Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221340 | XP_039686739.1 | 82.310 | 684 | 79 | 7 | 1 | 666 | 1 | 660 | 0.0 | 1022 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221340 | sp|Q67ZB3|FRL3_ARATH | 28.025 | 157 | 113 | 0 | 510 | 666 | 300 | 456 | 1.53e-12 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221340 | A0A072VCF9 | 82.310 | 684 | 79 | 7 | 1 | 666 | 1 | 660 | 0.0 | 1022 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0221340 | 0.827751 | 1.315611e-54 | -8.615850e-47 |
| Msa0157290 | Msa0221340 | 0.827594 | 1.435268e-54 | -8.615850e-47 |
| Msa0215320 | Msa0221340 | -0.816971 | 4.198652e-52 | -8.615850e-47 |
| Msa0221340 | Msa0337900 | 0.825492 | 4.550295e-54 | -8.615850e-47 |
| Msa0221340 | Msa0822870 | 0.802294 | 6.005824e-49 | -8.615850e-47 |
| Msa0221340 | Msa0844490 | 0.809010 | 2.337222e-50 | -8.615850e-47 |
| Msa0221340 | Msa0880140 | 0.824465 | 7.956373e-54 | -8.615850e-47 |
| Msa0221340 | Msa1014540 | 0.806945 | 6.427245e-50 | -8.615850e-47 |
| Msa0221340 | Msa1079180 | 0.802577 | 5.252899e-49 | -8.615850e-47 |
| Msa0221340 | Msa1284680 | 0.809955 | 1.465237e-50 | -8.615850e-47 |
| Msa0221340 | Msa1374470 | 0.809615 | 1.733721e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221340 | MtrunA17_Chr2g0325621 | 82.310 | 684 | 79 | 7 | 1 | 666 | 1 | 660 | 0.0 | 1022 |
| Msa0221340 | MtrunA17_Chr6g0471251 | 47.146 | 806 | 246 | 16 | 1 | 666 | 2 | 767 | 0.0 | 580 |
| Msa0221340 | MtrunA17_Chr2g0325351 | 51.213 | 742 | 219 | 18 | 7 | 666 | 8 | 688 | 0.0 | 562 |
| Msa0221340 | MtrunA17_Chr2g0325611 | 60.928 | 517 | 152 | 7 | 198 | 666 | 76 | 590 | 8.44e-180 | 523 |
| Msa0221340 | MtrunA17_Chr2g0325661 | 51.017 | 590 | 205 | 12 | 124 | 666 | 324 | 876 | 2.68e-147 | 449 |
| Msa0221340 | MtrunA17_Chr2g0325661 | 37.086 | 453 | 174 | 12 | 1 | 399 | 1 | 396 | 3.62e-55 | 202 |
| Msa0221340 | MtrunA17_Chr2g0325811 | 38.895 | 851 | 313 | 15 | 1 | 665 | 1 | 830 | 6.80e-138 | 424 |
| Msa0221340 | MtrunA17_Chr2g0325701 | 48.443 | 578 | 226 | 10 | 24 | 564 | 47 | 589 | 4.57e-137 | 414 |
| Msa0221340 | MtrunA17_Chr2g0333341 | 46.819 | 613 | 194 | 12 | 37 | 610 | 103 | 622 | 1.97e-129 | 395 |
| Msa0221340 | MtrunA17_Chr2g0325711 | 37.641 | 797 | 318 | 14 | 27 | 648 | 26 | 818 | 2.17e-125 | 391 |
| Msa0221340 | MtrunA17_Chr2g0325361 | 49.315 | 511 | 199 | 5 | 215 | 666 | 568 | 1077 | 7.97e-121 | 385 |
| Msa0221340 | MtrunA17_Chr2g0325361 | 52.078 | 409 | 145 | 7 | 22 | 393 | 8 | 402 | 2.40e-96 | 320 |
| Msa0221340 | MtrunA17_Chr2g0325361 | 39.506 | 162 | 81 | 2 | 232 | 383 | 494 | 648 | 7.20e-18 | 88.2 |
| Msa0221340 | MtrunA17_Chr2g0325361 | 40.000 | 155 | 93 | 0 | 239 | 393 | 336 | 490 | 8.79e-16 | 81.6 |
| Msa0221340 | MtrunA17_Chr2g0325721 | 55.432 | 451 | 153 | 8 | 1 | 411 | 1 | 443 | 5.20e-119 | 364 |
| Msa0221340 | MtrunA17_Chr2g0280141 | 44.221 | 597 | 265 | 15 | 116 | 666 | 243 | 817 | 6.98e-115 | 363 |
| Msa0221340 | MtrunA17_Chr2g0280141 | 39.467 | 375 | 180 | 10 | 27 | 392 | 25 | 361 | 2.93e-44 | 170 |
| Msa0221340 | MtrunA17_Chr5g0434761 | 65.660 | 265 | 84 | 2 | 409 | 666 | 1 | 265 | 4.77e-111 | 335 |
| Msa0221340 | MtrunA17_Chr2g0325281 | 53.431 | 408 | 163 | 5 | 22 | 409 | 8 | 408 | 6.12e-111 | 347 |
| Msa0221340 | MtrunA17_Chr2g0325281 | 32.716 | 324 | 159 | 11 | 126 | 409 | 297 | 601 | 3.29e-16 | 82.4 |
| Msa0221340 | MtrunA17_Chr2g0325281 | 34.222 | 225 | 122 | 4 | 185 | 383 | 242 | 466 | 3.96e-13 | 72.8 |
| Msa0221340 | MtrunA17_Chr5g0416271 | 44.052 | 538 | 214 | 13 | 45 | 564 | 14 | 482 | 2.63e-110 | 342 |
| Msa0221340 | MtrunA17_Chr2g0325861 | 56.623 | 385 | 122 | 7 | 1 | 348 | 2 | 378 | 1.10e-108 | 348 |
| Msa0221340 | MtrunA17_Chr2g0325861 | 43.382 | 408 | 158 | 5 | 253 | 595 | 451 | 850 | 1.38e-76 | 262 |
| Msa0221340 | MtrunA17_Chr2g0325321 | 50.444 | 450 | 139 | 10 | 22 | 398 | 8 | 446 | 2.39e-104 | 334 |
| Msa0221340 | MtrunA17_Chr2g0325321 | 47.781 | 383 | 150 | 6 | 231 | 567 | 383 | 761 | 1.37e-70 | 244 |
| Msa0221340 | MtrunA17_Chr2g0325231 | 51.852 | 405 | 132 | 6 | 232 | 582 | 492 | 887 | 5.11e-104 | 337 |
| Msa0221340 | MtrunA17_Chr2g0325231 | 43.692 | 325 | 160 | 4 | 96 | 411 | 108 | 418 | 1.21e-54 | 201 |
| Msa0221340 | MtrunA17_Chr2g0325631 | 69.057 | 265 | 75 | 2 | 409 | 666 | 1 | 265 | 1.52e-101 | 311 |
| Msa0221340 | MtrunA17_Chr2g0325221 | 45.758 | 389 | 173 | 7 | 24 | 383 | 48 | 427 | 7.90e-75 | 254 |
| Msa0221340 | MtrunA17_Chr2g0325221 | 56.436 | 101 | 44 | 0 | 565 | 665 | 599 | 699 | 8.24e-24 | 106 |
| Msa0221340 | MtrunA17_Chr2g0325221 | 31.650 | 297 | 153 | 5 | 126 | 394 | 314 | 588 | 1.35e-15 | 80.5 |
| Msa0221340 | MtrunA17_Chr2g0325291 | 62.360 | 178 | 67 | 0 | 445 | 622 | 29 | 206 | 1.76e-60 | 202 |
| Msa0221340 | MtrunA17_Chr2g0325651 | 41.346 | 416 | 162 | 14 | 5 | 393 | 7 | 367 | 8.99e-59 | 202 |
| Msa0221340 | MtrunA17_Chr7g0235901 | 44.966 | 298 | 145 | 5 | 96 | 379 | 19 | 311 | 2.26e-57 | 196 |
| Msa0221340 | MtrunA17_Chr2g0325741 | 42.991 | 321 | 124 | 11 | 1 | 279 | 2 | 305 | 1.12e-55 | 192 |
| Msa0221340 | MtrunA17_Chr2g0325691 | 39.278 | 443 | 191 | 10 | 5 | 383 | 6 | 434 | 3.52e-54 | 197 |
| Msa0221340 | MtrunA17_Chr2g0325691 | 39.716 | 282 | 138 | 7 | 128 | 394 | 449 | 713 | 3.58e-28 | 120 |
| Msa0221340 | MtrunA17_Chr2g0325691 | 35.433 | 254 | 132 | 8 | 183 | 411 | 330 | 576 | 1.43e-13 | 74.3 |
| Msa0221340 | MtrunA17_Chr2g0325781 | 39.823 | 339 | 138 | 10 | 1 | 311 | 1 | 301 | 2.50e-51 | 180 |
| Msa0221340 | MtrunA17_Chr2g0332961 | 44.910 | 334 | 142 | 9 | 218 | 537 | 48 | 353 | 1.05e-50 | 179 |
| Msa0221340 | MtrunA17_Chr2g0332961 | 30.916 | 262 | 131 | 8 | 60 | 310 | 11 | 233 | 1.54e-12 | 69.7 |
| Msa0221340 | MtrunA17_Chr5g0434741 | 36.464 | 362 | 155 | 10 | 1 | 346 | 1 | 303 | 5.90e-47 | 168 |
| Msa0221340 | MtrunA17_Chr2g0325771 | 62.147 | 177 | 50 | 4 | 396 | 564 | 5 | 172 | 2.68e-46 | 162 |
| Msa0221340 | MtrunA17_Chr2g0325331 | 59.236 | 157 | 58 | 1 | 409 | 559 | 1 | 157 | 5.22e-45 | 158 |
| Msa0221340 | MtrunA17_Chr2g0325261 | 37.468 | 387 | 140 | 13 | 1 | 381 | 2 | 292 | 1.64e-44 | 161 |
| Msa0221340 | MtrunA17_Chr2g0325341 | 37.468 | 387 | 140 | 13 | 1 | 381 | 2 | 292 | 1.64e-44 | 161 |
| Msa0221340 | MtrunA17_Chr2g0325201 | 48.444 | 225 | 104 | 2 | 146 | 358 | 2 | 226 | 2.23e-44 | 158 |
| Msa0221340 | MtrunA17_Chr8g0361651 | 34.312 | 443 | 208 | 13 | 232 | 662 | 32 | 403 | 1.08e-43 | 164 |
| Msa0221340 | MtrunA17_Chr2g0332951 | 40.927 | 259 | 96 | 5 | 310 | 564 | 2 | 207 | 4.84e-42 | 151 |
| Msa0221340 | MtrunA17_Chr2g0325761 | 34.656 | 479 | 200 | 12 | 1 | 383 | 1 | 462 | 2.75e-41 | 160 |
| Msa0221340 | MtrunA17_Chr2g0325761 | 57.576 | 99 | 42 | 0 | 564 | 662 | 591 | 689 | 3.55e-24 | 107 |
| Msa0221340 | MtrunA17_Chr2g0325761 | 37.500 | 200 | 101 | 3 | 218 | 393 | 392 | 591 | 5.48e-21 | 97.8 |
| Msa0221340 | MtrunA17_Chr2g0325311 | 67.227 | 119 | 36 | 3 | 551 | 666 | 1 | 119 | 9.35e-41 | 144 |
| Msa0221340 | MtrunA17_Chr3g0140591 | 54.545 | 165 | 68 | 2 | 406 | 564 | 6 | 169 | 1.23e-40 | 146 |
| Msa0221340 | MtrunA17_Chr2g0325271 | 64.423 | 104 | 36 | 1 | 564 | 666 | 40 | 143 | 3.67e-35 | 130 |
| Msa0221340 | MtrunA17_Chr4g0024061 | 40.075 | 267 | 115 | 9 | 405 | 662 | 419 | 649 | 5.12e-34 | 138 |
| Msa0221340 | MtrunA17_Chr2g0325241 | 35.000 | 300 | 160 | 5 | 216 | 484 | 124 | 419 | 4.72e-31 | 126 |
| Msa0221340 | MtrunA17_Chr7g0235921 | 72.449 | 98 | 26 | 1 | 481 | 578 | 1 | 97 | 4.91e-27 | 105 |
| Msa0221340 | MtrunA17_Chr2g0325751 | 41.279 | 172 | 71 | 4 | 260 | 419 | 2 | 155 | 1.56e-23 | 97.4 |
| Msa0221340 | MtrunA17_Chr4g0044221 | 34.076 | 314 | 153 | 12 | 212 | 502 | 12 | 294 | 2.17e-23 | 101 |
| Msa0221340 | MtrunA17_Chr4g0044221 | 39.086 | 197 | 101 | 4 | 123 | 317 | 14 | 193 | 1.10e-20 | 93.6 |
| Msa0221340 | MtrunA17_Chr3g0140581 | 40.385 | 156 | 92 | 1 | 100 | 255 | 1 | 155 | 4.12e-22 | 93.2 |
| Msa0221340 | MtrunA17_Chr2g0325641 | 34.457 | 267 | 110 | 6 | 190 | 404 | 58 | 311 | 2.23e-21 | 95.9 |
| Msa0221340 | MtrunA17_Chr2g0325641 | 41.860 | 129 | 65 | 1 | 265 | 383 | 1 | 129 | 6.07e-13 | 70.5 |
| Msa0221340 | MtrunA17_Chr2g0325641 | 34.762 | 210 | 89 | 6 | 244 | 407 | 23 | 230 | 7.26e-11 | 64.3 |
| Msa0221340 | MtrunA17_Chr2g0325791 | 42.675 | 157 | 61 | 4 | 190 | 339 | 22 | 156 | 5.37e-18 | 85.9 |
| Msa0221340 | MtrunA17_Chr2g0325791 | 32.456 | 228 | 113 | 6 | 232 | 457 | 25 | 213 | 6.35e-12 | 67.4 |
| Msa0221340 | MtrunA17_Chr2g0325801 | 68.254 | 63 | 20 | 0 | 96 | 158 | 63 | 125 | 5.37e-18 | 80.5 |
| Msa0221340 | MtrunA17_Chr4g0053711 | 25.641 | 429 | 253 | 14 | 269 | 648 | 13 | 424 | 1.67e-17 | 86.3 |
| Msa0221340 | MtrunA17_Chr5g0434751 | 34.035 | 285 | 135 | 9 | 140 | 389 | 2 | 268 | 3.38e-17 | 82.8 |
| Msa0221340 | MtrunA17_Chr3g0101121 | 29.545 | 176 | 119 | 2 | 474 | 648 | 172 | 343 | 3.95e-13 | 72.4 |
| Msa0221340 | MtrunA17_Chr5g0445281 | 25.000 | 184 | 135 | 1 | 475 | 658 | 198 | 378 | 8.39e-12 | 68.2 |
| Msa0221340 | MtrunA17_Chr8g0337651 | 29.054 | 148 | 99 | 3 | 499 | 645 | 288 | 430 | 6.20e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221340 | AT5G48385.1 | 28.025 | 157 | 113 | 0 | 510 | 666 | 300 | 456 | 1.55e-13 | 74.3 |
| Msa0221340 | AT1G31814.1 | 26.425 | 193 | 135 | 5 | 466 | 654 | 153 | 342 | 8.65e-13 | 71.6 |
Find 106 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATCAGTTTGGCATTT+TGG | 0.034359 | 2_1:-69890761 | None:intergenic |
| GGCTTTGCAAATAAAGTTTC+TGG | 0.144689 | 2_1:+69889618 | Msa0221340:CDS |
| CTCTTCAGTATCTCTCTTTA+TGG | 0.145269 | 2_1:-69887625 | None:intergenic |
| CTTCTTACACAGTGGATTAA+TGG | 0.178750 | 2_1:-69889310 | None:intergenic |
| TTTCGATGAAGATGAAATTT+TGG | 0.207548 | 2_1:+69889539 | Msa0221340:CDS |
| GATACAATGAACAAATTAAT+TGG | 0.217654 | 2_1:+69887957 | Msa0221340:CDS |
| AACTTATACGCTACTTCTAT+TGG | 0.232054 | 2_1:+69891104 | Msa0221340:three_prime_UTR |
| TGATTCAAAGCTGAATAAAT+TGG | 0.240384 | 2_1:+69888346 | Msa0221340:CDS |
| GAAGATTCTTTGGCGGTTCT+TGG | 0.262705 | 2_1:+69889477 | Msa0221340:CDS |
| AGATCAAGAAATTGCTAGTT+TGG | 0.267521 | 2_1:+69890926 | Msa0221340:CDS |
| ACTTATACGCTACTTCTATT+GGG | 0.291411 | 2_1:+69891105 | Msa0221340:three_prime_UTR |
| AGAGAATAATGAAGATTCTT+TGG | 0.307674 | 2_1:+69889467 | Msa0221340:CDS |
| TTCTTACACAGTGGATTAAT+GGG | 0.334842 | 2_1:-69889309 | None:intergenic |
| TGTATCAAGCTCTATCTCTT+TGG | 0.338319 | 2_1:-69887940 | None:intergenic |
| GTTCCTCTTCCTTCCTTTCA+CGG | 0.342021 | 2_1:-69887869 | None:intergenic |
| GAACTTGGAAGGACGAATAA+AGG | 0.361370 | 2_1:+69888097 | Msa0221340:CDS |
| AACTGTTCAACAATGCATTT+CGG | 0.365554 | 2_1:+69890950 | Msa0221340:CDS |
| AATTTATTCAGCTTTGAATC+AGG | 0.368146 | 2_1:-69888344 | None:intergenic |
| TGAATGTACTTTGGAACTTA+AGG | 0.374070 | 2_1:+69887917 | Msa0221340:CDS |
| AGAAACATGCAAGGAGGAAT+CGG | 0.392956 | 2_1:-69887424 | None:intergenic |
| CTCACACAATCTTCAATCTT+CGG | 0.401450 | 2_1:-69889399 | None:intergenic |
| CGAAGAGCAGCTCTATTTGA+TGG | 0.401783 | 2_1:+69887764 | Msa0221340:CDS |
| CAGCAGAACCTTGATTTCAA+TGG | 0.413290 | 2_1:-69890808 | None:intergenic |
| TATTTGATGGAAAACATGAT+TGG | 0.423802 | 2_1:+69887777 | Msa0221340:CDS |
| CAGCTTTGAATCAGGATCCT+TGG | 0.431352 | 2_1:-69888336 | None:intergenic |
| GAAGAATCAACTTGAGGGTC+AGG | 0.432912 | 2_1:+69888049 | Msa0221340:CDS |
| GAAACATGCAAGGAGGAATC+GGG | 0.437891 | 2_1:-69887423 | None:intergenic |
| ACTGCTCTCACAAATCAGTT+TGG | 0.447345 | 2_1:-69890769 | None:intergenic |
| AACCTTGATTTCAATGGAGT+TGG | 0.456486 | 2_1:-69890802 | None:intergenic |
| GAAGGAGTTTCAATTAAAAG+AGG | 0.459023 | 2_1:+69888157 | Msa0221340:CDS |
| ATGAAAGATCATCTTCATCT+TGG | 0.459468 | 2_1:-69887485 | None:intergenic |
| GAGGTGCTTGATAAGGAGAT+TGG | 0.471444 | 2_1:+69890990 | Msa0221340:CDS |
| TATAGTTTACCTGTCAACTT+AGG | 0.471727 | 2_1:-69888386 | None:intergenic |
| AACCAACTCCATTGAAATCA+AGG | 0.472960 | 2_1:+69890800 | Msa0221340:CDS |
| AACAACCTGATGTAAAGAAA+GGG | 0.477649 | 2_1:+69891065 | Msa0221340:three_prime_UTR |
| ATTCAGTTGTGCATATAACT+TGG | 0.485633 | 2_1:+69890698 | Msa0221340:CDS |
| AATTATTTGAGGAATGCAAA+TGG | 0.488538 | 2_1:+69887571 | Msa0221340:CDS |
| TAAATTGGATGGACAAATGA+AGG | 0.494056 | 2_1:+69888361 | Msa0221340:CDS |
| GAACAACCTGATGTAAAGAA+AGG | 0.494331 | 2_1:+69891064 | Msa0221340:three_prime_UTR |
| CATTAATCCACTGTGTAAGA+AGG | 0.495309 | 2_1:+69889311 | Msa0221340:CDS |
| TTAAAAGAGGAGGAATTTGA+AGG | 0.496577 | 2_1:+69888170 | Msa0221340:CDS |
| ACAGTCTGAGGTGCTTGATA+AGG | 0.497934 | 2_1:+69890983 | Msa0221340:CDS |
| GCAATTCGAGGGACAAATGA+AGG | 0.498239 | 2_1:+69888139 | Msa0221340:CDS |
| ATTAACGTGGAGCAAGAATC+CGG | 0.499253 | 2_1:+69888428 | Msa0221340:CDS |
| AGTCATTGATAACATTGATA+AGG | 0.503822 | 2_1:+69887845 | Msa0221340:CDS |
| TCGTGCTGAAATGAAGGAAT+TGG | 0.509370 | 2_1:+69888019 | Msa0221340:CDS |
| ATAATTCTTCTAACAGCGTA+AGG | 0.510690 | 2_1:-69887554 | None:intergenic |
| TGAGTCAGAGAAGAAGAACT+TGG | 0.512987 | 2_1:+69888082 | Msa0221340:CDS |
| ATGGAGATGTTTCAGACCCT+GGG | 0.513205 | 2_1:+69889597 | Msa0221340:CDS |
| GGAATTTGAAGGCAGAGTGA+AGG | 0.514651 | 2_1:+69888181 | Msa0221340:CDS |
| ATACGCAGTTGCATCTTACA+TGG | 0.515839 | 2_1:+69889152 | Msa0221340:intron |
| AAACTTTATTTGCAAAGCCC+AGG | 0.517429 | 2_1:-69889614 | None:intergenic |
| TGAAGAACGTCCGAAAGAAA+AGG | 0.517838 | 2_1:+69888271 | Msa0221340:CDS |
| TCATCATGACCACAAAACTT+TGG | 0.518656 | 2_1:-69887261 | None:intergenic |
| TTCTGTTAAGATTAAGAAGA+GGG | 0.522097 | 2_1:+69887383 | Msa0221340:CDS |
| TATGGAGATGTTTCAGACCC+TGG | 0.527809 | 2_1:+69889596 | Msa0221340:CDS |
| TGGTGGAACAAGTTTGCAGT+TGG | 0.527919 | 2_1:+69889197 | Msa0221340:CDS |
| CAATTAAGTCATACCATTGG+TGG | 0.529146 | 2_1:+69889180 | Msa0221340:CDS |
| GGAACTCGAAGAACAAGTTA+AGG | 0.530912 | 2_1:+69888223 | Msa0221340:CDS |
| ATGAAGGAGCCTAAGTTGAC+AGG | 0.531788 | 2_1:+69888377 | Msa0221340:CDS |
| GGAGTTTCAATTAAAAGAGG+AGG | 0.531791 | 2_1:+69888160 | Msa0221340:CDS |
| GAATGGTCGTGCTGAAATGA+AGG | 0.534624 | 2_1:+69888013 | Msa0221340:CDS |
| GAATAATGAAGATTCTTTGG+CGG | 0.535139 | 2_1:+69889470 | Msa0221340:CDS |
| TGAAGTTCGTGACAAAGTGC+AGG | 0.535861 | 2_1:+69887704 | Msa0221340:CDS |
| TCAAAGCTGAATAAATTGGA+TGG | 0.541007 | 2_1:+69888350 | Msa0221340:CDS |
| TCAATGAAGAATCAACTTGA+GGG | 0.542352 | 2_1:+69888044 | Msa0221340:CDS |
| AACTTTATTTGCAAAGCCCA+GGG | 0.547664 | 2_1:-69889613 | None:intergenic |
| GGAGCTCGAATCAAAGAAGA+AGG | 0.548520 | 2_1:+69888244 | Msa0221340:CDS |
| TTAAGTTTGGGAACATGTAG+TGG | 0.549262 | 2_1:+69887345 | Msa0221340:CDS |
| GCTGTTAGAAGAATTATTTG+AGG | 0.549884 | 2_1:+69887560 | Msa0221340:CDS |
| TTAGAGTCTGAAAAGGAGAA+TGG | 0.552697 | 2_1:+69887996 | Msa0221340:CDS |
| GTCAATGAAGAATCAACTTG+AGG | 0.555619 | 2_1:+69888043 | Msa0221340:CDS |
| AAGAAAAGGTGAATGAGCTC+AGG | 0.557785 | 2_1:+69888285 | Msa0221340:CDS |
| GGAAATGAAATCAAAGGTGG+AGG | 0.559109 | 2_1:+69888202 | Msa0221340:CDS |
| TGCTCAGCACAAGATAGCTA+TGG | 0.565711 | 2_1:+69889578 | Msa0221340:CDS |
| CTGCAAACTTGTTCCACCAA+TGG | 0.566622 | 2_1:-69889193 | None:intergenic |
| GCTGTTTGAAAGACAAGCCA+AGG | 0.569057 | 2_1:+69888319 | Msa0221340:CDS |
| TGAGGAAAACTTTGTGACAA+TGG | 0.572677 | 2_1:-69887318 | None:intergenic |
| TGATAAGGACCGTGAAAGGA+AGG | 0.575886 | 2_1:+69887860 | Msa0221340:CDS |
| GAAGGAAATGAAATCAAAGG+TGG | 0.578454 | 2_1:+69888199 | Msa0221340:CDS |
| AGAGCGCAAGCTAGAGCTCA+AGG | 0.583452 | 2_1:+69887800 | Msa0221340:CDS |
| ATCAAGAGAGAAGCAATTCG+AGG | 0.585327 | 2_1:+69888127 | Msa0221340:CDS |
| GGACCGTGAAAGGAAGGAAG+AGG | 0.585661 | 2_1:+69887866 | Msa0221340:CDS |
| TCAGAGAAGAAGAACTTGGA+AGG | 0.587930 | 2_1:+69888086 | Msa0221340:CDS |
| ATTAATCCACTGTGTAAGAA+GGG | 0.589689 | 2_1:+69889312 | Msa0221340:CDS |
| TTGTGTGAGAGAAGAAGCAC+TGG | 0.592635 | 2_1:+69889413 | Msa0221340:CDS |
| GATCAATTAAGTCATACCAT+TGG | 0.594274 | 2_1:+69889177 | Msa0221340:CDS |
| TTTCTTAACAGAAACATGCA+AGG | 0.602293 | 2_1:-69887433 | None:intergenic |
| TTGTTGAGAATCTTATCAAG+AGG | 0.606243 | 2_1:+69890652 | Msa0221340:CDS |
| GTTCCCAAACTTAAAATCTG+AGG | 0.607217 | 2_1:-69887336 | None:intergenic |
| ACATTGATAAGGACCGTGAA+AGG | 0.607617 | 2_1:+69887856 | Msa0221340:CDS |
| GGATTGCAAACTACAGTCTG+AGG | 0.612516 | 2_1:+69890971 | Msa0221340:CDS |
| TCAAGAGAGAAGCAATTCGA+GGG | 0.616023 | 2_1:+69888128 | Msa0221340:CDS |
| ACAACCTGATGTAAAGAAAG+GGG | 0.622784 | 2_1:+69891066 | Msa0221340:three_prime_UTR |
| AGTGAAGGAAATGAAATCAA+AGG | 0.623538 | 2_1:+69888196 | Msa0221340:CDS |
| GAAGTTCGTGACAAAGTGCA+GGG | 0.625338 | 2_1:+69887705 | Msa0221340:CDS |
| CTTCTGTTAAGATTAAGAAG+AGG | 0.632509 | 2_1:+69887382 | Msa0221340:CDS |
| TTGTCTCCCTTCTTACACAG+TGG | 0.649739 | 2_1:-69889318 | None:intergenic |
| CGTAAGGTCTTTCTTCAGTG+AGG | 0.654872 | 2_1:-69887538 | None:intergenic |
| CTGTCACTACATCATGATCA+CGG | 0.663982 | 2_1:+69887462 | Msa0221340:CDS |
| ACTGTTGCAGTTGAGTCACA+TGG | 0.677260 | 2_1:+69889234 | Msa0221340:CDS |
| CAACCTGATGTAAAGAAAGG+GGG | 0.679614 | 2_1:+69891067 | Msa0221340:three_prime_UTR |
| GTTGTTCTAGCAGAAAGATG+CGG | 0.685845 | 2_1:-69889362 | None:intergenic |
| CTTAACAGAAACATGCAAGG+AGG | 0.699023 | 2_1:-69887430 | None:intergenic |
| AAACATGCAAGGAGGAATCG+GGG | 0.701101 | 2_1:-69887422 | None:intergenic |
| ATTAAGAAAATATATTAACG+TGG | 0.763472 | 2_1:+69888415 | Msa0221340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCTTAATTATAATATTA+TGG | + | chr2_1:69888763-69888782 | Msa0221340:intron | 10.0% |
| !! | AAAAATTGAAGAATGTATTA+AGG | + | chr2_1:69887728-69887747 | Msa0221340:CDS | 15.0% |
| !! | ATTAAGAAAATATATTAACG+TGG | + | chr2_1:69888415-69888434 | Msa0221340:CDS | 15.0% |
| !! | TATCAAAACATAAAGATAAA+AGG | - | chr2_1:69889684-69889703 | None:intergenic | 15.0% |
| !!! | AGATTTTTTTTGTTGTTAAT+TGG | + | chr2_1:69890588-69890607 | Msa0221340:intron | 15.0% |
| !! | GATACAATGAACAAATTAAT+TGG | + | chr2_1:69887957-69887976 | Msa0221340:CDS | 20.0% |
| !! | ATATGAATAAGAACATTTAC+CGG | - | chr2_1:69888450-69888469 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGTATATTGCAAA+TGG | + | chr2_1:69888825-69888844 | Msa0221340:intron | 20.0% |
| !!! | GATTTCATTGATTAATAAAC+AGG | - | chr2_1:69888918-69888937 | None:intergenic | 20.0% |
| !! | ATATCTTACATTGTATCATA+TGG | + | chr2_1:69889701-69889720 | Msa0221340:intron | 20.0% |
| !! | TTTATCCATCTTATCATTTA+TGG | + | chr2_1:69889847-69889866 | Msa0221340:intron | 20.0% |
| !!! | TGTTTTGATATGAATAAATG+TGG | - | chr2_1:69890007-69890026 | None:intergenic | 20.0% |
| !! | AAGATTATGATATTAGTTGT+TGG | + | chr2_1:69890258-69890277 | Msa0221340:intron | 20.0% |
| !! | AAATTGAACTGATATGTAAT+TGG | + | chr2_1:69890285-69890304 | Msa0221340:intron | 20.0% |
| !!! | TGTCTCTTCTATTTTTTAAA+TGG | + | chr2_1:69890529-69890548 | Msa0221340:intron | 20.0% |
| !!! | TTTTCCTCAGATTTTAAGTT+TGG | + | chr2_1:69887332-69887351 | Msa0221340:CDS | 25.0% |
| !!! | TTTCCTCAGATTTTAAGTTT+GGG | + | chr2_1:69887333-69887352 | Msa0221340:CDS | 25.0% |
| ! | TTCTGTTAAGATTAAGAAGA+GGG | + | chr2_1:69887383-69887402 | Msa0221340:CDS | 25.0% |
| ! | AATTATTTGAGGAATGCAAA+TGG | + | chr2_1:69887571-69887590 | Msa0221340:CDS | 25.0% |
| ! | TATTTGATGGAAAACATGAT+TGG | + | chr2_1:69887777-69887796 | Msa0221340:CDS | 25.0% |
| !! | AGTCATTGATAACATTGATA+AGG | + | chr2_1:69887845-69887864 | Msa0221340:CDS | 25.0% |
| ! | AAAAATCGATGAATGTACTT+TGG | + | chr2_1:69887908-69887927 | Msa0221340:CDS | 25.0% |
| ! | AGAAAAATTAGAGTCTGAAA+AGG | + | chr2_1:69887989-69888008 | Msa0221340:CDS | 25.0% |
| !!! | AATTTATTCAGCTTTGAATC+AGG | - | chr2_1:69888347-69888366 | None:intergenic | 25.0% |
| ! | TGATTCAAAGCTGAATAAAT+TGG | + | chr2_1:69888346-69888365 | Msa0221340:CDS | 25.0% |
| ! | GAGATTCATAAAATGTTCAA+GGG | - | chr2_1:69888705-69888724 | None:intergenic | 25.0% |
| ! | AGAGATTCATAAAATGTTCA+AGG | - | chr2_1:69888706-69888725 | None:intergenic | 25.0% |
| ! | TCTCCTAGATTGAAATATAT+GGG | - | chr2_1:69889020-69889039 | None:intergenic | 25.0% |
| ! | ATCTCCTAGATTGAAATATA+TGG | - | chr2_1:69889021-69889040 | None:intergenic | 25.0% |
| !! | CAGTAAATGATAGTGAAAAT+AGG | - | chr2_1:69889089-69889108 | None:intergenic | 25.0% |
| ! | AGAGAATAATGAAGATTCTT+TGG | + | chr2_1:69889467-69889486 | Msa0221340:CDS | 25.0% |
| !! | TTTCGATGAAGATGAAATTT+TGG | + | chr2_1:69889539-69889558 | Msa0221340:CDS | 25.0% |
| ! | CAAAAAAAATCTAAGCAGAT+TGG | - | chr2_1:69890580-69890599 | None:intergenic | 25.0% |
| ! | ATTTATAACCAGTGTGAAAA+TGG | - | chr2_1:69890868-69890887 | None:intergenic | 25.0% |
| ! | ATTACTATGTATTTGAACTC+AGG | + | chr2_1:69890893-69890912 | Msa0221340:intron | 25.0% |
| CTTCTGTTAAGATTAAGAAG+AGG | + | chr2_1:69887382-69887401 | Msa0221340:CDS | 30.0% | |
| TTTCTTAACAGAAACATGCA+AGG | - | chr2_1:69887436-69887455 | None:intergenic | 30.0% | |
| ATGAAAGATCATCTTCATCT+TGG | - | chr2_1:69887488-69887507 | None:intergenic | 30.0% | |
| ATAATTCTTCTAACAGCGTA+AGG | - | chr2_1:69887557-69887576 | None:intergenic | 30.0% | |
| GCTGTTAGAAGAATTATTTG+AGG | + | chr2_1:69887560-69887579 | Msa0221340:CDS | 30.0% | |
| !! | TGAATGTACTTTGGAACTTA+AGG | + | chr2_1:69887917-69887936 | Msa0221340:CDS | 30.0% |
| TCAATGAAGAATCAACTTGA+GGG | + | chr2_1:69888044-69888063 | Msa0221340:CDS | 30.0% | |
| GAAGGAGTTTCAATTAAAAG+AGG | + | chr2_1:69888157-69888176 | Msa0221340:CDS | 30.0% | |
| TTAAAAGAGGAGGAATTTGA+AGG | + | chr2_1:69888170-69888189 | Msa0221340:CDS | 30.0% | |
| AGTGAAGGAAATGAAATCAA+AGG | + | chr2_1:69888196-69888215 | Msa0221340:CDS | 30.0% | |
| TCAAAGCTGAATAAATTGGA+TGG | + | chr2_1:69888350-69888369 | Msa0221340:CDS | 30.0% | |
| TAAATTGGATGGACAAATGA+AGG | + | chr2_1:69888361-69888380 | Msa0221340:CDS | 30.0% | |
| TATAGTTTACCTGTCAACTT+AGG | - | chr2_1:69888389-69888408 | None:intergenic | 30.0% | |
| TATCACATTTGCATACAACT+TGG | - | chr2_1:69888642-69888661 | None:intergenic | 30.0% | |
| AAGTATATTGCAAATGGTGT+AGG | + | chr2_1:69888831-69888850 | Msa0221340:intron | 30.0% | |
| TCACCCATATATTTCAATCT+AGG | + | chr2_1:69889014-69889033 | Msa0221340:intron | 30.0% | |
| TGACGCTTCTATAAATATGA+GGG | + | chr2_1:69889107-69889126 | Msa0221340:intron | 30.0% | |
| GATCAATTAAGTCATACCAT+TGG | + | chr2_1:69889177-69889196 | Msa0221340:CDS | 30.0% | |
| !! | TTCTTACACAGTGGATTAAT+GGG | - | chr2_1:69889312-69889331 | None:intergenic | 30.0% |
| ATTAATCCACTGTGTAAGAA+GGG | + | chr2_1:69889312-69889331 | Msa0221340:CDS | 30.0% | |
| GAATAATGAAGATTCTTTGG+CGG | + | chr2_1:69889470-69889489 | Msa0221340:CDS | 30.0% | |
| !!! | AATTTTGGAGCTTTTTGCAT+TGG | + | chr2_1:69889554-69889573 | Msa0221340:CDS | 30.0% |
| ATGTTAATTCAGAACTGCTT+TGG | + | chr2_1:69889642-69889661 | Msa0221340:intron | 30.0% | |
| ATCCTAACTGTAGATAAGAA+TGG | - | chr2_1:69889764-69889783 | None:intergenic | 30.0% | |
| TTATGGCTATTCATGATCAA+AGG | + | chr2_1:69889791-69889810 | Msa0221340:intron | 30.0% | |
| ! | AAAATTTTCCACCCTATAGT+GGG | - | chr2_1:69889830-69889849 | None:intergenic | 30.0% |
| ! | TAAAATTTTCCACCCTATAG+TGG | - | chr2_1:69889831-69889850 | None:intergenic | 30.0% |
| ATCCATCTTATCATTTATGG+TGG | + | chr2_1:69889850-69889869 | Msa0221340:intron | 30.0% | |
| ATCCACCATAAATGATAAGA+TGG | - | chr2_1:69889855-69889874 | None:intergenic | 30.0% | |
| !!! | TTATGGTGGATGTAGTTTTT+AGG | + | chr2_1:69889864-69889883 | Msa0221340:intron | 30.0% |
| ! | GTCTAGAATAATAGGTGATT+TGG | - | chr2_1:69890041-69890060 | None:intergenic | 30.0% |
| ! | ACTGACATGTCTAGAATAAT+AGG | - | chr2_1:69890049-69890068 | None:intergenic | 30.0% |
| !!! | AAATGCCATTTTCCAATTTG+TGG | + | chr2_1:69890131-69890150 | Msa0221340:intron | 30.0% |
| AAGGGATCTGTTAAAGAAAA+TGG | + | chr2_1:69890161-69890180 | Msa0221340:intron | 30.0% | |
| TAAGAAACTAGTACAACTCT+TGG | + | chr2_1:69890200-69890219 | Msa0221340:intron | 30.0% | |
| TTGTTGAGAATCTTATCAAG+AGG | + | chr2_1:69890652-69890671 | Msa0221340:CDS | 30.0% | |
| ATTCAGTTGTGCATATAACT+TGG | + | chr2_1:69890698-69890717 | Msa0221340:CDS | 30.0% | |
| ATGTATTTGAACTCAGGATA+AGG | + | chr2_1:69890899-69890918 | Msa0221340:intron | 30.0% | |
| AGATCAAGAAATTGCTAGTT+TGG | + | chr2_1:69890926-69890945 | Msa0221340:CDS | 30.0% | |
| AACTGTTCAACAATGCATTT+CGG | + | chr2_1:69890950-69890969 | Msa0221340:CDS | 30.0% | |
| AACAACCTGATGTAAAGAAA+GGG | + | chr2_1:69891065-69891084 | Msa0221340:three_prime_UTR | 30.0% | |
| ! | TCTGATATGCCAAAGTTTTG+TGG | + | chr2_1:69887252-69887271 | Msa0221340:CDS | 35.0% |
| TCATCATGACCACAAAACTT+TGG | - | chr2_1:69887264-69887283 | None:intergenic | 35.0% | |
| TGAGGAAAACTTTGTGACAA+TGG | - | chr2_1:69887321-69887340 | None:intergenic | 35.0% | |
| GTTCCCAAACTTAAAATCTG+AGG | - | chr2_1:69887339-69887358 | None:intergenic | 35.0% | |
| TTAAGTTTGGGAACATGTAG+TGG | + | chr2_1:69887345-69887364 | Msa0221340:CDS | 35.0% | |
| CTCTTCAGTATCTCTCTTTA+TGG | - | chr2_1:69887628-69887647 | None:intergenic | 35.0% | |
| TGTATCAAGCTCTATCTCTT+TGG | - | chr2_1:69887943-69887962 | None:intergenic | 35.0% | |
| TTAGAGTCTGAAAAGGAGAA+TGG | + | chr2_1:69887996-69888015 | Msa0221340:CDS | 35.0% | |
| GTCAATGAAGAATCAACTTG+AGG | + | chr2_1:69888043-69888062 | Msa0221340:CDS | 35.0% | |
| GGAGTTTCAATTAAAAGAGG+AGG | + | chr2_1:69888160-69888179 | Msa0221340:CDS | 35.0% | |
| GAAGGAAATGAAATCAAAGG+TGG | + | chr2_1:69888199-69888218 | Msa0221340:CDS | 35.0% | |
| ! | AGCTCATTCACCTTTTCTTT+CGG | - | chr2_1:69888284-69888303 | None:intergenic | 35.0% |
| GTTGCATGTGATATGAAAAC+TGG | - | chr2_1:69888611-69888630 | None:intergenic | 35.0% | |
| !!! | ACTCGTGCGTTTTTTATTCA+TGG | + | chr2_1:69888738-69888757 | Msa0221340:intron | 35.0% |
| AACATCCTGACAAACATTGA+GGG | + | chr2_1:69888857-69888876 | Msa0221340:intron | 35.0% | |
| CTAGAAACAGTTGCACTAAT+AGG | - | chr2_1:69888894-69888913 | None:intergenic | 35.0% | |
| ATGAAATCAAACACTGTCTC+TGG | + | chr2_1:69888930-69888949 | Msa0221340:intron | 35.0% | |
| CTGACGCTTCTATAAATATG+AGG | + | chr2_1:69889106-69889125 | Msa0221340:intron | 35.0% | |
| CAATTAAGTCATACCATTGG+TGG | + | chr2_1:69889180-69889199 | Msa0221340:CDS | 35.0% | |
| !! | CTTCTTACACAGTGGATTAA+TGG | - | chr2_1:69889313-69889332 | None:intergenic | 35.0% |
| CATTAATCCACTGTGTAAGA+AGG | + | chr2_1:69889311-69889330 | Msa0221340:CDS | 35.0% | |
| CTCACACAATCTTCAATCTT+CGG | - | chr2_1:69889402-69889421 | None:intergenic | 35.0% | |
| ! | AACTTTATTTGCAAAGCCCA+GGG | - | chr2_1:69889616-69889635 | None:intergenic | 35.0% |
| ! | AAACTTTATTTGCAAAGCCC+AGG | - | chr2_1:69889617-69889636 | None:intergenic | 35.0% |
| GGCTTTGCAAATAAAGTTTC+TGG | + | chr2_1:69889618-69889637 | Msa0221340:CDS | 35.0% | |
| AACTGTAGATAAGAATGGCA+TGG | - | chr2_1:69889759-69889778 | None:intergenic | 35.0% | |
| TGCCATTCTTATCTACAGTT+AGG | + | chr2_1:69889759-69889778 | Msa0221340:intron | 35.0% | |
| TATCTACAGTTAGGATGAGA+TGG | + | chr2_1:69889768-69889787 | Msa0221340:intron | 35.0% | |
| ACTAGTAAGAGAATGTCAGT+TGG | + | chr2_1:69890083-69890102 | Msa0221340:intron | 35.0% | |
| TTGCTCCACAAATTGGAAAA+TGG | - | chr2_1:69890139-69890158 | None:intergenic | 35.0% | |
| TCCAATTTGTGGAGCAAAAA+AGG | + | chr2_1:69890142-69890161 | Msa0221340:intron | 35.0% | |
| CCAATTTGTGGAGCAAAAAA+GGG | + | chr2_1:69890143-69890162 | Msa0221340:intron | 35.0% | |
| ! | TACATATTTTCTGCCTGTTC+TGG | + | chr2_1:69890611-69890630 | Msa0221340:intron | 35.0% |
| GATTCTCAACAAAATCTGCA+AGG | - | chr2_1:69890644-69890663 | None:intergenic | 35.0% | |
| ! | CACAAATCAGTTTGGCATTT+TGG | - | chr2_1:69890764-69890783 | None:intergenic | 35.0% |
| AACCAACTCCATTGAAATCA+AGG | + | chr2_1:69890800-69890819 | Msa0221340:CDS | 35.0% | |
| AACCTTGATTTCAATGGAGT+TGG | - | chr2_1:69890805-69890824 | None:intergenic | 35.0% | |
| ! | CAAACATTCCATTTTCACAC+TGG | + | chr2_1:69890857-69890876 | Msa0221340:intron | 35.0% |
| ! | CTTTTGCTACAAGCACATAA+AGG | + | chr2_1:69891023-69891042 | Msa0221340:CDS | 35.0% |
| GAACAACCTGATGTAAAGAA+AGG | + | chr2_1:69891064-69891083 | Msa0221340:three_prime_UTR | 35.0% | |
| ACAACCTGATGTAAAGAAAG+GGG | + | chr2_1:69891066-69891085 | Msa0221340:three_prime_UTR | 35.0% | |
| AGAAACATGCAAGGAGGAAT+CGG | - | chr2_1:69887427-69887446 | None:intergenic | 40.0% | |
| CTTAACAGAAACATGCAAGG+AGG | - | chr2_1:69887433-69887452 | None:intergenic | 40.0% | |
| CTGTCACTACATCATGATCA+CGG | + | chr2_1:69887462-69887481 | Msa0221340:CDS | 40.0% | |
| ACATTGATAAGGACCGTGAA+AGG | + | chr2_1:69887856-69887875 | Msa0221340:CDS | 40.0% | |
| TCGTGCTGAAATGAAGGAAT+TGG | + | chr2_1:69888019-69888038 | Msa0221340:CDS | 40.0% | |
| TGAGTCAGAGAAGAAGAACT+TGG | + | chr2_1:69888082-69888101 | Msa0221340:CDS | 40.0% | |
| TCAGAGAAGAAGAACTTGGA+AGG | + | chr2_1:69888086-69888105 | Msa0221340:CDS | 40.0% | |
| GAACTTGGAAGGACGAATAA+AGG | + | chr2_1:69888097-69888116 | Msa0221340:CDS | 40.0% | |
| ATCAAGAGAGAAGCAATTCG+AGG | + | chr2_1:69888127-69888146 | Msa0221340:CDS | 40.0% | |
| TCAAGAGAGAAGCAATTCGA+GGG | + | chr2_1:69888128-69888147 | Msa0221340:CDS | 40.0% | |
| GGAAATGAAATCAAAGGTGG+AGG | + | chr2_1:69888202-69888221 | Msa0221340:CDS | 40.0% | |
| GGAACTCGAAGAACAAGTTA+AGG | + | chr2_1:69888223-69888242 | Msa0221340:CDS | 40.0% | |
| TGAAGAACGTCCGAAAGAAA+AGG | + | chr2_1:69888271-69888290 | Msa0221340:CDS | 40.0% | |
| AAGAAAAGGTGAATGAGCTC+AGG | + | chr2_1:69888285-69888304 | Msa0221340:CDS | 40.0% | |
| ATTAACGTGGAGCAAGAATC+CGG | + | chr2_1:69888428-69888447 | Msa0221340:CDS | 40.0% | |
| CAACATCCTGACAAACATTG+AGG | + | chr2_1:69888856-69888875 | Msa0221340:intron | 40.0% | |
| ACATCCTGACAAACATTGAG+GGG | + | chr2_1:69888858-69888877 | Msa0221340:intron | 40.0% | |
| TGTCTCTGGTGATTCAGTTA+AGG | + | chr2_1:69888944-69888963 | Msa0221340:intron | 40.0% | |
| ATACGCAGTTGCATCTTACA+TGG | + | chr2_1:69889152-69889171 | Msa0221340:intron | 40.0% | |
| GTTGTTCTAGCAGAAAGATG+CGG | - | chr2_1:69889365-69889384 | None:intergenic | 40.0% | |
| CAGTTAGGATGAGATGGTTA+TGG | + | chr2_1:69889774-69889793 | Msa0221340:intron | 40.0% | |
| !! | CCCTATAGTGGGCTAATAAT+CGG | - | chr2_1:69889819-69889838 | None:intergenic | 40.0% |
| CCGATTATTAGCCCACTATA+GGG | + | chr2_1:69889816-69889835 | Msa0221340:intron | 40.0% | |
| ATTATTAGCCCACTATAGGG+TGG | + | chr2_1:69889819-69889838 | Msa0221340:intron | 40.0% | |
| AAAAGCAGGGAAGGAAAACT+TGG | - | chr2_1:69889976-69889995 | None:intergenic | 40.0% | |
| !! | GTTTTCCTTCCCTGCTTTTA+TGG | + | chr2_1:69889977-69889996 | Msa0221340:intron | 40.0% |
| TGTGGTGATCCATAAAAGCA+GGG | - | chr2_1:69889989-69890008 | None:intergenic | 40.0% | |
| ATGTGGTGATCCATAAAAGC+AGG | - | chr2_1:69889990-69890009 | None:intergenic | 40.0% | |
| !!! | CCCTTTTTTGCTCCACAAAT+TGG | - | chr2_1:69890146-69890165 | None:intergenic | 40.0% |
| ACTGCTCTCACAAATCAGTT+TGG | - | chr2_1:69890772-69890791 | None:intergenic | 40.0% | |
| CAGCAGAACCTTGATTTCAA+TGG | - | chr2_1:69890811-69890830 | None:intergenic | 40.0% | |
| !!! | GGTTCTGCTGCTTTTCTTAT+TGG | + | chr2_1:69890821-69890840 | Msa0221340:intron | 40.0% |
| CAACCTGATGTAAAGAAAGG+GGG | + | chr2_1:69891067-69891086 | Msa0221340:three_prime_UTR | 40.0% | |
| TTACCCCCTTTCTTTACATC+AGG | - | chr2_1:69891073-69891092 | None:intergenic | 40.0% | |
| GATGTAAAGAAAGGGGGTAA+TGG | + | chr2_1:69891073-69891092 | Msa0221340:three_prime_UTR | 40.0% | |
| !! | AAGAAAGGGGGTAATGGAAA+CGG | + | chr2_1:69891079-69891098 | Msa0221340:three_prime_UTR | 40.0% |
| AAACATGCAAGGAGGAATCG+GGG | - | chr2_1:69887425-69887444 | None:intergenic | 45.0% | |
| GAAACATGCAAGGAGGAATC+GGG | - | chr2_1:69887426-69887445 | None:intergenic | 45.0% | |
| CGTAAGGTCTTTCTTCAGTG+AGG | - | chr2_1:69887541-69887560 | None:intergenic | 45.0% | |
| TGAAGTTCGTGACAAAGTGC+AGG | + | chr2_1:69887704-69887723 | Msa0221340:CDS | 45.0% | |
| GAAGTTCGTGACAAAGTGCA+GGG | + | chr2_1:69887705-69887724 | Msa0221340:CDS | 45.0% | |
| CGAAGAGCAGCTCTATTTGA+TGG | + | chr2_1:69887764-69887783 | Msa0221340:CDS | 45.0% | |
| TGATAAGGACCGTGAAAGGA+AGG | + | chr2_1:69887860-69887879 | Msa0221340:CDS | 45.0% | |
| GTTCCTCTTCCTTCCTTTCA+CGG | - | chr2_1:69887872-69887891 | None:intergenic | 45.0% | |
| GAATGGTCGTGCTGAAATGA+AGG | + | chr2_1:69888013-69888032 | Msa0221340:CDS | 45.0% | |
| GAAGAATCAACTTGAGGGTC+AGG | + | chr2_1:69888049-69888068 | Msa0221340:CDS | 45.0% | |
| GCAATTCGAGGGACAAATGA+AGG | + | chr2_1:69888139-69888158 | Msa0221340:CDS | 45.0% | |
| GGAATTTGAAGGCAGAGTGA+AGG | + | chr2_1:69888181-69888200 | Msa0221340:CDS | 45.0% | |
| GGAGCTCGAATCAAAGAAGA+AGG | + | chr2_1:69888244-69888263 | Msa0221340:CDS | 45.0% | |
| GCTGTTTGAAAGACAAGCCA+AGG | + | chr2_1:69888319-69888338 | Msa0221340:CDS | 45.0% | |
| !! | CAGCTTTGAATCAGGATCCT+TGG | - | chr2_1:69888339-69888358 | None:intergenic | 45.0% |
| ! | ATGAAGGAGCCTAAGTTGAC+AGG | + | chr2_1:69888377-69888396 | Msa0221340:CDS | 45.0% |
| AATGCCCCTCAATGTTTGTC+AGG | - | chr2_1:69888865-69888884 | None:intergenic | 45.0% | |
| ! | CTGCAAACTTGTTCCACCAA+TGG | - | chr2_1:69889196-69889215 | None:intergenic | 45.0% |
| TGGTGGAACAAGTTTGCAGT+TGG | + | chr2_1:69889197-69889216 | Msa0221340:CDS | 45.0% | |
| ACTGTTGCAGTTGAGTCACA+TGG | + | chr2_1:69889234-69889253 | Msa0221340:CDS | 45.0% | |
| TTGTCTCCCTTCTTACACAG+TGG | - | chr2_1:69889321-69889340 | None:intergenic | 45.0% | |
| ! | TTGTGTGAGAGAAGAAGCAC+TGG | + | chr2_1:69889413-69889432 | Msa0221340:CDS | 45.0% |
| GAAGATTCTTTGGCGGTTCT+TGG | + | chr2_1:69889477-69889496 | Msa0221340:CDS | 45.0% | |
| TGCTCAGCACAAGATAGCTA+TGG | + | chr2_1:69889578-69889597 | Msa0221340:CDS | 45.0% | |
| TATGGAGATGTTTCAGACCC+TGG | + | chr2_1:69889596-69889615 | Msa0221340:CDS | 45.0% | |
| ATGGAGATGTTTCAGACCCT+GGG | + | chr2_1:69889597-69889616 | Msa0221340:CDS | 45.0% | |
| GCCGATTATTAGCCCACTAT+AGG | + | chr2_1:69889815-69889834 | Msa0221340:intron | 45.0% | |
| GTGATCCATAAAAGCAGGGA+AGG | - | chr2_1:69889985-69890004 | None:intergenic | 45.0% | |
| GGATTGCAAACTACAGTCTG+AGG | + | chr2_1:69890971-69890990 | Msa0221340:CDS | 45.0% | |
| ! | ACAGTCTGAGGTGCTTGATA+AGG | + | chr2_1:69890983-69891002 | Msa0221340:CDS | 45.0% |
| ! | GAGGTGCTTGATAAGGAGAT+TGG | + | chr2_1:69890990-69891009 | Msa0221340:CDS | 45.0% |
| AGAGAGAGAGAGAGAGCTGT+GGG | - | chr2_1:69890326-69890345 | None:intergenic | 50.0% | |
| AGAGCGCAAGCTAGAGCTCA+AGG | + | chr2_1:69887800-69887819 | Msa0221340:CDS | 55.0% | |
| GGACCGTGAAAGGAAGGAAG+AGG | + | chr2_1:69887866-69887885 | Msa0221340:CDS | 55.0% | |
| AGAGAGAGAGAGAGCTGTGG+GGG | - | chr2_1:69890324-69890343 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGCTGTG+GGG | - | chr2_1:69890325-69890344 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGCTG+TGG | - | chr2_1:69890327-69890346 | None:intergenic | 55.0% | |
| GCAAGGTGCAAGACCAGAAC+AGG | - | chr2_1:69890627-69890646 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 69887237 | 69891124 | 69887237 | ID=Msa0221340;Name=Msa0221340 |
| chr2_1 | mRNA | 69887237 | 69891124 | 69887237 | ID=Msa0221340-mRNA-1;Parent=Msa0221340;Name=Msa0221340-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.66|0.5|1|1|1|4|72|667 |
| chr2_1 | exon | 69887237 | 69888449 | 69887237 | ID=Msa0221340-mRNA-1:exon:19897;Parent=Msa0221340-mRNA-1 |
| chr2_1 | exon | 69889160 | 69889639 | 69889160 | ID=Msa0221340-mRNA-1:exon:19898;Parent=Msa0221340-mRNA-1 |
| chr2_1 | exon | 69890649 | 69890821 | 69890649 | ID=Msa0221340-mRNA-1:exon:19899;Parent=Msa0221340-mRNA-1 |
| chr2_1 | exon | 69890915 | 69891124 | 69890915 | ID=Msa0221340-mRNA-1:exon:19900;Parent=Msa0221340-mRNA-1 |
| chr2_1 | CDS | 69887237 | 69888449 | 69887237 | ID=Msa0221340-mRNA-1:cds;Parent=Msa0221340-mRNA-1 |
| chr2_1 | CDS | 69889160 | 69889639 | 69889160 | ID=Msa0221340-mRNA-1:cds;Parent=Msa0221340-mRNA-1 |
| chr2_1 | CDS | 69890649 | 69890821 | 69890649 | ID=Msa0221340-mRNA-1:cds;Parent=Msa0221340-mRNA-1 |
| chr2_1 | CDS | 69890915 | 69891052 | 69890915 | ID=Msa0221340-mRNA-1:cds;Parent=Msa0221340-mRNA-1 |
| chr2_1 | three_prime_UTR | 69891053 | 69891124 | 69891053 | ID=Msa0221340-mRNA-1:three_prime_utr;Parent=Msa0221340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
