AlfalfaGEDB | Msa0792370

M. sativa cultivar zhongmu-4 / Msa0792370

KEGG: K16670
GO: GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03790.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792370	sp\|O04135\|KNAP2_MALDO	65.558	421	88	14	1	388	1	397	1.15e-164	469

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792370	X2D315	95.630	389	6	4	1	388	1	379	0.0	760

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TFs/TRs:

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Gene ID	Type	Classification
Msa0792370	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0792370	0.862843	3.801381e-64	-8.615850e-47
Msa0001940	Msa0792370	0.857294	1.800012e-62	-8.615850e-47
Msa0002580	Msa0792370	0.859309	4.522514e-63	-8.615850e-47
Msa0003080	Msa0792370	0.813423	2.578754e-51	-8.615850e-47
Msa0005890	Msa0792370	0.816059	6.720530e-52	-8.615850e-47
Msa0017670	Msa0792370	0.962595	4.583390e-121	-8.615850e-47
Msa0017930	Msa0792370	0.854293	1.355208e-61	-8.615850e-47
Msa0017950	Msa0792370	0.863088	3.194708e-64	-8.615850e-47
Msa0025160	Msa0792370	0.842228	2.938496e-58	-8.615850e-47
Msa0027280	Msa0792370	0.827034	1.954992e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792370	MtrunA17_Chr1g0151961	95.630	389	6	4	1	388	1	379	0.0	760
Msa0792370	MtrunA17_Chr2g0289201	58.730	252	90	3	128	375	117	358	3.12e-89	274
Msa0792370	MtrunA17_Chr5g0413201	48.377	308	146	4	64	365	8	308	8.71e-86	263
Msa0792370	MtrunA17_Chr5g0439391	55.187	241	94	3	128	364	46	276	2.10e-71	225
Msa0792370	MtrunA17_Chr1g0192791	48.413	252	117	4	128	371	19	265	8.80e-70	220
Msa0792370	MtrunA17_Chr2g0305101	33.463	257	149	5	117	351	83	339	1.51e-37	139
Msa0792370	MtrunA17_Chr1g0149651	32.342	269	151	6	114	351	152	420	3.41e-35	134
Msa0792370	MtrunA17_Chr5g0398181	31.418	261	139	5	124	351	23	276	9.07e-34	127
Msa0792370	MtrunA17_Chr3g0137241	31.724	290	153	9	105	351	68	355	2.50e-33	127
Msa0792370	MtrunA17_Chr4g0065241	32.800	250	146	5	124	351	66	315	3.50e-33	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792370	AT4G08150.1	70.710	338	75	8	59	388	77	398	5.02e-155	442
Msa0792370	AT1G62360.1	57.037	270	105	3	104	367	95	359	1.06e-89	276
Msa0792370	AT1G23380.1	56.904	239	96	3	127	363	84	317	5.96e-85	261
Msa0792370	AT1G23380.2	56.432	241	96	4	127	363	84	319	6.02e-83	256
Msa0792370	AT1G70510.1	53.165	237	108	1	127	363	68	301	1.74e-78	244
Msa0792370	AT1G70510.2	52.282	241	108	2	127	363	68	305	3.35e-76	239
Msa0792370	AT5G25220.2	33.700	273	143	8	114	351	134	403	1.99e-35	135
Msa0792370	AT5G25220.1	33.700	273	143	8	114	351	134	403	2.38e-35	135
Msa0792370	AT1G62990.1	30.996	271	146	7	113	351	14	275	2.76e-35	131
Msa0792370	AT5G11060.1	33.603	247	137	7	129	351	124	367	1.23e-33	129

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Find 139 sgRNAs with CRISPR-Local

Find 662 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGCCACCACTTCCGG+TGG	0.627824	5_3:-3567979	None:intergenic
AAATCCATAGCCTCTTGTAT+AGG	0.443002	5_3:-3568341	None:intergenic
AACCAGCAATGTCTTGGAGA+TGG	0.505140	5_3:-3566795	None:intergenic
AACTCAATTCTCAAAATATA+GGG	0.344206	5_3:-3567168	None:intergenic
AACTTTCATCTTCAATCAAG+TGG	0.468283	5_3:+3567393	Msa0792370:CDS
AAGGCCTATACAAGAGGCTA+TGG	0.514686	5_3:+3568337	Msa0792370:CDS
AATCATCATCATCAAGGAGG+AGG	0.600518	5_3:+3567567	Msa0792370:CDS
AATCATGGCCCTAAACGGTA+GGG	0.623950	5_3:-3577836	None:intergenic
AATTACGTACTCCTATACTC+TGG	0.664087	5_3:+3578239	Msa0792370:three_prime_UTR
AATTCACGGTCTTCTGCTCG+AGG	0.528363	5_3:-3576886	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGATGAAAGTTGTTCAT+TGG	-	chr5_3:3567387-3567406	None:intergenic	30.0%
AACTTTCATCTTCAATCAAG+TGG	+	chr5_3:3567393-3567412	Msa0792370:CDS	30.0%
TTATGCATAATATTGGTGTG+TGG	-	chr5_3:3567549-3567568	None:intergenic	30.0%
ATGCATAATCATCATCATCA+AGG	+	chr5_3:3567561-3567580	Msa0792370:CDS	30.0%
AGTATAGAGAGGAATTAACA+AGG	+	chr5_3:3568318-3568337	Msa0792370:CDS	30.0%
ACTCTTTCTCATCATTACAT+TGG	+	chr5_3:3569174-3569193	Msa0792370:intron	30.0%
TCAAACAGGTCATCTAATAA+GGG	-	chr5_3:3569743-3569762	None:intergenic	30.0%
GTTAACTAGGTCATCTAATA+TGG	+	chr5_3:3569954-3569973	Msa0792370:intron	30.0%
CTAGGTCATTTATTGTAGAA+CGG	+	chr5_3:3570038-3570057	Msa0792370:intron	30.0%
AGAACTAACTCATGTATGTT+GGG	-	chr5_3:3570229-3570248	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	3566768	3578464	3566768	ID=Msa0792370;Name=Msa0792370
chr5_3	mRNA	3566768	3578464	3566768	ID=Msa0792370-mRNA-1;Parent=Msa0792370;Name=Msa0792370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=478\|1\|1\|1\|1\|1\|5\|608\|388
chr5_3	exon	3566768	3567695	3566768	ID=Msa0792370-mRNA-1:exon:1568;Parent=Msa0792370-mRNA-1
chr5_3	exon	3567970	3568092	3567970	ID=Msa0792370-mRNA-1:exon:1569;Parent=Msa0792370-mRNA-1
chr5_3	exon	3568293	3568425	3568293	ID=Msa0792370-mRNA-1:exon:1570;Parent=Msa0792370-mRNA-1
chr5_3	exon	3576803	3577059	3576803	ID=Msa0792370-mRNA-1:exon:1571;Parent=Msa0792370-mRNA-1
chr5_3	exon	3577653	3578464	3577653	ID=Msa0792370-mRNA-1:exon:1572;Parent=Msa0792370-mRNA-1
chr5_3	five_prime_UTR	3566768	3567245	3566768	ID=Msa0792370-mRNA-1:five_prime_utr;Parent=Msa0792370-mRNA-1
chr5_3	CDS	3567246	3567695	3567246	ID=Msa0792370-mRNA-1:cds;Parent=Msa0792370-mRNA-1
chr5_3	CDS	3567970	3568092	3567970	ID=Msa0792370-mRNA-1:cds;Parent=Msa0792370-mRNA-1
chr5_3	CDS	3568293	3568425	3568293	ID=Msa0792370-mRNA-1:cds;Parent=Msa0792370-mRNA-1
chr5_3	CDS	3576803	3577059	3576803	ID=Msa0792370-mRNA-1:cds;Parent=Msa0792370-mRNA-1
chr5_3	CDS	3577653	3577856	3577653	ID=Msa0792370-mRNA-1:cds;Parent=Msa0792370-mRNA-1
chr5_3	three_prime_UTR	3577857	3578464	3577857	ID=Msa0792370-mRNA-1:three_prime_utr;Parent=Msa0792370-mRNA-1

Gene Sequence

>Msa0792370

ATGGAGGAATACACTAATAATCCAAATCCAAATTCAAATCAAAGTTCTAGGCCAAATTTCTTGTACTCCATTGCTAGTGGAAACAACCAACACCAACACCAACACCAACACCAACACAATCATCAACATAATCAGATTCCAATGAACAACTTTCATCTTCAATCAAGTGGACCAGACAATTGTTTTCAACCTGATCAAGTACAACATCAACACTCTGCTGTGAAAACTGAAGCAAATAGTACTTCACAACTTCACACTCCGATTTTTCACTACCCAGCTTTAATGAGAACAAATATTATTCCACACACCAATATTATGCATAATCATCATCATCAAGGAGGAGGAGGGAGTCCAAGCAGTTCTAGTGGTGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTGGTGGCTCGTTTGGTTGCGTCTAGGCAAGAGTTTGAAGCAAGGCAAAGATCTTCAGTTAACTCAAGAGAAGCTTCTAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACTCAGCTAAATACACTTTGCAATGGACCCCTTCGGATCTTCCCTGATGATAAAAATGAAGGCGTTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCAGAGATTGATCCTCGAGCAGAAGACCGTGAATTGAAAAACCACTTGCTGAAGAAATATAGTGGTTACTTGAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTACCTAAAGAGGCTAGACAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATCAATCAAAGGAAGAGGCACTGGAAACCATCAGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGTCCCTACCGTTTAGGGCCATGA

Protein sequence

>Msa0792370

MEEYTNNPNPNSNQSSRPNFLYSIASGNNQHQHQHQHQHNHQHNQIPMNNFHLQSSGPDNCFQPDQVQHQHSAVKTEANSTSQLHTPIFHYPALMRTNIIPHTNIMHNHHHQGGGGSPSSSSGEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARLVASRQEFEARQRSSVNSREASKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPLRIFPDDKNEGVGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP*