Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943180 | XP_013451444.1 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 1.54e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943180 | sp|P92792|TOM20_SOLTU | 74.611 | 193 | 48 | 1 | 5 | 197 | 4 | 195 | 1.30e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0098210 | Msa0943180 | 0.816047 | 6.761317e-52 | -8.615850e-47 |
| Msa0610000 | Msa0943180 | 0.819798 | 9.609908e-53 | -8.615850e-47 |
| Msa0650370 | Msa0943180 | 0.827531 | 1.486100e-54 | -8.615850e-47 |
| Msa0136400 | Msa0943180 | 0.808059 | 3.730576e-50 | -8.615850e-47 |
| Msa0220950 | Msa0943180 | 0.864008 | 1.656307e-64 | -8.615850e-47 |
| Msa0337750 | Msa0943180 | 0.806319 | 8.713049e-50 | -8.615850e-47 |
| Msa0485220 | Msa0943180 | 0.803015 | 4.265362e-49 | -8.615850e-47 |
| Msa0528750 | Msa0943180 | 0.830792 | 2.405791e-55 | -8.615850e-47 |
| Msa0528820 | Msa0943180 | 0.824727 | 6.899137e-54 | -8.615850e-47 |
| Msa0877540 | Msa0943180 | 0.901153 | 3.573527e-78 | -8.615850e-47 |
| Msa0943180 | Msa0979820 | 0.938767 | 3.898266e-99 | -8.615850e-47 |
| Msa0943180 | Msa1037080 | 0.811403 | 7.125878e-51 | -8.615850e-47 |
| Msa0943180 | Msa1116940 | 0.810466 | 1.136453e-50 | -8.615850e-47 |
| Msa0943180 | Msa1213850 | 0.804177 | 2.448072e-49 | -8.615850e-47 |
| Msa0943180 | Msa1235950 | 0.811458 | 6.931116e-51 | -8.615850e-47 |
| Msa0943180 | Msa1235980 | 0.816452 | 5.490842e-52 | -8.615850e-47 |
| Msa0943180 | Msa1344160 | 0.820598 | 6.303117e-53 | -8.615850e-47 |
| Msa0943180 | Msa1344190 | 0.823218 | 1.559459e-53 | -8.615850e-47 |
| Msa0943180 | Msa1433910 | 0.867083 | 1.776839e-65 | -8.615850e-47 |
| Msa0943180 | Msa1453530 | 0.823412 | 1.404965e-53 | -8.615850e-47 |
| Msa0943180 | Msa1456160 | 0.821426 | 4.062491e-53 | -8.615850e-47 |
| Msa0943180 | Msa1465700 | 0.835684 | 1.454240e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943180 | MtrunA17_Chr6g0459751 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 1.41e-150 | 416 |
| Msa0943180 | MtrunA17_Chr3g0122551 | 58.416 | 202 | 84 | 0 | 1 | 202 | 1 | 202 | 6.27e-80 | 237 |
| Msa0943180 | MtrunA17_Chr6g0467501 | 40.000 | 200 | 81 | 2 | 1 | 166 | 1 | 195 | 8.10e-33 | 124 |
| Msa0943180 | MtrunA17_Chr6g0455921 | 42.767 | 159 | 67 | 3 | 21 | 163 | 8 | 158 | 3.59e-27 | 101 |
| Msa0943180 | MtrunA17_Chr6g0453351 | 36.628 | 172 | 94 | 4 | 7 | 167 | 6 | 173 | 2.05e-25 | 99.0 |
| Msa0943180 | MtrunA17_Chr7g0262471 | 36.364 | 176 | 97 | 3 | 1 | 162 | 1 | 175 | 1.26e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943180 | AT3G27080.1 | 59.701 | 201 | 75 | 2 | 5 | 202 | 4 | 201 | 2.79e-81 | 241 |
| Msa0943180 | AT1G27390.1 | 54.327 | 208 | 88 | 1 | 1 | 201 | 1 | 208 | 6.36e-81 | 240 |
| Msa0943180 | AT5G40930.1 | 57.071 | 198 | 70 | 4 | 1 | 198 | 1 | 183 | 5.95e-71 | 214 |
| Msa0943180 | AT3G27070.1 | 51.042 | 192 | 83 | 2 | 8 | 194 | 1 | 186 | 3.25e-60 | 187 |
| Msa0943180 | AT5G40930.2 | 63.768 | 138 | 47 | 2 | 1 | 138 | 1 | 135 | 9.17e-55 | 172 |
| Msa0943180 | AT1G27390.2 | 53.289 | 152 | 64 | 1 | 57 | 201 | 1 | 152 | 5.86e-53 | 167 |
| Msa0943180 | AT3G27070.2 | 47.482 | 139 | 62 | 2 | 61 | 194 | 114 | 246 | 4.10e-36 | 127 |
Find 81 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTGAGTTTCTAGGGTTT+TGG | 0.198070 | 6_3:+18559891 | None:intergenic |
| TTATGTTTAAGCCTAAATTT+TGG | 0.268925 | 6_3:-18555361 | Msa0943180:three_prime_UTR |
| TCTCAACAAAGCCAAAATTT+AGG | 0.274342 | 6_3:+18555350 | None:intergenic |
| CATACGATGAATAGGCTAAA+TGG | 0.303989 | 6_3:+18555609 | None:intergenic |
| CCAACAAGCATGACGCTCTT+TGG | 0.320617 | 6_3:-18557919 | Msa0943180:CDS |
| ACTTTAGCCTCGTCCACATC+TGG | 0.325905 | 6_3:+18557857 | None:intergenic |
| AGTGAATCAGAAATTTCATT+TGG | 0.336445 | 6_3:+18555512 | None:intergenic |
| TATTCCGTTCAATACTTGAT+TGG | 0.351775 | 6_3:+18555399 | None:intergenic |
| TCCATGGAATCTGAGTTTCT+AGG | 0.353221 | 6_3:+18559884 | None:intergenic |
| ATCAGCATCGAGAGGGTTCT+TGG | 0.367687 | 6_3:+18559790 | None:intergenic |
| TGGCTGTTGGCATTGTTACA+TGG | 0.380557 | 6_3:-18555793 | Msa0943180:CDS |
| CAAAGAGCGTCATGCTTGTT+GGG | 0.385130 | 6_3:+18557920 | None:intergenic |
| TATTTGATTTGATACATTGC+TGG | 0.394585 | 6_3:-18555709 | Msa0943180:three_prime_UTR |
| CCAAAGAGCGTCATGCTTGT+TGG | 0.403594 | 6_3:+18557919 | None:intergenic |
| GAAATACATAAGCATGGATT+AGG | 0.408868 | 6_3:-18556553 | Msa0943180:CDS |
| GAATGGTGCTTGGATGTAGA+AGG | 0.409752 | 6_3:-18555545 | Msa0943180:three_prime_UTR |
| TAAACTTCCATACGATGAAT+AGG | 0.416138 | 6_3:+18555601 | None:intergenic |
| CTGGAGGAGGTGGTGGTGGT+AGG | 0.421770 | 6_3:+18555750 | None:intergenic |
| GCATGACGCTCTTTGGTGCC+TGG | 0.428053 | 6_3:-18557912 | Msa0943180:CDS |
| CGTGGAGCTGGAGGAGGTGG+TGG | 0.435306 | 6_3:+18555743 | None:intergenic |
| CGAACTCTACCGCAAATCAT+TGG | 0.437270 | 6_3:-18557682 | Msa0943180:CDS |
| CCATGGAATCTGAGTTTCTA+GGG | 0.438373 | 6_3:+18559885 | None:intergenic |
| GGAGCTGGAGGAGGTGGTGG+TGG | 0.438402 | 6_3:+18555746 | None:intergenic |
| CAATACTTGATTGGTAACTT+TGG | 0.446493 | 6_3:+18555408 | None:intergenic |
| CTCTGCAGAATTTGACAAGA+TGG | 0.446686 | 6_3:-18558638 | Msa0943180:intron |
| TTCAGATGCTATTTCAAAGC+TGG | 0.452976 | 6_3:-18557963 | Msa0943180:intron |
| GCTGGTCCATCTTCTTCTGC+TGG | 0.453164 | 6_3:-18556511 | Msa0943180:CDS |
| GTTGGCATTGTTACATGGGT+GGG | 0.459171 | 6_3:-18555788 | Msa0943180:CDS |
| GGCTGTTGGCATTGTTACAT+GGG | 0.462217 | 6_3:-18555792 | Msa0943180:CDS |
| TTCGTTCTGTTGCAAATCCA+TGG | 0.462675 | 6_3:+18559868 | None:intergenic |
| AGGGTCATCTTCTTTGACTC+GGG | 0.469648 | 6_3:+18558576 | None:intergenic |
| CAGCCACTTCCAATGATTTG+CGG | 0.472358 | 6_3:+18557673 | None:intergenic |
| CCCTAGAAACTCAGATTCCA+TGG | 0.472505 | 6_3:-18559885 | Msa0943180:exon |
| CATGACGCTCTTTGGTGCCT+GGG | 0.480309 | 6_3:-18557911 | Msa0943180:CDS |
| TTGCGGTAGAGTTCGTTTGA+AGG | 0.482619 | 6_3:+18557690 | None:intergenic |
| AACGGAATAATTTGTTGCCA+AGG | 0.489129 | 6_3:-18555385 | Msa0943180:three_prime_UTR |
| ATCATTGGAAGTGGCTGCTA+AGG | 0.490666 | 6_3:-18557667 | Msa0943180:intron |
| AGCTTCGCTTATCGTGGAGC+TGG | 0.491164 | 6_3:+18555731 | None:intergenic |
| TGTATTTCTACATGTAGCTC+AGG | 0.497343 | 6_3:+18556568 | None:intergenic |
| CATTTAGCCTATTCATCGTA+TGG | 0.497941 | 6_3:-18555608 | Msa0943180:three_prime_UTR |
| TGCTATTTCAAAGCTGGAGG+AGG | 0.506923 | 6_3:-18557957 | Msa0943180:CDS |
| TGTTGGCATTGTTACATGGG+TGG | 0.507942 | 6_3:-18555789 | Msa0943180:CDS |
| GAATCAGAAATTTCATTTGG+AGG | 0.508073 | 6_3:+18555515 | None:intergenic |
| TATCGTGGAGCTGGAGGAGG+TGG | 0.508794 | 6_3:+18555740 | None:intergenic |
| TTAGGCTTAAACATAAACCT+TGG | 0.509913 | 6_3:+18555368 | None:intergenic |
| ATCTTCTTCTGCTGGTACAA+AGG | 0.513193 | 6_3:-18556503 | Msa0943180:intron |
| TCTGCAGAATTTGACAAGAT+GGG | 0.521349 | 6_3:-18558637 | Msa0943180:intron |
| CATACTTGGATGGGTAATCC+TGG | 0.525797 | 6_3:-18555813 | Msa0943180:CDS |
| CTTTAGCCTCGTCCACATCT+GGG | 0.526481 | 6_3:+18557858 | None:intergenic |
| AAGGGTCATCTTCTTTGACT+CGG | 0.533813 | 6_3:+18558575 | None:intergenic |
| GCTTATCGTGGAGCTGGAGG+AGG | 0.534256 | 6_3:+18555737 | None:intergenic |
| GTGAAGTGAGAGCATTTCCC+AGG | 0.534970 | 6_3:+18557894 | None:intergenic |
| TGAAGTATGACATACTTGGA+TGG | 0.544169 | 6_3:-18555823 | Msa0943180:CDS |
| GGGAAATGCTCTCACTTCAC+AGG | 0.545457 | 6_3:-18557891 | Msa0943180:CDS |
| CTACCGCAAATCATTGGAAG+TGG | 0.545747 | 6_3:-18557676 | Msa0943180:CDS |
| TTTGTACCAGCAGAAGAAGA+TGG | 0.553639 | 6_3:+18556505 | None:intergenic |
| CAGCAAGCAGTAGAGGCAGC+TGG | 0.555623 | 6_3:-18556529 | Msa0943180:CDS |
| TTCGCTTATCGTGGAGCTGG+AGG | 0.566194 | 6_3:+18555734 | None:intergenic |
| GAAGTATGACATACTTGGAT+GGG | 0.568545 | 6_3:-18555822 | Msa0943180:CDS |
| ATGTAACAATGCCAACAGCC+AGG | 0.573417 | 6_3:+18555795 | None:intergenic |
| ATTAGGTCAGCAAGCAGTAG+AGG | 0.574544 | 6_3:-18556536 | Msa0943180:CDS |
| TATATACAAAGACATGAGCT+AGG | 0.575618 | 6_3:+18555440 | None:intergenic |
| AGATGCTATTTCAAAGCTGG+AGG | 0.576638 | 6_3:-18557960 | Msa0943180:CDS |
| GGATGGGTAATCCTGGCTGT+TGG | 0.576660 | 6_3:-18555806 | Msa0943180:CDS |
| GAGTCAAAGAAGATGACCCT+TGG | 0.580952 | 6_3:-18558573 | Msa0943180:intron |
| CAGAATTTGACAAGATGGGG+TGG | 0.587171 | 6_3:-18558633 | Msa0943180:CDS |
| TTTAAACCCAGATGTGGACG+AGG | 0.591013 | 6_3:-18557864 | Msa0943180:CDS |
| TCAAATAGCTTCGCTTATCG+TGG | 0.591851 | 6_3:+18555725 | None:intergenic |
| CATGTAGAAATACATAAGCA+TGG | 0.592725 | 6_3:-18556559 | Msa0943180:CDS |
| CTTTCAACAAGCTGTTGATG+AGG | 0.593601 | 6_3:-18557810 | Msa0943180:intron |
| CTGCAGAATTTGACAAGATG+GGG | 0.603692 | 6_3:-18558636 | Msa0943180:intron |
| CTTGGTGTATTCAGCTTCAG+CGG | 0.606207 | 6_3:+18559808 | None:intergenic |
| GACTGACATCAGCATCGAGA+GGG | 0.609421 | 6_3:+18559783 | None:intergenic |
| GTTACCAATCAAGTATTGAA+CGG | 0.614446 | 6_3:-18555403 | Msa0943180:three_prime_UTR |
| TTGAGTTGAGTAGCTATGAA+TGG | 0.618091 | 6_3:-18555562 | Msa0943180:three_prime_UTR |
| GATATGAAGTATGACATACT+TGG | 0.620697 | 6_3:-18555827 | Msa0943180:CDS |
| AATGGTGCTTGGATGTAGAA+GGG | 0.633906 | 6_3:-18555544 | Msa0943180:three_prime_UTR |
| GAGTAGCTATGAATGGTGCT+TGG | 0.640579 | 6_3:-18555555 | Msa0943180:three_prime_UTR |
| GGCTAAAGTTTACTTTGACA+AGG | 0.646740 | 6_3:-18557843 | Msa0943180:CDS |
| ATGGTGCTTGGATGTAGAAG+GGG | 0.694156 | 6_3:-18555543 | Msa0943180:three_prime_UTR |
| AGACTGACATCAGCATCGAG+AGG | 0.704805 | 6_3:+18559782 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATGAAAAAAAAG+GGG | + | chr6_3:18555535-18555554 | None:intergenic | 10.0% |
| !!! | TTATTATGTTTCATTTTAAA+TGG | - | chr6_3:18558144-18558163 | Msa0943180:intron | 10.0% |
| !!! | GAAATTTTGTGTATAATTTT+TGG | - | chr6_3:18555792-18555811 | Msa0943180:CDS | 15.0% |
| !! | AAACTTTATTGTATAATCTT+TGG | - | chr6_3:18556074-18556093 | Msa0943180:intron | 15.0% |
| !!! | TATAATTTTTGGAATTCTTT+TGG | - | chr6_3:18556217-18556236 | Msa0943180:intron | 15.0% |
| !!! | TATAGTTTTTTGAATGTTTT+TGG | - | chr6_3:18556441-18556460 | Msa0943180:intron | 15.0% |
| !! | AACAAAATAGTAAAAACAAA+AGG | + | chr6_3:18556842-18556861 | None:intergenic | 15.0% |
| !!! | TTACATGTGTTTTTATTAAA+CGG | - | chr6_3:18556870-18556889 | Msa0943180:intron | 15.0% |
| !!! | TTTTTACTACTATAAATCTA+TGG | - | chr6_3:18557913-18557932 | Msa0943180:CDS | 15.0% |
| !!! | TAAAAGAAATAAGGTTTTAA+AGG | + | chr6_3:18558347-18558366 | None:intergenic | 15.0% |
| !!! | TGCATATTTTAAAAGAAATA+AGG | + | chr6_3:18558356-18558375 | None:intergenic | 15.0% |
| !!! | ATATAGATGAATTTTTGTGT+TGG | - | chr6_3:18555709-18555728 | Msa0943180:three_prime_UTR | 20.0% |
| !!! | GAAGTTTTGTTTGTAATTTT+TGG | - | chr6_3:18555731-18555750 | Msa0943180:exon | 20.0% |
| !!! | GTAATTTTTGGAATTCTTTT+TGG | - | chr6_3:18555743-18555762 | Msa0943180:CDS | 20.0% |
| !!! | CAAAATTTGTGTATAGTTTT+TGG | - | chr6_3:18555841-18555860 | Msa0943180:CDS | 20.0% |
| !!! | GAAATTTTGTGTATAATGTT+TGG | - | chr6_3:18555908-18555927 | Msa0943180:intron | 20.0% |
| !!! | TGTATAATTTTTCGTACATA+TGG | - | chr6_3:18556035-18556054 | Msa0943180:intron | 20.0% |
| !! | TGTATAATCTTTGGTATATA+TGG | - | chr6_3:18556083-18556102 | Msa0943180:intron | 20.0% |
| !!! | ATATTTGTGTTGCAAATTTT+TGG | - | chr6_3:18556157-18556176 | Msa0943180:intron | 20.0% |
| !!! | TTAAAATTTTGAGATGGTTT+TGG | - | chr6_3:18556280-18556299 | Msa0943180:intron | 20.0% |
| !!! | ATAATTTCTGGAAATTTTGT+TGG | - | chr6_3:18556338-18556357 | Msa0943180:intron | 20.0% |
| !!! | TGGAATTTGTGTATAATTTT+TGG | - | chr6_3:18556546-18556565 | Msa0943180:CDS | 20.0% |
| !!! | GAAATTTTGTGTATAACTTT+TGG | - | chr6_3:18556604-18556623 | Msa0943180:intron | 20.0% |
| !!! | TTAGCTGTGTTTTTATTAAA+TGG | - | chr6_3:18556787-18556806 | Msa0943180:intron | 20.0% |
| !!! | GAGTGTTTTTTGTTTTATAT+AGG | - | chr6_3:18557567-18557586 | Msa0943180:intron | 20.0% |
| !!! | TTTTTTATCATATTGTCATG+CGG | - | chr6_3:18557658-18557677 | Msa0943180:intron | 20.0% |
| !!! | TTTTCCATCTGTTTTATTTA+TGG | - | chr6_3:18557693-18557712 | Msa0943180:CDS | 20.0% |
| !! | AAAACAAAGACATAAAAACA+GGG | + | chr6_3:18558252-18558271 | None:intergenic | 20.0% |
| !! | AAAAACAAAGACATAAAAAC+AGG | + | chr6_3:18558253-18558272 | None:intergenic | 20.0% |
| !!! | TTTCCTTTATACCTTTTTTT+AGG | - | chr6_3:18558689-18558708 | Msa0943180:intron | 20.0% |
| !! | AACAAAAATATATACTACGA+GGG | + | chr6_3:18558924-18558943 | None:intergenic | 20.0% |
| !! | TGGAAATAACCAAATAAATT+AGG | + | chr6_3:18559410-18559429 | None:intergenic | 20.0% |
| !! | AAAAACAAAATATTAAGTGG+CGG | + | chr6_3:18559625-18559644 | None:intergenic | 20.0% |
| !! | GTCAAAAACAAAATATTAAG+TGG | + | chr6_3:18559628-18559647 | None:intergenic | 20.0% |
| !!! | TTATGTTTAAGCCTAAATTT+TGG | - | chr6_3:18559921-18559940 | Msa0943180:five_prime_UTR | 20.0% |
| ! | TGAAAAAAAAGGGGAAAAAT+TGG | + | chr6_3:18555526-18555545 | None:intergenic | 25.0% |
| ! | AGATTTCAACTTTCTTATGA+TGG | - | chr6_3:18555588-18555607 | Msa0943180:three_prime_UTR | 25.0% |
| ! | GATTTCAACTTTCTTATGAT+GGG | - | chr6_3:18555589-18555608 | Msa0943180:three_prime_UTR | 25.0% |
| !!! | TTTGATTGATTTTGTGTCTA+TGG | - | chr6_3:18555627-18555646 | Msa0943180:three_prime_UTR | 25.0% |
| !!! | TTGATTGATTTTGTGTCTAT+GGG | - | chr6_3:18555628-18555647 | Msa0943180:three_prime_UTR | 25.0% |
| !!! | ACAAAAACTCAGATTTTTTC+AGG | + | chr6_3:18555676-18555695 | None:intergenic | 25.0% |
| !!! | GTATAATTTTTGGTACACAA+AGG | - | chr6_3:18555802-18555821 | Msa0943180:CDS | 25.0% |
| !!! | TATAGTTTTTGGTGTTGTAT+TGG | - | chr6_3:18555852-18555871 | Msa0943180:CDS | 25.0% |
| !! | GAAATTTTGTGCATAATGTT+TGG | - | chr6_3:18555874-18555893 | Msa0943180:intron | 25.0% |
| !! | ATAATGTTTGGTAGTTGTAT+TGG | - | chr6_3:18555886-18555905 | Msa0943180:intron | 25.0% |
| ! | TGTATAATTCTTGGAACATA+TGG | - | chr6_3:18556130-18556149 | Msa0943180:intron | 25.0% |
| !! | GCAGATTTGTGTATAATTTT+TGG | - | chr6_3:18556206-18556225 | Msa0943180:intron | 25.0% |
| !!! | TTCTGCTTAAAATTTTGAGA+TGG | - | chr6_3:18556274-18556293 | Msa0943180:intron | 25.0% |
| !!! | TGATTTTTGGAATTTGTTTC+TGG | - | chr6_3:18556500-18556519 | Msa0943180:intron | 25.0% |
| ! | ATATAAATGAGTTGTTGTGT+TGG | - | chr6_3:18556526-18556545 | Msa0943180:CDS | 25.0% |
| !! | TGGAAATTCTTTTAGACATA+TGG | - | chr6_3:18556566-18556585 | Msa0943180:CDS | 25.0% |
| ! | ATTGTAAAAACAAAGAGACT+AGG | + | chr6_3:18556753-18556772 | None:intergenic | 25.0% |
| ! | TAGTAAAAACAAAAGGACAA+GGG | + | chr6_3:18556835-18556854 | None:intergenic | 25.0% |
| ! | ATAGTAAAAACAAAAGGACA+AGG | + | chr6_3:18556836-18556855 | None:intergenic | 25.0% |
| !! | AACAGAAATAACAGTGTTTT+TGG | + | chr6_3:18557088-18557107 | None:intergenic | 25.0% |
| ! | ACTTCCATAAATAAAACAGA+TGG | + | chr6_3:18557700-18557719 | None:intergenic | 25.0% |
| !!! | AATGACAATCGTAATTTGTT+TGG | - | chr6_3:18557744-18557763 | Msa0943180:intron | 25.0% |
| !! | TATTGATTATCCTTATAAGC+TGG | + | chr6_3:18557857-18557876 | None:intergenic | 25.0% |
| ! | ATAAGTGTTCCTTGAAAATA+AGG | - | chr6_3:18557874-18557893 | Msa0943180:CDS | 25.0% |
| ! | TAAATCTATGGTCATAGAAA+AGG | - | chr6_3:18557925-18557944 | Msa0943180:CDS | 25.0% |
| ! | AAACAAAGACATAAAAACAG+GGG | + | chr6_3:18558251-18558270 | None:intergenic | 25.0% |
| !!! | GAAATAAGGTTTTAAAGGTT+GGG | + | chr6_3:18558342-18558361 | None:intergenic | 25.0% |
| !!! | AGAAATAAGGTTTTAAAGGT+TGG | + | chr6_3:18558343-18558362 | None:intergenic | 25.0% |
| ! | AAGATTCACAATAGAACTAA+AGG | + | chr6_3:18558617-18558636 | None:intergenic | 25.0% |
| !! | ACTTTGATATCGTTTTCTAT+TGG | - | chr6_3:18558843-18558862 | Msa0943180:intron | 25.0% |
| ! | ACAAAAATATATACTACGAG+GGG | + | chr6_3:18558923-18558942 | None:intergenic | 25.0% |
| ! | CAACAAAAATATATACTACG+AGG | + | chr6_3:18558925-18558944 | None:intergenic | 25.0% |
| !!! | TAGAACAGTTTGTTGTTTTT+CGG | - | chr6_3:18559056-18559075 | Msa0943180:intron | 25.0% |
| ! | ACTCTATCTTGACAATATTA+CGG | + | chr6_3:18559117-18559136 | None:intergenic | 25.0% |
| ! | CGGAAAAAAATGCATTTATA+GGG | + | chr6_3:18559264-18559283 | None:intergenic | 25.0% |
| ! | ACGGAAAAAAATGCATTTAT+AGG | + | chr6_3:18559265-18559284 | None:intergenic | 25.0% |
| !! | TCTTCGTTTTATCTTTTCTA+CGG | + | chr6_3:18559284-18559303 | None:intergenic | 25.0% |
| ! | AGAAACTCACCTAATTTATT+TGG | - | chr6_3:18559398-18559417 | Msa0943180:intron | 25.0% |
| !!! | TATTTGATTTGATACATTGC+TGG | - | chr6_3:18559573-18559592 | Msa0943180:intron | 25.0% |
| ! | AGTGAATCAGAAATTTCATT+TGG | + | chr6_3:18559773-18559792 | None:intergenic | 25.0% |
| !! | TATGAATGAGTTTGTTGTGT+TGG | - | chr6_3:18555770-18555789 | Msa0943180:CDS | 30.0% |
| ! | TTTGGTTCATATGCTTATGT+TGG | - | chr6_3:18555926-18555945 | Msa0943180:intron | 30.0% |
| !! | TTTTTGATTAGTTGTTGTGC+TGG | - | chr6_3:18555964-18555983 | Msa0943180:intron | 30.0% |
| TACACAATATCTACACAACT+AGG | + | chr6_3:18556019-18556038 | None:intergenic | 30.0% | |
| GCAAATCTGTGTATAATTCT+TGG | - | chr6_3:18556121-18556140 | Msa0943180:intron | 30.0% | |
| ATAATTCTTGGAACATATGG+AGG | - | chr6_3:18556133-18556152 | Msa0943180:intron | 30.0% | |
| ATATGAATGAGTTGTTGTGT+TGG | - | chr6_3:18556306-18556325 | Msa0943180:intron | 30.0% | |
| ! | GGAAATTTTGTTGGTACATA+TGG | - | chr6_3:18556347-18556366 | Msa0943180:intron | 30.0% |
| ! | TGGAAATTGCGTATAGTTTT+TGG | - | chr6_3:18556384-18556403 | Msa0943180:intron | 30.0% |
| !!! | CATATGGTGAGTTGTTATTT+TGG | - | chr6_3:18556582-18556601 | Msa0943180:intron | 30.0% |
| ATATAGAGAATAAGCACCAA+GGG | + | chr6_3:18556728-18556747 | None:intergenic | 30.0% | |
| AATGGTTCTTGTGTTATGTT+TGG | - | chr6_3:18556805-18556824 | Msa0943180:intron | 30.0% | |
| TATTTCCCCGTATCATTATA+TGG | + | chr6_3:18556990-18557009 | None:intergenic | 30.0% | |
| !! | ATTTTGAGTCAGAATCACTA+AGG | - | chr6_3:18557140-18557159 | Msa0943180:intron | 30.0% |
| AGTCGTTTGATTGTATCTAA+TGG | - | chr6_3:18557173-18557192 | Msa0943180:intron | 30.0% | |
| !!! | GAACATTCGTTTGTTTTTTG+TGG | - | chr6_3:18557274-18557293 | Msa0943180:intron | 30.0% |
| TGGATTTCTCACTTGAAATT+TGG | - | chr6_3:18557294-18557313 | Msa0943180:intron | 30.0% | |
| GTCATTTCTATATTACAGTG+AGG | + | chr6_3:18557730-18557749 | None:intergenic | 30.0% | |
| ! | TGAGAAACCTAACATCTTTT+TGG | - | chr6_3:18557773-18557792 | Msa0943180:intron | 30.0% |
| ! | GAGAAACCTAACATCTTTTT+GGG | - | chr6_3:18557774-18557793 | Msa0943180:intron | 30.0% |
| ! | ATTTTGTGTTCCCTTATTGA+AGG | - | chr6_3:18557804-18557823 | Msa0943180:intron | 30.0% |
| TATAAGCTGGTCATCTTAAA+CGG | + | chr6_3:18557844-18557863 | None:intergenic | 30.0% | |
| ! | TTTAAGATGACCAGCTTATA+AGG | - | chr6_3:18557844-18557863 | Msa0943180:CDS | 30.0% |
| !!! | AACACAAGTCCTTATTTTCA+AGG | + | chr6_3:18557886-18557905 | None:intergenic | 30.0% |
| ATAACGCAATTACAACTACA+TGG | + | chr6_3:18558128-18558147 | None:intergenic | 30.0% | |
| GCAAGCAATTAAGATTAAAG+CGG | - | chr6_3:18558299-18558318 | Msa0943180:intron | 30.0% | |
| TAAAGGTTCAGTTTCTAAAC+AGG | + | chr6_3:18558417-18558436 | None:intergenic | 30.0% | |
| GTAAGGGAACAAAAGAATAA+AGG | + | chr6_3:18558434-18558453 | None:intergenic | 30.0% | |
| AGTAGTCGACATATACAAAA+GGG | + | chr6_3:18558484-18558503 | None:intergenic | 30.0% | |
| AAGTAGTCGACATATACAAA+AGG | + | chr6_3:18558485-18558504 | None:intergenic | 30.0% | |
| !! | TGTATATGTCGACTACTTTT+AGG | - | chr6_3:18558487-18558506 | Msa0943180:intron | 30.0% |
| AGTTCAGCATAAAAGAAAGA+TGG | + | chr6_3:18558518-18558537 | None:intergenic | 30.0% | |
| ! | ATCTTTCTTTTATGCTGAAC+TGG | - | chr6_3:18558517-18558536 | Msa0943180:intron | 30.0% |
| !!! | GTGTTTTGGTTTTTGTAGTT+TGG | - | chr6_3:18558553-18558572 | Msa0943180:intron | 30.0% |
| ! | TTTTTGTAGTTTGGTCTCTT+GGG | - | chr6_3:18558562-18558581 | Msa0943180:intron | 30.0% |
| ! | GAGCCTAAAAAAAGGTATAA+AGG | + | chr6_3:18558695-18558714 | None:intergenic | 30.0% |
| CATGTAGAAATACATAAGCA+TGG | - | chr6_3:18558723-18558742 | Msa0943180:intron | 30.0% | |
| GAAATACATAAGCATGGATT+AGG | - | chr6_3:18558729-18558748 | Msa0943180:intron | 30.0% | |
| CAAAAATATATACTACGAGG+GGG | + | chr6_3:18558922-18558941 | None:intergenic | 30.0% | |
| GTCAAGATAGAGTAGTAATT+AGG | - | chr6_3:18559124-18559143 | Msa0943180:intron | 30.0% | |
| !!! | ATTAGGTGACTTTGTTGTTT+TGG | - | chr6_3:18559141-18559160 | Msa0943180:intron | 30.0% |
| ! | GTTTTATGGTATGAGTTTGT+AGG | - | chr6_3:18559168-18559187 | Msa0943180:intron | 30.0% |
| ACACACAGATACACTAATTA+TGG | + | chr6_3:18559227-18559246 | None:intergenic | 30.0% | |
| AAAACGAAGAACTATTCGTA+AGG | - | chr6_3:18559294-18559313 | Msa0943180:intron | 30.0% | |
| !! | TTTTCTTCTTCTTTTGAGTC+TGG | + | chr6_3:18559430-18559449 | None:intergenic | 30.0% |
| GATATGAAGTATGACATACT+TGG | - | chr6_3:18559455-18559474 | Msa0943180:intron | 30.0% | |
| ! | GACTGTTGTAATGTTTTTCA+AGG | - | chr6_3:18559645-18559664 | Msa0943180:intron | 30.0% |
| TAAACTTCCATACGATGAAT+AGG | + | chr6_3:18559684-18559703 | None:intergenic | 30.0% | |
| GAATCAGAAATTTCATTTGG+AGG | + | chr6_3:18559770-18559789 | None:intergenic | 30.0% | |
| TATATACAAAGACATGAGCT+AGG | + | chr6_3:18559845-18559864 | None:intergenic | 30.0% | |
| ! | CAATACTTGATTGGTAACTT+TGG | + | chr6_3:18559877-18559896 | None:intergenic | 30.0% |
| !! | GTTACCAATCAAGTATTGAA+CGG | - | chr6_3:18559879-18559898 | Msa0943180:exon | 30.0% |
| TATTCCGTTCAATACTTGAT+TGG | + | chr6_3:18559886-18559905 | None:intergenic | 30.0% | |
| TTAGGCTTAAACATAAACCT+TGG | + | chr6_3:18559917-18559936 | None:intergenic | 30.0% | |
| !!! | ATCTGAGTTTCTAGGGTTTT+GGG | + | chr6_3:18555393-18555412 | None:intergenic | 35.0% |
| !!! | AATCTGAGTTTCTAGGGTTT+TGG | + | chr6_3:18555394-18555413 | None:intergenic | 35.0% |
| ! | TGGAATTCTTTTGGTACGTA+TGG | - | chr6_3:18556226-18556245 | Msa0943180:intron | 35.0% |
| TGGAAGTGGTGTATAATTTC+TGG | - | chr6_3:18556326-18556345 | Msa0943180:intron | 35.0% | |
| TTGGTACATATCGATGTTCT+TGG | - | chr6_3:18556403-18556422 | Msa0943180:intron | 35.0% | |
| !!! | AATGTTTTTGGTACGTACAG+AGG | - | chr6_3:18556453-18556472 | Msa0943180:intron | 35.0% |
| TCTGCAGAATTTGACAAGAT+GGG | - | chr6_3:18556645-18556664 | Msa0943180:intron | 35.0% | |
| CATATAGAGAATAAGCACCA+AGG | + | chr6_3:18556729-18556748 | None:intergenic | 35.0% | |
| TGTTTGGACTTGTGTTTAGA+GGG | - | chr6_3:18556904-18556923 | Msa0943180:intron | 35.0% | |
| ATTCTTCACGCTTCTTCTAT+AGG | + | chr6_3:18556958-18556977 | None:intergenic | 35.0% | |
| TTAGGGGCCATATAATGATA+CGG | - | chr6_3:18556980-18556999 | Msa0943180:intron | 35.0% | |
| AACTTAAGATGATATGCTGC+AGG | + | chr6_3:18557032-18557051 | None:intergenic | 35.0% | |
| ATATTCTGACTGCAGCAAAT+CGG | - | chr6_3:18557225-18557244 | Msa0943180:intron | 35.0% | |
| !! | TTCAGATGCTATTTCAAAGC+TGG | - | chr6_3:18557319-18557338 | Msa0943180:intron | 35.0% |
| GGCTAAAGTTTACTTTGACA+AGG | - | chr6_3:18557439-18557458 | Msa0943180:intron | 35.0% | |
| GTACAGTATCATTGAAGTGT+GGG | - | chr6_3:18557494-18557513 | Msa0943180:intron | 35.0% | |
| ! | AGGTATGTTCGGTGATTTAA+TGG | - | chr6_3:18557635-18557654 | Msa0943180:intron | 35.0% |
| GGAACTGAAAATTCAAAACC+CGG | + | chr6_3:18557995-18558014 | None:intergenic | 35.0% | |
| ! | ATATCCAGCTTTGTAAAGCA+TGG | + | chr6_3:18558016-18558035 | None:intergenic | 35.0% |
| TTGCAGATAAGATGTGATTC+TGG | + | chr6_3:18558181-18558200 | None:intergenic | 35.0% | |
| CGATCAACAGATTAGAGTAA+GGG | + | chr6_3:18558450-18558469 | None:intergenic | 35.0% | |
| CCTTACTCTAATCTGTTGAT+CGG | - | chr6_3:18558448-18558467 | Msa0943180:intron | 35.0% | |
| ! | GTCTTTCTCTGTATGTGTTT+TGG | - | chr6_3:18558539-18558558 | Msa0943180:intron | 35.0% |
| ! | GTTTTTGTAGTTTGGTCTCT+TGG | - | chr6_3:18558561-18558580 | Msa0943180:intron | 35.0% |
| AACTAAAGGATGCATGAGAA+TGG | + | chr6_3:18558603-18558622 | None:intergenic | 35.0% | |
| ! | TGTATTTCTACATGTAGCTC+AGG | + | chr6_3:18558717-18558736 | None:intergenic | 35.0% |
| GAACTACTGTTACTAAGTGT+CGG | + | chr6_3:18558967-18558986 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTGGACACGTTTTA+TGG | - | chr6_3:18559154-18559173 | Msa0943180:intron | 35.0% |
| TTGTCAGATCTTGAGATCAA+TGG | - | chr6_3:18559318-18559337 | Msa0943180:intron | 35.0% | |
| TGAAGTATGACATACTTGGA+TGG | - | chr6_3:18559459-18559478 | Msa0943180:intron | 35.0% | |
| GAAGTATGACATACTTGGAT+GGG | - | chr6_3:18559460-18559479 | Msa0943180:intron | 35.0% | |
| CATACGATGAATAGGCTAAA+TGG | + | chr6_3:18559676-18559695 | None:intergenic | 35.0% | |
| CATTTAGCCTATTCATCGTA+TGG | - | chr6_3:18559674-18559693 | Msa0943180:intron | 35.0% | |
| !! | TTGAGTTGAGTAGCTATGAA+TGG | - | chr6_3:18559720-18559739 | Msa0943180:intron | 35.0% |
| !! | AACGGAATAATTTGTTGCCA+AGG | - | chr6_3:18559897-18559916 | Msa0943180:five_prime_UTR | 35.0% |
| CCATGGAATCTGAGTTTCTA+GGG | + | chr6_3:18555400-18555419 | None:intergenic | 40.0% | |
| TCCATGGAATCTGAGTTTCT+AGG | + | chr6_3:18555401-18555420 | None:intergenic | 40.0% | |
| TTCGTTCTGTTGCAAATCCA+TGG | + | chr6_3:18555417-18555436 | None:intergenic | 40.0% | |
| !! | TCTATGGGTGCTTTGTTGTT+AGG | - | chr6_3:18555643-18555662 | Msa0943180:three_prime_UTR | 40.0% |
| ATGAGTTGTTGTGTTGGAAG+TGG | - | chr6_3:18556312-18556331 | Msa0943180:intron | 40.0% | |
| ! | TGGTACATATGGTTGAGTTG+TGG | - | chr6_3:18556358-18556377 | Msa0943180:intron | 40.0% |
| ! | ATATGGTTGAGTTGTGGTGT+TGG | - | chr6_3:18556364-18556383 | Msa0943180:intron | 40.0% |
| ! | TGGAGGTTGTGTGTGATTTT+TGG | - | chr6_3:18556487-18556506 | Msa0943180:intron | 40.0% |
| CTCTGCAGAATTTGACAAGA+TGG | - | chr6_3:18556644-18556663 | Msa0943180:intron | 40.0% | |
| CTGCAGAATTTGACAAGATG+GGG | - | chr6_3:18556646-18556665 | Msa0943180:intron | 40.0% | |
| AAGGGTCATCTTCTTTGACT+CGG | + | chr6_3:18556710-18556729 | None:intergenic | 40.0% | |
| ! | AACGGTTTTTGTGTCGTGTT+TGG | - | chr6_3:18556888-18556907 | Msa0943180:intron | 40.0% |
| GTGTTTGGACTTGTGTTTAG+AGG | - | chr6_3:18556903-18556922 | Msa0943180:intron | 40.0% | |
| GTTTGGACTTGTGTTTAGAG+GGG | - | chr6_3:18556905-18556924 | Msa0943180:intron | 40.0% | |
| ! | AAGAAGCGTGAAGAATGCTT+AGG | - | chr6_3:18556962-18556981 | Msa0943180:intron | 40.0% |
| ! | AGAAGCGTGAAGAATGCTTA+GGG | - | chr6_3:18556963-18556982 | Msa0943180:intron | 40.0% |
| TAGGGGCCATATAATGATAC+GGG | - | chr6_3:18556981-18557000 | Msa0943180:intron | 40.0% | |
| TATTCTGACTGCAGCAAATC+GGG | - | chr6_3:18557226-18557245 | Msa0943180:intron | 40.0% | |
| !! | AGATGCTATTTCAAAGCTGG+AGG | - | chr6_3:18557322-18557341 | Msa0943180:intron | 40.0% |
| ! | GGCATTTTTAAACCCAGATG+TGG | - | chr6_3:18557412-18557431 | Msa0943180:intron | 40.0% |
| CTTTCAACAAGCTGTTGATG+AGG | - | chr6_3:18557472-18557491 | Msa0943180:intron | 40.0% | |
| GGTACAGTATCATTGAAGTG+TGG | - | chr6_3:18557493-18557512 | Msa0943180:intron | 40.0% | |
| ACTCGACCCAAAAAGATGTT+AGG | + | chr6_3:18557783-18557802 | None:intergenic | 40.0% | |
| CCAGTGAACTCCTTCAATAA+GGG | + | chr6_3:18557817-18557836 | None:intergenic | 40.0% | |
| TCCAGTGAACTCCTTCAATA+AGG | + | chr6_3:18557818-18557837 | None:intergenic | 40.0% | |
| GGTCATAGAAAAGGAATGAC+TGG | - | chr6_3:18557934-18557953 | Msa0943180:CDS | 40.0% | |
| GAACATGTACCTCGTTGAAA+AGG | + | chr6_3:18557965-18557984 | None:intergenic | 40.0% | |
| AGGTACATGTTCGATTAGAC+CGG | - | chr6_3:18557973-18557992 | Msa0943180:intron | 40.0% | |
| AGTTCCATGCTTTACAAAGC+TGG | - | chr6_3:18558009-18558028 | Msa0943180:intron | 40.0% | |
| TTTGCAAACCACAGCACAAT+GGG | + | chr6_3:18558043-18558062 | None:intergenic | 40.0% | |
| ! | AAACAGGGGTTTTTCATCCT+AGG | + | chr6_3:18558237-18558256 | None:intergenic | 40.0% |
| ! | GATTTTTCTTCAGCGTAGCA+AGG | + | chr6_3:18558278-18558297 | None:intergenic | 40.0% |
| AAAGGTTGGGACTCTTTAAC+AGG | + | chr6_3:18558329-18558348 | None:intergenic | 40.0% | |
| AAACAGGAAGGCAGATCAAA+AGG | + | chr6_3:18558401-18558420 | None:intergenic | 40.0% | |
| GGTTCAGTTTCTAAACAGGA+AGG | + | chr6_3:18558413-18558432 | None:intergenic | 40.0% | |
| CCGATCAACAGATTAGAGTA+AGG | + | chr6_3:18558451-18558470 | None:intergenic | 40.0% | |
| TAGCTCAGGAGCCTAAAAAA+AGG | + | chr6_3:18558703-18558722 | None:intergenic | 40.0% | |
| TTTGTACCAGCAGAAGAAGA+TGG | + | chr6_3:18558780-18558799 | None:intergenic | 40.0% | |
| ATCTTCTTCTGCTGGTACAA+AGG | - | chr6_3:18558779-18558798 | Msa0943180:intron | 40.0% | |
| ! | TTGAGATCAATGGTTCTGTC+TGG | - | chr6_3:18559328-18559347 | Msa0943180:intron | 40.0% |
| ! | TCTGGTTTCTTGTTGGATCT+TGG | - | chr6_3:18559346-18559365 | Msa0943180:intron | 40.0% |
| TCAAATAGCTTCGCTTATCG+TGG | + | chr6_3:18559560-18559579 | None:intergenic | 40.0% | |
| AATGGTGCTTGGATGTAGAA+GGG | - | chr6_3:18559738-18559757 | Msa0943180:intron | 40.0% | |
| CCCTAGAAACTCAGATTCCA+TGG | - | chr6_3:18555397-18555416 | Msa0943180:three_prime_UTR | 45.0% | |
| ! | CTTGGTGTATTCAGCTTCAG+CGG | + | chr6_3:18555477-18555496 | None:intergenic | 45.0% |
| CAGAATTTGACAAGATGGGG+TGG | - | chr6_3:18556649-18556668 | Msa0943180:intron | 45.0% | |
| AGGGTCATCTTCTTTGACTC+GGG | + | chr6_3:18556709-18556728 | None:intergenic | 45.0% | |
| GAGTCAAAGAAGATGACCCT+TGG | - | chr6_3:18556709-18556728 | Msa0943180:intron | 45.0% | |
| GAAGCGTGAAGAATGCTTAG+GGG | - | chr6_3:18556964-18556983 | Msa0943180:intron | 45.0% | |
| AGGGGCCATATAATGATACG+GGG | - | chr6_3:18556982-18557001 | Msa0943180:intron | 45.0% | |
| ATTCTGACTGCAGCAAATCG+GGG | - | chr6_3:18557227-18557246 | Msa0943180:intron | 45.0% | |
| !! | TGCTATTTCAAAGCTGGAGG+AGG | - | chr6_3:18557325-18557344 | Msa0943180:intron | 45.0% |
| !! | CAAAGAGCGTCATGCTTGTT+GGG | + | chr6_3:18557365-18557384 | None:intergenic | 45.0% |
| TTTAAACCCAGATGTGGACG+AGG | - | chr6_3:18557418-18557437 | Msa0943180:intron | 45.0% | |
| TTGCGGTAGAGTTCGTTTGA+AGG | + | chr6_3:18557595-18557614 | None:intergenic | 45.0% | |
| CGAACTCTACCGCAAATCAT+TGG | - | chr6_3:18557600-18557619 | Msa0943180:intron | 45.0% | |
| CTACCGCAAATCATTGGAAG+TGG | - | chr6_3:18557606-18557625 | Msa0943180:intron | 45.0% | |
| CAGCCACTTCCAATGATTTG+CGG | + | chr6_3:18557612-18557631 | None:intergenic | 45.0% | |
| ATCATTGGAAGTGGCTGCTA+AGG | - | chr6_3:18557615-18557634 | Msa0943180:intron | 45.0% | |
| AGTGGCTGCTAAGGTATGTT+CGG | - | chr6_3:18557624-18557643 | Msa0943180:intron | 45.0% | |
| CCCTTATTGAAGGAGTTCAC+TGG | - | chr6_3:18557814-18557833 | Msa0943180:CDS | 45.0% | |
| ! | CTGGTGTTTCCTTTTCAACG+AGG | - | chr6_3:18557953-18557972 | Msa0943180:CDS | 45.0% |
| GGTACATGTTCGATTAGACC+GGG | - | chr6_3:18557974-18557993 | Msa0943180:intron | 45.0% | |
| ATATGTCACCCATTGTGCTG+TGG | - | chr6_3:18558032-18558051 | Msa0943180:intron | 45.0% | |
| CTTTGCAAACCACAGCACAA+TGG | + | chr6_3:18558044-18558063 | None:intergenic | 45.0% | |
| TTGCACAGTTCTTGTGCAAC+AGG | - | chr6_3:18558202-18558221 | Msa0943180:intron | 45.0% | |
| TGCACAGTTCTTGTGCAACA+GGG | - | chr6_3:18558203-18558222 | Msa0943180:intron | 45.0% | |
| TTGTAGTTTGGTCTCTTGGG+AGG | - | chr6_3:18558565-18558584 | Msa0943180:intron | 45.0% | |
| TGTAGTTTGGTCTCTTGGGA+GGG | - | chr6_3:18558566-18558585 | Msa0943180:intron | 45.0% | |
| ATTAGGTCAGCAAGCAGTAG+AGG | - | chr6_3:18558746-18558765 | Msa0943180:intron | 45.0% | |
| ! | GGTTCTGTCTGGTTTCTTGT+TGG | - | chr6_3:18559339-18559358 | Msa0943180:intron | 45.0% |
| CATACTTGGATGGGTAATCC+TGG | - | chr6_3:18559469-18559488 | Msa0943180:intron | 45.0% | |
| ATGTAACAATGCCAACAGCC+AGG | + | chr6_3:18559490-18559509 | None:intergenic | 45.0% | |
| TGGCTGTTGGCATTGTTACA+TGG | - | chr6_3:18559489-18559508 | Msa0943180:intron | 45.0% | |
| GGCTGTTGGCATTGTTACAT+GGG | - | chr6_3:18559490-18559509 | Msa0943180:intron | 45.0% | |
| TGTTGGCATTGTTACATGGG+TGG | - | chr6_3:18559493-18559512 | Msa0943180:intron | 45.0% | |
| GTTGGCATTGTTACATGGGT+GGG | - | chr6_3:18559494-18559513 | Msa0943180:intron | 45.0% | |
| GAGTAGCTATGAATGGTGCT+TGG | - | chr6_3:18559727-18559746 | Msa0943180:intron | 45.0% | |
| GAATGGTGCTTGGATGTAGA+AGG | - | chr6_3:18559737-18559756 | Msa0943180:intron | 45.0% | |
| ATGGTGCTTGGATGTAGAAG+GGG | - | chr6_3:18559739-18559758 | Msa0943180:intron | 45.0% | |
| !! | TAAAATAAAATGAAAAAAAA+GGG | + | chr6_3:18555536-18555555 | None:intergenic | 5.0% |
| !! | TTAAAATAAAATGAAAAAAA+AGG | + | chr6_3:18555537-18555556 | None:intergenic | 5.0% |
| ! | ATCAGCATCGAGAGGGTTCT+TGG | + | chr6_3:18555495-18555514 | None:intergenic | 50.0% |
| ! | GACTGACATCAGCATCGAGA+GGG | + | chr6_3:18555502-18555521 | None:intergenic | 50.0% |
| ! | AGACTGACATCAGCATCGAG+AGG | + | chr6_3:18555503-18555522 | None:intergenic | 50.0% |
| GTACAGAGGAGTTGTTGTGC+TGG | - | chr6_3:18556467-18556486 | Msa0943180:intron | 50.0% | |
| TTCTGACTGCAGCAAATCGG+GGG | - | chr6_3:18557228-18557247 | Msa0943180:intron | 50.0% | |
| !! | CCAAAGAGCGTCATGCTTGT+TGG | + | chr6_3:18557366-18557385 | None:intergenic | 50.0% |
| CCAACAAGCATGACGCTCTT+TGG | - | chr6_3:18557363-18557382 | Msa0943180:intron | 50.0% | |
| !! | GTGAAGTGAGAGCATTTCCC+AGG | + | chr6_3:18557391-18557410 | None:intergenic | 50.0% |
| GGGAAATGCTCTCACTTCAC+AGG | - | chr6_3:18557391-18557410 | Msa0943180:intron | 50.0% | |
| CTTTAGCCTCGTCCACATCT+GGG | + | chr6_3:18557427-18557446 | None:intergenic | 50.0% | |
| ACTTTAGCCTCGTCCACATC+TGG | + | chr6_3:18557428-18557447 | None:intergenic | 50.0% | |
| ! | GCAACAGGGTTTTGCTTCCT+AGG | - | chr6_3:18558217-18558236 | Msa0943180:intron | 50.0% |
| CAGGAAGGCAGATCAAAAGG+TGG | + | chr6_3:18558398-18558417 | None:intergenic | 50.0% | |
| CAGAGGAGTTGTTGTGCTGG+AGG | - | chr6_3:18556470-18556489 | Msa0943180:intron | 55.0% | |
| TCTGACTGCAGCAAATCGGG+GGG | - | chr6_3:18557229-18557248 | Msa0943180:intron | 55.0% | |
| !! | CATGACGCTCTTTGGTGCCT+GGG | - | chr6_3:18557371-18557390 | Msa0943180:intron | 55.0% |
| GCTGGTCCATCTTCTTCTGC+TGG | - | chr6_3:18558771-18558790 | Msa0943180:intron | 55.0% | |
| GGATGGGTAATCCTGGCTGT+TGG | - | chr6_3:18559476-18559495 | Msa0943180:intron | 55.0% | |
| TTCGCTTATCGTGGAGCTGG+AGG | + | chr6_3:18559551-18559570 | None:intergenic | 55.0% | |
| AGCTTCGCTTATCGTGGAGC+TGG | + | chr6_3:18559554-18559573 | None:intergenic | 55.0% | |
| !! | GCATGACGCTCTTTGGTGCC+TGG | - | chr6_3:18557370-18557389 | Msa0943180:intron | 60.0% |
| CAGCAAGCAGTAGAGGCAGC+TGG | - | chr6_3:18558753-18558772 | Msa0943180:intron | 60.0% | |
| TATCGTGGAGCTGGAGGAGG+TGG | + | chr6_3:18559545-18559564 | None:intergenic | 60.0% | |
| GCTTATCGTGGAGCTGGAGG+AGG | + | chr6_3:18559548-18559567 | None:intergenic | 60.0% | |
| !! | CTGGAGGAGGTGGTGGTGGT+AGG | + | chr6_3:18559535-18559554 | None:intergenic | 65.0% |
| ! | GGAGCTGGAGGAGGTGGTGG+TGG | + | chr6_3:18559539-18559558 | None:intergenic | 70.0% |
| CGTGGAGCTGGAGGAGGTGG+TGG | + | chr6_3:18559542-18559561 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 18555351 | 18559953 | 18555351 | ID=Msa0943180;Name=Msa0943180 |
| chr6_3 | mRNA | 18555351 | 18559953 | 18555351 | ID=Msa0943180-mRNA-1;Parent=Msa0943180;Name=Msa0943180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=65|1|1|1|1|1|6|388|206 |
| chr6_3 | exon | 18555351 | 18555873 | 18555351 | ID=Msa0943180-mRNA-1:exon:5564;Parent=Msa0943180-mRNA-1 |
| chr6_3 | exon | 18556504 | 18556593 | 18556504 | ID=Msa0943180-mRNA-1:exon:5563;Parent=Msa0943180-mRNA-1 |
| chr6_3 | exon | 18557668 | 18557715 | 18557668 | ID=Msa0943180-mRNA-1:exon:5562;Parent=Msa0943180-mRNA-1 |
| chr6_3 | exon | 18557811 | 18557980 | 18557811 | ID=Msa0943180-mRNA-1:exon:5561;Parent=Msa0943180-mRNA-1 |
| chr6_3 | exon | 18558574 | 18558652 | 18558574 | ID=Msa0943180-mRNA-1:exon:5560;Parent=Msa0943180-mRNA-1 |
| chr6_3 | exon | 18559790 | 18559953 | 18559790 | ID=Msa0943180-mRNA-1:exon:5559;Parent=Msa0943180-mRNA-1 |
| chr6_3 | five_prime_UTR | 18559889 | 18559953 | 18559889 | ID=Msa0943180-mRNA-1:five_prime_utr;Parent=Msa0943180-mRNA-1 |
| chr6_3 | CDS | 18559790 | 18559888 | 18559790 | ID=Msa0943180-mRNA-1:cds;Parent=Msa0943180-mRNA-1 |
| chr6_3 | CDS | 18558574 | 18558652 | 18558574 | ID=Msa0943180-mRNA-1:cds;Parent=Msa0943180-mRNA-1 |
| chr6_3 | CDS | 18557811 | 18557980 | 18557811 | ID=Msa0943180-mRNA-1:cds;Parent=Msa0943180-mRNA-1 |
| chr6_3 | CDS | 18557668 | 18557715 | 18557668 | ID=Msa0943180-mRNA-1:cds;Parent=Msa0943180-mRNA-1 |
| chr6_3 | CDS | 18556504 | 18556593 | 18556504 | ID=Msa0943180-mRNA-1:cds;Parent=Msa0943180-mRNA-1 |
| chr6_3 | CDS | 18555739 | 18555873 | 18555739 | ID=Msa0943180-mRNA-1:cds;Parent=Msa0943180-mRNA-1 |
| chr6_3 | three_prime_UTR | 18555351 | 18555738 | 18555351 | ID=Msa0943180-mRNA-1:three_prime_utr;Parent=Msa0943180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
