Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220950 | XP_013465165.1 | 92.281 | 285 | 3 | 1 | 2 | 267 | 3 | 287 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220950 | sp|Q9ZNT7|PHB2_ARATH | 75.524 | 286 | 50 | 2 | 1 | 266 | 1 | 286 | 9.82e-148 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220950 | A0A072VM16 | 92.281 | 285 | 3 | 1 | 2 | 267 | 3 | 287 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220950 | Msa0337750 | 0.852024 | 6.054849e-61 | -8.615850e-47 |
| Msa0220950 | Msa0943180 | 0.864008 | 1.656307e-64 | -8.615850e-47 |
| Msa0220950 | Msa0979820 | 0.840267 | 9.637014e-58 | -8.615850e-47 |
| Msa0220950 | Msa1433910 | 0.962616 | 4.334763e-121 | -8.615850e-47 |
| Msa0220950 | Msa1453530 | 0.804715 | 1.891135e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220950 | MtrunA17_Chr2g0325011 | 92.254 | 284 | 3 | 1 | 3 | 267 | 1 | 284 | 0.0 | 514 |
| Msa0220950 | MtrunA17_Chr4g0040101 | 78.521 | 284 | 42 | 1 | 3 | 267 | 1 | 284 | 1.13e-158 | 442 |
| Msa0220950 | MtrunA17_Chr8g0356051 | 49.802 | 253 | 105 | 3 | 25 | 255 | 20 | 272 | 7.88e-79 | 239 |
| Msa0220950 | MtrunA17_Chr3g0079011 | 47.500 | 280 | 120 | 5 | 10 | 266 | 3 | 278 | 4.41e-78 | 237 |
| Msa0220950 | MtrunA17_Chr5g0444361 | 29.282 | 181 | 94 | 4 | 3 | 163 | 12 | 178 | 9.66e-19 | 81.3 |
| Msa0220950 | MtrunA17_Chr6g0449171 | 33.333 | 144 | 58 | 1 | 77 | 220 | 2 | 107 | 1.57e-17 | 76.3 |
| Msa0220950 | MtrunA17_Chr5g0444371 | 27.215 | 158 | 75 | 3 | 25 | 163 | 18 | 154 | 1.07e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220950 | AT1G03860.1 | 75.524 | 286 | 50 | 2 | 1 | 266 | 1 | 286 | 9.99e-149 | 417 |
| Msa0220950 | AT1G03860.3 | 75.524 | 286 | 50 | 2 | 1 | 266 | 1 | 286 | 9.99e-149 | 417 |
| Msa0220950 | AT4G28510.1 | 80.000 | 285 | 38 | 1 | 2 | 267 | 3 | 287 | 1.69e-146 | 412 |
| Msa0220950 | AT2G20530.2 | 75.524 | 286 | 50 | 2 | 1 | 267 | 1 | 285 | 3.21e-146 | 411 |
| Msa0220950 | AT2G20530.1 | 75.524 | 286 | 50 | 2 | 1 | 267 | 1 | 285 | 3.21e-146 | 411 |
| Msa0220950 | AT5G44140.1 | 72.662 | 278 | 56 | 2 | 1 | 258 | 1 | 278 | 7.70e-141 | 397 |
| Msa0220950 | AT1G03860.2 | 79.638 | 221 | 26 | 1 | 65 | 266 | 1 | 221 | 1.25e-115 | 331 |
| Msa0220950 | AT3G27280.1 | 47.794 | 272 | 118 | 3 | 15 | 266 | 12 | 279 | 4.82e-79 | 240 |
| Msa0220950 | AT3G27280.2 | 47.794 | 272 | 118 | 3 | 15 | 266 | 12 | 279 | 4.82e-79 | 240 |
| Msa0220950 | AT5G40770.1 | 49.042 | 261 | 113 | 2 | 15 | 255 | 12 | 272 | 1.74e-78 | 239 |
| Msa0220950 | AT5G14300.1 | 46.256 | 227 | 108 | 5 | 33 | 255 | 22 | 238 | 9.44e-61 | 192 |
Find 103 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGACGGCCTTGTTAATT+TGG | 0.098580 | 2_1:-69490372 | Msa0220950:three_prime_UTR |
| CACACTTTACAGGTGAAAAT+TGG | 0.119569 | 2_1:-69491989 | Msa0220950:intron |
| TGCATCAACACTGGCGAAAT+TGG | 0.141061 | 2_1:-69493981 | Msa0220950:CDS |
| AACCGTACGGTTCGGGAATT+GGG | 0.234943 | 2_1:+69494366 | None:intergenic |
| TCAGAAAGAAATGAGGTTAA+AGG | 0.238886 | 2_1:+69494296 | None:intergenic |
| CTGGCGAAATTGGGAATTAT+TGG | 0.260992 | 2_1:-69493971 | Msa0220950:CDS |
| AAACCGTACGGTTCGGGAAT+TGG | 0.269799 | 2_1:+69494365 | None:intergenic |
| TGCAACTTGGATCATTCGTT+TGG | 0.285467 | 2_1:+69490330 | None:intergenic |
| TTGGGAATTATTGGTGGAAT+TGG | 0.287106 | 2_1:-69493962 | Msa0220950:CDS |
| CATGACGGCCTTGTTAATTT+GGG | 0.289043 | 2_1:-69490371 | Msa0220950:three_prime_UTR |
| AAATCCAACGAACTTATTTC+AGG | 0.300261 | 2_1:+69490254 | None:intergenic |
| CAGAAAGAAATGAGGTTAAA+GGG | 0.355445 | 2_1:+69494297 | None:intergenic |
| ACAAGAAAACCGTACGGTTC+GGG | 0.362606 | 2_1:+69494359 | None:intergenic |
| GCAAAAGATCACCTGCTTCC+AGG | 0.365181 | 2_1:+69490555 | None:intergenic |
| GTCCTTACTCGTCCTTTGCC+TGG | 0.375759 | 2_1:-69491959 | Msa0220950:CDS |
| TTCTTGTGCAGCCACCTGCT+TGG | 0.376184 | 2_1:+69491322 | None:intergenic |
| ATCACAAAATGCGTTCCTTC+AGG | 0.381268 | 2_1:+69493746 | None:intergenic |
| CCCTCTCAGTCAGAATCTTC+CGG | 0.382058 | 2_1:+69491426 | None:intergenic |
| CTACCTCCAGTTATTGAATC+TGG | 0.394577 | 2_1:-69490298 | Msa0220950:three_prime_UTR |
| TCAGGCAGCAAAATTAAATC+AGG | 0.394657 | 2_1:+69490272 | None:intergenic |
| AAAGTTTCATGTATGATTGA+AGG | 0.395524 | 2_1:+69491881 | None:intergenic |
| TAAGTTGGCTGGCATTGTAC+TGG | 0.400052 | 2_1:+69491843 | None:intergenic |
| AGGATGCCAGATTCAATAAC+TGG | 0.402800 | 2_1:+69490292 | None:intergenic |
| GCCAGCTACCTACAGTTTAT+CGG | 0.406328 | 2_1:-69491937 | Msa0220950:CDS |
| AACAAGAAAACCGTACGGTT+CGG | 0.419480 | 2_1:+69494358 | None:intergenic |
| CAATGGCTTGTCCGATCAGT+TGG | 0.421036 | 2_1:+69490666 | None:intergenic |
| TGGAGAGAATTATAATGAAC+GGG | 0.425726 | 2_1:-69491909 | Msa0220950:CDS |
| GCAACTTGGATCATTCGTTT+GGG | 0.426029 | 2_1:+69490331 | None:intergenic |
| ACACTTTACAGGTGAAAATT+GGG | 0.431100 | 2_1:-69491988 | Msa0220950:intron |
| GCATCAACACTGGCGAAATT+GGG | 0.431369 | 2_1:-69493980 | Msa0220950:CDS |
| ATGACGGCCTTGTTAATTTG+GGG | 0.466313 | 2_1:-69490370 | Msa0220950:three_prime_UTR |
| TTCCTCAGTGTGATGAAAGC+TGG | 0.472587 | 2_1:+69490635 | None:intergenic |
| TTCATGAATTCTGACCTAGT+TGG | 0.477640 | 2_1:-69490410 | Msa0220950:three_prime_UTR |
| TCAATTACTAGTCTGACCTT+TGG | 0.487774 | 2_1:-69491371 | Msa0220950:CDS |
| TTCAGCAAACAAGGTTTACC+TGG | 0.493035 | 2_1:-69490573 | Msa0220950:CDS |
| TGCTGCAATTGAAGCCAAGC+AGG | 0.493081 | 2_1:-69491336 | Msa0220950:CDS |
| AACAGTCTTTACAATGTTGA+GGG | 0.493383 | 2_1:-69493923 | Msa0220950:CDS |
| GAATCTTCAGCGGATCAACT+TGG | 0.494004 | 2_1:-69490531 | Msa0220950:CDS |
| CTACTTCATCGCAATCTTCG+AGG | 0.494440 | 2_1:-69494267 | Msa0220950:intron |
| CCAAATTAACAAGGCCGTCA+TGG | 0.495219 | 2_1:+69490372 | None:intergenic |
| AAGTGCTGTAATTAGAGCAC+AGG | 0.500292 | 2_1:-69491252 | Msa0220950:intron |
| GCGAAATTGGGAATTATTGG+TGG | 0.507313 | 2_1:-69493968 | Msa0220950:CDS |
| ATCAAGAGCAATGTTGAAGT+TGG | 0.509611 | 2_1:+69491400 | None:intergenic |
| CCTACGAAGATTCAGTCAAA+AGG | 0.509827 | 2_1:-69494416 | None:intergenic |
| TCCCCAATTCCCGAACCGTA+CGG | 0.511134 | 2_1:-69494368 | Msa0220950:five_prime_UTR |
| TGTGATGAAAGCTGGATTGT+TGG | 0.511259 | 2_1:+69490643 | None:intergenic |
| GCTGCCTGAAATAAGTTCGT+TGG | 0.513237 | 2_1:-69490258 | Msa0220950:three_prime_UTR |
| GTTGATGCAGCGCCACCACT+TGG | 0.517803 | 2_1:+69493995 | None:intergenic |
| CCTACAGTTTATCGGACCCT+TGG | 0.517966 | 2_1:-69491929 | Msa0220950:CDS |
| AGGCTGTTAGTCGTGAAATC+CGG | 0.519390 | 2_1:-69491445 | Msa0220950:CDS |
| AATGGCTTGTCCGATCAGTT+GGG | 0.519729 | 2_1:+69490667 | None:intergenic |
| TAACAGTCTTTACAATGTTG+AGG | 0.522899 | 2_1:-69493924 | Msa0220950:CDS |
| GTTCATTATAATTCTCTCCA+AGG | 0.524825 | 2_1:+69491912 | None:intergenic |
| GGCCAGGCAAAGGACGAGTA+AGG | 0.525565 | 2_1:+69491957 | None:intergenic |
| ATCGTGTTTAACCGTCTCGT+TGG | 0.527718 | 2_1:-69493887 | Msa0220950:CDS |
| GTTGTGTAGGTTTATCCTGA+AGG | 0.531470 | 2_1:-69493761 | Msa0220950:intron |
| TGACGGCCTTGTTAATTTGG+GGG | 0.535142 | 2_1:-69490369 | Msa0220950:three_prime_UTR |
| TATTGCAAATTCAGCAAACA+AGG | 0.537639 | 2_1:-69490582 | Msa0220950:CDS |
| AACAAGGTTTACCTGGAAGC+AGG | 0.540987 | 2_1:-69490566 | Msa0220950:CDS |
| CCTCCCGCTGTGTAATAAGT+TGG | 0.543103 | 2_1:+69491828 | None:intergenic |
| TCCGATAAACTGTAGGTAGC+TGG | 0.544929 | 2_1:+69491936 | None:intergenic |
| TTGTGATTCCGTGGTTTGAG+AGG | 0.547203 | 2_1:-69493730 | Msa0220950:CDS |
| TTGGAGAGAATTATAATGAA+CGG | 0.549347 | 2_1:-69491910 | Msa0220950:CDS |
| CCGCTGTGTAATAAGTTGGC+TGG | 0.549719 | 2_1:+69491832 | None:intergenic |
| GTAGGTAGCTGGCCAGGCAA+AGG | 0.551902 | 2_1:+69491947 | None:intergenic |
| ATCACCGGCCTCTCAAACCA+CGG | 0.552231 | 2_1:+69493722 | None:intergenic |
| AAGTTGGCTGGCATTGTACT+GGG | 0.555741 | 2_1:+69491844 | None:intergenic |
| TTCATTATAATTCTCTCCAA+GGG | 0.556280 | 2_1:+69491913 | None:intergenic |
| TACTAGTCTGACCTTTGGCA+AGG | 0.569845 | 2_1:-69491366 | Msa0220950:CDS |
| GATTCCGTGGTTTGAGAGGC+CGG | 0.570682 | 2_1:-69493726 | Msa0220950:CDS |
| CAGCCAACTTATTACACAGC+GGG | 0.571868 | 2_1:-69491831 | Msa0220950:CDS |
| GGCTGCACAAGAAGCTGAGA+GGG | 0.572538 | 2_1:-69491312 | Msa0220950:CDS |
| TGGTGGCGCTGCATCAACAC+TGG | 0.572841 | 2_1:-69493990 | Msa0220950:CDS |
| GCTAAAAGTGCCCAACTGAT+CGG | 0.574265 | 2_1:-69490677 | Msa0220950:CDS |
| TAAACTGTAGGTAGCTGGCC+AGG | 0.578326 | 2_1:+69491941 | None:intergenic |
| GTTGTCTGTTCATTCCAACT+AGG | 0.578695 | 2_1:+69490396 | None:intergenic |
| TGAGAGGGCTAAATTTGTTG+TGG | 0.593905 | 2_1:-69491297 | Msa0220950:CDS |
| ACCGTACGGTTCGGGAATTG+GGG | 0.596022 | 2_1:+69494367 | None:intergenic |
| CCAAGGGTCCGATAAACTGT+AGG | 0.602094 | 2_1:+69491929 | None:intergenic |
| AACGCGAAAGTTCCAAGTGG+TGG | 0.602185 | 2_1:-69494007 | Msa0220950:CDS |
| TTCTGAACAAGAAAACCGTA+CGG | 0.603333 | 2_1:+69494353 | None:intergenic |
| GAGGAAGATAGAAGCCGCGA+GGG | 0.603991 | 2_1:-69490618 | Msa0220950:CDS |
| CCGGAAGATTCTGACTGAGA+GGG | 0.615174 | 2_1:-69491426 | Msa0220950:CDS |
| TCCGGAAGATTCTGACTGAG+AGG | 0.615920 | 2_1:-69491427 | Msa0220950:CDS |
| GTGTTTCTCAGAAAGAAATG+AGG | 0.617716 | 2_1:+69494289 | None:intergenic |
| TGTCTTTGACACCAACGAGA+CGG | 0.624230 | 2_1:+69493876 | None:intergenic |
| TGCAATTGAAGCCAAGCAGG+TGG | 0.632190 | 2_1:-69491333 | Msa0220950:CDS |
| GAAAGCTGGATTGTTGGCAA+TGG | 0.633552 | 2_1:+69490649 | None:intergenic |
| ACATGAAACTTTGAAAGCTG+TGG | 0.633777 | 2_1:-69491870 | Msa0220950:CDS |
| TGGCTGCACAAGAAGCTGAG+AGG | 0.639141 | 2_1:-69491313 | Msa0220950:CDS |
| GCACGAACATCATAGATCAC+CGG | 0.645792 | 2_1:+69493707 | None:intergenic |
| GACGGTTAAACACGATAGCA+CGG | 0.646783 | 2_1:+69493894 | None:intergenic |
| AGCAGTAAACTCCTTGCCAA+AGG | 0.656274 | 2_1:+69491355 | None:intergenic |
| AGTCTTTACAATGTTGAGGG+AGG | 0.662722 | 2_1:-69493920 | Msa0220950:CDS |
| ATGAACAGACAACTCCATGA+CGG | 0.673190 | 2_1:-69490386 | Msa0220950:three_prime_UTR |
| TCTCGTTGGTGTCAAAGACA+AGG | 0.674892 | 2_1:-69493873 | Msa0220950:intron |
| CCAACTTATTACACAGCGGG+AGG | 0.682391 | 2_1:-69491828 | Msa0220950:intron |
| ATGCCAGATTCAATAACTGG+AGG | 0.687656 | 2_1:+69490295 | None:intergenic |
| TGAGGAAGATAGAAGCCGCG+AGG | 0.696862 | 2_1:-69490619 | Msa0220950:CDS |
| AACATGTGCTATCTCCCTCG+CGG | 0.711001 | 2_1:+69490604 | None:intergenic |
| AAGAACGCGAAAGTTCCAAG+TGG | 0.742151 | 2_1:-69494010 | Msa0220950:CDS |
| ATCCAGCTTTCATCACACTG+AGG | 0.780168 | 2_1:-69490637 | Msa0220950:CDS |
| CCAGCCAACTTATTACACAG+CGG | 0.790079 | 2_1:-69491832 | Msa0220950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACATTTCTAAATTTAAA+GGG | + | chr2_1:69491686-69491705 | None:intergenic | 10.0% |
| !! | ATAAACATTTCTAAATTTAA+AGG | + | chr2_1:69491687-69491706 | None:intergenic | 10.0% |
| !!! | AGTTTTAATTAATAATTCAT+AGG | - | chr2_1:69492434-69492453 | Msa0220950:intron | 10.0% |
| !!! | AAAATGAAAATTGATTTCTA+AGG | + | chr2_1:69490370-69490389 | None:intergenic | 15.0% |
| !!! | TTTATTTTATCTTTAGCTAT+AGG | + | chr2_1:69491022-69491041 | None:intergenic | 15.0% |
| !! | ATATAAGCTATTTATAAAAC+TGG | + | chr2_1:69491611-69491630 | None:intergenic | 15.0% |
| !! | GAATATGATATATCAAAAAT+GGG | + | chr2_1:69491797-69491816 | None:intergenic | 15.0% |
| !! | TGAATATGATATATCAAAAA+TGG | + | chr2_1:69491798-69491817 | None:intergenic | 15.0% |
| !! | TTTGATATATCATATTCAAA+TGG | - | chr2_1:69491800-69491819 | Msa0220950:intron | 15.0% |
| !! | GTTAAATGTTTCTTATAAAT+AGG | + | chr2_1:69491983-69492002 | None:intergenic | 15.0% |
| !!! | ATTATGTCTTCTAATATTTT+TGG | - | chr2_1:69492397-69492416 | Msa0220950:intron | 15.0% |
| !!! | TATGAAGATTTTTATGAGTA+GGG | + | chr2_1:69490242-69490261 | None:intergenic | 20.0% |
| !!! | TTATGAAGATTTTTATGAGT+AGG | + | chr2_1:69490243-69490262 | None:intergenic | 20.0% |
| !!! | TTCATTTTCGTTTTTGTTTA+GGG | - | chr2_1:69490422-69490441 | Msa0220950:three_prime_UTR | 20.0% |
| !!! | TTTTGTGAATTGAAATGATA+TGG | - | chr2_1:69490766-69490785 | Msa0220950:intron | 20.0% |
| !! | TTTGTGAATTGAAATGATAT+GGG | - | chr2_1:69490767-69490786 | Msa0220950:intron | 20.0% |
| !! | AAACATAATGAAACATATAG+AGG | + | chr2_1:69491423-69491442 | None:intergenic | 20.0% |
| !! | ATTCATGAAAATTATATCAC+TGG | + | chr2_1:69491448-69491467 | None:intergenic | 20.0% |
| !!! | AACTGTATTCAGATTTTAAA+AGG | - | chr2_1:69491483-69491502 | Msa0220950:intron | 20.0% |
| !!! | CGTTTTTACAAAGTTTATAT+TGG | - | chr2_1:69491558-69491577 | Msa0220950:intron | 20.0% |
| !! | GAGAAAAATCTAAATACTAA+CGG | + | chr2_1:69491876-69491895 | None:intergenic | 20.0% |
| !! | ATGTTTCTTATAAATAGGAA+AGG | + | chr2_1:69491978-69491997 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAAAT+AGG | - | chr2_1:69492082-69492101 | Msa0220950:intron | 20.0% |
| !!! | TGATTTGAAATAGTTCTTAA+GGG | + | chr2_1:69492164-69492183 | None:intergenic | 20.0% |
| !! | AAATAATCTAACATAATGAC+AGG | + | chr2_1:69492844-69492863 | None:intergenic | 20.0% |
| !! | ATTTACACATAATACTTTCA+AGG | + | chr2_1:69492918-69492937 | None:intergenic | 20.0% |
| !! | ACATCCTACAATTTATTTAT+TGG | - | chr2_1:69492981-69493000 | Msa0220950:intron | 20.0% |
| !! | CAAACCAATAAATAAATTGT+AGG | + | chr2_1:69492988-69493007 | None:intergenic | 20.0% |
| !! | TTAATAGATCTATTCTTTGT+AGG | - | chr2_1:69493096-69493115 | Msa0220950:intron | 20.0% |
| !!! | ATTTTCATGTAGAATACATT+CGG | - | chr2_1:69493401-69493420 | Msa0220950:intron | 20.0% |
| !!! | TGGATTTTTATATTTTTCTC+AGG | - | chr2_1:69494323-69494342 | Msa0220950:five_prime_UTR | 20.0% |
| !!! | GGATTTTTATATTTTTCTCA+GGG | - | chr2_1:69494324-69494343 | Msa0220950:five_prime_UTR | 20.0% |
| !!! | TGCTAAAAGTTTTTGTTTAT+CGG | - | chr2_1:69494382-69494401 | Msa0220950:five_prime_UTR | 20.0% |
| ! | ATTGAAGAAAGAGAATATTG+AGG | + | chr2_1:69490341-69490360 | None:intergenic | 25.0% |
| !! | ATGAAAATTGATTTCTAAGG+TGG | + | chr2_1:69490367-69490386 | None:intergenic | 25.0% |
| !!! | GTTCATTTTCGTTTTTGTTT+AGG | - | chr2_1:69490421-69490440 | Msa0220950:three_prime_UTR | 25.0% |
| ! | CTTATGTATAAGTTTGCATA+AGG | - | chr2_1:69490992-69491011 | Msa0220950:intron | 25.0% |
| !! | TTATTTTCATAAGTTCTCCA+AGG | + | chr2_1:69491089-69491108 | None:intergenic | 25.0% |
| ! | TGAAAAAAGCTTATGCAAAA+TGG | - | chr2_1:69491111-69491130 | Msa0220950:intron | 25.0% |
| ! | TCTAAATAAAACTGGATTTC+AGG | + | chr2_1:69491225-69491244 | None:intergenic | 25.0% |
| !! | ATACATAATGATTTTCAGAC+AGG | + | chr2_1:69491336-69491355 | None:intergenic | 25.0% |
| ! | TATCATATTCAAATGGTGTA+AGG | - | chr2_1:69491807-69491826 | Msa0220950:intron | 25.0% |
| ! | TTCTTATAAATAGGAAAGGA+GGG | + | chr2_1:69491974-69491993 | None:intergenic | 25.0% |
| ! | TTTCTTATAAATAGGAAAGG+AGG | + | chr2_1:69491975-69491994 | None:intergenic | 25.0% |
| ! | CATTGCATAAATGATGTATT+TGG | - | chr2_1:69492013-69492032 | Msa0220950:intron | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | - | chr2_1:69492087-69492106 | Msa0220950:intron | 25.0% |
| !! | GATTTGAAATAGTTCTTAAG+GGG | + | chr2_1:69492163-69492182 | None:intergenic | 25.0% |
| !! | CTGATTTGAAATAGTTCTTA+AGG | + | chr2_1:69492165-69492184 | None:intergenic | 25.0% |
| ! | AATCTATAAACTTGAAGTAC+TGG | + | chr2_1:69492493-69492512 | None:intergenic | 25.0% |
| ! | TTCATTATAATTCTCTCCAA+GGG | + | chr2_1:69492651-69492670 | None:intergenic | 25.0% |
| ! | TTGGAGAGAATTATAATGAA+CGG | - | chr2_1:69492651-69492670 | Msa0220950:intron | 25.0% |
| ! | AAAGTTTCATGTATGATTGA+AGG | + | chr2_1:69492683-69492702 | None:intergenic | 25.0% |
| ! | TTCATAAAACATATGCTACT+GGG | + | chr2_1:69492952-69492971 | None:intergenic | 25.0% |
| ! | TTTCATAAAACATATGCTAC+TGG | + | chr2_1:69492953-69492972 | None:intergenic | 25.0% |
| !! | TGGTTTGAATTCATTTTAAG+TGG | - | chr2_1:69493001-69493020 | Msa0220950:intron | 25.0% |
| !!! | GGTTTGAATTCATTTTAAGT+GGG | - | chr2_1:69493002-69493021 | Msa0220950:intron | 25.0% |
| !!! | TCTTTTGATTCCTTAAACAA+TGG | + | chr2_1:69493605-69493624 | None:intergenic | 25.0% |
| ! | TTTCTTAAACAATGACCTTA+GGG | - | chr2_1:69493703-69493722 | Msa0220950:intron | 25.0% |
| ! | TATTGATCAACATTGAATGT+TGG | - | chr2_1:69493797-69493816 | Msa0220950:intron | 25.0% |
| ! | AAGCTAGTGAGGATTTTATT+GGG | + | chr2_1:69490171-69490190 | None:intergenic | 30.0% |
| ! | AAAGCTAGTGAGGATTTTAT+TGG | + | chr2_1:69490172-69490191 | None:intergenic | 30.0% |
| CAGAAAGAAATGAGGTTAAA+GGG | + | chr2_1:69490267-69490286 | None:intergenic | 30.0% | |
| TCAGAAAGAAATGAGGTTAA+AGG | + | chr2_1:69490268-69490287 | None:intergenic | 30.0% | |
| GAAAGAGAATATTGAGGAAA+TGG | + | chr2_1:69490335-69490354 | None:intergenic | 30.0% | |
| TAACAGTCTTTACAATGTTG+AGG | - | chr2_1:69490637-69490656 | Msa0220950:CDS | 30.0% | |
| AACAGTCTTTACAATGTTGA+GGG | - | chr2_1:69490638-69490657 | Msa0220950:CDS | 30.0% | |
| !! | AAAGACAAGGTCATTTTCTA+GGG | - | chr2_1:69490701-69490720 | Msa0220950:intron | 30.0% |
| CTTGATTTCGTTGAATTCAT+CGG | - | chr2_1:69490743-69490762 | Msa0220950:intron | 30.0% | |
| ATAAGTTGTTCATCCAAACA+GGG | + | chr2_1:69490935-69490954 | None:intergenic | 30.0% | |
| AATAAGTTGTTCATCCAAAC+AGG | + | chr2_1:69490936-69490955 | None:intergenic | 30.0% | |
| CATGCAAGTCTAAATAAAAC+TGG | + | chr2_1:69491233-69491252 | None:intergenic | 30.0% | |
| ATACCATCACAAAGAATAGA+GGG | + | chr2_1:69491312-69491331 | None:intergenic | 30.0% | |
| TATACCATCACAAAGAATAG+AGG | + | chr2_1:69491313-69491332 | None:intergenic | 30.0% | |
| AGTATGAATGATGCACATAA+CGG | + | chr2_1:69491363-69491382 | None:intergenic | 30.0% | |
| ACATTACTTTGTTAACTAGG+GGG | + | chr2_1:69491393-69491412 | None:intergenic | 30.0% | |
| GACATTACTTTGTTAACTAG+GGG | + | chr2_1:69491394-69491413 | None:intergenic | 30.0% | |
| GGACATTACTTTGTTAACTA+GGG | + | chr2_1:69491395-69491414 | None:intergenic | 30.0% | |
| AGGACATTACTTTGTTAACT+AGG | + | chr2_1:69491396-69491415 | None:intergenic | 30.0% | |
| ATGAAACATATAGAGGATTG+AGG | + | chr2_1:69491416-69491435 | None:intergenic | 30.0% | |
| !!! | TTCCACATGAATTTGTTTTG+AGG | - | chr2_1:69491517-69491536 | Msa0220950:intron | 30.0% |
| ATTGGAGTTTACCTTTGTTA+AGG | - | chr2_1:69491576-69491595 | Msa0220950:intron | 30.0% | |
| AGCTATTTATAAAACTGGAG+AGG | + | chr2_1:69491606-69491625 | None:intergenic | 30.0% | |
| ! | TCAACAATGATTTTGCAATC+AGG | + | chr2_1:69491726-69491745 | None:intergenic | 30.0% |
| CATTGAGTAACTAATGTACT+TGG | + | chr2_1:69492052-69492071 | None:intergenic | 30.0% | |
| TTCAGAGGCTAAACATAAAA+GGG | + | chr2_1:69492305-69492324 | None:intergenic | 30.0% | |
| ATTCAGAGGCTAAACATAAA+AGG | + | chr2_1:69492306-69492325 | None:intergenic | 30.0% | |
| !! | AAACTTGAAGTACTGGAAAT+TGG | + | chr2_1:69492486-69492505 | None:intergenic | 30.0% |
| ACACTTTACAGGTGAAAATT+GGG | - | chr2_1:69492573-69492592 | Msa0220950:intron | 30.0% | |
| GTTCATTATAATTCTCTCCA+AGG | + | chr2_1:69492652-69492671 | None:intergenic | 30.0% | |
| TGGAGAGAATTATAATGAAC+GGG | - | chr2_1:69492652-69492671 | Msa0220950:intron | 30.0% | |
| !! | ATTTTTCAAACCATGTTGCT+TGG | - | chr2_1:69492796-69492815 | Msa0220950:intron | 30.0% |
| !! | TTTTTCAAACCATGTTGCTT+GGG | - | chr2_1:69492797-69492816 | Msa0220950:intron | 30.0% |
| AGTAACTGCATAAGAATTCA+CGG | + | chr2_1:69493345-69493364 | None:intergenic | 30.0% | |
| AAACAACAAAAACATGTACC+AGG | + | chr2_1:69493377-69493396 | None:intergenic | 30.0% | |
| AAATCTGGTTGTGTTTAATG+TGG | - | chr2_1:69493542-69493561 | Msa0220950:intron | 30.0% | |
| AATCTGGTTGTGTTTAATGT+GGG | - | chr2_1:69493543-69493562 | Msa0220950:intron | 30.0% | |
| GTCATTGTTTAAGAAACTCA+AGG | + | chr2_1:69493699-69493718 | None:intergenic | 30.0% | |
| GTTTCTTAAACAATGACCTT+AGG | - | chr2_1:69493702-69493721 | Msa0220950:intron | 30.0% | |
| AATTGACTGAGATGTAAAAC+TGG | + | chr2_1:69493778-69493797 | None:intergenic | 30.0% | |
| TTGATGTGTAAAAAAGGTCA+GGG | + | chr2_1:69493855-69493874 | None:intergenic | 30.0% | |
| !!! | ACCTTTTTTACACATCAACA+GGG | - | chr2_1:69493857-69493876 | Msa0220950:intron | 30.0% |
| TATTGCAAATTCAGCAAACA+AGG | - | chr2_1:69493979-69493998 | Msa0220950:CDS | 30.0% | |
| ! | GTAGTTCATTTTATGCAACT+TGG | + | chr2_1:69494247-69494266 | None:intergenic | 30.0% |
| AAATCCAACGAACTTATTTC+AGG | + | chr2_1:69494310-69494329 | None:intergenic | 30.0% | |
| TTCTGAACAAGAAAACCGTA+CGG | + | chr2_1:69490211-69490230 | None:intergenic | 35.0% | |
| GTGTTTCTCAGAAAGAAATG+AGG | + | chr2_1:69490275-69490294 | None:intergenic | 35.0% | |
| AGAATATTGAGGAAATGGAG+AGG | + | chr2_1:69490330-69490349 | None:intergenic | 35.0% | |
| TTGGGAATTATTGGTGGAAT+TGG | - | chr2_1:69490599-69490618 | Msa0220950:CDS | 35.0% | |
| !! | CAAAGACAAGGTCATTTTCT+AGG | - | chr2_1:69490700-69490719 | Msa0220950:intron | 35.0% |
| !!! | AAGGTCATTTTCTAGGGTTT+AGG | - | chr2_1:69490707-69490726 | Msa0220950:intron | 35.0% |
| !! | ATTTGGTTGAGAGTACTTCT+GGG | - | chr2_1:69490885-69490904 | Msa0220950:intron | 35.0% |
| TTGAGCTAATCTCTTGACAT+AGG | + | chr2_1:69491179-69491198 | None:intergenic | 35.0% | |
| TAGACTTGCATGTCATCATT+AGG | - | chr2_1:69491241-69491260 | Msa0220950:intron | 35.0% | |
| TTTCCCTCTATTCTTTGTGA+TGG | - | chr2_1:69491306-69491325 | Msa0220950:CDS | 35.0% | |
| GTTATGTGCATCATTCATAC+TGG | - | chr2_1:69491362-69491381 | Msa0220950:CDS | 35.0% | |
| CATTACTTTGTTAACTAGGG+GGG | + | chr2_1:69491392-69491411 | None:intergenic | 35.0% | |
| CTCCTCAAAACAAATTCATG+TGG | + | chr2_1:69491522-69491541 | None:intergenic | 35.0% | |
| ! | GAAGTATTTGAACAACTGCT+AGG | - | chr2_1:69491744-69491763 | Msa0220950:intron | 35.0% |
| ACATTTCAATCTTGTGATCC+TGG | - | chr2_1:69491907-69491926 | Msa0220950:CDS | 35.0% | |
| TATAGTTAAGTCCAAATGCC+AGG | + | chr2_1:69491928-69491947 | None:intergenic | 35.0% | |
| AGGGAGTAGACAATAATCAT+CGG | + | chr2_1:69491955-69491974 | None:intergenic | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr2_1:69492090-69492109 | Msa0220950:intron | 35.0% | |
| TTCTTATAAATAGGACCGGA+GGG | - | chr2_1:69492091-69492110 | Msa0220950:intron | 35.0% | |
| CAACAATTAAATACTCCCTC+CGG | + | chr2_1:69492109-69492128 | None:intergenic | 35.0% | |
| GTCTGTGTGGTGATTTAAAA+TGG | - | chr2_1:69492218-69492237 | Msa0220950:intron | 35.0% | |
| ! | TTTTGATGCCGTTAAACATC+TGG | - | chr2_1:69492255-69492274 | Msa0220950:intron | 35.0% |
| AAAGGGAAATTCAGACTACA+AGG | + | chr2_1:69492288-69492307 | None:intergenic | 35.0% | |
| AGAGTATGATGCAAATTCAG+AGG | + | chr2_1:69492320-69492339 | None:intergenic | 35.0% | |
| TCATAGGTAGCAAAGATGTT+TGG | - | chr2_1:69492450-69492469 | Msa0220950:intron | 35.0% | |
| CACACTTTACAGGTGAAAAT+TGG | - | chr2_1:69492572-69492591 | Msa0220950:intron | 35.0% | |
| ! | ACATGAAACTTTGAAAGCTG+TGG | - | chr2_1:69492691-69492710 | Msa0220950:intron | 35.0% |
| ATCAAGAGCAATGTTGAAGT+TGG | + | chr2_1:69493164-69493183 | None:intergenic | 35.0% | |
| ! | TCAATTACTAGTCTGACCTT+TGG | - | chr2_1:69493190-69493209 | Msa0220950:intron | 35.0% |
| !!! | ATAAGACAGTGCTAGTTTTG+GGG | + | chr2_1:69493455-69493474 | None:intergenic | 35.0% |
| !!! | GATAAGACAGTGCTAGTTTT+GGG | + | chr2_1:69493456-69493475 | None:intergenic | 35.0% |
| !! | AGATAAGACAGTGCTAGTTT+TGG | + | chr2_1:69493457-69493476 | None:intergenic | 35.0% |
| TGTTCTCTTGATCATGATGT+TGG | - | chr2_1:69493480-69493499 | Msa0220950:intron | 35.0% | |
| CATGATGTTGGATACATCTT+TGG | - | chr2_1:69493492-69493511 | Msa0220950:intron | 35.0% | |
| ACTGTCTTTGTTCACAAATC+TGG | - | chr2_1:69493527-69493546 | Msa0220950:intron | 35.0% | |
| AAATACTAACAAGTGCCCTT+AGG | - | chr2_1:69493579-69493598 | Msa0220950:intron | 35.0% | |
| TTCCTTAAACAATGGCCTAA+GGG | + | chr2_1:69493597-69493616 | None:intergenic | 35.0% | |
| ATTCCTTAAACAATGGCCTA+AGG | + | chr2_1:69493598-69493617 | None:intergenic | 35.0% | |
| AACTCAAGGAAACTTTGTCT+AGG | + | chr2_1:69493685-69493704 | None:intergenic | 35.0% | |
| TGATGTGTAAAAAAGGTCAG+GGG | + | chr2_1:69493854-69493873 | None:intergenic | 35.0% | |
| GTTGATGTGTAAAAAAGGTC+AGG | + | chr2_1:69493856-69493875 | None:intergenic | 35.0% | |
| !!! | GACCTTTTTTACACATCAAC+AGG | - | chr2_1:69493856-69493875 | Msa0220950:intron | 35.0% |
| ACCCTGTTGATGTGTAAAAA+AGG | + | chr2_1:69493861-69493880 | None:intergenic | 35.0% | |
| ! | ATCTTTTGCTGAATCTTCAG+CGG | - | chr2_1:69494020-69494039 | Msa0220950:CDS | 35.0% |
| !!! | TAACCAGCTCATTTTTTGCT+AGG | + | chr2_1:69494058-69494077 | None:intergenic | 35.0% |
| TTCATGAATTCTGACCTAGT+TGG | - | chr2_1:69494151-69494170 | Msa0220950:intron | 35.0% | |
| TCAGGCAGCAAAATTAAATC+AGG | + | chr2_1:69494292-69494311 | None:intergenic | 35.0% | |
| AATTGGGGAAAAAGCTAGTG+AGG | + | chr2_1:69490182-69490201 | None:intergenic | 40.0% | |
| AACAAGAAAACCGTACGGTT+CGG | + | chr2_1:69490206-69490225 | None:intergenic | 40.0% | |
| CTGGCGAAATTGGGAATTAT+TGG | - | chr2_1:69490590-69490609 | Msa0220950:CDS | 40.0% | |
| GCGAAATTGGGAATTATTGG+TGG | - | chr2_1:69490593-69490612 | Msa0220950:CDS | 40.0% | |
| AGTCTTTACAATGTTGAGGG+AGG | - | chr2_1:69490641-69490660 | Msa0220950:CDS | 40.0% | |
| GTTGTGTAGGTTTATCCTGA+AGG | - | chr2_1:69490800-69490819 | Msa0220950:intron | 40.0% | |
| ATCACAAAATGCGTTCCTTC+AGG | + | chr2_1:69490818-69490837 | None:intergenic | 40.0% | |
| ! | GAAGTACTCTCAACCAAATG+AGG | + | chr2_1:69490884-69490903 | None:intergenic | 40.0% |
| !! | CATTTGGTTGAGAGTACTTC+TGG | - | chr2_1:69490884-69490903 | Msa0220950:intron | 40.0% |
| !! | GCTGTTTTCATAAGCTACCT+TGG | - | chr2_1:69491069-69491088 | Msa0220950:intron | 40.0% |
| ! | CTCTTGACATAGGTATTGTG+AGG | + | chr2_1:69491169-69491188 | None:intergenic | 40.0% |
| GATTTCAGGCATGTTTGGAT+TGG | + | chr2_1:69491211-69491230 | None:intergenic | 40.0% | |
| AACTGGATTTCAGGCATGTT+TGG | + | chr2_1:69491216-69491235 | None:intergenic | 40.0% | |
| GTATTTGAACAACTGCTAGG+TGG | - | chr2_1:69491747-69491766 | Msa0220950:intron | 40.0% | |
| AATCTTGTGATCCTGGCATT+TGG | - | chr2_1:69491914-69491933 | Msa0220950:CDS | 40.0% | |
| GATCATTTCTGTTGTCTGTG+TGG | - | chr2_1:69492205-69492224 | Msa0220950:intron | 40.0% | |
| GCCAATCACCAGATGTTTAA+CGG | + | chr2_1:69492266-69492285 | None:intergenic | 40.0% | |
| TCAAACAACCCTGTGAAAGT+GGG | + | chr2_1:69492371-69492390 | None:intergenic | 40.0% | |
| ATCAAACAACCCTGTGAAAG+TGG | + | chr2_1:69492372-69492391 | None:intergenic | 40.0% | |
| ACCTGTAAAGTGTGTACATG+CGG | + | chr2_1:69492566-69492585 | None:intergenic | 40.0% | |
| !! | TGAGAGGGCTAAATTTGTTG+TGG | - | chr2_1:69493264-69493283 | Msa0220950:intron | 40.0% |
| ! | AAGTGCTGTAATTAGAGCAC+AGG | - | chr2_1:69493309-69493328 | Msa0220950:intron | 40.0% |
| TTCTTATGCAGTTACTGCTG+TGG | - | chr2_1:69493349-69493368 | Msa0220950:intron | 40.0% | |
| ATGTGTAAAAAAGGTCAGGG+GGG | + | chr2_1:69493852-69493871 | None:intergenic | 40.0% | |
| GATGTGTAAAAAAGGTCAGG+GGG | + | chr2_1:69493853-69493872 | None:intergenic | 40.0% | |
| ! | TTTTACACATCAACAGGGTG+AGG | - | chr2_1:69493862-69493881 | Msa0220950:intron | 40.0% |
| TGTGATGAAAGCTGGATTGT+TGG | + | chr2_1:69493921-69493940 | None:intergenic | 40.0% | |
| TTCAGCAAACAAGGTTTACC+TGG | - | chr2_1:69493988-69494007 | Msa0220950:CDS | 40.0% | |
| GATCCTAGCAAAAAATGAGC+TGG | - | chr2_1:69494052-69494071 | Msa0220950:intron | 40.0% | |
| GTTGTCTGTTCATTCCAACT+AGG | + | chr2_1:69494168-69494187 | None:intergenic | 40.0% | |
| ATGAACAGACAACTCCATGA+CGG | - | chr2_1:69494175-69494194 | Msa0220950:intron | 40.0% | |
| !! | CATGACGGCCTTGTTAATTT+GGG | - | chr2_1:69494190-69494209 | Msa0220950:intron | 40.0% |
| !! | ATGACGGCCTTGTTAATTTG+GGG | - | chr2_1:69494191-69494210 | Msa0220950:intron | 40.0% |
| GCAACTTGGATCATTCGTTT+GGG | + | chr2_1:69494233-69494252 | None:intergenic | 40.0% | |
| TGCAACTTGGATCATTCGTT+TGG | + | chr2_1:69494234-69494253 | None:intergenic | 40.0% | |
| CTACCTCCAGTTATTGAATC+TGG | - | chr2_1:69494263-69494282 | Msa0220950:intron | 40.0% | |
| ATGCCAGATTCAATAACTGG+AGG | + | chr2_1:69494269-69494288 | None:intergenic | 40.0% | |
| AGGATGCCAGATTCAATAAC+TGG | + | chr2_1:69494272-69494291 | None:intergenic | 40.0% | |
| ACAAGAAAACCGTACGGTTC+GGG | + | chr2_1:69490205-69490224 | None:intergenic | 45.0% | |
| CTACTTCATCGCAATCTTCG+AGG | - | chr2_1:69490294-69490313 | Msa0220950:three_prime_UTR | 45.0% | |
| AAGAACGCGAAAGTTCCAAG+TGG | - | chr2_1:69490551-69490570 | Msa0220950:CDS | 45.0% | |
| TGCATCAACACTGGCGAAAT+TGG | - | chr2_1:69490580-69490599 | Msa0220950:CDS | 45.0% | |
| GCATCAACACTGGCGAAATT+GGG | - | chr2_1:69490581-69490600 | Msa0220950:CDS | 45.0% | |
| GACGGTTAAACACGATAGCA+CGG | + | chr2_1:69490670-69490689 | None:intergenic | 45.0% | |
| ATCGTGTTTAACCGTCTCGT+TGG | - | chr2_1:69490674-69490693 | Msa0220950:CDS | 45.0% | |
| TGTCTTTGACACCAACGAGA+CGG | + | chr2_1:69490688-69490707 | None:intergenic | 45.0% | |
| !! | TCTCGTTGGTGTCAAAGACA+AGG | - | chr2_1:69490688-69490707 | Msa0220950:intron | 45.0% |
| ! | GAACGCATTTTGTGATTCCG+TGG | - | chr2_1:69490822-69490841 | Msa0220950:intron | 45.0% |
| TTGTGATTCCGTGGTTTGAG+AGG | - | chr2_1:69490831-69490850 | Msa0220950:intron | 45.0% | |
| GCACGAACATCATAGATCAC+CGG | + | chr2_1:69490857-69490876 | None:intergenic | 45.0% | |
| TACTTTGTTAACTAGGGGGG+TGG | + | chr2_1:69491389-69491408 | None:intergenic | 45.0% | |
| GGAGAGGCAATCCTTAACAA+AGG | + | chr2_1:69491590-69491609 | None:intergenic | 45.0% | |
| GCCGTTAAACATCTGGTGAT+TGG | - | chr2_1:69492262-69492281 | Msa0220950:intron | 45.0% | |
| TCCTTTCTCCCACTTTCACA+GGG | - | chr2_1:69492360-69492379 | Msa0220950:intron | 45.0% | |
| ACCGCATGTACACACTTTAC+AGG | - | chr2_1:69492562-69492581 | Msa0220950:intron | 45.0% | |
| GCCAGCTACCTACAGTTTAT+CGG | - | chr2_1:69492624-69492643 | Msa0220950:intron | 45.0% | |
| TCCGATAAACTGTAGGTAGC+TGG | + | chr2_1:69492628-69492647 | None:intergenic | 45.0% | |
| AAGTTGGCTGGCATTGTACT+GGG | + | chr2_1:69492720-69492739 | None:intergenic | 45.0% | |
| ! | TAAGTTGGCTGGCATTGTAC+TGG | + | chr2_1:69492721-69492740 | None:intergenic | 45.0% |
| CCAGCCAACTTATTACACAG+CGG | - | chr2_1:69492729-69492748 | Msa0220950:intron | 45.0% | |
| CAGCCAACTTATTACACAGC+GGG | - | chr2_1:69492730-69492749 | Msa0220950:intron | 45.0% | |
| AGGCTGTTAGTCGTGAAATC+CGG | - | chr2_1:69493116-69493135 | Msa0220950:intron | 45.0% | |
| ! | TACTAGTCTGACCTTTGGCA+AGG | - | chr2_1:69493195-69493214 | Msa0220950:intron | 45.0% |
| AGCAGTAAACTCCTTGCCAA+AGG | + | chr2_1:69493209-69493228 | None:intergenic | 45.0% | |
| TGCCCTTAGGCCATTGTTTA+AGG | - | chr2_1:69493592-69493611 | Msa0220950:intron | 45.0% | |
| AACACGTCATGCTAACCCTA+AGG | + | chr2_1:69493721-69493740 | None:intergenic | 45.0% | |
| !! | GCTAAAAGTGCCCAACTGAT+CGG | - | chr2_1:69493884-69493903 | Msa0220950:CDS | 45.0% |
| ! | AATGGCTTGTCCGATCAGTT+GGG | + | chr2_1:69493897-69493916 | None:intergenic | 45.0% |
| GAAAGCTGGATTGTTGGCAA+TGG | + | chr2_1:69493915-69493934 | None:intergenic | 45.0% | |
| ATCCAGCTTTCATCACACTG+AGG | - | chr2_1:69493924-69493943 | Msa0220950:CDS | 45.0% | |
| TTCCTCAGTGTGATGAAAGC+TGG | + | chr2_1:69493929-69493948 | None:intergenic | 45.0% | |
| AACAAGGTTTACCTGGAAGC+AGG | - | chr2_1:69493995-69494014 | Msa0220950:CDS | 45.0% | |
| GAATCTTCAGCGGATCAACT+TGG | - | chr2_1:69494030-69494049 | Msa0220950:intron | 45.0% | |
| CCAAATTAACAAGGCCGTCA+TGG | + | chr2_1:69494192-69494211 | None:intergenic | 45.0% | |
| !! | CCATGACGGCCTTGTTAATT+TGG | - | chr2_1:69494189-69494208 | Msa0220950:intron | 45.0% |
| !! | TGACGGCCTTGTTAATTTGG+GGG | - | chr2_1:69494192-69494211 | Msa0220950:intron | 45.0% |
| ATCCCTCCCCCAAATTAACA+AGG | + | chr2_1:69494201-69494220 | None:intergenic | 45.0% | |
| GCTGCCTGAAATAAGTTCGT+TGG | - | chr2_1:69494303-69494322 | Msa0220950:five_prime_UTR | 45.0% | |
| ! | AACCGTACGGTTCGGGAATT+GGG | + | chr2_1:69490198-69490217 | None:intergenic | 50.0% |
| ! | AAACCGTACGGTTCGGGAAT+TGG | + | chr2_1:69490199-69490218 | None:intergenic | 50.0% |
| AACGCGAAAGTTCCAAGTGG+TGG | - | chr2_1:69490554-69490573 | Msa0220950:CDS | 50.0% | |
| !! | GGGTGCGTTGTTTGTTGTGT+AGG | - | chr2_1:69490787-69490806 | Msa0220950:intron | 50.0% |
| TGTTCGTGCACGTCCTCATT+TGG | - | chr2_1:69490868-69490887 | Msa0220950:intron | 50.0% | |
| GCAGATGGTAAGTCCCTGTT+TGG | - | chr2_1:69490919-69490938 | Msa0220950:intron | 50.0% | |
| GTCCTTTCTCCCACTTTCAC+AGG | - | chr2_1:69492359-69492378 | Msa0220950:intron | 50.0% | |
| ACCCTGTGAAAGTGGGAGAA+AGG | + | chr2_1:69492364-69492383 | None:intergenic | 50.0% | |
| TAAACTGTAGGTAGCTGGCC+AGG | + | chr2_1:69492623-69492642 | None:intergenic | 50.0% | |
| CCAAGGGTCCGATAAACTGT+AGG | + | chr2_1:69492635-69492654 | None:intergenic | 50.0% | |
| CCTACAGTTTATCGGACCCT+TGG | - | chr2_1:69492632-69492651 | Msa0220950:intron | 50.0% | |
| ! | CCGCTGTGTAATAAGTTGGC+TGG | + | chr2_1:69492732-69492751 | None:intergenic | 50.0% |
| CCTCCCGCTGTGTAATAAGT+TGG | + | chr2_1:69492736-69492755 | None:intergenic | 50.0% | |
| CCAACTTATTACACAGCGGG+AGG | - | chr2_1:69492733-69492752 | Msa0220950:intron | 50.0% | |
| ! | CAAACCATGTTGCTTGGGTG+AGG | - | chr2_1:69492802-69492821 | Msa0220950:intron | 50.0% |
| GATACCTCACCCAAGCAACA+TGG | + | chr2_1:69492809-69492828 | None:intergenic | 50.0% | |
| TCCGGAAGATTCTGACTGAG+AGG | - | chr2_1:69493134-69493153 | Msa0220950:intron | 50.0% | |
| CCCTCTCAGTCAGAATCTTC+CGG | + | chr2_1:69493138-69493157 | None:intergenic | 50.0% | |
| CCGGAAGATTCTGACTGAGA+GGG | - | chr2_1:69493135-69493154 | Msa0220950:intron | 50.0% | |
| TGCTGCAATTGAAGCCAAGC+AGG | - | chr2_1:69493225-69493244 | Msa0220950:intron | 50.0% | |
| TGCAATTGAAGCCAAGCAGG+TGG | - | chr2_1:69493228-69493247 | Msa0220950:intron | 50.0% | |
| ! | CAATGGCTTGTCCGATCAGT+TGG | + | chr2_1:69493898-69493917 | None:intergenic | 50.0% |
| AACATGTGCTATCTCCCTCG+CGG | + | chr2_1:69493960-69493979 | None:intergenic | 50.0% | |
| GCAAAAGATCACCTGCTTCC+AGG | + | chr2_1:69494009-69494028 | None:intergenic | 50.0% | |
| !! | GGCCTTGTTAATTTGGGGGA+GGG | - | chr2_1:69494196-69494215 | Msa0220950:intron | 50.0% |
| TCCCCAATTCCCGAACCGTA+CGG | - | chr2_1:69490193-69490212 | Msa0220950:three_prime_UTR | 55.0% | |
| ! | ACCGTACGGTTCGGGAATTG+GGG | + | chr2_1:69490197-69490216 | None:intergenic | 55.0% |
| GATTCCGTGGTTTGAGAGGC+CGG | - | chr2_1:69490835-69490854 | Msa0220950:intron | 55.0% | |
| ATCACCGGCCTCTCAAACCA+CGG | + | chr2_1:69490842-69490861 | None:intergenic | 55.0% | |
| TGGGAGTCGTGATCTGCAGA+TGG | - | chr2_1:69490904-69490923 | Msa0220950:intron | 55.0% | |
| GTCCTTACTCGTCCTTTGCC+TGG | - | chr2_1:69492602-69492621 | Msa0220950:intron | 55.0% | |
| TTCTTGTGCAGCCACCTGCT+TGG | + | chr2_1:69493242-69493261 | None:intergenic | 55.0% | |
| TGGCTGCACAAGAAGCTGAG+AGG | - | chr2_1:69493248-69493267 | Msa0220950:intron | 55.0% | |
| GGCTGCACAAGAAGCTGAGA+GGG | - | chr2_1:69493249-69493268 | Msa0220950:intron | 55.0% | |
| TGAGGAAGATAGAAGCCGCG+AGG | - | chr2_1:69493942-69493961 | Msa0220950:CDS | 55.0% | |
| GAGGAAGATAGAAGCCGCGA+GGG | - | chr2_1:69493943-69493962 | Msa0220950:CDS | 55.0% | |
| !! | CGGCCTTGTTAATTTGGGGG+AGG | - | chr2_1:69494195-69494214 | Msa0220950:intron | 55.0% |
| GTTGATGCAGCGCCACCACT+TGG | + | chr2_1:69490569-69490588 | None:intergenic | 60.0% | |
| ! | TGGTGGCGCTGCATCAACAC+TGG | - | chr2_1:69490571-69490590 | Msa0220950:CDS | 60.0% |
| GGCCAGGCAAAGGACGAGTA+AGG | + | chr2_1:69492607-69492626 | None:intergenic | 60.0% | |
| GTAGGTAGCTGGCCAGGCAA+AGG | + | chr2_1:69492617-69492636 | None:intergenic | 60.0% | |
| GCAGTTACTGCTGTGGTGCC+TGG | - | chr2_1:69493356-69493375 | Msa0220950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 69490156 | 69494427 | 69490156 | ID=Msa0220950;Name=Msa0220950 |
| chr2_1 | mRNA | 69490156 | 69494427 | 69490156 | ID=Msa0220950-mRNA-1;Parent=Msa0220950;Name=Msa0220950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=160|0.8|0.83|1|0.8|0.83|6|358|267 |
| chr2_1 | exon | 69490156 | 69490705 | 69490156 | ID=Msa0220950-mRNA-1:exon:19708;Parent=Msa0220950-mRNA-1 |
| chr2_1 | exon | 69491253 | 69491465 | 69491253 | ID=Msa0220950-mRNA-1:exon:19707;Parent=Msa0220950-mRNA-1 |
| chr2_1 | exon | 69491829 | 69491999 | 69491829 | ID=Msa0220950-mRNA-1:exon:19706;Parent=Msa0220950-mRNA-1 |
| chr2_1 | exon | 69493715 | 69493774 | 69493715 | ID=Msa0220950-mRNA-1:exon:19705;Parent=Msa0220950-mRNA-1 |
| chr2_1 | exon | 69493874 | 69494041 | 69493874 | ID=Msa0220950-mRNA-1:exon:19704;Parent=Msa0220950-mRNA-1 |
| chr2_1 | exon | 69494268 | 69494427 | 69494268 | ID=Msa0220950-mRNA-1:exon:19703;Parent=Msa0220950-mRNA-1 |
| chr2_1 | five_prime_UTR | 69494268 | 69494427 | 69494268 | ID=Msa0220950-mRNA-1:five_prime_utr;Parent=Msa0220950-mRNA-1 |
| chr2_1 | CDS | 69493874 | 69494041 | 69493874 | ID=Msa0220950-mRNA-1:cds;Parent=Msa0220950-mRNA-1 |
| chr2_1 | CDS | 69493715 | 69493774 | 69493715 | ID=Msa0220950-mRNA-1:cds;Parent=Msa0220950-mRNA-1 |
| chr2_1 | CDS | 69491829 | 69491999 | 69491829 | ID=Msa0220950-mRNA-1:cds;Parent=Msa0220950-mRNA-1 |
| chr2_1 | CDS | 69491253 | 69491465 | 69491253 | ID=Msa0220950-mRNA-1:cds;Parent=Msa0220950-mRNA-1 |
| chr2_1 | CDS | 69490514 | 69490705 | 69490514 | ID=Msa0220950-mRNA-1:cds;Parent=Msa0220950-mRNA-1 |
| chr2_1 | three_prime_UTR | 69490156 | 69490513 | 69490156 | ID=Msa0220950-mRNA-1:three_prime_utr;Parent=Msa0220950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
