Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979820 | XP_013451444.1 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 1.54e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979820 | sp|P92792|TOM20_SOLTU | 74.611 | 193 | 48 | 1 | 5 | 197 | 4 | 195 | 1.30e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979820 | A0A072U6U8 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 7.33e-147 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003330 | Msa0979820 | 0.801440 | 8.995723e-49 | -8.615850e-47 |
| Msa0098210 | Msa0979820 | 0.803235 | 3.840958e-49 | -8.615850e-47 |
| Msa0220950 | Msa0979820 | 0.840267 | 9.637014e-58 | -8.615850e-47 |
| Msa0979820 | Msa1116940 | 0.800820 | 1.204599e-48 | -8.615850e-47 |
| Msa0979820 | Msa1213850 | 0.829839 | 4.112439e-55 | -8.615850e-47 |
| Msa0979820 | Msa1235950 | 0.815405 | 9.403104e-52 | -8.615850e-47 |
| Msa0979820 | Msa1235980 | 0.824848 | 6.461316e-54 | -8.615850e-47 |
| Msa0979820 | Msa1407550 | 0.813589 | 2.370810e-51 | -8.615850e-47 |
| Msa0979820 | Msa1433910 | 0.825959 | 3.526674e-54 | -8.615850e-47 |
| Msa0979820 | Msa1453530 | 0.845146 | 4.870561e-59 | -8.615850e-47 |
| Msa0979820 | Msa1465700 | 0.851780 | 7.101773e-61 | -8.615850e-47 |
| Msa0485220 | Msa0979820 | 0.829282 | 5.618290e-55 | -8.615850e-47 |
| Msa0574780 | Msa0979820 | 0.800779 | 1.227782e-48 | -8.615850e-47 |
| Msa0877540 | Msa0979820 | 0.822625 | 2.143600e-53 | -8.615850e-47 |
| Msa0943180 | Msa0979820 | 0.938767 | 3.898266e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979820 | MtrunA17_Chr6g0459751 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 1.41e-150 | 416 |
| Msa0979820 | MtrunA17_Chr3g0122551 | 58.416 | 202 | 84 | 0 | 1 | 202 | 1 | 202 | 6.27e-80 | 237 |
| Msa0979820 | MtrunA17_Chr6g0467501 | 40.000 | 200 | 81 | 2 | 1 | 166 | 1 | 195 | 8.10e-33 | 124 |
| Msa0979820 | MtrunA17_Chr6g0455921 | 42.767 | 159 | 67 | 3 | 21 | 163 | 8 | 158 | 3.59e-27 | 101 |
| Msa0979820 | MtrunA17_Chr6g0453351 | 36.628 | 172 | 94 | 4 | 7 | 167 | 6 | 173 | 2.05e-25 | 99.0 |
| Msa0979820 | MtrunA17_Chr7g0262471 | 36.364 | 176 | 97 | 3 | 1 | 162 | 1 | 175 | 1.26e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979820 | AT3G27080.1 | 59.701 | 201 | 75 | 2 | 5 | 202 | 4 | 201 | 2.79e-81 | 241 |
| Msa0979820 | AT1G27390.1 | 54.327 | 208 | 88 | 1 | 1 | 201 | 1 | 208 | 6.36e-81 | 240 |
| Msa0979820 | AT5G40930.1 | 57.071 | 198 | 70 | 4 | 1 | 198 | 1 | 183 | 5.95e-71 | 214 |
| Msa0979820 | AT3G27070.1 | 51.042 | 192 | 83 | 2 | 8 | 194 | 1 | 186 | 3.25e-60 | 187 |
| Msa0979820 | AT5G40930.2 | 63.768 | 138 | 47 | 2 | 1 | 138 | 1 | 135 | 9.17e-55 | 172 |
| Msa0979820 | AT1G27390.2 | 53.289 | 152 | 64 | 1 | 57 | 201 | 1 | 152 | 5.86e-53 | 167 |
| Msa0979820 | AT3G27070.2 | 47.482 | 139 | 62 | 2 | 61 | 194 | 114 | 246 | 4.10e-36 | 127 |
Find 80 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTGAGTTTCTAGGGTTT+TGG | 0.198070 | 6_4:+17145347 | None:intergenic |
| CATACGATGAATATGGTAAA+TGG | 0.294003 | 6_4:+17141072 | None:intergenic |
| CCAACAAGCATGACGCTCTT+TGG | 0.320617 | 6_4:-17143388 | Msa0979820:CDS |
| ACTTTAGCCTCGTCCACATC+TGG | 0.325905 | 6_4:+17143326 | None:intergenic |
| AAACTTCCATACGATGAATA+TGG | 0.351856 | 6_4:+17141065 | None:intergenic |
| TCCATGGAATCTGAGTTTCT+AGG | 0.353221 | 6_4:+17145340 | None:intergenic |
| ATCAGCATCGAGAGGGTTCT+TGG | 0.367687 | 6_4:+17145246 | None:intergenic |
| TGGCTGTTGGCATTGTTACA+TGG | 0.380557 | 6_4:-17141257 | Msa0979820:CDS |
| CAAAGAGCGTCATGCTTGTT+GGG | 0.385130 | 6_4:+17143389 | None:intergenic |
| TATTTGATTTGATACATTGC+TGG | 0.394585 | 6_4:-17141173 | Msa0979820:three_prime_UTR |
| CCAAAGAGCGTCATGCTTGT+TGG | 0.403594 | 6_4:+17143388 | None:intergenic |
| GAAATACATAAGCATGGATT+AGG | 0.408868 | 6_4:-17142025 | Msa0979820:CDS |
| TTATGTTTAAGCCAAAGTTT+TGG | 0.409971 | 6_4:-17140824 | Msa0979820:three_prime_UTR |
| CTGGAGGAGGTGGTGGTGGT+AGG | 0.421770 | 6_4:+17141214 | None:intergenic |
| GCATGACGCTCTTTGGTGCC+TGG | 0.428053 | 6_4:-17143381 | Msa0979820:CDS |
| CAATACTTGATTAGTAACTT+TGG | 0.429169 | 6_4:+17140871 | None:intergenic |
| GAATGGTGCTTGGATGTAGA+AGG | 0.432058 | 6_4:-17141008 | Msa0979820:three_prime_UTR |
| CGTGGAGCTGGAGGAGGTGG+TGG | 0.435306 | 6_4:+17141207 | None:intergenic |
| CGAACTCTACCGCAAATCAT+TGG | 0.437270 | 6_4:-17143151 | Msa0979820:CDS |
| CCATGGAATCTGAGTTTCTA+GGG | 0.438373 | 6_4:+17145341 | None:intergenic |
| GGAGCTGGAGGAGGTGGTGG+TGG | 0.438402 | 6_4:+17141210 | None:intergenic |
| CTCTGCAGAATTTGACAAGA+TGG | 0.446686 | 6_4:-17144108 | Msa0979820:intron |
| TTCAGATGCTATTTCAAAGC+TGG | 0.452976 | 6_4:-17143432 | Msa0979820:intron |
| GTTGGCATTGTTACATGGGT+GGG | 0.459171 | 6_4:-17141252 | Msa0979820:CDS |
| AACATAATAATTTGTTGCCA+AGG | 0.461672 | 6_4:-17140848 | Msa0979820:three_prime_UTR |
| GGCTGTTGGCATTGTTACAT+GGG | 0.462217 | 6_4:-17141256 | Msa0979820:CDS |
| TTCGTTCTGTTGCAAATCCA+TGG | 0.462675 | 6_4:+17145324 | None:intergenic |
| TCTCAACAATGCCAAAACTT+TGG | 0.469367 | 6_4:+17140813 | None:intergenic |
| AGGGTCATCTTCTTTGACTC+GGG | 0.469648 | 6_4:+17144046 | None:intergenic |
| CAGCCACTTCCAATGATTTG+CGG | 0.472358 | 6_4:+17143142 | None:intergenic |
| CCCTAGAAACTCAGATTCCA+TGG | 0.472505 | 6_4:-17145341 | Msa0979820:exon |
| CATGACGCTCTTTGGTGCCT+GGG | 0.480309 | 6_4:-17143380 | Msa0979820:CDS |
| TTGCGGTAGAGTTCGTTTGA+AGG | 0.482619 | 6_4:+17143159 | None:intergenic |
| ATCATTGGAAGTGGCTGCTA+AGG | 0.490666 | 6_4:-17143136 | Msa0979820:intron |
| AGCTTCGCTTATCGTGGAGC+TGG | 0.491164 | 6_4:+17141195 | None:intergenic |
| CATTTACCATATTCATCGTA+TGG | 0.496233 | 6_4:-17141071 | Msa0979820:three_prime_UTR |
| TGTATTTCTACATGTAGCTC+AGG | 0.497343 | 6_4:+17142040 | None:intergenic |
| TTTGGCTTAAACATAAACCT+TGG | 0.502786 | 6_4:+17140831 | None:intergenic |
| TGCTATTTCAAAGCTGGAGG+AGG | 0.506923 | 6_4:-17143426 | Msa0979820:CDS |
| TGTTGGCATTGTTACATGGG+TGG | 0.507942 | 6_4:-17141253 | Msa0979820:CDS |
| TATCGTGGAGCTGGAGGAGG+TGG | 0.508794 | 6_4:+17141204 | None:intergenic |
| GTTAGATATTACCTTTGTAC+CGG | 0.517335 | 6_4:+17141964 | None:intergenic |
| GCTGGTCCATCTTCTTCTGC+CGG | 0.517761 | 6_4:-17141983 | Msa0979820:CDS |
| TCTGCAGAATTTGACAAGAT+GGG | 0.521349 | 6_4:-17144107 | Msa0979820:intron |
| CATACTTGGATGGGTAATCC+TGG | 0.525797 | 6_4:-17141277 | Msa0979820:CDS |
| CTTTAGCCTCGTCCACATCT+GGG | 0.526481 | 6_4:+17143327 | None:intergenic |
| AAGGGTCATCTTCTTTGACT+CGG | 0.533813 | 6_4:+17144045 | None:intergenic |
| GCTTATCGTGGAGCTGGAGG+AGG | 0.534256 | 6_4:+17141201 | None:intergenic |
| GTGAAGTGAGAGCATTTCCC+AGG | 0.534970 | 6_4:+17143363 | None:intergenic |
| TTGAGTTGAGTAGTTATGAA+TGG | 0.541803 | 6_4:-17141025 | Msa0979820:three_prime_UTR |
| TGAAGTATGACATACTTGGA+TGG | 0.544169 | 6_4:-17141287 | Msa0979820:CDS |
| GGGAAATGCTCTCACTTCAC+AGG | 0.545457 | 6_4:-17143360 | Msa0979820:CDS |
| CTACCGCAAATCATTGGAAG+TGG | 0.545747 | 6_4:-17143145 | Msa0979820:CDS |
| CAGCAAGCAGTAGAGGCAGC+TGG | 0.555623 | 6_4:-17142001 | Msa0979820:CDS |
| TTTGTACCGGCAGAAGAAGA+TGG | 0.557794 | 6_4:+17141977 | None:intergenic |
| TTCGCTTATCGTGGAGCTGG+AGG | 0.566194 | 6_4:+17141198 | None:intergenic |
| GAAGTATGACATACTTGGAT+GGG | 0.568545 | 6_4:-17141286 | Msa0979820:CDS |
| TATATACAAAGACATGAGCT+AGG | 0.568797 | 6_4:+17140903 | None:intergenic |
| ATGTAACAATGCCAACAGCC+AGG | 0.573417 | 6_4:+17141259 | None:intergenic |
| ATCTTCTTCTGCCGGTACAA+AGG | 0.573447 | 6_4:-17141975 | Msa0979820:intron |
| ATTAGGTCAGCAAGCAGTAG+AGG | 0.574544 | 6_4:-17142008 | Msa0979820:CDS |
| AGATGCTATTTCAAAGCTGG+AGG | 0.576638 | 6_4:-17143429 | Msa0979820:CDS |
| GGATGGGTAATCCTGGCTGT+TGG | 0.576660 | 6_4:-17141270 | Msa0979820:CDS |
| GAGTCAAAGAAGATGACCCT+TGG | 0.580952 | 6_4:-17144043 | Msa0979820:intron |
| CAGAATTTGACAAGATGGGG+TGG | 0.587171 | 6_4:-17144103 | Msa0979820:CDS |
| TTTAAACCCAGATGTGGACG+AGG | 0.591013 | 6_4:-17143333 | Msa0979820:CDS |
| TCAAATAGCTTCGCTTATCG+TGG | 0.591851 | 6_4:+17141189 | None:intergenic |
| CATGTAGAAATACATAAGCA+TGG | 0.592725 | 6_4:-17142031 | Msa0979820:CDS |
| CTTTCAACAAGCTGTTGATG+AGG | 0.593601 | 6_4:-17143279 | Msa0979820:intron |
| GAGTAGTTATGAATGGTGCT+TGG | 0.597632 | 6_4:-17141018 | Msa0979820:three_prime_UTR |
| CTGCAGAATTTGACAAGATG+GGG | 0.603692 | 6_4:-17144106 | Msa0979820:intron |
| CTTGGTGTATTCAGCTTCAG+CGG | 0.606207 | 6_4:+17145264 | None:intergenic |
| GACTGACATCAGCATCGAGA+GGG | 0.609421 | 6_4:+17145239 | None:intergenic |
| GATATGAAGTATGACATACT+TGG | 0.620697 | 6_4:-17141291 | Msa0979820:CDS |
| GAAGGGGCTAGTCCTCGCAA+TGG | 0.632313 | 6_4:-17140990 | Msa0979820:three_prime_UTR |
| AATGGTGCTTGGATGTAGAA+GGG | 0.633906 | 6_4:-17141007 | Msa0979820:three_prime_UTR |
| GGCTAAAGTTTACTTTGACA+AGG | 0.646740 | 6_4:-17143312 | Msa0979820:CDS |
| GAATCAGAAATTCCATTGCG+AGG | 0.676033 | 6_4:+17140978 | None:intergenic |
| ATGGTGCTTGGATGTAGAAG+GGG | 0.694156 | 6_4:-17141006 | Msa0979820:three_prime_UTR |
| AGACTGACATCAGCATCGAG+AGG | 0.704805 | 6_4:+17145238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATTGTATAATCTT+TGG | - | chr6_4:17141535-17141554 | Msa0979820:intron | 10.0% |
| !!! | TTATTATGTTTCATTTTAAA+TGG | - | chr6_4:17143590-17143609 | Msa0979820:intron | 10.0% |
| !! | AAAAAAAAAAAGGGAAAAAT+TGG | + | chr6_4:17140985-17141004 | None:intergenic | 15.0% |
| !!! | GAAATTTTGTTTGTAATTTT+TGG | - | chr6_4:17141192-17141211 | Msa0979820:exon | 15.0% |
| !!! | GAAATTTTGTGTATTATTTT+TGG | - | chr6_4:17141253-17141272 | Msa0979820:CDS | 15.0% |
| !!! | TGTATAATTTTTCGTATATA+TGG | - | chr6_4:17141496-17141515 | Msa0979820:intron | 15.0% |
| !!! | ATAATTTTGGGAATTTTTTT+TGG | - | chr6_4:17141679-17141698 | Msa0979820:intron | 15.0% |
| !! | AACAAAATTGTAAAAACAAA+AGG | + | chr6_4:17142204-17142223 | None:intergenic | 15.0% |
| !!! | TTACATGTGTTTTTATTAAA+CGG | - | chr6_4:17142315-17142334 | Msa0979820:intron | 15.0% |
| !!! | TTTTTACTACTATAAATCTA+TGG | - | chr6_4:17143359-17143378 | Msa0979820:CDS | 15.0% |
| !!! | TTTCTTTATACCTTTTTTTT+AGG | - | chr6_4:17144132-17144151 | Msa0979820:intron | 15.0% |
| !! | GAAAAAAAAATGCATTTATA+GGG | + | chr6_4:17144714-17144733 | None:intergenic | 15.0% |
| !!! | ACAAAAAATCAGATTTTTTC+AGG | + | chr6_4:17141137-17141156 | None:intergenic | 20.0% |
| !!! | GTAATTTTTGGAATTCTTTT+TGG | - | chr6_4:17141204-17141223 | Msa0979820:CDS | 20.0% |
| !!! | GAAATTTTGTGTATAATGTT+TGG | - | chr6_4:17141369-17141388 | Msa0979820:intron | 20.0% |
| !! | TGTATAATCTTTGGTATATA+TGG | - | chr6_4:17141544-17141563 | Msa0979820:intron | 20.0% |
| !!! | ATATTTGTGTTGCAAATTTT+TGG | - | chr6_4:17141618-17141637 | Msa0979820:intron | 20.0% |
| !!! | ATAATTTCTGGAAATTTTCT+TGG | - | chr6_4:17141797-17141816 | Msa0979820:intron | 20.0% |
| !!! | TGGAATTTGTGTATAATTTT+TGG | - | chr6_4:17141991-17142010 | Msa0979820:CDS | 20.0% |
| !!! | GAAATTTTGTGTATAACTTT+TGG | - | chr6_4:17142049-17142068 | Msa0979820:intron | 20.0% |
| !!! | TTACCTGTGTTTTTATTAAA+TGG | - | chr6_4:17142232-17142251 | Msa0979820:intron | 20.0% |
| !!! | GAGTGTTTTTTGTTTTATAT+AGG | - | chr6_4:17143013-17143032 | Msa0979820:intron | 20.0% |
| !!! | TTTTCCATCTGTTTTATTTA+TGG | - | chr6_4:17143139-17143158 | Msa0979820:CDS | 20.0% |
| !! | AAAACAAAGACATAAAAACA+CGG | + | chr6_4:17143713-17143732 | None:intergenic | 20.0% |
| !!! | TAAAAGAAATAAGGTTTTCA+AGG | + | chr6_4:17143808-17143827 | None:intergenic | 20.0% |
| !!! | AAAACCTTATTTCTTTTAAG+TGG | - | chr6_4:17143810-17143829 | Msa0979820:intron | 20.0% |
| !! | AAGATTTATAGTAGAACTAA+AGG | + | chr6_4:17144059-17144078 | None:intergenic | 20.0% |
| !! | TAGTGATATTGTTAATGAAA+AGG | + | chr6_4:17144083-17144102 | None:intergenic | 20.0% |
| !! | AATAAAAACATTACTATGAG+GGG | + | chr6_4:17144364-17144383 | None:intergenic | 20.0% |
| !! | CAATAAAAACATTACTATGA+GGG | + | chr6_4:17144365-17144384 | None:intergenic | 20.0% |
| !! | ACAATAAAAACATTACTATG+AGG | + | chr6_4:17144366-17144385 | None:intergenic | 20.0% |
| !! | CGAAAAAAAAATGCATTTAT+AGG | + | chr6_4:17144715-17144734 | None:intergenic | 20.0% |
| !! | TGGAAATAACCAAATAAATT+AGG | + | chr6_4:17144861-17144880 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTCTTTTTCTTTT+GGG | + | chr6_4:17144886-17144905 | None:intergenic | 20.0% |
| ! | AGATTTCAACTTTCTTATGA+TGG | - | chr6_4:17141049-17141068 | Msa0979820:three_prime_UTR | 25.0% |
| ! | GATTTCAACTTTCTTATGAT+GGG | - | chr6_4:17141050-17141069 | Msa0979820:three_prime_UTR | 25.0% |
| !!! | TTTGATTGATTTTGTGTCTA+TGG | - | chr6_4:17141088-17141107 | Msa0979820:three_prime_UTR | 25.0% |
| !!! | TTGATTGATTTTGTGTCTAT+GGG | - | chr6_4:17141089-17141108 | Msa0979820:three_prime_UTR | 25.0% |
| !!! | GTATTATTTTTGGTACACAA+AGG | - | chr6_4:17141263-17141282 | Msa0979820:CDS | 25.0% |
| !! | CAAATTCTGTGTATAGTTTT+TGG | - | chr6_4:17141302-17141321 | Msa0979820:CDS | 25.0% |
| !!! | TATAGTTTTTGGTGTTGTAT+TGG | - | chr6_4:17141313-17141332 | Msa0979820:CDS | 25.0% |
| !! | GAAATTTTGTGCATAATGTT+TGG | - | chr6_4:17141335-17141354 | Msa0979820:intron | 25.0% |
| !! | ATAATGTTTGGTAGTTGTAT+TGG | - | chr6_4:17141347-17141366 | Msa0979820:intron | 25.0% |
| ! | TGTATAATTCTTGGAACATA+TGG | - | chr6_4:17141591-17141610 | Msa0979820:intron | 25.0% |
| !!! | TTGCAAATTTTTGGTACATA+TGG | - | chr6_4:17141627-17141646 | Msa0979820:intron | 25.0% |
| !! | TGCAGATTTGTGTATAATTT+TGG | - | chr6_4:17141666-17141685 | Msa0979820:intron | 25.0% |
| !! | GCAGATTTGTGTATAATTTT+GGG | - | chr6_4:17141667-17141686 | Msa0979820:intron | 25.0% |
| !!! | ATACTTTTCTGAGATGTTTT+TGG | - | chr6_4:17141739-17141758 | Msa0979820:intron | 25.0% |
| !! | CGTATAGTTTTTGATACATA+TGG | - | chr6_4:17141852-17141871 | Msa0979820:intron | 25.0% |
| !!! | TGATTTTTGGAATTTGTTTC+TGG | - | chr6_4:17141945-17141964 | Msa0979820:intron | 25.0% |
| ! | ATATAAATGAGTTGTTGTGT+TGG | - | chr6_4:17141971-17141990 | Msa0979820:intron | 25.0% |
| !! | TGGAAATTCTTTTAGACATA+TGG | - | chr6_4:17142011-17142030 | Msa0979820:CDS | 25.0% |
| ! | ATATAGAAAATAAGCACCAA+GGG | + | chr6_4:17142173-17142192 | None:intergenic | 25.0% |
| ! | ATTGTAAAAACAAAGAGACT+AGG | + | chr6_4:17142198-17142217 | None:intergenic | 25.0% |
| ! | GAACCATTTAATAAAAACAC+AGG | + | chr6_4:17142238-17142257 | None:intergenic | 25.0% |
| ! | TTGTAAAAACAAAAGGACAA+GGG | + | chr6_4:17142280-17142299 | None:intergenic | 25.0% |
| ! | ATTGTAAAAACAAAAGGACA+AGG | + | chr6_4:17142281-17142300 | None:intergenic | 25.0% |
| !! | AACAGAAATAACAGTGTTTT+TGG | + | chr6_4:17142534-17142553 | None:intergenic | 25.0% |
| !!! | TTTTTTATCATATTGTCGTG+CGG | - | chr6_4:17143104-17143123 | Msa0979820:intron | 25.0% |
| ! | ACTTCCATAAATAAAACAGA+TGG | + | chr6_4:17143146-17143165 | None:intergenic | 25.0% |
| !!! | AATGACAATCGTAATTTGTT+TGG | - | chr6_4:17143190-17143209 | Msa0979820:intron | 25.0% |
| !! | TATTGATTATCCTTATAAGC+TGG | + | chr6_4:17143303-17143322 | None:intergenic | 25.0% |
| ! | ATAAGTGTTCCTTGAAAATA+AGG | - | chr6_4:17143320-17143339 | Msa0979820:CDS | 25.0% |
| ! | TAAATCTATGGTCATAGAAA+AGG | - | chr6_4:17143371-17143390 | Msa0979820:CDS | 25.0% |
| ! | AAACAAAGACATAAAAACAC+GGG | + | chr6_4:17143712-17143731 | None:intergenic | 25.0% |
| ! | GCAAGCAATTAAGATTAAAT+CGG | - | chr6_4:17143760-17143779 | Msa0979820:intron | 25.0% |
| ! | TCACTAACATATTCTTAAAC+TGG | - | chr6_4:17144097-17144116 | Msa0979820:CDS | 25.0% |
| ! | ACTCTATCTTGACAATATTA+AGG | + | chr6_4:17144570-17144589 | None:intergenic | 25.0% |
| ! | ATTGTCAAGATAGAGTAATT+AGG | - | chr6_4:17144574-17144593 | Msa0979820:intron | 25.0% |
| ! | AGAAACTCACCTAATTTATT+TGG | - | chr6_4:17144849-17144868 | Msa0979820:intron | 25.0% |
| !!! | CACTGTTTTTCTTTTTCTTT+TGG | + | chr6_4:17144887-17144906 | None:intergenic | 25.0% |
| !!! | TATTTGATTTGATACATTGC+TGG | - | chr6_4:17145024-17145043 | Msa0979820:intron | 25.0% |
| ! | TCAAAAAACGAAATACTAAG+TGG | + | chr6_4:17145079-17145098 | None:intergenic | 25.0% |
| ! | CAATACTTGATTAGTAACTT+TGG | + | chr6_4:17145329-17145348 | None:intergenic | 25.0% |
| !!! | AACATAATAATTTGTTGCCA+AGG | - | chr6_4:17145349-17145368 | Msa0979820:five_prime_UTR | 25.0% |
| !! | TTATGTTTAAGCCAAAGTTT+TGG | - | chr6_4:17145373-17145392 | Msa0979820:five_prime_UTR | 25.0% |
| !! | TATGAATGAGTTTGTTGTGT+TGG | - | chr6_4:17141231-17141250 | Msa0979820:CDS | 30.0% |
| ! | TTTGGTTCATATGCTTATGT+TGG | - | chr6_4:17141387-17141406 | Msa0979820:intron | 30.0% |
| !! | TTTTTGATTAGTTGTTGTGC+TGG | - | chr6_4:17141425-17141444 | Msa0979820:intron | 30.0% |
| TACACAATATCTACACAACT+AGG | + | chr6_4:17141480-17141499 | None:intergenic | 30.0% | |
| GCAAATCTGTGTATAATTCT+TGG | - | chr6_4:17141582-17141601 | Msa0979820:intron | 30.0% | |
| ATAATTCTTGGAACATATGG+AGG | - | chr6_4:17141594-17141613 | Msa0979820:intron | 30.0% | |
| !!! | GGAATTTTTTTTGGTACGTA+TGG | - | chr6_4:17141688-17141707 | Msa0979820:intron | 30.0% |
| TGGAAATGGTGTATAATTTC+TGG | - | chr6_4:17141785-17141804 | Msa0979820:intron | 30.0% | |
| ! | GGAAATTTTCTTGGTACATA+TGG | - | chr6_4:17141806-17141825 | Msa0979820:intron | 30.0% |
| TTGATACATATGGATGTTCT+TGG | - | chr6_4:17141862-17141881 | Msa0979820:intron | 30.0% | |
| TGATACATATGGATGTTCTT+GGG | - | chr6_4:17141863-17141882 | Msa0979820:intron | 30.0% | |
| !! | TTGGAGATTTGGAATGTTTT+TGG | - | chr6_4:17141886-17141905 | Msa0979820:intron | 30.0% |
| !!! | AATGTTTTTGGTACATACAG+AGG | - | chr6_4:17141898-17141917 | Msa0979820:intron | 30.0% |
| !!! | CATATGGTGAGTTGTTATTT+TGG | - | chr6_4:17142027-17142046 | Msa0979820:CDS | 30.0% |
| CATATAGAAAATAAGCACCA+AGG | + | chr6_4:17142174-17142193 | None:intergenic | 30.0% | |
| AATGGTTCTTGTGTTATGTT+TGG | - | chr6_4:17142250-17142269 | Msa0979820:intron | 30.0% | |
| TATTTCCCCGTATCATTATA+TGG | + | chr6_4:17142436-17142455 | None:intergenic | 30.0% | |
| !! | ATTTTGAGTCAGAATCACTA+AGG | - | chr6_4:17142586-17142605 | Msa0979820:intron | 30.0% |
| AGTCGTTTGATTGTATCTAA+TGG | - | chr6_4:17142619-17142638 | Msa0979820:intron | 30.0% | |
| !!! | GAACATTCGTTTGTTTTTTG+TGG | - | chr6_4:17142720-17142739 | Msa0979820:intron | 30.0% |
| TGGATTTCTCACTTGAAATT+TGG | - | chr6_4:17142740-17142759 | Msa0979820:intron | 30.0% | |
| GTCATTTCTATATTACAGTG+AGG | + | chr6_4:17143176-17143195 | None:intergenic | 30.0% | |
| ! | GAGAAACCTAACATCTTTTT+CGG | - | chr6_4:17143220-17143239 | Msa0979820:intron | 30.0% |
| ! | ATTTTGTGTTCCCTTATTGA+AGG | - | chr6_4:17143250-17143269 | Msa0979820:intron | 30.0% |
| TATAAGCTGGTCATCTTAAA+CGG | + | chr6_4:17143290-17143309 | None:intergenic | 30.0% | |
| ! | TTTAAGATGACCAGCTTATA+AGG | - | chr6_4:17143290-17143309 | Msa0979820:CDS | 30.0% |
| !!! | AACACAAGTCCTTATTTTCA+AGG | + | chr6_4:17143332-17143351 | None:intergenic | 30.0% |
| ATAACGCAATTACAACTACA+TGG | + | chr6_4:17143574-17143593 | None:intergenic | 30.0% | |
| !! | AGAAATAAGGTTTTCAAGGT+TGG | + | chr6_4:17143804-17143823 | None:intergenic | 30.0% |
| !! | ACCTTATTTCTTTTAAGTGG+AGG | - | chr6_4:17143813-17143832 | Msa0979820:intron | 30.0% |
| !! | CCTTATTTCTTTTAAGTGGA+GGG | - | chr6_4:17143814-17143833 | Msa0979820:intron | 30.0% |
| GTAAGGGAACAAAGTAATAA+GGG | + | chr6_4:17143890-17143909 | None:intergenic | 30.0% | |
| AGTAAGGGAACAAAGTAATA+AGG | + | chr6_4:17143891-17143910 | None:intergenic | 30.0% | |
| AGTTCAGCATAAAAGAAAGA+TGG | + | chr6_4:17143962-17143981 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGGTTTTTGTAGTT+TGG | - | chr6_4:17143997-17144016 | Msa0979820:intron | 30.0% |
| ! | TTTTTGTAGTTTGGTCTCTT+GGG | - | chr6_4:17144006-17144025 | Msa0979820:intron | 30.0% |
| CATGTAGAAATACATAAGCA+TGG | - | chr6_4:17144166-17144185 | Msa0979820:intron | 30.0% | |
| GAAATACATAAGCATGGATT+AGG | - | chr6_4:17144172-17144191 | Msa0979820:intron | 30.0% | |
| GTTAGATATTACCTTTGTAC+CGG | + | chr6_4:17144236-17144255 | None:intergenic | 30.0% | |
| !! | ACTTTGCTATCGTTTTCTAT+TGG | - | chr6_4:17144286-17144305 | Msa0979820:intron | 30.0% |
| TTAAATGTGTATGCAATCAG+AGG | + | chr6_4:17144455-17144474 | None:intergenic | 30.0% | |
| !! | AAATAGAACAGTTTGTTGAC+TGG | - | chr6_4:17144492-17144511 | Msa0979820:intron | 30.0% |
| !!! | TTGTTTTGGACACGTTTTAT+GGG | - | chr6_4:17144605-17144624 | Msa0979820:intron | 30.0% |
| GAATCAAGATCTATCAATGT+TGG | + | chr6_4:17144655-17144674 | None:intergenic | 30.0% | |
| !! | TTTTCTTTTTCTTTTGGGTC+TGG | + | chr6_4:17144881-17144900 | None:intergenic | 30.0% |
| GATATGAAGTATGACATACT+TGG | - | chr6_4:17144906-17144925 | Msa0979820:intron | 30.0% | |
| AAAAACGAAATACTAAGTGG+CGG | + | chr6_4:17145076-17145095 | None:intergenic | 30.0% | |
| ! | GACTGTTGTAATGTTTTTCA+AGG | - | chr6_4:17145097-17145116 | Msa0979820:intron | 30.0% |
| CATACGATGAATATGGTAAA+TGG | + | chr6_4:17145128-17145147 | None:intergenic | 30.0% | |
| CATTTACCATATTCATCGTA+TGG | - | chr6_4:17145126-17145145 | Msa0979820:intron | 30.0% | |
| AAACTTCCATACGATGAATA+TGG | + | chr6_4:17145135-17145154 | None:intergenic | 30.0% | |
| !! | TTGAGTTGAGTAGTTATGAA+TGG | - | chr6_4:17145172-17145191 | Msa0979820:intron | 30.0% |
| TATATACAAAGACATGAGCT+AGG | + | chr6_4:17145297-17145316 | None:intergenic | 30.0% | |
| ! | TTTGGCTTAAACATAAACCT+TGG | + | chr6_4:17145369-17145388 | None:intergenic | 30.0% |
| !!! | ATCTGAGTTTCTAGGGTTTT+GGG | + | chr6_4:17140852-17140871 | None:intergenic | 35.0% |
| !!! | AATCTGAGTTTCTAGGGTTT+TGG | + | chr6_4:17140853-17140872 | None:intergenic | 35.0% |
| !!! | TCTATGGGTGTTTTGTTGTT+AGG | - | chr6_4:17141104-17141123 | Msa0979820:three_prime_UTR | 35.0% |
| ACATGAATGAGTTGTTGTGT+TGG | - | chr6_4:17141765-17141784 | Msa0979820:intron | 35.0% | |
| ATGAGTTGTTGTGTTGGAAA+TGG | - | chr6_4:17141771-17141790 | Msa0979820:intron | 35.0% | |
| ! | AGTAGGTTGTGTGTGATTTT+TGG | - | chr6_4:17141932-17141951 | Msa0979820:intron | 35.0% |
| TCTGCAGAATTTGACAAGAT+GGG | - | chr6_4:17142090-17142109 | Msa0979820:intron | 35.0% | |
| TGTTTGGACTTGTGTTTAGA+GGG | - | chr6_4:17142349-17142368 | Msa0979820:intron | 35.0% | |
| ATTCTTCACGCTTCTTCTAT+AGG | + | chr6_4:17142404-17142423 | None:intergenic | 35.0% | |
| ! | TTTGGGGCCATATAATGATA+CGG | - | chr6_4:17142426-17142445 | Msa0979820:intron | 35.0% |
| AACTTAAGATGATATGCTGC+AGG | + | chr6_4:17142478-17142497 | None:intergenic | 35.0% | |
| ATATTCTGACTGCAGCAAAT+CGG | - | chr6_4:17142671-17142690 | Msa0979820:intron | 35.0% | |
| !! | TTCAGATGCTATTTCAAAGC+TGG | - | chr6_4:17142765-17142784 | Msa0979820:intron | 35.0% |
| GGCTAAAGTTTACTTTGACA+AGG | - | chr6_4:17142885-17142904 | Msa0979820:intron | 35.0% | |
| GTACAGTATCATTGAAGTGT+GGG | - | chr6_4:17142940-17142959 | Msa0979820:intron | 35.0% | |
| ! | AGGTATGTTCGGTGATTTAA+TGG | - | chr6_4:17143081-17143100 | Msa0979820:intron | 35.0% |
| GGAACTGAAAATTCAAAACC+CGG | + | chr6_4:17143441-17143460 | None:intergenic | 35.0% | |
| ! | ATATCCAGCTTTGTAAAGCA+TGG | + | chr6_4:17143462-17143481 | None:intergenic | 35.0% |
| TTGCAGATAAGATGTGATTC+TGG | + | chr6_4:17143627-17143646 | None:intergenic | 35.0% | |
| AATCGGTCTTCCTGTTAAAA+AGG | - | chr6_4:17143777-17143796 | Msa0979820:intron | 35.0% | |
| CCCTCCACTTAAAAGAAATA+AGG | + | chr6_4:17143817-17143836 | None:intergenic | 35.0% | |
| TAAGGGTTCAGTTTCTTAAC+AGG | + | chr6_4:17143873-17143892 | None:intergenic | 35.0% | |
| CGATCAACAAAGTAGAGTAA+GGG | + | chr6_4:17143906-17143925 | None:intergenic | 35.0% | |
| ACGATCAACAAAGTAGAGTA+AGG | + | chr6_4:17143907-17143926 | None:intergenic | 35.0% | |
| !! | CTTGTTTGTCGACTACTTTT+AGG | - | chr6_4:17143931-17143950 | Msa0979820:intron | 35.0% |
| ! | TTCTTTCTCTGCATGTGTTT+TGG | - | chr6_4:17143983-17144002 | Msa0979820:intron | 35.0% |
| ! | GTTTTTGTAGTTTGGTCTCT+TGG | - | chr6_4:17144005-17144024 | Msa0979820:intron | 35.0% |
| AACTAAAGGATGCATGAGAA+TGG | + | chr6_4:17144045-17144064 | None:intergenic | 35.0% | |
| ! | TGTATTTCTACATGTAGCTC+AGG | + | chr6_4:17144160-17144179 | None:intergenic | 35.0% |
| !! | ATTGTTTTTCACTGAGACTC+AGG | - | chr6_4:17144392-17144411 | Msa0979820:intron | 35.0% |
| !!! | GACTGGAATTCGTTGTTTTT+TGG | - | chr6_4:17144509-17144528 | Msa0979820:intron | 35.0% |
| !!! | ATTAGGCGACTTTGTTGTTT+TGG | - | chr6_4:17144591-17144610 | Msa0979820:intron | 35.0% |
| !!! | GTTGTTTTGGACACGTTTTA+TGG | - | chr6_4:17144604-17144623 | Msa0979820:intron | 35.0% |
| ! | GTTTTATGGGATGAGTTTGT+AGG | - | chr6_4:17144618-17144637 | Msa0979820:intron | 35.0% |
| ACACACAGATACACTAGTTA+TGG | + | chr6_4:17144677-17144696 | None:intergenic | 35.0% | |
| TTGTCAGATCTTGAGATCAA+TGG | - | chr6_4:17144769-17144788 | Msa0979820:intron | 35.0% | |
| TGAAGTATGACATACTTGGA+TGG | - | chr6_4:17144910-17144929 | Msa0979820:intron | 35.0% | |
| GAAGTATGACATACTTGGAT+GGG | - | chr6_4:17144911-17144930 | Msa0979820:intron | 35.0% | |
| CCATGGAATCTGAGTTTCTA+GGG | + | chr6_4:17140859-17140878 | None:intergenic | 40.0% | |
| TCCATGGAATCTGAGTTTCT+AGG | + | chr6_4:17140860-17140879 | None:intergenic | 40.0% | |
| TTCGTTCTGTTGCAAATCCA+TGG | + | chr6_4:17140876-17140895 | None:intergenic | 40.0% | |
| ! | TGGTACATATGGTTGAGTTG+TGG | - | chr6_4:17141817-17141836 | Msa0979820:intron | 40.0% |
| ! | ATATGGTTGAGTTGTGGTGT+TGG | - | chr6_4:17141823-17141842 | Msa0979820:intron | 40.0% |
| ACATATGGATGTTCTTGGGT+TGG | - | chr6_4:17141867-17141886 | Msa0979820:intron | 40.0% | |
| !! | ATGTTCTTGGGTTGGAGATT+TGG | - | chr6_4:17141875-17141894 | Msa0979820:intron | 40.0% |
| CTCTGCAGAATTTGACAAGA+TGG | - | chr6_4:17142089-17142108 | Msa0979820:intron | 40.0% | |
| CTGCAGAATTTGACAAGATG+GGG | - | chr6_4:17142091-17142110 | Msa0979820:intron | 40.0% | |
| AAGGGTCATCTTCTTTGACT+CGG | + | chr6_4:17142155-17142174 | None:intergenic | 40.0% | |
| ! | AACGGTTTTTGTGTCGTGTT+TGG | - | chr6_4:17142333-17142352 | Msa0979820:intron | 40.0% |
| GTGTTTGGACTTGTGTTTAG+AGG | - | chr6_4:17142348-17142367 | Msa0979820:intron | 40.0% | |
| GTTTGGACTTGTGTTTAGAG+GGG | - | chr6_4:17142350-17142369 | Msa0979820:intron | 40.0% | |
| ! | AAGAAGCGTGAAGAATGCTT+TGG | - | chr6_4:17142408-17142427 | Msa0979820:intron | 40.0% |
| ! | AGAAGCGTGAAGAATGCTTT+GGG | - | chr6_4:17142409-17142428 | Msa0979820:intron | 40.0% |
| TTGGGGCCATATAATGATAC+GGG | - | chr6_4:17142427-17142446 | Msa0979820:intron | 40.0% | |
| TATTCTGACTGCAGCAAATC+GGG | - | chr6_4:17142672-17142691 | Msa0979820:intron | 40.0% | |
| !! | AGATGCTATTTCAAAGCTGG+AGG | - | chr6_4:17142768-17142787 | Msa0979820:intron | 40.0% |
| ! | GGCATTTTTAAACCCAGATG+TGG | - | chr6_4:17142858-17142877 | Msa0979820:intron | 40.0% |
| CTTTCAACAAGCTGTTGATG+AGG | - | chr6_4:17142918-17142937 | Msa0979820:intron | 40.0% | |
| GGTACAGTATCATTGAAGTG+TGG | - | chr6_4:17142939-17142958 | Msa0979820:intron | 40.0% | |
| ACTCGACCGAAAAAGATGTT+AGG | + | chr6_4:17143229-17143248 | None:intergenic | 40.0% | |
| CCAGTGAACTCCTTCAATAA+GGG | + | chr6_4:17143263-17143282 | None:intergenic | 40.0% | |
| ACCAGTGAACTCCTTCAATA+AGG | + | chr6_4:17143264-17143283 | None:intergenic | 40.0% | |
| GGTCATAGAAAAGGAATGAC+TGG | - | chr6_4:17143380-17143399 | Msa0979820:CDS | 40.0% | |
| GAACATGTACCTCGTTGAAA+AGG | + | chr6_4:17143411-17143430 | None:intergenic | 40.0% | |
| AGGTACATGTTCGATTAGAC+CGG | - | chr6_4:17143419-17143438 | Msa0979820:CDS | 40.0% | |
| AGTTCCATGCTTTACAAAGC+TGG | - | chr6_4:17143455-17143474 | Msa0979820:intron | 40.0% | |
| TTTGCAAACCACAGCACAAT+GGG | + | chr6_4:17143489-17143508 | None:intergenic | 40.0% | |
| ! | GATTTTTCTTCAGCGTAGCA+AGG | + | chr6_4:17143739-17143758 | None:intergenic | 40.0% |
| ! | CAAGGTTGGACCTTTTTAAC+AGG | + | chr6_4:17143790-17143809 | None:intergenic | 40.0% |
| TAACAGGAAGGCAGATCAAA+AGG | + | chr6_4:17143857-17143876 | None:intergenic | 40.0% | |
| GGTTCAGTTTCTTAACAGGA+AGG | + | chr6_4:17143869-17143888 | None:intergenic | 40.0% | |
| AGCTCAGGAGCCTAAAAAAA+AGG | + | chr6_4:17144145-17144164 | None:intergenic | 40.0% | |
| ! | TTGAGATCAATGGTTCTGTC+TGG | - | chr6_4:17144779-17144798 | Msa0979820:intron | 40.0% |
| ! | TCTGGTTTCTTGTTGGATCT+TGG | - | chr6_4:17144797-17144816 | Msa0979820:intron | 40.0% |
| TCAAATAGCTTCGCTTATCG+TGG | + | chr6_4:17145011-17145030 | None:intergenic | 40.0% | |
| GAGTAGTTATGAATGGTGCT+TGG | - | chr6_4:17145179-17145198 | Msa0979820:intron | 40.0% | |
| AATGGTGCTTGGATGTAGAA+GGG | - | chr6_4:17145190-17145209 | Msa0979820:intron | 40.0% | |
| GAATCAGAAATTCCATTGCG+AGG | + | chr6_4:17145222-17145241 | None:intergenic | 40.0% | |
| CCCTAGAAACTCAGATTCCA+TGG | - | chr6_4:17140856-17140875 | Msa0979820:three_prime_UTR | 45.0% | |
| ! | CTTGGTGTATTCAGCTTCAG+CGG | + | chr6_4:17140936-17140955 | None:intergenic | 45.0% |
| CAGAATTTGACAAGATGGGG+TGG | - | chr6_4:17142094-17142113 | Msa0979820:intron | 45.0% | |
| AGGGTCATCTTCTTTGACTC+GGG | + | chr6_4:17142154-17142173 | None:intergenic | 45.0% | |
| GAGTCAAAGAAGATGACCCT+TGG | - | chr6_4:17142154-17142173 | Msa0979820:intron | 45.0% | |
| GAAGCGTGAAGAATGCTTTG+GGG | - | chr6_4:17142410-17142429 | Msa0979820:intron | 45.0% | |
| TGGGGCCATATAATGATACG+GGG | - | chr6_4:17142428-17142447 | Msa0979820:intron | 45.0% | |
| ATTCTGACTGCAGCAAATCG+GGG | - | chr6_4:17142673-17142692 | Msa0979820:intron | 45.0% | |
| !! | TGCTATTTCAAAGCTGGAGG+AGG | - | chr6_4:17142771-17142790 | Msa0979820:intron | 45.0% |
| !! | CAAAGAGCGTCATGCTTGTT+GGG | + | chr6_4:17142811-17142830 | None:intergenic | 45.0% |
| TTTAAACCCAGATGTGGACG+AGG | - | chr6_4:17142864-17142883 | Msa0979820:intron | 45.0% | |
| TTGCGGTAGAGTTCGTTTGA+AGG | + | chr6_4:17143041-17143060 | None:intergenic | 45.0% | |
| CGAACTCTACCGCAAATCAT+TGG | - | chr6_4:17143046-17143065 | Msa0979820:intron | 45.0% | |
| CTACCGCAAATCATTGGAAG+TGG | - | chr6_4:17143052-17143071 | Msa0979820:intron | 45.0% | |
| CAGCCACTTCCAATGATTTG+CGG | + | chr6_4:17143058-17143077 | None:intergenic | 45.0% | |
| ATCATTGGAAGTGGCTGCTA+AGG | - | chr6_4:17143061-17143080 | Msa0979820:intron | 45.0% | |
| AGTGGCTGCTAAGGTATGTT+CGG | - | chr6_4:17143070-17143089 | Msa0979820:intron | 45.0% | |
| CCCTTATTGAAGGAGTTCAC+TGG | - | chr6_4:17143260-17143279 | Msa0979820:intron | 45.0% | |
| ! | CTGGTGTTTCCTTTTCAACG+AGG | - | chr6_4:17143399-17143418 | Msa0979820:CDS | 45.0% |
| GGTACATGTTCGATTAGACC+GGG | - | chr6_4:17143420-17143439 | Msa0979820:CDS | 45.0% | |
| ATATGTCACCCATTGTGCTG+TGG | - | chr6_4:17143478-17143497 | Msa0979820:intron | 45.0% | |
| CTTTGCAAACCACAGCACAA+TGG | + | chr6_4:17143490-17143509 | None:intergenic | 45.0% | |
| TTGCACAGTTCTTGTGCAAC+AGG | - | chr6_4:17143648-17143667 | Msa0979820:intron | 45.0% | |
| TGCACAGTTCTTGTGCAACA+GGG | - | chr6_4:17143649-17143668 | Msa0979820:intron | 45.0% | |
| TTCCTAGTTCCTACCCATGT+CGG | - | chr6_4:17143678-17143697 | Msa0979820:intron | 45.0% | |
| ! | GTTTTTCATCCGACATGGGT+AGG | + | chr6_4:17143690-17143709 | None:intergenic | 45.0% |
| ! | ACGGGTTTTTCATCCGACAT+GGG | + | chr6_4:17143694-17143713 | None:intergenic | 45.0% |
| TTGTAGTTTGGTCTCTTGGG+AGG | - | chr6_4:17144009-17144028 | Msa0979820:intron | 45.0% | |
| TGTAGTTTGGTCTCTTGGGA+GGG | - | chr6_4:17144010-17144029 | Msa0979820:intron | 45.0% | |
| ATTAGGTCAGCAAGCAGTAG+AGG | - | chr6_4:17144189-17144208 | Msa0979820:intron | 45.0% | |
| ! | TTTGTACCGGCAGAAGAAGA+TGG | + | chr6_4:17144223-17144242 | None:intergenic | 45.0% |
| ATCTTCTTCTGCCGGTACAA+AGG | - | chr6_4:17144222-17144241 | Msa0979820:intron | 45.0% | |
| GTGTATGCAATCAGAGGTCT+TGG | + | chr6_4:17144449-17144468 | None:intergenic | 45.0% | |
| ! | GGTTCTGTCTGGTTTCTTGT+TGG | - | chr6_4:17144790-17144809 | Msa0979820:intron | 45.0% |
| CATACTTGGATGGGTAATCC+TGG | - | chr6_4:17144920-17144939 | Msa0979820:intron | 45.0% | |
| ATGTAACAATGCCAACAGCC+AGG | + | chr6_4:17144941-17144960 | None:intergenic | 45.0% | |
| TGGCTGTTGGCATTGTTACA+TGG | - | chr6_4:17144940-17144959 | Msa0979820:intron | 45.0% | |
| GGCTGTTGGCATTGTTACAT+GGG | - | chr6_4:17144941-17144960 | Msa0979820:intron | 45.0% | |
| TGTTGGCATTGTTACATGGG+TGG | - | chr6_4:17144944-17144963 | Msa0979820:intron | 45.0% | |
| GTTGGCATTGTTACATGGGT+GGG | - | chr6_4:17144945-17144964 | Msa0979820:intron | 45.0% | |
| GAATGGTGCTTGGATGTAGA+AGG | - | chr6_4:17145189-17145208 | Msa0979820:intron | 45.0% | |
| ATGGTGCTTGGATGTAGAAG+GGG | - | chr6_4:17145191-17145210 | Msa0979820:intron | 45.0% | |
| !! | AAGAAAAATAAAAAAAAAAA+GGG | + | chr6_4:17140994-17141013 | None:intergenic | 5.0% |
| !! | AAAGAAAAATAAAAAAAAAA+AGG | + | chr6_4:17140995-17141014 | None:intergenic | 5.0% |
| ! | ATCAGCATCGAGAGGGTTCT+TGG | + | chr6_4:17140954-17140973 | None:intergenic | 50.0% |
| ! | GACTGACATCAGCATCGAGA+GGG | + | chr6_4:17140961-17140980 | None:intergenic | 50.0% |
| ! | AGACTGACATCAGCATCGAG+AGG | + | chr6_4:17140962-17140981 | None:intergenic | 50.0% |
| CAGAGGAGTTGTTGAGCAGT+AGG | - | chr6_4:17141915-17141934 | Msa0979820:intron | 50.0% | |
| TTCTGACTGCAGCAAATCGG+GGG | - | chr6_4:17142674-17142693 | Msa0979820:intron | 50.0% | |
| !! | CCAAAGAGCGTCATGCTTGT+TGG | + | chr6_4:17142812-17142831 | None:intergenic | 50.0% |
| CCAACAAGCATGACGCTCTT+TGG | - | chr6_4:17142809-17142828 | Msa0979820:intron | 50.0% | |
| !! | GTGAAGTGAGAGCATTTCCC+AGG | + | chr6_4:17142837-17142856 | None:intergenic | 50.0% |
| GGGAAATGCTCTCACTTCAC+AGG | - | chr6_4:17142837-17142856 | Msa0979820:intron | 50.0% | |
| CTTTAGCCTCGTCCACATCT+GGG | + | chr6_4:17142873-17142892 | None:intergenic | 50.0% | |
| ACTTTAGCCTCGTCCACATC+TGG | + | chr6_4:17142874-17142893 | None:intergenic | 50.0% | |
| ATCCGACATGGGTAGGAACT+AGG | + | chr6_4:17143683-17143702 | None:intergenic | 50.0% | |
| ! | CACGGGTTTTTCATCCGACA+TGG | + | chr6_4:17143695-17143714 | None:intergenic | 50.0% |
| TCTGACTGCAGCAAATCGGG+GGG | - | chr6_4:17142675-17142694 | Msa0979820:intron | 55.0% | |
| !! | CATGACGCTCTTTGGTGCCT+GGG | - | chr6_4:17142817-17142836 | Msa0979820:intron | 55.0% |
| GCTGGTCCATCTTCTTCTGC+CGG | - | chr6_4:17144214-17144233 | Msa0979820:intron | 55.0% | |
| GGATGGGTAATCCTGGCTGT+TGG | - | chr6_4:17144927-17144946 | Msa0979820:intron | 55.0% | |
| TTCGCTTATCGTGGAGCTGG+AGG | + | chr6_4:17145002-17145021 | None:intergenic | 55.0% | |
| AGCTTCGCTTATCGTGGAGC+TGG | + | chr6_4:17145005-17145024 | None:intergenic | 55.0% | |
| !! | GCATGACGCTCTTTGGTGCC+TGG | - | chr6_4:17142816-17142835 | Msa0979820:intron | 60.0% |
| CAGCAAGCAGTAGAGGCAGC+TGG | - | chr6_4:17144196-17144215 | Msa0979820:intron | 60.0% | |
| TATCGTGGAGCTGGAGGAGG+TGG | + | chr6_4:17144996-17145015 | None:intergenic | 60.0% | |
| GCTTATCGTGGAGCTGGAGG+AGG | + | chr6_4:17144999-17145018 | None:intergenic | 60.0% | |
| !! | GAAGGGGCTAGTCCTCGCAA+TGG | - | chr6_4:17145207-17145226 | Msa0979820:intron | 60.0% |
| !! | CTGGAGGAGGTGGTGGTGGT+AGG | + | chr6_4:17144986-17145005 | None:intergenic | 65.0% |
| ! | GGAGCTGGAGGAGGTGGTGG+TGG | + | chr6_4:17144990-17145009 | None:intergenic | 70.0% |
| CGTGGAGCTGGAGGAGGTGG+TGG | + | chr6_4:17144993-17145012 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 17140814 | 17145405 | 17140814 | ID=Msa0979820;Name=Msa0979820 |
| chr6_4 | mRNA | 17140814 | 17145405 | 17140814 | ID=Msa0979820-mRNA-1;Parent=Msa0979820;Name=Msa0979820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=61|1|1|1|1|1|6|389|206 |
| chr6_4 | exon | 17140814 | 17141337 | 17140814 | ID=Msa0979820-mRNA-1:exon:5444;Parent=Msa0979820-mRNA-1 |
| chr6_4 | exon | 17141976 | 17142065 | 17141976 | ID=Msa0979820-mRNA-1:exon:5443;Parent=Msa0979820-mRNA-1 |
| chr6_4 | exon | 17143137 | 17143184 | 17143137 | ID=Msa0979820-mRNA-1:exon:5442;Parent=Msa0979820-mRNA-1 |
| chr6_4 | exon | 17143280 | 17143449 | 17143280 | ID=Msa0979820-mRNA-1:exon:5441;Parent=Msa0979820-mRNA-1 |
| chr6_4 | exon | 17144044 | 17144122 | 17144044 | ID=Msa0979820-mRNA-1:exon:5440;Parent=Msa0979820-mRNA-1 |
| chr6_4 | exon | 17145246 | 17145405 | 17145246 | ID=Msa0979820-mRNA-1:exon:5439;Parent=Msa0979820-mRNA-1 |
| chr6_4 | five_prime_UTR | 17145345 | 17145405 | 17145345 | ID=Msa0979820-mRNA-1:five_prime_utr;Parent=Msa0979820-mRNA-1 |
| chr6_4 | CDS | 17145246 | 17145344 | 17145246 | ID=Msa0979820-mRNA-1:cds;Parent=Msa0979820-mRNA-1 |
| chr6_4 | CDS | 17144044 | 17144122 | 17144044 | ID=Msa0979820-mRNA-1:cds;Parent=Msa0979820-mRNA-1 |
| chr6_4 | CDS | 17143280 | 17143449 | 17143280 | ID=Msa0979820-mRNA-1:cds;Parent=Msa0979820-mRNA-1 |
| chr6_4 | CDS | 17143137 | 17143184 | 17143137 | ID=Msa0979820-mRNA-1:cds;Parent=Msa0979820-mRNA-1 |
| chr6_4 | CDS | 17141976 | 17142065 | 17141976 | ID=Msa0979820-mRNA-1:cds;Parent=Msa0979820-mRNA-1 |
| chr6_4 | CDS | 17141203 | 17141337 | 17141203 | ID=Msa0979820-mRNA-1:cds;Parent=Msa0979820-mRNA-1 |
| chr6_4 | three_prime_UTR | 17140814 | 17141202 | 17140814 | ID=Msa0979820-mRNA-1:three_prime_utr;Parent=Msa0979820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
