - chr1_1:29512216-29512235 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTATGTT+GGG - chr1_1:29513525-29513544 None:intergenic 10.0%
!!! AAAAAAAAAAAAAAGTATGT+TGG - chr1_1:29513526-29513545 None:intergenic 10.0%
!!! TTAATCTTTTAACTTAATTT+TGG + chr1_1:29515260-29515279 Msa0017670:intron 10.0%
!! GTAAATAATTAAACAATAAA+AGG - chr1_1:29515416-29515435 None:intergenic 10.0%
!! AAGTTAAAAAAATATGATTA+AGG - chr1_1:29516905-29516924 None:intergenic 10.0%
!!! AAATAATTTTCATTTTTTCA+TGG - chr1_1:29517631-29517650 None:intergenic 10.0%
!! TAAATGTAAAATTACATAAA+AGG + chr1_1:29517849-29517868 Msa0017670:intron 10.0%
!!! TTTTATTAATGTATAATAAC+TGG - chr1_1:29518008-29518027 None:intergenic 10.0%
!! GTTAAATAGTATTAATTTAT+AGG + chr1_1:29518145-29518164 Msa0017670:intron 10.0%
!!! TATTTTACTTGAAATTATAA+AGG + chr1_1:29518479-29518498 Msa0017670:intron 10.0%
!!! ATTTTACTTGAAATTATAAA+GGG + chr1_1:29518480-29518499 Msa0017670:intron 10.0%
!!! CTTTTAAATTATTTTTTTAG+AGG + chr1_1:29519254-29519273 Msa0017670:intron 10.0%
!!! ATTTTCTTAAATGTTTTTAT+AGG + chr1_1:29519805-29519824 Msa0017670:intron 10.0%
!!! TTTTCTTAAATGTTTTTATA+GGG + chr1_1:29519806-29519825 Msa0017670:intron 10.0%
!!! TTAATTACATGATTTTTTTT+AGG + chr1_1:29520215-29520234 Msa0017670:intron 10.0%
!! ATAGAGTATAAATAATTATA+CGG + chr1_1:29520604-29520623 Msa0017670:intron 10.0%
!! AATCTATAAAAAAAATACTT+TGG + chr1_1:29520836-29520855 Msa0017670:intron 10.0%
!! TATATATATATAAAATGAGA+AGG - chr1_1:29521484-29521503 None:intergenic 10.0%
!!! CATGTAATTTTTTTATTAAT+AGG - chr1_1:29521846-29521865 None:intergenic 10.0%
!! ATTATAATATATAGTTTAAG+TGG + chr1_1:29522351-29522370 Msa0017670:three_prime_UTR 10.0%
!! TATATAAACAATCTCAAATA+TGG + chr1_1:29511106-29511125 Msa0017670:five_prime_UTR 15.0%
!!! TTTCTTAAATTTGAGTTAAA+TGG + chr1_1:29511273-29511292 Msa0017670:exon 15.0%
!!! TTTTTAAATTGTTATCATGA+TGG - chr1_1:29511923-29511942 None:intergenic 15.0%
!!! TTTTTTTATTGTTGCTAAAA+CGG + chr1_1:29513001-29513020 Msa0017670:intron 15.0%
!!! CTATGAAAAATTTATAGTTT+TGG + chr1_1:29513404-29513423 Msa0017670:intron 15.0%
!!! AAAAAAAAAAAAGTATGTTG+GGG - chr1_1:29513524-29513543 None:intergenic 15.0%
!! AATAATATCATATAAGTTGT+TGG - chr1_1:29513721-29513740 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr1_1:29514524-29514543 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1_1:29514631-29514650 None:intergenic 15.0%
!! TTTAATACATATACAAACAA+AGG - chr1_1:29515009-29515028 None:intergenic 15.0%
!!! AATTTTTTTCGAAATTTTAG+TGG + chr1_1:29515990-29516009 Msa0017670:intron 15.0%
!!! ATTTTTTTCGAAATTTTAGT+GGG + chr1_1:29515991-29516010 Msa0017670:intron 15.0%
!! CTAATTATTTATAAATGAAG+AGG + chr1_1:29516156-29516175 Msa0017670:intron 15.0%
!! CTCTAATAAATAAGATTAAA+AGG - chr1_1:29516236-29516255 None:intergenic 15.0%
!! TTATTTATTAGAGACATTTA+GGG + chr1_1:29516243-29516262 Msa0017670:intron 15.0%
!!! TAATCTAATGATAATTTTGT+CGG - chr1_1:29516381-29516400 None:intergenic 15.0%
!!! TATTGTTATTATTATTAGGT+TGG + chr1_1:29516439-29516458 Msa0017670:intron 15.0%
!! GAACAACTATTATTATTATT+AGG + chr1_1:29516478-29516497 Msa0017670:intron 15.0%
!! TAGTAATAAAAATTGTTACA+AGG - chr1_1:29516552-29516571 None:intergenic 15.0%
!! GAAATAATAGATTAGTAATA+GGG - chr1_1:29516585-29516604 None:intergenic 15.0%
!! TGAAATAATAGATTAGTAAT+AGG - chr1_1:29516586-29516605 None:intergenic 15.0%
!! TCCTTATATAATTAAGTTTA+AGG + chr1_1:29516660-29516679 Msa0017670:intron 15.0%
!! CCTTATATAATTAAGTTTAA+GGG + chr1_1:29516661-29516680 Msa0017670:intron 15.0%
!!! ATTTTAATTAAAAACGTGTT+TGG - chr1_1:29516732-29516751 None:intergenic 15.0%
!! AATTTAAATGTCTCTTATAT+AGG + chr1_1:29516862-29516881 Msa0017670:intron 15.0%
!! ATTTAAATGTCTCTTATATA+GGG + chr1_1:29516863-29516882 Msa0017670:intron 15.0%
!! AGATAATTAAAGATATCTAA+AGG - chr1_1:29517083-29517102 None:intergenic 15.0%
!!! ATTTCGCTTTTAATAATTTT+TGG + chr1_1:29517337-29517356 Msa0017670:intron 15.0%
!!! TTTTATGTTTTTGACATTTA+TGG + chr1_1:29517494-29517513 Msa0017670:intron 15.0%
!!! TTTATGTTTTTGACATTTAT+GGG + chr1_1:29517495-29517514 Msa0017670:intron 15.0%
!! AAAGTTATTTATACTTGAAA+AGG + chr1_1:29517572-29517591 Msa0017670:intron 15.0%
!! AAAAATTGTTAAAAAAACGA+AGG + chr1_1:29518089-29518108 Msa0017670:intron 15.0%
!! ATTAATACTATTTAACGATT+TGG - chr1_1:29518141-29518160 None:intergenic 15.0%
!!! AATATATATGTTTTTAATGC+AGG - chr1_1:29518463-29518482 None:intergenic 15.0%
!!! AGGTTTTAGATTAAATAATA+AGG + chr1_1:29518510-29518529 Msa0017670:intron 15.0%
!!! GGTTTTAGATTAAATAATAA+GGG + chr1_1:29518511-29518530 Msa0017670:intron 15.0%
!! TTAAATAATAAGGGTAAAAT+TGG + chr1_1:29518520-29518539 Msa0017670:intron 15.0%
!! TCATTGAAAAAATAAACTAA+GGG - chr1_1:29518742-29518761 None:intergenic 15.0%
!! GAAAAACAAATATTTAATGA+AGG + chr1_1:29518768-29518787 Msa0017670:intron 15.0%
!!! TGAACTCTTTTTAAAAAAAA+TGG + chr1_1:29519221-29519240 Msa0017670:intron 15.0%
!! AAATAGATAAAATTCATTCT+TGG + chr1_1:29519487-29519506 Msa0017670:intron 15.0%
!! ATAAGTCATAAATTAACAAT+TGG + chr1_1:29520265-29520284 Msa0017670:intron 15.0%
!! TAAGTCATAAATTAACAATT+GGG + chr1_1:29520266-29520285 Msa0017670:intron 15.0%
!!! GTTAAAATTTTGTAAAAAAG+TGG + chr1_1:29520424-29520443 Msa0017670:intron 15.0%
!! TGAGTCAAAAAAAAAAAAAT+AGG - chr1_1:29521025-29521044 None:intergenic 15.0%
!!! AGTAATAAAATTTACTTTTG+TGG - chr1_1:29521645-29521664 None:intergenic 15.0%
!! GAGTAATAAAAATTATGGAA+AGG - chr1_1:29511162-29511181 None:intergenic 20.0%
!! AACTCAATTCTCAAAATATA+GGG - chr1_1:29511217-29511236 None:intergenic 20.0%
!! ATGATGATTATGCATAATAT+TGG - chr1_1:29511602-29511621 None:intergenic 20.0%
!! TTTCAGTCAGAAATTAAATT+TGG + chr1_1:29511890-29511909 Msa0017670:intron 20.0%
!! TAAACAAACTATATGTAGAT+TGG + chr1_1:29511998-29512017 Msa0017670:intron 20.0%
!!! ATTAGAACTTATAGATTTTG+TGG + chr1_1:29512282-29512301 Msa0017670:intron 20.0%
!! AATATCATCTTCACTTATAT+GGG - chr1_1:29512751-29512770 None:intergenic 20.0%
!! AAATATCATCTTCACTTATA+TGG - chr1_1:29512752-29512771 None:intergenic 20.0%
!! GAATTGAAAAGTGATTAAAA+CGG - chr1_1:29513256-29513275 None:intergenic 20.0%
!!! TTCAATTCTCTATTTTCTTT+TGG + chr1_1:29513268-29513287 Msa0017670:intron 20.0%
!!! TCAATTCTCTATTTTCTTTT+GGG + chr1_1:29513269-29513288 Msa0017670:intron 20.0%
!!! AAAAAAAAAAAGTATGTTGG+GGG - chr1_1:29513523-29513542 None:intergenic 20.0%
!! TATACTTATGACATTATAGT+TGG - chr1_1:29514140-29514159 None:intergenic 20.0%
!! GAGATGAAAATACTTATAAA+TGG - chr1_1:29514279-29514298 None:intergenic 20.0%
!!! CTAGCAATAAAGTTTTAAAA+AGG + chr1_1:29514375-29514394 Msa0017670:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1_1:29514621-29514640 Msa0017670:intron 20.0%
!!! TATTTGAACAATCATTTTCA+TGG + chr1_1:29514775-29514794 Msa0017670:intron 20.0%
!! AAACTAAAACAATAGAGAAA+AGG + chr1_1:29514849-29514868 Msa0017670:intron 20.0%
!! AGAAATGTGAAAAAAACAAA+GGG - chr1_1:29514926-29514945 None:intergenic 20.0%
!! AAGAAATGTGAAAAAAACAA+AGG - chr1_1:29514927-29514946 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + chr1_1:29515049-29515068 Msa0017670:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + chr1_1:29515050-29515069 Msa0017670:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr1_1:29515051-29515070 Msa0017670:intron 20.0%
!! AAAATAATTCAATTTCGGAA+AGG - chr1_1:29515477-29515496 None:intergenic 20.0%
!!! TTCCGAAATTGAATTATTTT+CGG + chr1_1:29515477-29515496 Msa0017670:intron 20.0%
!! ATTATCAATTGAATGAAACA+AGG + chr1_1:29515871-29515890 Msa0017670:intron 20.0%
!!! TTTTTTTCGAAATTTTAGTG+GGG + chr1_1:29515992-29516011 Msa0017670:intron 20.0%
!!! ATTCTGGAAATTATTTTTGT+AGG + chr1_1:29516030-29516049 Msa0017670:intron 20.0%
!!! TTCTGGAAATTATTTTTGTA+GGG + chr1_1:29516031-29516050 Msa0017670:intron 20.0%
!! CTTATTTATTAGAGACATTT+AGG + chr1_1:29516242-29516261 Msa0017670:intron 20.0%
!!! TATTTTTAATTTGACGTGTT+TGG + chr1_1:29516305-29516324 Msa0017670:intron 20.0%
!!! TTTGGTTCAATTTTTAAGAA+AGG + chr1_1:29516323-29516342 Msa0017670:intron 20.0%
!!! TTGGTTCAATTTTTAAGAAA+GGG + chr1_1:29516324-29516343 Msa0017670:intron 20.0%
!! AGGAAAAGTTGTTAATAATA+TGG - chr1_1:29516532-29516551 None:intergenic 20.0%
!! CCCTTAAACTTAATTATATA+AGG - chr1_1:29516664-29516683 None:intergenic 20.0%
!!! TATCTGGTTTAAAATATAGA+CGG + chr1_1:29516821-29516840 Msa0017670:intron 20.0%
!! AAAATATGATTAAGGACTAA+AGG - chr1_1:29516897-29516916 None:intergenic 20.0%
!!! TTATGTTTTTGACATTTATG+GGG + chr1_1:29517496-29517515 Msa0017670:intron 20.0%
!! TATCTAAATCCTTTATCATT+TGG + chr1_1:29517521-29517540 Msa0017670:intron 20.0%
!! TGAGACAAGTTTAATATAAA+AGG + chr1_1:29518337-29518356 Msa0017670:intron 20.0%
!! ATAAAAGGCAAAGAATTTAA+CGG + chr1_1:29518352-29518371 Msa0017670:intron 20.0%
!!! ATGGTTCGTTAATTTTTTTT+TGG - chr1_1:29518380-29518399 None:intergenic 20.0%
!!! TTCATTTTATATTCCTTTGA+AGG - chr1_1:29518416-29518435 None:intergenic 20.0%
!! AAATTATAAAGGGTAAAACA+AGG + chr1_1:29518490-29518509 Msa0017670:intron 20.0%
!! CTCATTGAAAAAATAAACTA+AGG - chr1_1:29518743-29518762 None:intergenic 20.0%
!! TTGAATAATAAGGGTAAATA+TGG + chr1_1:29518892-29518911 Msa0017670:intron 20.0%
!! TTCATATTAGATACATTCTT+CGG - chr1_1:29519125-29519144 None:intergenic 20.0%
!! TTTGAATTGCATTCAAATAA+TGG + chr1_1:29519365-29519384 Msa0017670:intron 20.0%
!! TTGAATTGCATTCAAATAAT+GGG + chr1_1:29519366-29519385 Msa0017670:intron 20.0%
!!! AAACGATGCTTATTTTTTAT+AGG - chr1_1:29519563-29519582 None:intergenic 20.0%
!! ATACTATAATAACATGAAAG+TGG - chr1_1:29519696-29519715 None:intergenic 20.0%
!!! TCTCATAAAATTCACTTTTA+TGG + chr1_1:29519833-29519852 Msa0017670:intron 20.0%
!! TAAAGTTGCTAATTAACTTT+AGG - chr1_1:29520163-29520182 None:intergenic 20.0%
!! AAAGTTAATTAGCAACTTTA+AGG + chr1_1:29520163-29520182 Msa0017670:intron 20.0%
!!! AAAATTTTGTAAAAAAGTGG+TGG + chr1_1:29520427-29520446 Msa0017670:intron 20.0%
!!! AAATTTTGTAAAAAAGTGGT+GGG + chr1_1:29520428-29520447 Msa0017670:intron 20.0%
!! CTTGAAAAAAAATATAAAGG+TGG - chr1_1:29520457-29520476 None:intergenic 20.0%
!! GCACTTGAAAAAAAATATAA+AGG - chr1_1:29520460-29520479 None:intergenic 20.0%
!! AGTATAAATAATTATACGGA+AGG + chr1_1:29520608-29520627 Msa0017670:intron 20.0%
!!! TGTGAAATAATGTTTTCATT+CGG + chr1_1:29520676-29520695 Msa0017670:intron 20.0%
!! ATTCTAATATCATCTTAGAA+CGG - chr1_1:29520819-29520838 None:intergenic 20.0%
!! TGATTTATAAATCCTAAGTT+AGG + chr1_1:29520947-29520966 Msa0017670:intron 20.0%
!!! ATACATTTTGCTATAGATAT+AGG - chr1_1:29520994-29521013 None:intergenic 20.0%
!! AATTACTTAGACATTAATGT+TGG + chr1_1:29521087-29521106 Msa0017670:intron 20.0%
!!! TAAAATTTACTTTTGTGGTT+TGG - chr1_1:29521640-29521659 None:intergenic 20.0%
!! TATATTCGAAACAAATGAAT+TGG - chr1_1:29521760-29521779 None:intergenic 20.0%
!!! AAAAATTACATGTTGCATTT+TGG + chr1_1:29521854-29521873 Msa0017670:intron 20.0%
!! TAATATATAGTTTAAGTGGA+AGG + chr1_1:29522355-29522374 Msa0017670:three_prime_UTR 20.0%
!! GACAAAGAAAACAATTAATA+TGG - chr1_1:29522522-29522541 None:intergenic 20.0%
!! TCTCAAATATGGTTTTCATT+AGG + chr1_1:29511117-29511136 Msa0017670:five_prime_UTR 25.0%
!! CTCAAATATGGTTTTCATTA+GGG + chr1_1:29511118-29511137 Msa0017670:five_prime_UTR 25.0%
! ACTCTATAAAACAACAAAGT+AGG + chr1_1:29511178-29511197 Msa0017670:five_prime_UTR 25.0%
! CTCTATAAAACAACAAAGTA+GGG + chr1_1:29511179-29511198 Msa0017670:five_prime_UTR 25.0%
! CAACTCAATTCTCAAAATAT+AGG - chr1_1:29511218-29511237 None:intergenic 25.0%
! AGTTAAACGTATATGGTATT+TGG + chr1_1:29511246-29511265 Msa0017670:five_prime_UTR 25.0%
!! CTTAAATTTGAGTTAAATGG+AGG + chr1_1:29511276-29511295 Msa0017670:exon 25.0%
! TTTGAATTTGGATTTGGATT+TGG - chr1_1:29511316-29511335 None:intergenic 25.0%
!!! CTTTGATTTGAATTTGGATT+TGG - chr1_1:29511322-29511341 None:intergenic 25.0%
!!! CTTGAACTTTGATTTGAATT+TGG - chr1_1:29511328-29511347 None:intergenic 25.0%
! CAAATTCAAATCAAAGTTCA+AGG + chr1_1:29511326-29511345 Msa0017670:CDS 25.0%
! AACTTTCATCTTCAATCAAA+TGG + chr1_1:29511439-29511458 Msa0017670:CDS 25.0%
! TATTTGTTCTCATTAAAGCT+GGG - chr1_1:29511567-29511586 None:intergenic 25.0%
! ATATTTGTTCTCATTAAAGC+TGG - chr1_1:29511568-29511587 None:intergenic 25.0%
! TTGGTTAATCTCAAATTTAG+TGG + chr1_1:29511829-29511848 Msa0017670:intron 25.0%
! TTAATCTCAAATTTAGTGGA+AGG + chr1_1:29511833-29511852 Msa0017670:intron 25.0%
! TAAATTGTTATCATGATGGT+GGG - chr1_1:29511919-29511938 None:intergenic 25.0%
! TTAAATTGTTATCATGATGG+TGG - chr1_1:29511920-29511939 None:intergenic 25.0%
! AAATGGTGTTTATGTTTAAC+AGG + chr1_1:29512317-29512336 Msa0017670:intron 25.0%
! ACGAACTCATAAATTAATTC+TGG + chr1_1:29512577-29512596 Msa0017670:intron 25.0%
! GATAAAAAATGTAGCGATTA+GGG - chr1_1:29512792-29512811 None:intergenic 25.0%
! TGATAAAAAATGTAGCGATT+AGG - chr1_1:29512793-29512812 None:intergenic 25.0%
!!! TTGTATTTTTTTTTCCCCTT+TGG + chr1_1:29512885-29512904 Msa0017670:intron 25.0%
! AATGAAATCAAATGTCCAAA+GGG - chr1_1:29512903-29512922 None:intergenic 25.0%
! AAATGAAATCAAATGTCCAA+AGG - chr1_1:29512904-29512923 None:intergenic 25.0%
!! TTTTATACCTAACCTTTTAG+AGG + chr1_1:29512927-29512946 Msa0017670:intron 25.0%
!! TTTATACCTAACCTTTTAGA+GGG + chr1_1:29512928-29512947 Msa0017670:intron 25.0%
! GAAACAGTAAAAAATTCATC+TGG - chr1_1:29512980-29512999 None:intergenic 25.0%
! TCTGACAAAATTATTCTTCT+AGG + chr1_1:29513082-29513101 Msa0017670:intron 25.0%
! CTGACAAAATTATTCTTCTA+GGG + chr1_1:29513083-29513102 Msa0017670:intron 25.0%
! AAAAAAGGATGCAAAAGAAA+GGG - chr1_1:29513469-29513488 None:intergenic 25.0%
! TAAAAAAGGATGCAAAAGAA+AGG - chr1_1:29513470-29513489 None:intergenic 25.0%
!!! TCCTTTTTTACAAAACACAT+TGG + chr1_1:29513480-29513499 Msa0017670:intron 25.0%
!! TCCAATGTGTTTTGTAAAAA+AGG - chr1_1:29513484-29513503 None:intergenic 25.0%
! AAATATGATCAAAGTATGTC+AGG - chr1_1:29513808-29513827 None:intergenic 25.0%
! AATATCATATAAGCTGTTGT+TGG + chr1_1:29513852-29513871 Msa0017670:intron 25.0%
! TTAACTAGGTCATCTAATAT+GGG + chr1_1:29513981-29514000 Msa0017670:intron 25.0%
! GAGGGAGTAATAAAAAAATA+AGG + chr1_1:29514007-29514026 Msa0017670:intron 25.0%
! AAATGCAATGATTAAGAGAA+TGG - chr1_1:29514658-29514677 None:intergenic 25.0%
! CAAGATCCTTAAAAAAAAAG+AGG + chr1_1:29514747-29514766 Msa0017670:intron 25.0%
!!! AACACACCTCTTTTTTTTTA+AGG - chr1_1:29514756-29514775 None:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG - chr1_1:29515000-29515019 None:intergenic 25.0%
!!! TATTAATTAGGGGTATGTTT+TGG + chr1_1:29515061-29515080 Msa0017670:intron 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr1_1:29515098-29515117 Msa0017670:intron 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr1_1:29515099-29515118 Msa0017670:intron 25.0%
! GGACAAAAATAAAGTCAAAT+GGG + chr1_1:29515134-29515153 Msa0017670:intron 25.0%
!!! ACTTAATTTTGGTTGAAACT+TGG + chr1_1:29515271-29515290 Msa0017670:intron 25.0%
!! ACATTTCCAATGATTTTTCA+GGG - chr1_1:29515384-29515403 None:intergenic 25.0%
! TGCCGAAAATAATTCAATTT+CGG - chr1_1:29515482-29515501 None:intergenic 25.0%
!! ATTTTCCATATCAGAGAAAT+TGG - chr1_1:29515537-29515556 None:intergenic 25.0%
! TTTCTCTGATATGGAAAATT+TGG + chr1_1:29515538-29515557 Msa0017670:intron 25.0%
! TTCTCTGATATGGAAAATTT+GGG + chr1_1:29515539-29515558 Msa0017670:intron 25.0%
! TATAAAGAAAATGGCAGAAA+AGG + chr1_1:29515814-29515833 Msa0017670:intron 25.0%
!! GGTAAAATTGGAATTTTAGA+TGG + chr1_1:29516073-29516092 Msa0017670:intron 25.0%
!!! ATAATTAGATAGTGCCATTT+AGG - chr1_1:29516144-29516163 None:intergenic 25.0%
! TAAAAGGAGTAATTATCAAG+TGG - chr1_1:29516220-29516239 None:intergenic 25.0%
!!! TTCAATTTTTAAGAAAGGGA+GGG + chr1_1:29516328-29516347 Msa0017670:intron 25.0%
! ACTCATAAGCATGTATTTAT+CGG - chr1_1:29517158-29517177 None:intergenic 25.0%
! ATAATGCATATAGTCAAACA+AGG + chr1_1:29517208-29517227 Msa0017670:intron 25.0%
! TTGATTGATCCAAATGATAA+AGG - chr1_1:29517533-29517552 None:intergenic 25.0%
! AGAAGTCATTATAAAATGGA+GGG - chr1_1:29517656-29517675 None:intergenic 25.0%
! AGACAGAAGTCATTATAAAA+TGG - chr1_1:29517660-29517679 None:intergenic 25.0%
!! TTTTATAATGACTTCTGTCT+TGG + chr1_1:29517660-29517679 Msa0017670:intron 25.0%
! TTTATAATGACTTCTGTCTT+GGG + chr1_1:29517661-29517680 Msa0017670:intron 25.0%
!!! TGAAGGCATTTAATTGTATA+TGG - chr1_1:29518399-29518418 None:intergenic 25.0%
! ATACAATTAAATGCCTTCAA+AGG + chr1_1:29518400-29518419 Msa0017670:intron 25.0%
! TTGACAAAAAAAACTCTGTT+TGG - chr1_1:29518659-29518678 None:intergenic 25.0%
!! AAGCTATAAGCTCATTTTAA+TGG + chr1_1:29518703-29518722 Msa0017670:intron 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG + chr1_1:29518882-29518901 Msa0017670:intron 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG + chr1_1:29518883-29518902 Msa0017670:intron 25.0%
! TTAGACACATCCATTAAAAA+AGG + chr1_1:29519283-29519302 Msa0017670:intron 25.0%
!!! AAAATTGCAGCCTTTTTTAA+TGG - chr1_1:29519296-29519315 None:intergenic 25.0%
!!! GATGCTTATTTTTTATAGGA+GGG - chr1_1:29519559-29519578 None:intergenic 25.0%
!!! AGCATCGTTTTAGAAAAAAT+TGG + chr1_1:29519573-29519592 Msa0017670:intron 25.0%
!!! GTTTCCATGAAGTTTTTTTA+TGG + chr1_1:29519767-29519786 Msa0017670:intron 25.0%
! TTGTCCATAAAAAAACTTCA+TGG - chr1_1:29519774-29519793 None:intergenic 25.0%
! ATTGAATGTAGAAGTGATAT+CGG - chr1_1:29520121-29520140 None:intergenic 25.0%
!! CATCTAAGGTACAAATTTAA+GGG - chr1_1:29520497-29520516 None:intergenic 25.0%
! TACATCTATCTATCTATAAG+TGG + chr1_1:29520743-29520762 Msa0017670:intron 25.0%
! ACATCTATCTATCTATAAGT+GGG + chr1_1:29520744-29520763 Msa0017670:intron 25.0%
! GATTTATAAATCAACTTGCA+AGG - chr1_1:29520940-29520959 None:intergenic 25.0%
!! ATATAGGCCTTTAAGAATTT+GGG - chr1_1:29520978-29520997 None:intergenic 25.0%
! TGAGTAGATGATAAAAATGA+AGG + chr1_1:29521131-29521150 Msa0017670:intron 25.0%
!! TTTTCCTTTCTTTTTCTTCT+TGG - chr1_1:29521306-29521325 None:intergenic 25.0%
!!! CAAGAATATTCGATTTTTTG+CGG - chr1_1:29521534-29521553 None:intergenic 25.0%
!!! GTTTAATTTGGATCGATTTT+TGG - chr1_1:29521884-29521903 None:intergenic 25.0%
! GAGAAAGGAAAAAAAAACTA+TGG - chr1_1:29521925-29521944 None:intergenic 25.0%
!! GAAGAATATAACTTTGAGAA+AGG - chr1_1:29521940-29521959 None:intergenic 25.0%
! TCTCAAAGTTATATTCTTCT+TGG + chr1_1:29521941-29521960 Msa0017670:intron 25.0%
! TTAGTCCATTTCTCAAATTA+CGG - chr1_1:29522231-29522250 None:intergenic 25.0%
! ACAATTAATATGGTCACTAT+GGG - chr1_1:29522512-29522531 None:intergenic 25.0%
! AACAATTAATATGGTCACTA+TGG - chr1_1:29522513-29522532 None:intergenic 25.0%
! CATTATATGTTACTCTTTGT+TGG + chr1_1:29522603-29522622 Msa0017670:three_prime_UTR 25.0%
!!! TAACTTTAGTTTGTGGTATT+TGG + chr1_1:29522709-29522728 Msa0017670:three_prime_UTR 25.0%
! GATTGGAGCTTATAGATTTT+GGG - chr1_1:29510972-29510991 None:intergenic 30.0%
! TGATTGGAGCTTATAGATTT+TGG - chr1_1:29510973-29510992 None:intergenic 30.0%
! CTCTCAACTTCTTAAACTTT+TGG + chr1_1:29511004-29511023 Msa0017670:five_prime_UTR 30.0%
!! GATTATGTTGATGATTGTGT+TGG - chr1_1:29511405-29511424 None:intergenic 30.0%
TGAAGATGAAAGTTGTTCAT+TGG - chr1_1:29511433-29511452 None:intergenic 30.0%
AAAGCTGGGTAATGAAAAAT+CGG - chr1_1:29511553-29511572 None:intergenic 30.0%
TTATGCATAATATTGGTGTG+TGG - chr1_1:29511595-29511614 None:intergenic 30.0%
ATGCATAATCATCATCATCA+AGG + chr1_1:29511607-29511626 Msa0017670:CDS 30.0%
!! TGTAAAAGACTAGAGTATTG+AGG - chr1_1:29511700-29511719 None:intergenic 30.0%
! TAGTCTTTTACAAGCTTACA+TGG + chr1_1:29511708-29511727 Msa0017670:CDS 30.0%
!!! AGGGGGTATATTTTGTTTTA+TGG + chr1_1:29512144-29512163 Msa0017670:intron 30.0%
AGTATAGAGAGGAATTAACA+AGG + chr1_1:29512364-29512383 Msa0017670:CDS 30.0%
!! TTGAAAGCATGTGAGATTTT+TGG - chr1_1:29512704-29512723 None:intergenic 30.0%
ATGAAATCAAATGTCCAAAG+GGG - chr1_1:29512902-29512921 None:intergenic 30.0%
! GAATAATTTTGTCAGAACTC+AGG - chr1_1:29513078-29513097 None:intergenic 30.0%
! CAGCAAAACATTGATTAACA+AGG - chr1_1:29513112-29513131 None:intergenic 30.0%
!! TGTTTTGCTGACTAAAAACT+CGG + chr1_1:29513122-29513141 Msa0017670:intron 30.0%
ACTCTTTCTCATCATTACAT+TGG + chr1_1:29513201-29513220 Msa0017670:intron 30.0%
! CATTACATTGGTCAGTTTTT+CGG + chr1_1:29513213-29513232 Msa0017670:intron 30.0%
TCAAACAGGTCATCTAATAA+GGG - chr1_1:29513769-29513788 None:intergenic 30.0%
! AAAAGTGCAAATTGTCAAAC+AGG - chr1_1:29513783-29513802 None:intergenic 30.0%
GTTAACTAGGTCATCTAATA+TGG + chr1_1:29513980-29513999 Msa0017670:intron 30.0%
CTAGGTCATTTATTGTAGAA+CGG + chr1_1:29514064-29514083 Msa0017670:intron 30.0%
AGAACTAACTCATGTATGTT+GGG - chr1_1:29514254-29514273 None:intergenic 30.0%
CTTCTTAACAAGTGTCATAA+CGG - chr1_1:29514421-29514440 None:intergenic 30.0%
! GACACTTGTTAAGAAGTTTA+AGG + chr1_1:29514425-29514444 Msa0017670:intron 30.0%
! ATCATTTTCATGGCAACTTT+TGG + chr1_1:29514785-29514804 Msa0017670:intron 30.0%
! TCATTTTCATGGCAACTTTT+GGG + chr1_1:29514786-29514805 Msa0017670:intron 30.0%
ACAAAGGGATGTTACATTAA+GGG - chr1_1:29514911-29514930 None:intergenic 30.0%
AACAAAGGGATGTTACATTA+AGG - chr1_1:29514912-29514931 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr1_1:29515100-29515119 Msa0017670:intron 30.0%
TTGAAAAGGGGTTTAGATTT+AGG + chr1_1:29515112-29515131 Msa0017670:intron 30.0%
TGAAAAGGGGTTTAGATTTA+GGG + chr1_1:29515113-29515132 Msa0017670:intron 30.0%
GGGACAAAAATAAAGTCAAA+TGG + chr1_1:29515133-29515152 Msa0017670:intron 30.0%
CAAAAATAAAGTCAAATGGG+TGG + chr1_1:29515137-29515156 Msa0017670:intron 30.0%
TGAGATATGGACACAAAAAA+TGG - chr1_1:29515314-29515333 None:intergenic 30.0%
TCCATATCTCATTAAATGAC+AGG + chr1_1:29515323-29515342 Msa0017670:intron 30.0%
! TCCTGTCATTTAATGAGATA+TGG - chr1_1:29515327-29515346 None:intergenic 30.0%
! GACATTTCCAATGATTTTTC+AGG - chr1_1:29515385-29515404 None:intergenic 30.0%
!!! AAGTAAACCTTTTTCGATGA+AGG + chr1_1:29515507-29515526 Msa0017670:intron 30.0%
AGGTTTCTTGAACATACTTA+CGG + chr1_1:29515600-29515619 Msa0017670:intron 30.0%
! CTTAACAAGGAATTGGTTTA+TGG - chr1_1:29515640-29515659 None:intergenic 30.0%
CAAGCACTAATTCTATTCAT+TGG + chr1_1:29515786-29515805 Msa0017670:intron 30.0%
! AACCCTCATTCAATTTTGTA+GGG + chr1_1:29515929-29515948 Msa0017670:intron 30.0%
ATCCCTACAAAATTGAATGA+GGG - chr1_1:29515934-29515953 None:intergenic 30.0%
TTTCAATTTACCGTTTACTC+TGG - chr1_1:29515964-29515983 None:intergenic 30.0%
GTGAAGCATGAATAAAATTC+TGG + chr1_1:29516014-29516033 Msa0017670:intron 30.0%
AATGCTAAAAGGGGTAAAAT+TGG + chr1_1:29516061-29516080 Msa0017670:intron 30.0%
!! TGGAATTTTAGATGGTTTGT+AGG + chr1_1:29516081-29516100 Msa0017670:intron 30.0%
!! GGAATTTTAGATGGTTTGTA+GGG + chr1_1:29516082-29516101 Msa0017670:intron 30.0%
!! GAATTTTAGATGGTTTGTAG+GGG + chr1_1:29516083-29516102 Msa0017670:intron 30.0%
ACCAGGTAAAATTTCCTAAA+TGG + chr1_1:29516127-29516146 Msa0017670:intron 30.0%
!! GTTCAATTTTTAAGAAAGGG+AGG + chr1_1:29516327-29516346 Msa0017670:intron 30.0%
!! TCAATTTTTAAGAAAGGGAG+GGG + chr1_1:29516329-29516348 Msa0017670:intron 30.0%
ATCAATCTTTGTGGACTTAA+GGG - chr1_1:29516800-29516819 None:intergenic 30.0%
TATCAATCTTTGTGGACTTA+AGG - chr1_1:29516801-29516820 None:intergenic 30.0%
TCCACAAAGATTGATATATC+TGG + chr1_1:29516805-29516824 Msa0017670:intron 30.0%
ACCAGATATATCAATCTTTG+TGG - chr1_1:29516809-29516828 None:intergenic 30.0%
GTAAAACATCAAAGACATCA+AGG - chr1_1:29516958-29516977 None:intergenic 30.0%
GACTATATGCATTATTCACA+TGG - chr1_1:29517203-29517222 None:intergenic 30.0%
! TCAAACAAGGTCTATCATTT+TGG + chr1_1:29517221-29517240 Msa0017670:intron 30.0%
! CAAACAAGGTCTATCATTTT+GGG + chr1_1:29517222-29517241 Msa0017670:intron 30.0%
! TGGTGATGTAAAATACTTAC+TGG - chr1_1:29517364-29517383 None:intergenic 30.0%
! TTAAAAGTATGGTCGAAAAG+TGG - chr1_1:29517384-29517403 None:intergenic 30.0%
! CATGAGTTGACTTAAAAGTA+TGG - chr1_1:29517395-29517414 None:intergenic 30.0%
CAGAAGTCATTATAAAATGG+AGG - chr1_1:29517657-29517676 None:intergenic 30.0%
! TGAAGTGTTTGGTAAAATAG+CGG + chr1_1:29517813-29517832 Msa0017670:intron 30.0%
ACGAGCTTATAACTTATTTC+AGG - chr1_1:29518621-29518640 None:intergenic 30.0%
AAATAAACTAAGGGTCTGTT+TGG - chr1_1:29518733-29518752 None:intergenic 30.0%
TATTTAATGAAGGCTCTGTT+TGG + chr1_1:29518778-29518797 Msa0017670:intron 30.0%
TTGACAAAAAAAGCTCTGTT+TGG - chr1_1:29519041-29519060 None:intergenic 30.0%
!!! AGAGCTAAAAGCTCTTTTTT+TGG + chr1_1:29519084-29519103 Msa0017670:intron 30.0%
!!! GAGCTAAAAGCTCTTTTTTT+GGG + chr1_1:29519085-29519104 Msa0017670:intron 30.0%
CTAATATGAATCTAGTCCAA+TGG + chr1_1:29519135-29519154 Msa0017670:intron 30.0%
TAAAAATACGAGTCTTCCAT+TGG - chr1_1:29519154-29519173 None:intergenic 30.0%
TAACTATTGTTAGATGACGA+TGG + chr1_1:29519332-29519351 Msa0017670:intron 30.0%
TATAGTGTGACTTTGAATTC+TGG + chr1_1:29519392-29519411 Msa0017670:intron 30.0%
!!! CGATGCTTATTTTTTATAGG+AGG - chr1_1:29519560-29519579 None:intergenic 30.0%
TCCTCAATTTCGATATTTCA+AGG + chr1_1:29519643-29519662 Msa0017670:intron 30.0%
ACCTTGAAATATCGAAATTG+AGG - chr1_1:29519647-29519666 None:intergenic 30.0%
ATACTTAATGCAATGCACTA+AGG + chr1_1:29519956-29519975 Msa0017670:intron 30.0%
! CCATCTAAGGTACAAATTTA+AGG - chr1_1:29520498-29520517 None:intergenic 30.0%
CCTTAAATTTGTACCTTAGA+TGG + chr1_1:29520495-29520514 Msa0017670:intron 30.0%
!!! TTGTTTTTTCTCTCCATCTA+AGG - chr1_1:29520511-29520530 None:intergenic 30.0%
! AAAAACAATGTTTCTGTGTG+TGG + chr1_1:29520523-29520542 Msa0017670:intron 30.0%
! TTGTTATTGAAAGTCCCATA+TGG + chr1_1:29520704-29520723 Msa0017670:intron 30.0%
TGTTATTGAAAGTCCCATAT+GGG + chr1_1:29520705-29520724 Msa0017670:intron 30.0%
! AGTCTTATATGATCCCATAT+GGG - chr1_1:29520721-29520740 None:intergenic 30.0%
! AAGTCTTATATGATCCCATA+TGG - chr1_1:29520722-29520741 None:intergenic 30.0%
! CCATACAAAATTGAGTTGTA+AGG - chr1_1:29520780-29520799 None:intergenic 30.0%
! CCTTACAACTCAATTTTGTA+TGG + chr1_1:29520777-29520796 Msa0017670:intron 30.0%
AATATCATCTTAGAACGGTT+GGG - chr1_1:29520814-29520833 None:intergenic 30.0%
TAATATCATCTTAGAACGGT+TGG - chr1_1:29520815-29520834 None:intergenic 30.0%
! GATATAGGCCTTTAAGAATT+TGG - chr1_1:29520979-29520998 None:intergenic 30.0%
CTTTCCAAGAAGAAAAAGAA+AGG + chr1_1:29521299-29521318 Msa0017670:CDS 30.0%
GAAAGGAAAATTACCTAAAG+AGG + chr1_1:29521316-29521335 Msa0017670:CDS 30.0%
CTAGACAAAAGCTACTTAAT+TGG + chr1_1:29521339-29521358 Msa0017670:CDS 30.0%
ACAAAAGCTACTTAATTGGT+GGG + chr1_1:29521343-29521362 Msa0017670:CDS 30.0%
!!! TTCGCTTTTTTTTATCGGTT+TGG - chr1_1:29521509-29521528 None:intergenic 30.0%
!!! CGGTATTCGCTTTTTTTTAT+CGG - chr1_1:29521514-29521533 None:intergenic 30.0%
CGCAAAAAATCGAATATTCT+TGG + chr1_1:29521532-29521551 Msa0017670:intron 30.0%
!! GTTGTTTTGTAAAAACCGTT+AGG + chr1_1:29521567-29521586 Msa0017670:intron 30.0%
CATCACATTGTGGTTTAATT+TGG - chr1_1:29521896-29521915 None:intergenic 30.0%
TGGACATATGATCACTATAT+AGG + chr1_1:29521961-29521980 Msa0017670:intron 30.0%
ACCAGAAGCAAATAAATAAC+TGG + chr1_1:29522023-29522042 Msa0017670:CDS 30.0%
ACCAGTTATTTATTTGCTTC+TGG - chr1_1:29522027-29522046 None:intergenic 30.0%
! ATAACTGGTTCATCAATCAA+AGG + chr1_1:29522038-29522057 Msa0017670:CDS 30.0%
TTATATGGATGGTCATTACA+TGG + chr1_1:29522135-29522154 Msa0017670:CDS 30.0%
CGCTTCATATATCATAATCA+TGG - chr1_1:29522184-29522203 None:intergenic 30.0%
TTGAACATTATCACCAATGT+CGG + chr1_1:29522251-29522270 Msa0017670:three_prime_UTR 30.0%
TTATCTTCAATATGAAGCGT+CGG + chr1_1:29522288-29522307 Msa0017670:three_prime_UTR 30.0%
!! TGTGTAGTAACTTTAGTTTG+TGG + chr1_1:29522702-29522721 Msa0017670:three_prime_UTR 30.0%
! ACATCATGTGAAAGTTTTGC+TGG + chr1_1:29510920-29510939 Msa0017670:five_prime_UTR 35.0%
!!! ATAGATTTTGGGCATTGACA+GGG - chr1_1:29510961-29510980 None:intergenic 35.0%
!!! TATAGATTTTGGGCATTGAC+AGG - chr1_1:29510962-29510981 None:intergenic 35.0%
! ATTTTGTGTGTGTTGTGTTG+GGG - chr1_1:29511055-29511074 None:intergenic 35.0%
! GATTTTGTGTGTGTTGTGTT+GGG - chr1_1:29511056-29511075 None:intergenic 35.0%
! TGATTTTGTGTGTGTTGTGT+TGG - chr1_1:29511057-29511076 None:intergenic 35.0%
GTGAGAGAGTTAAACGTATA+TGG + chr1_1:29511239-29511258 Msa0017670:five_prime_UTR 35.0%
GCAATGGAGTACAAGAAATT+TGG - chr1_1:29511352-29511371 None:intergenic 35.0%
TGTTGATGTTGTACTTGATC+AGG - chr1_1:29511484-29511503 None:intergenic 35.0%
CATAATCATCATCATCAAGG+AGG + chr1_1:29511610-29511629 Msa0017670:CDS 35.0%
! TTGAGGATGAGCAATGATTT+TGG - chr1_1:29511683-29511702 None:intergenic 35.0%
! AGCTTACATGGATTGTCAAA+AGG + chr1_1:29511720-29511739 Msa0017670:CDS 35.0%
! AACCCTCTTTTTCTCTTGAA+GGG - chr1_1:29511810-29511829 None:intergenic 35.0%
! AAACCCTCTTTTTCTCTTGA+AGG - chr1_1:29511811-29511830 None:intergenic 35.0%
TTCAAGAGAAAAAGAGGGTT+TGG + chr1_1:29511810-29511829 Msa0017670:intron 35.0%
TAGACCAATTCATGGTACAA+GGG + chr1_1:29512125-29512144 Msa0017670:intron 35.0%
!!! TGTGGTTTTAGACGTTGAAA+TGG + chr1_1:29512300-29512319 Msa0017670:intron 35.0%
ATTAACAAGGCCTATACAAG+AGG + chr1_1:29512377-29512396 Msa0017670:CDS 35.0%
AAATCCATAGCCTCTTGTAT+AGG - chr1_1:29512390-29512409 None:intergenic 35.0%
CAGCTAAATACACTTTGCAA+TGG + chr1_1:29512429-29512448 Msa0017670:CDS 35.0%
! AGATAAAGTACTACTCACCA+GGG - chr1_1:29512470-29512489 None:intergenic 35.0%
! AAGATAAAGTACTACTCACC+AGG - chr1_1:29512471-29512490 None:intergenic 35.0%
!! GTTTTGCTGACTAAAAACTC+GGG + chr1_1:29513123-29513142 Msa0017670:intron 35.0%
GACTAAAAACTCGGGTTTAT+CGG + chr1_1:29513131-29513150 Msa0017670:intron 35.0%
! ATCGGTTTCTAAGGATTCAT+TGG + chr1_1:29513149-29513168 Msa0017670:intron 35.0%
! TCGGTTTCTAAGGATTCATT+GGG + chr1_1:29513150-29513169 Msa0017670:intron 35.0%
AGTGATTAAAACGGCATTAG+CGG - chr1_1:29513247-29513266 None:intergenic 35.0%
GCAAATGTTAACCTATGCTT+GGG + chr1_1:29513291-29513310 Msa0017670:intron 35.0%
CAAATGTTAACCTATGCTTG+GGG + chr1_1:29513292-29513311 Msa0017670:intron 35.0%
! AAAAAAAGTATGTTGGGGGT+TGG - chr1_1:29513519-29513538 None:intergenic 35.0%
!! TCAACTGTGTCACTTAACAT+GGG - chr1_1:29513593-29513612 None:intergenic 35.0%
GTCAAACAGGTCATCTAATA+AGG - chr1_1:29513770-29513789 None:intergenic 35.0%
TATGTGTGTCTGAGTTAACT+AGG + chr1_1:29513967-29513986 Msa0017670:intron 35.0%
AATAGTGCACATTGTCAACT+AGG + chr1_1:29514046-29514065 Msa0017670:intron 35.0%
GTCATTTATTGTAGAACGGA+GGG + chr1_1:29514068-29514087 Msa0017670:intron 35.0%
TATAGTTGGCCAATATCAGA+TGG - chr1_1:29514126-29514145 None:intergenic 35.0%
GAAAGTTACTTGTGACATTG+TGG + chr1_1:29514187-29514206 Msa0017670:intron 35.0%
GAGAACTAACTCATGTATGT+TGG - chr1_1:29514255-29514274 None:intergenic 35.0%
AAGTCAAAAGCCATGTTAAC+AGG + chr1_1:29514311-29514330 Msa0017670:intron 35.0%
CTCAAAAACACCTGTTAACA+TGG - chr1_1:29514324-29514343 None:intergenic 35.0%
ACGGAGGGAATAGAAAAAAT+TGG - chr1_1:29514479-29514498 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1_1:29514498-29514517 None:intergenic 35.0%
TGGGTGGTTAAATATAGAGA+CGG + chr1_1:29515153-29515172 Msa0017670:intron 35.0%
TGGTTAAATATAGAGACGGA+GGG + chr1_1:29515157-29515176 Msa0017670:intron 35.0%
AGGGTAAAGGAATAATCGTA+GGG - chr1_1:29515365-29515384 None:intergenic 35.0%
!!! CCAATGATTTTTCAGGGTAA+AGG - chr1_1:29515378-29515397 None:intergenic 35.0%
CCTTTACCCTGAAAAATCAT+TGG + chr1_1:29515375-29515394 Msa0017670:intron 35.0%
GAAAGGAAATAAAGCTCTAC+AGG - chr1_1:29515460-29515479 None:intergenic 35.0%
GATAGCCAATTTCTCTGATA+TGG + chr1_1:29515529-29515548 Msa0017670:intron 35.0%
TGATATGGAAAATTTGGGAG+AGG + chr1_1:29515544-29515563 Msa0017670:intron 35.0%
AAGTATGTTCAAGAAACCTG+CGG - chr1_1:29515599-29515618 None:intergenic 35.0%
! CGGTTTTCTTAACAAGGAAT+TGG - chr1_1:29515647-29515666 None:intergenic 35.0%
!!! TCTCATCGGTTTTCTTAACA+AGG - chr1_1:29515653-29515672 None:intergenic 35.0%
TAAGAAAACCGATGAGAGAA+AGG + chr1_1:29515656-29515675 Msa0017670:intron 35.0%
TGCAATTACCTTTCTCTCAT+CGG - chr1_1:29515667-29515686 None:intergenic 35.0%
TCGAATGAATCTCTCTTGAT+CGG + chr1_1:29515723-29515742 Msa0017670:intron 35.0%
TGAAACAAGGCATGTGAAAA+AGG + chr1_1:29515884-29515903 Msa0017670:intron 35.0%
GAAACAAGGCATGTGAAAAA+GGG + chr1_1:29515885-29515904 Msa0017670:intron 35.0%
! CAACCCTCATTCAATTTTGT+AGG + chr1_1:29515928-29515947 Msa0017670:intron 35.0%
CATCCCTACAAAATTGAATG+AGG - chr1_1:29515935-29515954 None:intergenic 35.0%
! GATGTCATTTCCAGAGTAAA+CGG + chr1_1:29515951-29515970 Msa0017670:intron 35.0%
AGGGTGAAACAAATGCTAAA+AGG + chr1_1:29516050-29516069 Msa0017670:intron 35.0%
GGGTGAAACAAATGCTAAAA+GGG + chr1_1:29516051-29516070 Msa0017670:intron 35.0%
GGTGAAACAAATGCTAAAAG+GGG + chr1_1:29516052-29516071 Msa0017670:intron 35.0%
! GCCATTTAGGAAATTTTACC+TGG - chr1_1:29516131-29516150 None:intergenic 35.0%
TGGTCGATAATTAGTACTCA+AGG - chr1_1:29516200-29516219 None:intergenic 35.0%
!!! TTTGGTTCGAGAGTTTTGAA+GGG + chr1_1:29516270-29516289 Msa0017670:intron 35.0%
GGTTGGAAGTTGTATTATCT+TGG + chr1_1:29516456-29516475 Msa0017670:intron 35.0%
! AAAAACGTGTTTGGTTCACA+AGG - chr1_1:29516723-29516742 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr1_1:29517683-29517702 Msa0017670:intron 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG + chr1_1:29517802-29517821 Msa0017670:intron 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG + chr1_1:29517802-29517821 Msa0017670:intron 35.0%
ACGAGCTTATAGCTTATTTC+AGG - chr1_1:29518993-29519012 None:intergenic 35.0%
TTCTTCACACTTATAGTGTG+TGG + chr1_1:29519424-29519443 Msa0017670:intron 35.0%
TCTTCACACTTATAGTGTGT+GGG + chr1_1:29519425-29519444 Msa0017670:intron 35.0%
AAGCAATTTCTTGACACACA+GGG - chr1_1:29519527-29519546 None:intergenic 35.0%
TAAGCAATTTCTTGACACAC+AGG - chr1_1:29519528-29519547 None:intergenic 35.0%
GTGCAAACGAATTTAATGTC+AGG - chr1_1:29519674-29519693 None:intergenic 35.0%
AGGTCATCCACATGAAATAA+AGG - chr1_1:29520088-29520107 None:intergenic 35.0%
TAGAAGTGATATCGGATACA+AGG - chr1_1:29520113-29520132 None:intergenic 35.0%
GTAAGTCAAAAACCATGCAT+TGG + chr1_1:29520650-29520669 Msa0017670:intron 35.0%
TATTTCACATGACCAATGCA+TGG - chr1_1:29520665-29520684 None:intergenic 35.0%
! CAAAATTGAGTTGTAAGGTG+AGG - chr1_1:29520775-29520794 None:intergenic 35.0%
TGCTATAAGATCTCTCACAT+TGG + chr1_1:29520865-29520884 Msa0017670:intron 35.0%
! GATGATAAAAATGAAGGCGT+TGG + chr1_1:29521137-29521156 Msa0017670:intron 35.0%
!! GCAAGTGGTTTTTCAATTCA+CGG - chr1_1:29521238-29521257 None:intergenic 35.0%
CACTATATTTCTTCAGCAAG+TGG - chr1_1:29521253-29521272 None:intergenic 35.0%
! CACTTGCTGAAGAAATATAG+TGG + chr1_1:29521251-29521270 Msa0017670:CDS 35.0%
GACAAAAGCTACTTAATTGG+TGG + chr1_1:29521342-29521361 Msa0017670:CDS 35.0%
!! TTACAAATGGCCTTATCCTT+CGG + chr1_1:29521373-29521392 Msa0017670:CDS 35.0%
TTATAACGTACCGAAGGATA+AGG - chr1_1:29521386-29521405 None:intergenic 35.0%
GAAATCTGATCTGATCCTAA+CGG - chr1_1:29521585-29521604 None:intergenic 35.0%
!! TGGTTTGGTTCAGTTTAGTT+TGG - chr1_1:29521625-29521644 None:intergenic 35.0%
ATGGAACATACATCACATTG+TGG - chr1_1:29521906-29521925 None:intergenic 35.0%
CACTATATAGGAATCAGAGA+AGG + chr1_1:29521973-29521992 Msa0017670:intron 35.0%
ATAAACTGCATGTCTTCTGA+TGG - chr1_1:29522079-29522098 None:intergenic 35.0%
ATCAGAAGACATGCAGTTTA+TGG + chr1_1:29522078-29522097 Msa0017670:CDS 35.0%
ATCATAATCATGGCCCTAAA+CGG - chr1_1:29522174-29522193 None:intergenic 35.0%
!! GATATATGAAGCGTTGATAC+TGG + chr1_1:29522191-29522210 Msa0017670:three_prime_UTR 35.0%
TGAACATTATCACCAATGTC+GGG + chr1_1:29522252-29522271 Msa0017670:three_prime_UTR 35.0%
GACATGCATAACATGAAACT+TGG + chr1_1:29522453-29522472 Msa0017670:three_prime_UTR 35.0%
GTGGTTGACAAGACTTTGTT+TGG - chr1_1:29510816-29510835 None:intergenic 40.0%
ATTAGAGAGAGAAGAGAGAG+TGG - chr1_1:29510877-29510896 None:intergenic 40.0%
GAGAGATGAGTGAAGATGAT+TGG - chr1_1:29510989-29511008 None:intergenic 40.0%
TTCTTGTACTCCATTGCTAG+TGG + chr1_1:29511355-29511374 Msa0017670:CDS 40.0%
! TTGGTTGTTTCCACTAGCAA+TGG - chr1_1:29511368-29511387 None:intergenic 40.0%
!! GTTGATGATTGTGTTGGTGT+TGG - chr1_1:29511399-29511418 None:intergenic 40.0%
AATCATCATCATCAAGGAGG+AGG + chr1_1:29511613-29511632 Msa0017670:CDS 40.0%
! TCTTTTTCTCTTGAAGGGCA+GGG - chr1_1:29511805-29511824 None:intergenic 40.0%
TGCCCTTCAAGAGAAAAAGA+GGG + chr1_1:29511805-29511824 Msa0017670:intron 40.0%
TCCAGAACTAGACCAATTCA+TGG + chr1_1:29512117-29512136 Msa0017670:CDS 40.0%
! ACCATGAATTGGTCTAGTTC+TGG - chr1_1:29512121-29512140 None:intergenic 40.0%
CTAGACCAATTCATGGTACA+AGG + chr1_1:29512124-29512143 Msa0017670:intron 40.0%
AGACCAATTCATGGTACAAG+GGG + chr1_1:29512126-29512145 Msa0017670:intron 40.0%
! TTCGATTTGCACTGTGATGT+CGG + chr1_1:29512241-29512260 Msa0017670:intron 40.0%
CATGCTTGTGAAGTATAGAG+AGG + chr1_1:29512353-29512372 Msa0017670:CDS 40.0%
! TCGAGTGTTTCTGAACATAC+TGG + chr1_1:29512669-29512688 Msa0017670:intron 40.0%
TCTCACATGCTTTCAAATCG+TGG + chr1_1:29512708-29512727 Msa0017670:intron 40.0%
CTCACATGCTTTCAAATCGT+GGG + chr1_1:29512709-29512728 Msa0017670:intron 40.0%
! AATGCTCCCTCTAAAAGGTT+AGG - chr1_1:29512937-29512956 None:intergenic 40.0%
ACAACAATGCTCCCTCTAAA+AGG - chr1_1:29512942-29512961 None:intergenic 40.0%
TAAAACGGAAATCCACACGT+TGG + chr1_1:29513016-29513035 Msa0017670:intron 40.0%
GGCAAATGTTAACCTATGCT+TGG + chr1_1:29513290-29513309 Msa0017670:intron 40.0%
!! ATTCCTTAACTTGTGCCCTT+AGG + chr1_1:29513427-29513446 Msa0017670:intron 40.0%
!! TTCCTTAACTTGTGCCCTTA+GGG + chr1_1:29513428-29513447 Msa0017670:intron 40.0%
CATGTTATCTTGTGCCCTAA+GGG - chr1_1:29513445-29513464 None:intergenic 40.0%
TCATGTTATCTTGTGCCCTA+AGG - chr1_1:29513446-29513465 None:intergenic 40.0%
AACTTCAAGTATGTTGGGGT+TGG - chr1_1:29513562-29513581 None:intergenic 40.0%
AGGGAACTTCAAGTATGTTG+GGG - chr1_1:29513566-29513585 None:intergenic 40.0%
GAGGGAACTTCAAGTATGTT+GGG - chr1_1:29513567-29513586 None:intergenic 40.0%
!! GTCAACTGTGTCACTTAACA+TGG - chr1_1:29513594-29513613 None:intergenic 40.0%
ACAGGTCATCTAATAAGGGA+CGG - chr1_1:29513765-29513784 None:intergenic 40.0%
CTAGGTCATCTAATATGGGA+CGG + chr1_1:29513985-29514004 Msa0017670:intron 40.0%
GGTCATTTATTGTAGAACGG+AGG + chr1_1:29514067-29514086 Msa0017670:intron 40.0%
GTTACTTGTGACATTGTGGT+TGG + chr1_1:29514191-29514210 Msa0017670:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_1:29514494-29514513 None:intergenic 40.0%
AAGTGTCCTTAGGCACTTAA+GGG - chr1_1:29514722-29514741 None:intergenic 40.0%
TCTTGCTAACAAGTGTCCTT+AGG - chr1_1:29514732-29514751 None:intergenic 40.0%
ATGTTACATTAAGGGACGGA+GGG - chr1_1:29514903-29514922 None:intergenic 40.0%
AGGGATGTTACATTAAGGGA+CGG - chr1_1:29514907-29514926 None:intergenic 40.0%
GTGGTTAAATATAGAGACGG+AGG + chr1_1:29515156-29515175 Msa0017670:intron 40.0%
GGGTAAAGGAATAATCGTAG+GGG - chr1_1:29515364-29515383 None:intergenic 40.0%
CAGGGTAAAGGAATAATCGT+AGG - chr1_1:29515366-29515385 None:intergenic 40.0%
TCTACAGGAAATGTTGTAGG+GGG - chr1_1:29515445-29515464 None:intergenic 40.0%
CTCTACAGGAAATGTTGTAG+GGG - chr1_1:29515446-29515465 None:intergenic 40.0%
GCTCTACAGGAAATGTTGTA+GGG - chr1_1:29515447-29515466 None:intergenic 40.0%
AGCTCTACAGGAAATGTTGT+AGG - chr1_1:29515448-29515467 None:intergenic 40.0%
TGGCTATCCTTCATCGAAAA+AGG - chr1_1:29515517-29515536 None:intergenic 40.0%
!! ATTTTAGCCATGTTGAACCG+TGG + chr1_1:29515568-29515587 Msa0017670:intron 40.0%
AATCTCTCTTGATCGGTGAT+GGG + chr1_1:29515730-29515749 Msa0017670:intron 40.0%
AGGGGTGAATGTATAAGTGT+TGG + chr1_1:29516101-29516120 Msa0017670:intron 40.0%
GGGGTGAATGTATAAGTGTT+GGG + chr1_1:29516102-29516121 Msa0017670:intron 40.0%
! GGGTGAATGTATAAGTGTTG+GGG + chr1_1:29516103-29516122 Msa0017670:intron 40.0%
! AGAGACATTTAGGGTCTGTT+TGG + chr1_1:29516252-29516271 Msa0017670:intron 40.0%
!! GTTTGGTTCGAGAGTTTTGA+AGG + chr1_1:29516269-29516288 Msa0017670:intron 40.0%
!!! TTGGTTCGAGAGTTTTGAAG+GGG + chr1_1:29516271-29516290 Msa0017670:intron 40.0%
!!! GTCTATCATTTTGGGACAGT+GGG + chr1_1:29517230-29517249 Msa0017670:intron 40.0%
! CAACTAGCTTATCAGTCATC+AGG - chr1_1:29517795-29517814 None:intergenic 40.0%
!! GGTAACACTTTAGCTCTGTT+TGG - chr1_1:29519020-29519039 None:intergenic 40.0%
ATACATTCTTCGGCTCTGTT+TGG - chr1_1:29519115-29519134 None:intergenic 40.0%
! GGCTGTTCCTTTATTTCATG+TGG + chr1_1:29520078-29520097 Msa0017670:intron 40.0%
ACTCTAACGTAGAGTTCAGT+CGG - chr1_1:29520350-29520369 None:intergenic 40.0%
ACTGAACTCTACGTTAGAGT+TGG + chr1_1:29520350-29520369 Msa0017670:intron 40.0%
! ATTTGGGATGAGCCTAACTT+AGG - chr1_1:29520962-29520981 None:intergenic 40.0%
GGCTCATCCCAAATTCTTAA+AGG + chr1_1:29520968-29520987 Msa0017670:intron 40.0%
GAAGAGGATCAAGAGAATAG+TGG + chr1_1:29521167-29521186 Msa0017670:CDS 40.0%
! AGCTTTTGTCTAGCCTCTTT+AGG - chr1_1:29521332-29521351 None:intergenic 40.0%
GGTGGGAATTGCATTACAAA+TGG + chr1_1:29521360-29521379 Msa0017670:CDS 40.0%
GGAGATTTATAACGTACCGA+AGG - chr1_1:29521392-29521411 None:intergenic 40.0%
GAAGAATGTGAGAAGAGAGT+AGG - chr1_1:29521413-29521432 None:intergenic 40.0%
ATTGGCTGAATCAACAGGTT+TGG + chr1_1:29522000-29522019 Msa0017670:CDS 40.0%
GGTTCATCAATCAAAGGAAG+AGG + chr1_1:29522044-29522063 Msa0017670:CDS 40.0%
AGACATGCAGTTTATGGTGA+TGG + chr1_1:29522084-29522103 Msa0017670:CDS 40.0%
!! ATGCAGTTTATGGTGATGGA+TGG + chr1_1:29522088-29522107 Msa0017670:CDS 40.0%
ATATAAAGAGCTGCACTCTG+TGG - chr1_1:29522121-29522140 None:intergenic 40.0%
ACAGAGTGCAGCTCTTTATA+TGG + chr1_1:29522120-29522139 Msa0017670:CDS 40.0%
AGTGCAGCTCTTTATATGGA+TGG + chr1_1:29522124-29522143 Msa0017670:CDS 40.0%
ACCAGCCGTAATTTGAGAAA+TGG + chr1_1:29522223-29522242 Msa0017670:three_prime_UTR 40.0%
TCCATTTCTCAAATTACGGC+TGG - chr1_1:29522227-29522246 None:intergenic 40.0%
GAACATTATCACCAATGTCG+GGG + chr1_1:29522253-29522272 Msa0017670:three_prime_UTR 40.0%
AATTACGTACTCCTACACTC+TGG + chr1_1:29522569-29522588 Msa0017670:three_prime_UTR 40.0%
CTACACACACGACTCATTTA+AGG - chr1_1:29522689-29522708 None:intergenic 40.0%
ACCAGCAATGTCTTGGAGAT+GGG - chr1_1:29510840-29510859 None:intergenic 45.0%
AACCAGCAATGTCTTGGAGA+TGG - chr1_1:29510841-29510860 None:intergenic 45.0%
! TCTCCAAGACATTGCTGGTT+TGG + chr1_1:29510841-29510860 Msa0017670:five_prime_UTR 45.0%
AGTCCAAACCAGCAATGTCT+TGG - chr1_1:29510847-29510866 None:intergenic 45.0%
TGTGTTGTGTTGGGGTAAAG+GGG - chr1_1:29511047-29511066 None:intergenic 45.0%
GTGTGTTGTGTTGGGGTAAA+GGG - chr1_1:29511048-29511067 None:intergenic 45.0%
TGTGTGTTGTGTTGGGGTAA+AGG - chr1_1:29511049-29511068 None:intergenic 45.0%
!! GATTGTGTTGGTGTTGGTGT+TGG - chr1_1:29511393-29511412 None:intergenic 45.0%
ATCATCATCAAGGAGGAGGA+GGG + chr1_1:29511617-29511636 Msa0017670:CDS 45.0%
! CTCTTTTTCTCTTGAAGGGC+AGG - chr1_1:29511806-29511825 None:intergenic 45.0%
CTGCCCTTCAAGAGAAAAAG+AGG + chr1_1:29511804-29511823 Msa0017670:intron 45.0%
TATGTAGATTGGAGCTCCAC+CGG + chr1_1:29512009-29512028 Msa0017670:intron 45.0%
! CTAGGCAAGAGTTTGAAGCA+AGG + chr1_1:29512056-29512075 Msa0017670:CDS 45.0%
GACCAATTCATGGTACAAGG+GGG + chr1_1:29512127-29512146 Msa0017670:intron 45.0%
TACCCCCTTGTACCATGAAT+TGG - chr1_1:29512132-29512151 None:intergenic 45.0%
AAGGCCTATACAAGAGGCTA+TGG + chr1_1:29512383-29512402 Msa0017670:CDS 45.0%
TGTCACTGATGTGTGAGTGA+CGG + chr1_1:29512618-29512637 Msa0017670:intron 45.0%
TTTCAAATCGTGGGAGCAGA+AGG + chr1_1:29512718-29512737 Msa0017670:intron 45.0%
TTCAAATCGTGGGAGCAGAA+GGG + chr1_1:29512719-29512738 Msa0017670:intron 45.0%
!! CTCGGGTTTATCGGTTTCTA+AGG + chr1_1:29513140-29513159 Msa0017670:intron 45.0%
AAACGGCATTAGCGGTAAGA+CGG - chr1_1:29513239-29513258 None:intergenic 45.0%
AAGTATGTTGGGGGTTGGAT+TGG - chr1_1:29513514-29513533 None:intergenic 45.0%
GGAGGGAACTTCAAGTATGT+TGG - chr1_1:29513568-29513587 None:intergenic 45.0%
!! GTCACTTAACATGGGTTGGA+GGG - chr1_1:29513585-29513604 None:intergenic 45.0%
!! TGTCACTTAACATGGGTTGG+AGG - chr1_1:29513586-29513605 None:intergenic 45.0%
!! CTGTGTCACTTAACATGGGT+TGG - chr1_1:29513589-29513608 None:intergenic 45.0%
GTCATCTAATAAGGGACGGA+GGG - chr1_1:29513761-29513780 None:intergenic 45.0%
GTCATCTAATATGGGACGGA+GGG + chr1_1:29513989-29514008 Msa0017670:intron 45.0%
GAGTAGTACTTGGGTGACAT+TGG + chr1_1:29514090-29514109 Msa0017670:intron 45.0%
GTGCCAATGCCATCTGATAT+TGG + chr1_1:29514114-29514133 Msa0017670:intron 45.0%
TGGCCAATATCAGATGGCAT+TGG - chr1_1:29514120-29514139 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_1:29514495-29514514 None:intergenic 45.0%
CAAGTGTCCTTAGGCACTTA+AGG - chr1_1:29514723-29514742 None:intergenic 45.0%
GATGTTACATTAAGGGACGG+AGG - chr1_1:29514904-29514923 None:intergenic 45.0%
TACAGGAAATGTTGTAGGGG+GGG - chr1_1:29515443-29515462 None:intergenic 45.0%
CTACAGGAAATGTTGTAGGG+GGG - chr1_1:29515444-29515463 None:intergenic 45.0%
TGTTCAAGAAACCTGCGGTT+TGG - chr1_1:29515594-29515613 None:intergenic 45.0%
GAATCTCTCTTGATCGGTGA+TGG + chr1_1:29515729-29515748 Msa0017670:intron 45.0%
!! TGTATAAGTGTTGGGGTACC+AGG + chr1_1:29516110-29516129 Msa0017670:intron 45.0%
AGAGGATCGTTGCATACTCA+AGG + chr1_1:29516174-29516193 Msa0017670:intron 45.0%
!!! TTCGAGAGTTTTGAAGGGGA+GGG + chr1_1:29516275-29516294 Msa0017670:intron 45.0%
!! TTTTAAGAAAGGGAGGGGAG+AGG + chr1_1:29516334-29516353 Msa0017670:intron 45.0%
!! GTTGGTTCGAGAATTAGGAG+GGG - chr1_1:29516774-29516793 None:intergenic 45.0%
!! CGTTGGTTCGAGAATTAGGA+GGG - chr1_1:29516775-29516794 None:intergenic 45.0%
CCTCCTAATTCTCGAACCAA+CGG + chr1_1:29516773-29516792 Msa0017670:intron 45.0%
!!! GGTCTATCATTTTGGGACAG+TGG + chr1_1:29517229-29517248 Msa0017670:intron 45.0%
ATGTCTCTCGATGTGATGCA+CGG + chr1_1:29520056-29520075 Msa0017670:intron 45.0%
GTGATATCGGATACAAGGTC+AGG - chr1_1:29520108-29520127 None:intergenic 45.0%
GTAGAGTTCAGTCGGAAGTA+AGG - chr1_1:29520342-29520361 None:intergenic 45.0%
GAGGATCAAGAGAATAGTGG+TGG + chr1_1:29521170-29521189 Msa0017670:CDS 45.0%
GGAATCAGAGAAGGTAGCAT+TGG + chr1_1:29521982-29522001 Msa0017670:intron 45.0%
!! GTAGCATTGGCTGAATCAAC+AGG + chr1_1:29521995-29522014 Msa0017670:CDS 45.0%
! TCAATCAAAGGAAGAGGCAC+TGG + chr1_1:29522050-29522069 Msa0017670:CDS 45.0%
GATGGTCATTACATGGCTGA+TGG + chr1_1:29522142-29522161 Msa0017670:CDS 45.0%
AATCATGGCCCTAAACGGTA+GGG - chr1_1:29522169-29522188 None:intergenic 45.0%
TAATCATGGCCCTAAACGGT+AGG - chr1_1:29522170-29522189 None:intergenic 45.0%
AGTTGTCACTACCAGAGTGT+AGG - chr1_1:29522583-29522602 None:intergenic 45.0%
! TGGTATTTGGAGTGCTCAGA+AGG + chr1_1:29522722-29522741 Msa0017670:three_prime_UTR 45.0%
!! AATATATATATAAAAAAATG+GGG - chr1_1:29511952-29511971 None:intergenic 5.0%
!! CAATAATAAATATTATTATA+AGG - chr1_1:29516424-29516443 None:intergenic 5.0%
!!! TTATTATTGTTATTATTATT+AGG + chr1_1:29516435-29516454 Msa0017670:intron 5.0%
!!! TTTTATTAAATTATTGTTTT+CGG + chr1_1:29517947-29517966 Msa0017670:intron 5.0%
!! CAATAATAAAAAATAAAAAA+AGG - chr1_1:29519988-29520007 None:intergenic 5.0%
CAGCAATGTCTTGGAGATGG+GGG - chr1_1:29510838-29510857 None:intergenic 50.0%
CCAGCAATGTCTTGGAGATG+GGG - chr1_1:29510839-29510858 None:intergenic 50.0%
AGAGAGAGAAGAGAGAGTGG+TGG - chr1_1:29510874-29510893 None:intergenic 50.0%
!!! GATTTTGGGCATTGACAGGG+TGG - chr1_1:29510958-29510977 None:intergenic 50.0%
!! GTTGGTGTTGGTGTTGGTGT+TGG - chr1_1:29511387-29511406 None:intergenic 50.0%
CATCATCATCAAGGAGGAGG+AGG + chr1_1:29511616-29511635 Msa0017670:CDS 50.0%
GCTTCACCACTAGAACTGCT+TGG - chr1_1:29511646-29511665 None:intergenic 50.0%
CACTTTGCAATGGACCCCTT+CGG + chr1_1:29512439-29512458 Msa0017670:CDS 50.0%
GTCACTGATGTGTGAGTGAC+GGG + chr1_1:29512619-29512638 Msa0017670:intron 50.0%
AACATAGAGTCGCCAACGTG+TGG - chr1_1:29513031-29513050 None:intergenic 50.0%
ACACGTTGGCGACTCTATGT+TGG + chr1_1:29513030-29513049 Msa0017670:intron 50.0%
CACGTTGGCGACTCTATGTT+GGG + chr1_1:29513031-29513050 Msa0017670:intron 50.0%
! CAGAACTCAGGAGCTAGCTT+TGG - chr1_1:29513066-29513085 None:intergenic 50.0%
ACCTATGCTTGGGGCTGTTA+AGG + chr1_1:29513301-29513320 Msa0017670:intron 50.0%
TCCTTAACAGCCCCAAGCAT+AGG - chr1_1:29513305-29513324 None:intergenic 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG - chr1_1:29513433-29513452 None:intergenic 50.0%
! TGTTGGGGGTTGGATTGGAA+TGG - chr1_1:29513509-29513528 None:intergenic 50.0%
GGTCATCTAATAAGGGACGG+AGG - chr1_1:29513762-29513781 None:intergenic 50.0%
GGTCATCTAATATGGGACGG+AGG + chr1_1:29513988-29514007 Msa0017670:intron 50.0%
AGAACGGAGGGAGTAGTACT+TGG + chr1_1:29514080-29514099 Msa0017670:intron 50.0%
GAACGGAGGGAGTAGTACTT+GGG + chr1_1:29514081-29514100 Msa0017670:intron 50.0%
CAAGTGCCCTTAAGTGCCTA+AGG + chr1_1:29514713-29514732 Msa0017670:intron 50.0%
!!! GTTCGAGAGTTTTGAAGGGG+AGG + chr1_1:29516274-29516293 Msa0017670:intron 50.0%
!!! TCGAGAGTTTTGAAGGGGAG+GGG + chr1_1:29516276-29516295 Msa0017670:intron 50.0%
! TGTTTGGTTCACAAGGCGAG+GGG - chr1_1:29516716-29516735 None:intergenic 50.0%
! GTGTTTGGTTCACAAGGCGA+GGG - chr1_1:29516717-29516736 None:intergenic 50.0%
TTCGAGAATTAGGAGGGGAG+GGG - chr1_1:29516769-29516788 None:intergenic 50.0%
GTTCGAGAATTAGGAGGGGA+GGG - chr1_1:29516770-29516789 None:intergenic 50.0%
!! CCGTTGGTTCGAGAATTAGG+AGG - chr1_1:29516776-29516795 None:intergenic 50.0%
!! GGTCCGTTGGTTCGAGAATT+AGG - chr1_1:29516779-29516798 None:intergenic 50.0%
TTGTGGACTTAAGGGTCCGT+TGG - chr1_1:29516792-29516811 None:intergenic 50.0%
CTTCTGTCTTGGGCTCTGTT+TGG + chr1_1:29517671-29517690 Msa0017670:intron 50.0%
TTCTTGACACACAGGGACAC+AGG - chr1_1:29519520-29519539 None:intergenic 50.0%
CATCACATCGAGAGACATGC+GGG - chr1_1:29520054-29520073 None:intergenic 50.0%
GCATCACATCGAGAGACATG+CGG - chr1_1:29520055-29520074 None:intergenic 50.0%
TGTCTCTCGATGTGATGCAC+GGG + chr1_1:29520057-29520076 Msa0017670:intron 50.0%
!! AGGCGTTGGTTCATCAGAAG+AGG + chr1_1:29521151-29521170 Msa0017670:CDS 50.0%
TCTGCTCGAGGATCAATCTC+TGG - chr1_1:29521212-29521231 None:intergenic 50.0%
AATTCACGGTCTTCTGCTCG+AGG - chr1_1:29521224-29521243 None:intergenic 50.0%
CTGATGGTCCCTACCGTTTA+GGG + chr1_1:29522158-29522177 Msa0017670:CDS 50.0%
CATTATCACCAATGTCGGGG+TGG + chr1_1:29522256-29522275 Msa0017670:three_prime_UTR 50.0%
CAATGTCTTGGAGATGGGGG+TGG - chr1_1:29510835-29510854 None:intergenic 55.0%
CCCCATCTCCAAGACATTGC+TGG + chr1_1:29510836-29510855 Msa0017670:five_prime_UTR 55.0%
! GGGAGTCCAAGCAGTTCTAG+TGG + chr1_1:29511637-29511656 Msa0017670:CDS 55.0%
ACCAAACGAGCCACCACTTC+CGG - chr1_1:29512031-29512050 None:intergenic 55.0%
TGGCTCGTTTGGTTGCGTCT+AGG + chr1_1:29512038-29512057 Msa0017670:CDS 55.0%
TCACCAGGGAAGATCCGAAG+GGG - chr1_1:29512456-29512475 None:intergenic 55.0%
CTCACCAGGGAAGATCCGAA+GGG - chr1_1:29512457-29512476 None:intergenic 55.0%
ACTCACCAGGGAAGATCCGA+AGG - chr1_1:29512458-29512477 None:intergenic 55.0%
AATCGTGGGAGCAGAAGGGT+AGG + chr1_1:29512723-29512742 Msa0017670:intron 55.0%
ATCGTGGGAGCAGAAGGGTA+GGG + chr1_1:29512724-29512743 Msa0017670:intron 55.0%
GGTTTGGCCACGGTTCAACA+TGG - chr1_1:29515578-29515597 None:intergenic 55.0%
! AGAAACCTGCGGTTTGGCCA+CGG - chr1_1:29515588-29515607 None:intergenic 55.0%
!!! AGAGTTTTGAAGGGGAGGGG+AGG + chr1_1:29516279-29516298 Msa0017670:intron 55.0%
!!! GAGTTTTGAAGGGGAGGGGA+GGG + chr1_1:29516280-29516299 Msa0017670:intron 55.0%
!!! AGTTTTGAAGGGGAGGGGAG+GGG + chr1_1:29516281-29516300 Msa0017670:intron 55.0%
AAGAAAGGGAGGGGAGAGGA+AGG + chr1_1:29516338-29516357 Msa0017670:intron 55.0%
AGAAAGGGAGGGGAGAGGAA+GGG + chr1_1:29516339-29516358 Msa0017670:intron 55.0%
! CGTGTTTGGTTCACAAGGCG+AGG - chr1_1:29516718-29516737 None:intergenic 55.0%
AGAATTAGGAGGGGAGGGGA+GGG - chr1_1:29516765-29516784 None:intergenic 55.0%
GGTTCGAGAATTAGGAGGGG+AGG - chr1_1:29516771-29516790 None:intergenic 55.0%
TTGACACACAGGGACACAGG+AGG - chr1_1:29519517-29519536 None:intergenic 55.0%
GCTGATGGTCCCTACCGTTT+AGG + chr1_1:29522157-29522176 Msa0017670:CDS 55.0%
TATCACCAATGTCGGGGTGG+TGG + chr1_1:29522259-29522278 Msa0017670:three_prime_UTR 55.0%
!! GGGCATTGACAGGGTGGAGA+AGG - chr1_1:29510952-29510971 None:intergenic 60.0%
GATTGGAGCTCCACCGGAAG+TGG + chr1_1:29512015-29512034 Msa0017670:intron 60.0%
AAACGAGCCACCACTTCCGG+TGG - chr1_1:29512028-29512047 None:intergenic 60.0%
ACCGGAAGTGGTGGCTCGTT+TGG + chr1_1:29512027-29512046 Msa0017670:CDS 60.0%
TTGAACCGTGGCCAAACCGC+AGG + chr1_1:29515580-29515599 Msa0017670:intron 60.0%
TTGGTTCACAAGGCGAGGGG+AGG - chr1_1:29516713-29516732 None:intergenic 60.0%
GAATTAGGAGGGGAGGGGAG+GGG - chr1_1:29516764-29516783 None:intergenic 60.0%
GAGAATTAGGAGGGGAGGGG+AGG - chr1_1:29516766-29516785 None:intergenic 60.0%
! ACCAATGTCGGGGTGGTGGT+TGG + chr1_1:29522263-29522282 Msa0017670:three_prime_UTR 60.0%
TCCAACCACCACCCCGACAT+TGG - chr1_1:29522267-29522286 None:intergenic 60.0%
TGGAGCTCCACCGGAAGTGG+TGG + chr1_1:29512018-29512037 Msa0017670:CDS 65.0%
GGACCCCTTCGGATCTTCCC+TGG + chr1_1:29512450-29512469 Msa0017670:CDS 65.0%
TAGGAGGGGAGGGGAGGGGA+GGG - chr1_1:29516760-29516779 None:intergenic 70.0%
TTAGGAGGGGAGGGGAGGGG+AGG - chr1_1:29516761-29516780 None:intergenic 70.0%
AGGAGGGGAGGGGAGGGGAG+GGG - chr1_1:29516759-29516778 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29510811 29522794 29510811 ID=Msa0017670;Name=Msa0017670
chr1_1 mRNA 29510811 29522794 29510811 ID=Msa0017670-mRNA-1;Parent=Msa0017670;Name=Msa0017670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=481|1|1|1|1|1|5|608|388
chr1_1 exon 29510811 29511741 29510811 ID=Msa0017670-mRNA-1:exon:9844;Parent=Msa0017670-mRNA-1
chr1_1 exon 29512016 29512138 29512016 ID=Msa0017670-mRNA-1:exon:9845;Parent=Msa0017670-mRNA-1
chr1_1 exon 29512339 29512471 29512339 ID=Msa0017670-mRNA-1:exon:9846;Parent=Msa0017670-mRNA-1
chr1_1 exon 29521138 29521394 29521138 ID=Msa0017670-mRNA-1:exon:9847;Parent=Msa0017670-mRNA-1
chr1_1 exon 29521983 29522794 29521983 ID=Msa0017670-mRNA-1:exon:9848;Parent=Msa0017670-mRNA-1
chr1_1 five_prime_UTR 29510811 29511291 29510811 ID=Msa0017670-mRNA-1:five_prime_utr;Parent=Msa0017670-mRNA-1
chr1_1 CDS 29511292 29511741 29511292 ID=Msa0017670-mRNA-1:cds;Parent=Msa0017670-mRNA-1
chr1_1 CDS 29512016 29512138 29512016 ID=Msa0017670-mRNA-1:cds;Parent=Msa0017670-mRNA-1
chr1_1 CDS 29512339 29512471 29512339 ID=Msa0017670-mRNA-1:cds;Parent=Msa0017670-mRNA-1
chr1_1 CDS 29521138 29521394 29521138 ID=Msa0017670-mRNA-1:cds;Parent=Msa0017670-mRNA-1
chr1_1 CDS 29521983 29522186 29521983 ID=Msa0017670-mRNA-1:cds;Parent=Msa0017670-mRNA-1
chr1_1 three_prime_UTR 29522187 29522794 29522187 ID=Msa0017670-mRNA-1:three_prime_utr;Parent=Msa0017670-mRNA-1
Gene Sequence

>Msa0017670

ATGGAGGAATACACTAATAATCCAAATCCAAATCCAAATTCAAATCAAAGTTCAAGGCCAAATTTCTTGTACTCCATTGCTAGTGGAAACAACCAACACCAACACCAACACCAACACAATCATCAACATAATCAGATTCCAATGAACAACTTTCATCTTCAATCAAATGGATCAGACAATTGTTTTCAACCTGATCAAGTACAACATCAACACTCTGCTGTGAAAACTGAAGCAAATAGTACTTCACAACTTCACACTCCGATTTTTCATTACCCAGCTTTAATGAGAACAAATATTATTCCACACACCAATATTATGCATAATCATCATCATCAAGGAGGAGGAGGGAGTCCAAGCAGTTCTAGTGGTGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTGGTGGCTCGTTTGGTTGCGTCTAGGCAAGAGTTTGAAGCAAGGCAAAGATCTTCAGTTAACTCAAGAGAAGCTTCTAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACTCAGCTAAATACACTTTGCAATGGACCCCTTCGGATCTTCCCTGATGATAAAAATGAAGGCGTTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCAGAGATTGATCCTCGAGCAGAAGACCGTGAATTGAAAAACCACTTGCTGAAGAAATATAGTGGTTACTTGAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTACCTAAAGAGGCTAGACAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATCAATCAAAGGAAGAGGCACTGGAAACCATCAGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGTCCCTACCGTTTAGGGCCATGA
Protein sequence

>Msa0017670

MEEYTNNPNPNPNSNQSSRPNFLYSIASGNNQHQHQHQHNHQHNQIPMNNFHLQSNGSDNCFQPDQVQHQHSAVKTEANSTSQLHTPIFHYPALMRTNIIPHTNIMHNHHHQGGGGSPSSSSGEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARLVASRQEFEARQRSSVNSREASKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPLRIFPDDKNEGVGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP*