AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215320 MtrunA17_Chr2g0316201 91.617 167 0 1 1 167 1 153 4.58e-108 305
Msa0215320 MtrunA17_Chr2g0316211 89.222 167 4 1 1 167 1 153 5.30e-105 297
Msa0215320 MtrunA17_Chr5g0432831 45.283 159 73 1 8 166 4 148 2.53e-44 143
Msa0215320 MtrunA17_Chr3g0108261 44.654 159 74 1 8 166 4 148 1.08e-43 141
Msa0215320 MtrunA17_Chr7g0275361 44.654 159 74 1 8 166 4 148 1.65e-43 141
Msa0215320 MtrunA17_Chr8g0369311 45.283 159 73 1 8 166 60 204 3.23e-43 142
Msa0215320 MtrunA17_Chr1g0154011 43.949 157 74 1 8 164 4 146 9.34e-43 139
Msa0215320 MtrunA17_Chr4g0037011 43.396 159 76 1 8 166 4 148 2.12e-42 138
Msa0215320 MtrunA17_Chr3g0131871 45.070 142 63 2 24 164 22 149 1.79e-36 124
Msa0215320 MtrunA17_Chr4g0060351 36.424 151 82 1 8 158 7 143 2.98e-34 117
Msa0215320 MtrunA17_Chr8g0362321 36.424 151 82 1 8 158 7 143 3.32e-34 117
Msa0215320 MtrunA17_Chr4g0038891 42.254 142 68 1 8 149 35 162 1.91e-33 116
Msa0215320 MtrunA17_Chr5g0396451 41.549 142 69 1 8 149 35 162 1.54e-32 114
Msa0215320 MtrunA17_Chr8g0378601 36.306 157 86 1 8 164 25 167 4.11e-31 110
Msa0215320 MtrunA17_Chr3g0139901 36.875 160 83 4 9 164 7 152 1.26e-29 106
Msa0215320 MtrunA17_Chr1g0199951 39.456 147 74 2 4 149 40 172 2.92e-28 103
Msa0215320 MtrunA17_Chr7g0254701 34.337 166 91 2 3 164 4 155 1.86e-24 95.9
Msa0215320 MtrunA17_Chr8g0348701 34.815 135 72 3 32 164 27 147 1.57e-22 89.0
Msa0215320 MtrunA17_Chr8g0387131 34.074 135 73 3 32 164 27 147 5.35e-21 84.7
Msa0215320 MtrunA17_Chr4g0059291 34.815 135 72 3 32 164 27 147 5.66e-21 84.7
Msa0215320 MtrunA17_Chr4g0031181 30.345 145 73 3 21 151 20 150 1.45e-19 80.5
Msa0215320 MtrunA17_Chr5g0403591 41.176 85 50 0 64 148 73 157 3.82e-18 77.4
Msa0215320 MtrunA17_Chr2g0328001 30.496 141 70 3 20 146 19 145 3.89e-18 77.0
Msa0215320 MtrunA17_Chr4g0053191 32.743 113 60 2 26 136 30 128 2.59e-15 69.3
Msa0215320 MtrunA17_Chr5g0401831 32.353 102 67 1 66 165 56 157 1.14e-14 67.8
Msa0215320 MtrunA17_Chr8g0372391 48.214 56 28 1 67 121 62 117 1.45e-11 59.3
Msa0215320 MtrunA17_Chr5g0404931 46.429 56 29 1 67 121 62 117 8.10e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215320 AT1G78870.2 91.018 167 1 1 1 167 1 153 1.81e-107 303
Msa0215320 AT1G16890.2 91.018 167 1 1 1 167 1 153 2.57e-107 303
Msa0215320 AT1G16890.3 85.795 176 2 2 1 167 1 162 1.47e-103 294
Msa0215320 AT1G78870.1 89.552 134 1 1 34 167 1 121 1.32e-83 242
Msa0215320 AT1G16890.1 89.552 134 0 1 34 167 1 120 3.94e-83 241
Msa0215320 AT1G78870.4 88.806 134 1 1 34 167 1 120 1.39e-82 239
Msa0215320 AT1G78870.3 88.525 122 0 1 1 122 1 108 5.37e-73 215
Msa0215320 AT5G41700.5 45.283 159 73 1 8 166 4 148 2.21e-44 144
Msa0215320 AT5G41700.2 45.283 159 73 1 8 166 4 148 2.21e-44 144
Msa0215320 AT5G41700.1 45.283 159 73 1 8 166 4 148 2.21e-44 144
Msa0215320 AT3G08690.2 45.283 159 73 1 8 166 4 148 2.39e-44 144
Msa0215320 AT3G08690.1 45.283 159 73 1 8 166 4 148 2.39e-44 144
Msa0215320 AT1G64230.2 44.654 159 74 1 8 166 4 148 2.44e-44 144
Msa0215320 AT1G64230.1 44.654 159 74 1 8 166 4 148 2.44e-44 144
Msa0215320 AT5G53300.2 44.654 159 74 1 8 166 4 148 6.65e-44 142
Msa0215320 AT5G53300.4 44.654 159 74 1 8 166 4 148 6.65e-44 142
Msa0215320 AT5G53300.1 44.654 159 74 1 8 166 4 148 6.65e-44 142
Msa0215320 AT4G27960.1 44.654 159 74 1 8 166 4 148 1.02e-43 142
Msa0215320 AT2G16740.1 45.223 157 72 1 8 164 4 146 2.63e-43 141
Msa0215320 AT4G27960.2 44.654 159 74 1 8 166 34 178 3.62e-43 141
Msa0215320 AT5G56150.1 44.654 159 74 1 8 166 4 148 1.81e-42 139
Msa0215320 AT5G41700.4 45.000 160 73 2 8 166 4 149 2.47e-42 138
Msa0215320 AT1G64230.3 42.262 168 74 2 8 166 4 157 3.16e-41 136
Msa0215320 AT1G64230.5 42.073 164 76 2 8 166 41 190 1.97e-38 130
Msa0215320 AT1G64230.4 42.073 164 76 2 8 166 41 190 1.97e-38 130
Msa0215320 AT3G08700.2 41.875 160 78 2 8 166 4 149 2.30e-38 128
Msa0215320 AT3G08700.1 41.875 160 78 2 8 166 4 149 2.30e-38 128
Msa0215320 AT5G50870.1 42.405 158 75 3 9 164 6 149 4.93e-37 126
Msa0215320 AT5G62540.1 38.889 144 74 1 8 151 7 136 7.28e-34 117
Msa0215320 AT5G50870.2 39.645 169 75 4 9 164 6 160 1.39e-33 118
Msa0215320 AT2G02760.1 35.762 151 83 1 8 158 7 143 2.00e-33 116
Msa0215320 AT2G02760.2 35.762 151 83 1 8 158 7 143 2.00e-33 116
Msa0215320 AT2G02760.4 35.762 151 83 1 8 158 7 143 2.00e-33 116
Msa0215320 AT2G02760.3 35.762 151 83 1 8 158 7 143 2.00e-33 116
Msa0215320 AT1G14400.1 36.806 144 77 1 8 151 7 136 2.69e-33 115
Msa0215320 AT1G14400.2 36.806 144 77 1 8 151 7 136 2.69e-33 115
Msa0215320 AT3G20060.1 40.141 142 71 1 8 149 39 166 2.08e-32 114
Msa0215320 AT3G13550.1 36.943 157 85 1 8 164 39 181 1.14e-31 112
Msa0215320 AT3G20060.2 41.353 133 64 1 17 149 3 121 1.97e-31 110
Msa0215320 AT5G25760.1 38.125 160 81 4 9 164 7 152 8.32e-30 107
Msa0215320 AT5G25760.2 38.125 160 81 4 9 164 7 152 8.32e-30 107
Msa0215320 AT1G50490.1 40.141 142 71 1 8 149 38 165 2.40e-28 103
Msa0215320 AT1G36340.2 39.241 158 81 2 8 165 11 153 2.41e-28 103
Msa0215320 AT1G36340.1 39.241 158 81 2 8 165 11 153 2.41e-28 103
Msa0215320 AT5G41700.3 42.373 118 54 1 8 125 4 107 1.56e-27 100
Msa0215320 AT5G53300.3 42.478 113 51 1 8 120 4 102 6.98e-27 98.2
Msa0215320 AT3G24515.1 39.535 172 77 4 6 164 7 164 7.40e-27 104
Msa0215320 AT3G13550.2 38.095 126 64 1 8 133 39 150 4.01e-26 98.2
Msa0215320 AT5G56150.2 42.105 114 52 1 8 121 4 103 6.59e-26 95.5
Msa0215320 AT3G24515.3 49.515 103 48 1 66 164 87 189 1.97e-25 101
Msa0215320 AT5G05080.2 31.737 167 96 2 2 164 3 155 1.86e-23 93.2
Msa0215320 AT5G05080.3 31.737 167 96 2 2 164 3 155 1.86e-23 93.2
Msa0215320 AT5G05080.1 31.737 167 96 2 2 164 3 155 1.86e-23 93.2
Msa0215320 AT5G05080.4 31.737 167 96 2 2 164 3 155 1.86e-23 93.2
Msa0215320 AT1G63800.2 36.296 135 70 3 32 164 12 132 1.43e-21 86.3
Msa0215320 AT1G63800.1 36.296 135 70 3 32 164 27 147 1.81e-21 86.3
Msa0215320 AT5G41340.1 36.296 135 70 3 32 164 27 147 3.67e-21 85.5
Msa0215320 AT2G46030.5 36.296 135 70 3 32 164 27 147 7.08e-21 84.7
Msa0215320 AT2G46030.1 36.296 135 70 3 32 164 27 147 7.08e-21 84.7
Msa0215320 AT3G55380.1 30.303 165 87 3 1 151 1 151 7.60e-21 84.3
Msa0215320 AT2G46030.4 36.296 135 70 3 32 164 30 150 9.56e-21 84.3
Msa0215320 AT2G46030.2 36.296 135 70 3 32 164 30 150 9.56e-21 84.3
Msa0215320 AT5G41340.2 39.450 109 64 2 58 164 4 112 2.06e-20 82.8
Msa0215320 AT2G46030.3 36.296 135 70 3 32 164 99 219 3.97e-20 84.3
Msa0215320 AT2G32790.1 38.571 140 68 3 29 166 54 177 1.61e-19 81.3
Msa0215320 AT5G59300.1 30.137 146 74 3 20 151 19 150 6.47e-19 79.3
Msa0215320 AT3G46460.1 30.822 146 73 3 20 151 19 150 9.70e-19 79.0
Msa0215320 AT4G36800.2 39.000 100 58 1 49 148 62 158 1.12e-18 79.0
Msa0215320 AT4G36800.1 39.000 100 58 1 49 148 62 158 1.12e-18 79.0
Msa0215320 AT2G18600.1 41.176 85 50 0 64 148 75 159 4.54e-18 77.4
Msa0215320 AT2G18600.2 41.176 85 50 0 64 148 75 159 4.54e-18 77.4
Msa0215320 AT3G46460.3 32.323 99 54 1 66 151 10 108 1.21e-15 69.7
Msa0215320 AT3G46460.2 32.323 99 54 1 66 151 10 108 1.21e-15 69.7
Msa0215320 AT3G57870.1 30.435 138 85 2 1 136 1 129 3.05e-15 69.3
Msa0215320 AT3G55380.2 25.628 199 86 4 1 151 1 185 1.10e-14 68.9
Msa0215320 AT1G45050.1 46.429 56 29 1 67 121 62 117 3.36e-11 58.9

Find 85 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTGCTAAATGTAATTT+TGG 0.131706 2_1:+60472884 Msa0215320:three_prime_UTR
GATTCACACTACCCGTTTAA+AGG 0.192906 2_1:-60472992 None:intergenic
GACAATTTGGTGGATACTTT+TGG 0.228908 2_1:+60472652 Msa0215320:exon
GCCAGCGGTGCTTGACAATT+TGG 0.257970 2_1:+60472639 Msa0215320:exon
AGGTTACTGTTAGCCATTAT+TGG 0.261010 2_1:-60467694 None:intergenic
TGTCCACATTATCATGGATT+TGG 0.286310 2_1:+60472948 Msa0215320:three_prime_UTR
AGGTGTAAAACCAAGTTGTT+AGG 0.291649 2_1:-60468934 None:intergenic
TTGGAACTTGTATGAATATA+TGG 0.304645 2_1:+60472825 Msa0215320:three_prime_UTR
ATCTTCCGGAAGCCTTCTAT+TGG 0.305818 2_1:+60472806 Msa0215320:three_prime_UTR
TTCATACAAGTTCCAATAGA+AGG 0.333207 2_1:-60472818 None:intergenic
ATATAATCTGGTCCACTCTT+TGG 0.343468 2_1:-60472616 None:intergenic
CGGAAGCTATAAGAGGAAAA+TGG 0.343675 2_1:-60472762 None:intergenic
TTCTCAGAAAGAGGATCATC+TGG 0.366062 2_1:-60472429 None:intergenic
GGTTACTGTTAGCCATTATT+GGG 0.381254 2_1:-60467693 None:intergenic
GCAGCCATTGGATATTCTTC+AGG 0.381683 2_1:-60470171 None:intergenic
TCGATTGCAAAGTACGCAAT+AGG 0.382963 2_1:-60467670 None:intergenic
CTTTGCAATCGACCCAATAA+TGG 0.389615 2_1:+60467681 Msa0215320:exon
ATTCACACTACCCGTTTAAA+GGG 0.395075 2_1:-60472991 None:intergenic
GTTTATTGCTTTCTATCTTC+CGG 0.395362 2_1:+60472792 Msa0215320:three_prime_UTR
AGTGAAGAGTACCCTTTAAA+CGG 0.409243 2_1:+60472980 Msa0215320:three_prime_UTR
CGATTGCAAAGTACGCAATA+GGG 0.413313 2_1:-60467669 None:intergenic
TTGGTTTGTCCACATTATCA+TGG 0.417818 2_1:+60472942 Msa0215320:three_prime_UTR
AACACAAAATACGCATTTCA+AGG 0.430640 2_1:-60468954 None:intergenic
GAAGGGGATGCACTAATTCC+AGG 0.430653 2_1:-60468838 None:intergenic
AAGCATACCTTGTCAATGTT+AGG 0.438243 2_1:-60471732 None:intergenic
GAAAGCAATAAACATGTAAC+CGG 0.440500 2_1:-60472782 None:intergenic
CTGAGAACATTGCTAAGCAT+TGG 0.441903 2_1:+60472445 Msa0215320:CDS
GAAATTCGATGCAGCTTGGC+AGG 0.451169 2_1:+60471811 Msa0215320:intron
GAAAGAGGATCATCTGGGTT+TGG 0.452444 2_1:-60472423 None:intergenic
TATTTCAATGTGATGATCCT+TGG 0.456529 2_1:+60468877 Msa0215320:CDS
TTACATTTAGCAGTTGAAGA+TGG 0.460693 2_1:-60472878 None:intergenic
ACCAAATTGTCAAGCACCGC+TGG 0.462398 2_1:-60472640 None:intergenic
TTCAATAATATTCTCAGCCA+TGG 0.467955 2_1:+60473040 Msa0215320:three_prime_UTR
CTTCATAAGGAGACTGAGTT+GGG 0.469912 2_1:-60468900 None:intergenic
TGGAATTAGTGCATCCCCTT+CGG 0.472941 2_1:+60468840 Msa0215320:CDS
AGCACCGCTGGCATATAATC+TGG 0.476499 2_1:-60472628 None:intergenic
GTGAAGAGTACCCTTTAAAC+GGG 0.477315 2_1:+60472981 Msa0215320:three_prime_UTR
CAGCGTTTGCTCAGTGAGCC+AGG 0.478486 2_1:+60468164 Msa0215320:CDS
GAGGCTGAGGCTGTTGAGAC+AGG 0.486241 2_1:+60472477 Msa0215320:CDS
TATTAACTATCAAATTGAAA+TGG 0.486332 2_1:+60472704 Msa0215320:three_prime_UTR
AGTACCTTTGGAGCAGCCAT+TGG 0.489227 2_1:-60470183 None:intergenic
TTGGTCTCAAATAACAATAG+TGG 0.494957 2_1:+60472671 Msa0215320:three_prime_UTR
AGTACGCAATAGGGGTTTGA+GGG 0.495981 2_1:-60467660 None:intergenic
TTTGACTTCTCTGAGGTAAG+TGG 0.500849 2_1:-60473120 None:intergenic
AAGTACGCAATAGGGGTTTG+AGG 0.506890 2_1:-60467661 None:intergenic
AAGTTCCAATAGAAGGCTTC+CGG 0.507573 2_1:-60472811 None:intergenic
TTGATATTCTGAAAGATAAG+TGG 0.507902 2_1:+60471841 Msa0215320:CDS
TTGACTTCTCTGAGGTAAGT+GGG 0.508535 2_1:-60473119 None:intergenic
GGGTCATCACTACCTTCATA+AGG 0.510970 2_1:-60468913 None:intergenic
CCTTGATGATTCTTCGAGGA+AGG 0.515767 2_1:-60467714 None:intergenic
ATGTAACCGGAAGCTATAAG+AGG 0.517239 2_1:-60472769 None:intergenic
GGATTATTAAAATTGATTGA+AGG 0.522545 2_1:-60473098 None:intergenic
GCGTAGTAGAATTTCACAAA+GGG 0.526186 2_1:-60467594 None:intergenic
ATATCCAATGGCTGCTCCAA+AGG 0.528645 2_1:+60470179 Msa0215320:CDS
TTAGCAATGTTCTCAGAAAG+AGG 0.528946 2_1:-60472438 None:intergenic
GGTGTAAAACCAAGTTGTTA+GGG 0.531620 2_1:-60468933 None:intergenic
AAAGTACAGTGCGAATCTGA+AGG 0.534958 2_1:-60471872 None:intergenic
CCTTCATAAGGAGACTGAGT+TGG 0.538189 2_1:-60468901 None:intergenic
CCAACTCAGTCTCCTTATGA+AGG 0.539979 2_1:+60468901 Msa0215320:CDS
GAGGAATTGTCTAAACTATG+TGG 0.544191 2_1:+60472736 Msa0215320:three_prime_UTR
CGAACCTTGATGATTCTTCG+AGG 0.552069 2_1:-60467718 None:intergenic
TTAAATCTGCAGCCAAAGAG+TGG 0.559027 2_1:+60472604 Msa0215320:intron
AAGGAGACTGAGTTGGGCCA+AGG 0.563036 2_1:-60468894 None:intergenic
TTGGAAATCTAACGAGGCTG+AGG 0.570066 2_1:+60472464 Msa0215320:CDS
TTTGCCTGAAGAATATCCAA+TGG 0.577448 2_1:+60470167 Msa0215320:CDS
AGCGGTGCTTGACAATTTGG+TGG 0.581720 2_1:+60472642 Msa0215320:exon
ACAGTGCGAATCTGAAGGGC+GGG 0.582860 2_1:-60471867 None:intergenic
TAGTGATGACCCTAACAACT+TGG 0.587637 2_1:+60468924 Msa0215320:CDS
TATGTGTCAAATTTAAAACA+TGG 0.589636 2_1:+60472854 Msa0215320:three_prime_UTR
ACCGCATATTGTCTTCCGAA+GGG 0.591021 2_1:-60468855 None:intergenic
CCTTCCTCGAAGAATCATCA+AGG 0.595281 2_1:+60467714 Msa0215320:CDS
CGCGTAGTAGAATTTCACAA+AGG 0.607767 2_1:-60467595 None:intergenic
GATTGCAAAGTACGCAATAG+GGG 0.610323 2_1:-60467668 None:intergenic
TCTCAGAAAGAGGATCATCT+GGG 0.624579 2_1:-60472428 None:intergenic
AAGTACAGTGCGAATCTGAA+GGG 0.628795 2_1:-60471871 None:intergenic
TACCGCATATTGTCTTCCGA+AGG 0.629625 2_1:-60468856 None:intergenic
AAGCCAAATCCATGATAATG+TGG 0.631625 2_1:-60472951 None:intergenic
CCCCTTCGGAAGACAATATG+CGG 0.635414 2_1:+60468854 Msa0215320:CDS
TGATAATGTGGACAAACCAA+AGG 0.635774 2_1:-60472939 None:intergenic
TACAGTGCGAATCTGAAGGG+CGG 0.640507 2_1:-60471868 None:intergenic
CCGCATATTGTCTTCCGAAG+GGG 0.658062 2_1:-60468854 None:intergenic
TAATGGATTTGACTTCTCTG+AGG 0.671845 2_1:-60473127 None:intergenic
TGGACCAGATTATATGCCAG+CGG 0.687231 2_1:+60472624 Msa0215320:CDS
ATATCATCCTAACATTGACA+AGG 0.690087 2_1:+60471725 Msa0215320:CDS
TAAGCATTGGAAATCTAACG+AGG 0.750907 2_1:+60472458 Msa0215320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTACATGTGAAATTA+GGG + chr2_1:60467896-60467915 Msa0215320:intron 15.0%
!!! TAGTTTTGAATTGTTTTTAT+TGG + chr2_1:60468072-60468091 Msa0215320:intron 15.0%
!! TATGATATGATAACAATAAA+GGG - chr2_1:60468443-60468462 None:intergenic 15.0%
!! ATATGATATGATAACAATAA+AGG - chr2_1:60468444-60468463 None:intergenic 15.0%
!!! AAATGGGATATTAATTATTT+TGG + chr2_1:60468989-60469008 Msa0215320:intron 15.0%
!!! AATGGGATATTAATTATTTT+GGG + chr2_1:60468990-60469009 Msa0215320:intron 15.0%
!! TAATGTATTATAGATTTGTA+TGG + chr2_1:60469693-60469712 Msa0215320:intron 15.0%
!!! TTTTTAAGAGTTTTAGAAAA+AGG + chr2_1:60470340-60470359 Msa0215320:intron 15.0%
!! AATAAGTCAATAAATAGTTA+AGG + chr2_1:60470464-60470483 Msa0215320:intron 15.0%
!! ATAAGTCAATAAATAGTTAA+GGG + chr2_1:60470465-60470484 Msa0215320:intron 15.0%
!!! AAAGATTTTCTTGATAAATT+GGG + chr2_1:60471347-60471366 Msa0215320:intron 15.0%
!!! TTATTTTTTTCTTTCTTTTC+TGG + chr2_1:60471569-60471588 Msa0215320:intron 15.0%
!! AAAATATGATATGATAGATT+TGG + chr2_1:60471611-60471630 Msa0215320:intron 15.0%
!! TATTTCAAAAAAGTTCAATT+TGG - chr2_1:60472062-60472081 None:intergenic 15.0%
!!! TTTTTAAACCATAAATTATC+TGG + chr2_1:60472182-60472201 Msa0215320:intron 15.0%
!!! TGATAATAATGTAAATTTTG+TGG + chr2_1:60472366-60472385 Msa0215320:intron 15.0%
!!! GATAATAATGTAAATTTTGT+GGG + chr2_1:60472367-60472386 Msa0215320:intron 15.0%
!! TATTAACTATCAAATTGAAA+TGG + chr2_1:60472704-60472723 Msa0215320:three_prime_UTR 15.0%
!! ATCTTAAGAAGAAAATTGAA+AGG - chr2_1:60467746-60467765 None:intergenic 20.0%
!! GTAAAATTACATGTGAAATT+AGG + chr2_1:60467895-60467914 Msa0215320:intron 20.0%
!!! GTATTTGAATTTGATTTTTG+TGG + chr2_1:60468099-60468118 Msa0215320:intron 20.0%
!!! TCATTTTCTCTAATTGTTAT+CGG - chr2_1:60468418-60468437 None:intergenic 20.0%
!! TGTTTATCTTTGATAGAAAT+GGG + chr2_1:60468973-60468992 Msa0215320:intron 20.0%
!!! ATGGGATATTAATTATTTTG+GGG + chr2_1:60468991-60469010 Msa0215320:intron 20.0%
!!! TATAAATTTTGACTTTCTGA+AGG + chr2_1:60469813-60469832 Msa0215320:intron 20.0%
!!! ATAAATTTTGACTTTCTGAA+GGG + chr2_1:60469814-60469833 Msa0215320:intron 20.0%
!! ACAATTAAATTAAGTACCTT+TGG - chr2_1:60470198-60470217 None:intergenic 20.0%
!! AAACTCTTAAAAAAGTTTAC+AGG - chr2_1:60470333-60470352 None:intergenic 20.0%
!! TTTGAAAACAACAAATAAAG+AGG - chr2_1:60470371-60470390 None:intergenic 20.0%
!! TGTAAATAACCTTAAAATGA+CGG + chr2_1:60470549-60470568 Msa0215320:intron 20.0%
!!! GAAAGATTTTCTTGATAAAT+TGG + chr2_1:60471346-60471365 Msa0215320:intron 20.0%
!! TGTATATTCTCTTATGAAAA+TGG + chr2_1:60472571-60472590 Msa0215320:intron 20.0%
!! ATTGAAATGGAAAAATTTAG+AGG + chr2_1:60472717-60472736 Msa0215320:three_prime_UTR 20.0%
!!! TATGTGTCAAATTTAAAACA+TGG + chr2_1:60472854-60472873 Msa0215320:three_prime_UTR 20.0%
!! ATCATAACAGAAAAATCTAA+CGG + chr2_1:60473012-60473031 Msa0215320:three_prime_UTR 20.0%
!!! TTGATAATTGAAAAATTCCA+TGG - chr2_1:60473060-60473079 None:intergenic 20.0%
!! GGATTATTAAAATTGATTGA+AGG - chr2_1:60473101-60473120 None:intergenic 20.0%
! CGATCATAGAAATTGAAAAA+GGG - chr2_1:60467769-60467788 None:intergenic 25.0%
! TCGATCATAGAAATTGAAAA+AGG - chr2_1:60467770-60467789 None:intergenic 25.0%
!! ACACAAGATTTAGAGTAATT+AGG - chr2_1:60467814-60467833 None:intergenic 25.0%
!!! GTAGATTGATTTTTTTTCAG+TGG + chr2_1:60467918-60467937 Msa0215320:intron 25.0%
! TCAGTGATGATTACAAAATT+AGG + chr2_1:60467967-60467986 Msa0215320:intron 25.0%
!! TAAAGTGTTAGATGTTGAAT+CGG + chr2_1:60467995-60468014 Msa0215320:intron 25.0%
! ATTGGATGAAAAAAAATGTG+TGG + chr2_1:60468240-60468259 Msa0215320:intron 25.0%
!!! TTTGTTTTAGTCTAGTCTTT+TGG + chr2_1:60468279-60468298 Msa0215320:intron 25.0%
! TGTTATCATATCATATGTGT+TGG + chr2_1:60468448-60468467 Msa0215320:intron 25.0%
! TACCATATAACACGAAAATA+GGG - chr2_1:60468630-60468649 None:intergenic 25.0%
! GAAAAAATGTTGTCAAATAG+TGG + chr2_1:60468655-60468674 Msa0215320:intron 25.0%
! GTGTTTATCTTTGATAGAAA+TGG + chr2_1:60468972-60468991 Msa0215320:intron 25.0%
! AAGAAAATAGTTCAAGAAGA+TGG - chr2_1:60469355-60469374 None:intergenic 25.0%
!!! TACTCTAATCTTTGTTATTG+TGG + chr2_1:60469629-60469648 Msa0215320:intron 25.0%
!!! ACTCTAATCTTTGTTATTGT+GGG + chr2_1:60469630-60469649 Msa0215320:intron 25.0%
! AATACATCAACTTCATGAAA+AGG - chr2_1:60469794-60469813 None:intergenic 25.0%
! TACATTATATTTGAACTGCA+GGG - chr2_1:60469863-60469882 None:intergenic 25.0%
! ATACATTATATTTGAACTGC+AGG - chr2_1:60469864-60469883 None:intergenic 25.0%
! GGAAATACATTTGTATAGAA+AGG + chr2_1:60469915-60469934 Msa0215320:intron 25.0%
!! TGAGATTTCTTTCTTTTATG+AGG - chr2_1:60470084-60470103 None:intergenic 25.0%
!! TCTGTGTTGTGATATTATTT+TGG + chr2_1:60470234-60470253 Msa0215320:intron 25.0%
!! ATTATGTTGTCATTTCTTCT+TGG - chr2_1:60470295-60470314 None:intergenic 25.0%
!!! CAGTAAATTGTTACTTTTGA+CGG - chr2_1:60470515-60470534 None:intergenic 25.0%
! TCTTGAAGATTAGAATTCTT+GGG - chr2_1:60470915-60470934 None:intergenic 25.0%
! ATCTTGAAGATTAGAATTCT+TGG - chr2_1:60470916-60470935 None:intergenic 25.0%
! AATCTTCAAGATTAGAGAAA+CGG + chr2_1:60470924-60470943 Msa0215320:intron 25.0%
! ATTAAGATAAAGATTGCACA+TGG + chr2_1:60470966-60470985 Msa0215320:intron 25.0%
!! TGTAATTTGGTAAGTTTGTT+AGG - chr2_1:60471208-60471227 None:intergenic 25.0%
! GTTAGTACAAGTTTGTAATT+TGG - chr2_1:60471221-60471240 None:intergenic 25.0%
! TATTTGGACAATCTAACAAA+TGG - chr2_1:60471291-60471310 None:intergenic 25.0%
!! ATTTTCTTGATAAATTGGGA+TGG + chr2_1:60471351-60471370 Msa0215320:intron 25.0%
! ATCATCAAAGAAGAAAAGAA+AGG - chr2_1:60471774-60471793 None:intergenic 25.0%
!! TTGATATTCTGAAAGATAAG+TGG + chr2_1:60471841-60471860 Msa0215320:CDS 25.0%
!! TCTATTAACAACAGTTTTTC+AGG - chr2_1:60471962-60471981 None:intergenic 25.0%
! TTCAAAAAAGTTCAATTTGG+AGG - chr2_1:60472059-60472078 None:intergenic 25.0%
!! GTTGAAAGAATTTTTCATGT+TGG + chr2_1:60472109-60472128 Msa0215320:intron 25.0%
!!! TTCATGTTGGTAAAGTTTTA+TGG + chr2_1:60472122-60472141 Msa0215320:intron 25.0%
!!! TCATGTTGGTAAAGTTTTAT+GGG + chr2_1:60472123-60472142 Msa0215320:intron 25.0%
! TTGAATGCATAATTGATTGT+GGG + chr2_1:60472205-60472224 Msa0215320:intron 25.0%
! AAGAGCTTGAATACTAAAAT+AGG - chr2_1:60472394-60472413 None:intergenic 25.0%
! TTGGAACTTGTATGAATATA+TGG + chr2_1:60472825-60472844 Msa0215320:three_prime_UTR 25.0%
!! TCAACTGCTAAATGTAATTT+TGG + chr2_1:60472884-60472903 Msa0215320:three_prime_UTR 25.0%
!! TTTTGAATAAGCTTTTCCTT+TGG + chr2_1:60472923-60472942 Msa0215320:three_prime_UTR 25.0%
GATGAGAATAAAACAATACC+TGG - chr2_1:60468185-60468204 None:intergenic 30.0%
! TGTAGAAAGAAGGTTTTACT+TGG + chr2_1:60468214-60468233 Msa0215320:intron 30.0%
! GAAGGTTTTACTTGGTTAAT+TGG + chr2_1:60468222-60468241 Msa0215320:intron 30.0%
!!! AATGTGTGGTTCTTATTTTG+TGG + chr2_1:60468254-60468273 Msa0215320:intron 30.0%
!! GTCTTTTGGAAGATATGTTA+TGG + chr2_1:60468293-60468312 Msa0215320:intron 30.0%
AATTTGATTCATGTGCGATA+AGG + chr2_1:60468319-60468338 Msa0215320:intron 30.0%
AACATAAATCATACACACCA+AGG - chr2_1:60468548-60468567 None:intergenic 30.0%
! ATCCCTATTTTCGTGTTATA+TGG + chr2_1:60468625-60468644 Msa0215320:intron 30.0%
CTACCATATAACACGAAAAT+AGG - chr2_1:60468631-60468650 None:intergenic 30.0%
TATTTCAATGTGATGATCCT+TGG + chr2_1:60468877-60468896 Msa0215320:CDS 30.0%
AACACAAAATACGCATTTCA+AGG - chr2_1:60468957-60468976 None:intergenic 30.0%
!! TCTATTATGCAGACTTGTTT+TGG + chr2_1:60469056-60469075 Msa0215320:intron 30.0%
!! CTATTATGCAGACTTGTTTT+GGG + chr2_1:60469057-60469076 Msa0215320:intron 30.0%
!!! GTTTTGGGAATGATTATGAA+AGG + chr2_1:60469072-60469091 Msa0215320:intron 30.0%
GCAGTGAATTAGAAATATCA+TGG - chr2_1:60469117-60469136 None:intergenic 30.0%
! ATCCTGTTAATAATTTTGCG+AGG + chr2_1:60469204-60469223 Msa0215320:intron 30.0%
AAACGATTTGATTAATGAGG+TGG + chr2_1:60469228-60469247 Msa0215320:intron 30.0%
AACGATTTGATTAATGAGGT+GGG + chr2_1:60469229-60469248 Msa0215320:intron 30.0%
TAAACACATGATAAGAAGAC+AGG - chr2_1:60469331-60469350 None:intergenic 30.0%
!! TTCTTTGAAGTTCGTTATCT+TGG + chr2_1:60469370-60469389 Msa0215320:intron 30.0%
GGTAAAAATATATAACGCCT+AGG - chr2_1:60469427-60469446 None:intergenic 30.0%
! TCATAGAAGTATACACACAT+GGG - chr2_1:60469473-60469492 None:intergenic 30.0%
! ATCATAGAAGTATACACACA+TGG - chr2_1:60469474-60469493 None:intergenic 30.0%
! ACTTCTATGATCATTTCTAG+TGG + chr2_1:60469483-60469502 Msa0215320:intron 30.0%
! TTTCTCGTATGTAACTCTTT+TGG + chr2_1:60469523-60469542 Msa0215320:intron 30.0%
TAGAAGAGCTAATAAGTTAC+TGG + chr2_1:60469584-60469603 Msa0215320:intron 30.0%
AGAAGAGCTAATAAGTTACT+GGG + chr2_1:60469585-60469604 Msa0215320:intron 30.0%
AACTTCATGAAAAGGAAAAG+TGG - chr2_1:60469786-60469805 None:intergenic 30.0%
!!! TAGTGTGTCTCATTTTAACT+TGG + chr2_1:60469883-60469902 Msa0215320:intron 30.0%
!!! AGTGTGTCTCATTTTAACTT+GGG + chr2_1:60469884-60469903 Msa0215320:intron 30.0%
! TGCTTCTCTGATCATATTTT+AGG + chr2_1:60469984-60470003 Msa0215320:intron 30.0%
! GCTTCTCTGATCATATTTTA+GGG + chr2_1:60469985-60470004 Msa0215320:intron 30.0%
!!! TCTGATCATATTTTAGGGTT+TGG + chr2_1:60469990-60470009 Msa0215320:intron 30.0%
!!! TCATATTTTAGGGTTTGGAA+AGG + chr2_1:60469995-60470014 Msa0215320:intron 30.0%
! TTTCTTTCTTTTATGAGGAG+AGG - chr2_1:60470079-60470098 None:intergenic 30.0%
!!! AGTGTTTTGTTTCCATTACT+AGG + chr2_1:60470120-60470139 Msa0215320:intron 30.0%
!!! GTGTTTTGTTTCCATTACTA+GGG + chr2_1:60470121-60470140 Msa0215320:intron 30.0%
!!! TGTTTTGTTTCCATTACTAG+GGG + chr2_1:60470122-60470141 Msa0215320:intron 30.0%
!! AGTTAAGGGTATCATAGAAA+AGG + chr2_1:60470479-60470498 Msa0215320:intron 30.0%
CGTCAAAAGTAACAATTTAC+TGG + chr2_1:60470513-60470532 Msa0215320:intron 30.0%
GATCGATGTCAAACTTATAA+AGG + chr2_1:60470614-60470633 Msa0215320:intron 30.0%
AGCTAAAAAAATAGCTTCTC+CGG + chr2_1:60470882-60470901 Msa0215320:intron 30.0%
ATCTTCAAGATTAGAGAAAC+GGG + chr2_1:60470925-60470944 Msa0215320:intron 30.0%
ATTGAAAGTGAAGATACAAC+AGG + chr2_1:60471017-60471036 Msa0215320:intron 30.0%
ATTGTGACTAGAGAATTATC+TGG - chr2_1:60471096-60471115 None:intergenic 30.0%
GTCTTTAAATAGCCATCAAT+CGG - chr2_1:60471148-60471167 None:intergenic 30.0%
!!! GTTGTTAAGAGTTGCTATTT+TGG - chr2_1:60471183-60471202 None:intergenic 30.0%
!! AATTTGGTAAGTTTGTTAGG+TGG - chr2_1:60471205-60471224 None:intergenic 30.0%
AATAATGCTCAATTTCTACG+TGG + chr2_1:60471379-60471398 Msa0215320:intron 30.0%
TAAACAATCCACAATTCTGA+GGG - chr2_1:60471549-60471568 None:intergenic 30.0%
ATAAACAATCCACAATTCTG+AGG - chr2_1:60471550-60471569 None:intergenic 30.0%
ATATCATCCTAACATTGACA+AGG + chr2_1:60471725-60471744 Msa0215320:CDS 30.0%
AAAGAAGAAAAGAAAGGCAA+GGG - chr2_1:60471768-60471787 None:intergenic 30.0%
! ATTTTCACCTTTTACTCTAG+TGG + chr2_1:60471908-60471927 Msa0215320:intron 30.0%
AGTTAATCCACTAGAGTAAA+AGG - chr2_1:60471918-60471937 None:intergenic 30.0%
!!! CAGTTTTTCAGGAAATGAAT+TGG - chr2_1:60471951-60471970 None:intergenic 30.0%
AAAACTGTAGTTAACTCAAG+TGG + chr2_1:60472024-60472043 Msa0215320:intron 30.0%
!! AAGTTTTATGGGAAAACAGA+TGG + chr2_1:60472134-60472153 Msa0215320:intron 30.0%
GCATTCAACCAGATAATTTA+TGG - chr2_1:60472193-60472212 None:intergenic 30.0%
GTTGAATGCATAATTGATTG+TGG + chr2_1:60472204-60472223 Msa0215320:intron 30.0%
TGAATGCATAATTGATTGTG+GGG + chr2_1:60472206-60472225 Msa0215320:intron 30.0%
CAGAAATCAAAAGTAAGATC+CGG - chr2_1:60472261-60472280 None:intergenic 30.0%
AAAATTAACCAGCTGTGTAT+TGG + chr2_1:60472329-60472348 Msa0215320:intron 30.0%
TTGGTCTCAAATAACAATAG+TGG + chr2_1:60472671-60472690 Msa0215320:three_prime_UTR 30.0%
GAAAGCAATAAACATGTAAC+CGG - chr2_1:60472785-60472804 None:intergenic 30.0%
GTTTATTGCTTTCTATCTTC+CGG + chr2_1:60472792-60472811 Msa0215320:three_prime_UTR 30.0%
TTCATACAAGTTCCAATAGA+AGG - chr2_1:60472821-60472840 None:intergenic 30.0%
TTACATTTAGCAGTTGAAGA+TGG - chr2_1:60472881-60472900 None:intergenic 30.0%
TTCAATAATATTCTCAGCCA+TGG + chr2_1:60473040-60473059 Msa0215320:three_prime_UTR 30.0%
GCGTAGTAGAATTTCACAAA+GGG - chr2_1:60467597-60467616 None:intergenic 35.0%
AGAGAAGAGAGAGAAAAAGA+AGG - chr2_1:60467634-60467653 None:intergenic 35.0%
GGTTACTGTTAGCCATTATT+GGG - chr2_1:60467696-60467715 None:intergenic 35.0%
AGGTTACTGTTAGCCATTAT+TGG - chr2_1:60467697-60467716 None:intergenic 35.0%
AGTGTTTCTTTGATCTCTTC+AGG + chr2_1:60468136-60468155 Msa0215320:intron 35.0%
! CGTTTTGTAGTGTAGAAAGA+AGG + chr2_1:60468204-60468223 Msa0215320:intron 35.0%
GCTTCATAGGGTAAAATTCA+AGG - chr2_1:60468374-60468393 None:intergenic 35.0%
! GTGCTTCTTAGATTTTACCT+TGG + chr2_1:60468528-60468547 Msa0215320:intron 35.0%
TCTATAGAGCTATATCACAG+TGG + chr2_1:60468591-60468610 Msa0215320:intron 35.0%
! AAATAACGGTTTGTTCAGTG+CGG - chr2_1:60468727-60468746 None:intergenic 35.0%
CAACACAGCAAAACAAAACA+AGG - chr2_1:60468788-60468807 None:intergenic 35.0%
GGTGTAAAACCAAGTTGTTA+GGG - chr2_1:60468936-60468955 None:intergenic 35.0%
AGGTGTAAAACCAAGTTGTT+AGG - chr2_1:60468937-60468956 None:intergenic 35.0%
TGCCTCGCAAAATTATTAAC+AGG - chr2_1:60469209-60469228 None:intergenic 35.0%
GGCAAACGATTTGATTAATG+AGG + chr2_1:60469225-60469244 Msa0215320:intron 35.0%
CTAGGTTCAGATGCATATAA+GGG - chr2_1:60469409-60469428 None:intergenic 35.0%
AAGTTACTGGGTCGAATAAA+TGG + chr2_1:60469597-60469616 Msa0215320:intron 35.0%
GGAAATTGATGCATGAGTTA+TGG + chr2_1:60469714-60469733 Msa0215320:intron 35.0%
!!! ATTTTAACTTGGGTGAGACT+TGG + chr2_1:60469894-60469913 Msa0215320:intron 35.0%
! AACAACTAGCTTGACTATAC+TGG + chr2_1:60470033-60470052 Msa0215320:intron 35.0%
! TTTCTTTTATGAGGAGAGGT+AGG - chr2_1:60470075-60470094 None:intergenic 35.0%
!!! GTTTTGTTTCCATTACTAGG+GGG + chr2_1:60470123-60470142 Msa0215320:intron 35.0%
TTTGCCTGAAGAATATCCAA+TGG + chr2_1:60470167-60470186 Msa0215320:CDS 35.0%
TAACAATTTACTGGTCCTCT+TGG + chr2_1:60470522-60470541 Msa0215320:intron 35.0%
!! TCTCTTTAGCCGTCATTTTA+AGG - chr2_1:60470561-60470580 None:intergenic 35.0%
TGTCAAACTTATAAAGGCCA+TGG + chr2_1:60470620-60470639 Msa0215320:intron 35.0%
GTCAAACTTATAAAGGCCAT+GGG + chr2_1:60470621-60470640 Msa0215320:intron 35.0%
AAAAAATAGCTTCTCCGGTT+AGG + chr2_1:60470887-60470906 Msa0215320:intron 35.0%
GTATGAAATGAGTGTTCCTT+TGG - chr2_1:60471074-60471093 None:intergenic 35.0%
ACACATACTGTGACTCTATT+TGG - chr2_1:60471307-60471326 None:intergenic 35.0%
!!! TGTGACTGTCGTTTTAGTAA+TGG - chr2_1:60471432-60471451 None:intergenic 35.0%
ATTTACGAAAGAGGTCTAGT+AGG + chr2_1:60471479-60471498 Msa0215320:intron 35.0%
AAGCAAGGCATGATTGAATT+AGG - chr2_1:60471678-60471697 None:intergenic 35.0%
AAGCATACCTTGTCAATGTT+AGG - chr2_1:60471735-60471754 None:intergenic 35.0%
CAAAGAAGAAAAGAAAGGCA+AGG - chr2_1:60471769-60471788 None:intergenic 35.0%
!!! CTAGTGGATTAACTTTTTGC+TGG + chr2_1:60471924-60471943 Msa0215320:intron 35.0%
CTTACTCAATTTGTATGCGA+AGG + chr2_1:60472230-60472249 Msa0215320:intron 35.0%
CTTGCATATACGTAACATTG+TGG + chr2_1:60472288-60472307 Msa0215320:intron 35.0%
TACGTAACATTGTGGAAAGT+CGG + chr2_1:60472296-60472315 Msa0215320:intron 35.0%
CATTATATCCAATACACAGC+TGG - chr2_1:60472340-60472359 None:intergenic 35.0%
TTAGCAATGTTCTCAGAAAG+AGG - chr2_1:60472441-60472460 None:intergenic 35.0%
!! TAAGCATTGGAAATCTAACG+AGG + chr2_1:60472458-60472477 Msa0215320:CDS 35.0%
ATATAATCTGGTCCACTCTT+TGG - chr2_1:60472619-60472638 None:intergenic 35.0%
!! GACAATTTGGTGGATACTTT+TGG + chr2_1:60472652-60472671 Msa0215320:exon 35.0%
GAGGAATTGTCTAAACTATG+TGG + chr2_1:60472736-60472755 Msa0215320:three_prime_UTR 35.0%
! CATTTTCCTCTTATAGCTTC+CGG + chr2_1:60472763-60472782 Msa0215320:three_prime_UTR 35.0%
! TGATAATGTGGACAAACCAA+AGG - chr2_1:60472942-60472961 None:intergenic 35.0%
!! TTGGTTTGTCCACATTATCA+TGG + chr2_1:60472942-60472961 Msa0215320:three_prime_UTR 35.0%
TGTCCACATTATCATGGATT+TGG + chr2_1:60472948-60472967 Msa0215320:three_prime_UTR 35.0%
! AAGCCAAATCCATGATAATG+TGG - chr2_1:60472954-60472973 None:intergenic 35.0%
!! AGTGAAGAGTACCCTTTAAA+CGG + chr2_1:60472980-60472999 Msa0215320:three_prime_UTR 35.0%
ATTCACACTACCCGTTTAAA+GGG - chr2_1:60472994-60473013 None:intergenic 35.0%
CGCGTAGTAGAATTTCACAA+AGG - chr2_1:60467598-60467617 None:intergenic 40.0%
GATTGCAAAGTACGCAATAG+GGG - chr2_1:60467671-60467690 None:intergenic 40.0%
CGATTGCAAAGTACGCAATA+GGG - chr2_1:60467672-60467691 None:intergenic 40.0%
TCGATTGCAAAGTACGCAAT+AGG - chr2_1:60467673-60467692 None:intergenic 40.0%
CTTTGCAATCGACCCAATAA+TGG + chr2_1:60467681-60467700 Msa0215320:exon 40.0%
! TTGGTTCGTATCAGAACGAT+AGG + chr2_1:60468467-60468486 Msa0215320:intron 40.0%
! TAAGAAGCACAAATACCCCT+CGG - chr2_1:60468518-60468537 None:intergenic 40.0%
ACTATGCAGCAATGGAATAG+CGG - chr2_1:60468689-60468708 None:intergenic 40.0%
GAAATTCCACTATGCAGCAA+TGG - chr2_1:60468697-60468716 None:intergenic 40.0%
CTTCATAAGGAGACTGAGTT+GGG - chr2_1:60468903-60468922 None:intergenic 40.0%
TAGTGATGACCCTAACAACT+TGG + chr2_1:60468924-60468943 Msa0215320:CDS 40.0%
GCATATAAGGGCTAACAATG+TGG - chr2_1:60469397-60469416 None:intergenic 40.0%
CCTAGGTTCAGATGCATATA+AGG - chr2_1:60469410-60469429 None:intergenic 40.0%
CCTTATATGCATCTGAACCT+AGG + chr2_1:60469407-60469426 Msa0215320:intron 40.0%
ACGACTGTGACATGTACATA+TGG - chr2_1:60469448-60469467 None:intergenic 40.0%
!! TTTTGGTGCACCAAAAAGAC+TGG + chr2_1:60469540-60469559 Msa0215320:intron 40.0%
! TTTGGTGCACCAAAAAGACT+GGG + chr2_1:60469541-60469560 Msa0215320:intron 40.0%
! AGTGTTTGACCCAGTCTTTT+TGG - chr2_1:60469553-60469572 None:intergenic 40.0%
TTGAAAACTCCCCCTAGTAA+TGG - chr2_1:60470135-60470154 None:intergenic 40.0%
GTCATTTCTTCTTGGTAGAC+AGG - chr2_1:60470287-60470306 None:intergenic 40.0%
CCTCTGCAGTGAATAGTTAA+GGG - chr2_1:60470431-60470450 None:intergenic 40.0%
CCTTAACTATTCACTGCAGA+GGG + chr2_1:60470429-60470448 Msa0215320:intron 40.0%
GGTTATTTACACATGCCAAG+AGG - chr2_1:60470540-60470559 None:intergenic 40.0%
TTACAGAATATCTCGTCCCA+TGG - chr2_1:60470640-60470659 None:intergenic 40.0%
AGAATTCTTGGGTTCCTAAC+CGG - chr2_1:60470904-60470923 None:intergenic 40.0%
ATGATAACCTTCCACACCAA+AGG + chr2_1:60471055-60471074 Msa0215320:intron 40.0%
AAATGAGTGTTCCTTTGGTG+TGG - chr2_1:60471069-60471088 None:intergenic 40.0%
ACAGCTATCGTGTATCTGAT+AGG + chr2_1:60471449-60471468 Msa0215320:intron 40.0%
CAGCTATCGTGTATCTGATA+GGG + chr2_1:60471450-60471469 Msa0215320:intron 40.0%
AGCTATCGTGTATCTGATAG+GGG + chr2_1:60471451-60471470 Msa0215320:intron 40.0%
GGGGTTTACATTTACGAAAG+AGG + chr2_1:60471470-60471489 Msa0215320:intron 40.0%
! TTTTTGTCAAGAACCTGACC+TGG - chr2_1:60471704-60471723 None:intergenic 40.0%
AGTTGAAATTCGATGCAGCT+TGG + chr2_1:60471807-60471826 Msa0215320:intron 40.0%
AAGTACAGTGCGAATCTGAA+GGG - chr2_1:60471874-60471893 None:intergenic 40.0%
AAAGTACAGTGCGAATCTGA+AGG - chr2_1:60471875-60471894 None:intergenic 40.0%
! AGATTCGCACTGTACTTTTG+AGG + chr2_1:60471877-60471896 Msa0215320:CDS 40.0%
TCTCAGAAAGAGGATCATCT+GGG - chr2_1:60472431-60472450 None:intergenic 40.0%
TTCTCAGAAAGAGGATCATC+TGG - chr2_1:60472432-60472451 None:intergenic 40.0%
CTGAGAACATTGCTAAGCAT+TGG + chr2_1:60472445-60472464 Msa0215320:CDS 40.0%
TTAAATCTGCAGCCAAAGAG+TGG + chr2_1:60472604-60472623 Msa0215320:intron 40.0%
CGGAAGCTATAAGAGGAAAA+TGG - chr2_1:60472765-60472784 None:intergenic 40.0%
ATGTAACCGGAAGCTATAAG+AGG - chr2_1:60472772-60472791 None:intergenic 40.0%
AAGTTCCAATAGAAGGCTTC+CGG - chr2_1:60472814-60472833 None:intergenic 40.0%
!! GTGAAGAGTACCCTTTAAAC+GGG + chr2_1:60472981-60473000 Msa0215320:three_prime_UTR 40.0%
GATTCACACTACCCGTTTAA+AGG - chr2_1:60472995-60473014 None:intergenic 40.0%
!! TTGACTTCTCTGAGGTAAGT+GGG - chr2_1:60473122-60473141 None:intergenic 40.0%
AGTACGCAATAGGGGTTTGA+GGG - chr2_1:60467663-60467682 None:intergenic 45.0%
AAGTACGCAATAGGGGTTTG+AGG - chr2_1:60467664-60467683 None:intergenic 45.0%
! CCTTGATGATTCTTCGAGGA+AGG - chr2_1:60467717-60467736 None:intergenic 45.0%
CCTTCCTCGAAGAATCATCA+AGG + chr2_1:60467714-60467733 Msa0215320:CDS 45.0%
! CGAACCTTGATGATTCTTCG+AGG - chr2_1:60467721-60467740 None:intergenic 45.0%
GATTCATGTGCGATAAGGCT+TGG + chr2_1:60468324-60468343 Msa0215320:intron 45.0%
CTTCGTGTCTGTGCTTCATA+GGG - chr2_1:60468386-60468405 None:intergenic 45.0%
TCTTCGTGTCTGTGCTTCAT+AGG - chr2_1:60468387-60468406 None:intergenic 45.0%
GCTATTCCATTGCTGCATAG+TGG + chr2_1:60468688-60468707 Msa0215320:intron 45.0%
CTGCAGATCACGGGAAATAA+CGG - chr2_1:60468741-60468760 None:intergenic 45.0%
TGGAATTAGTGCATCCCCTT+CGG + chr2_1:60468840-60468859 Msa0215320:CDS 45.0%
ACCGCATATTGTCTTCCGAA+GGG - chr2_1:60468858-60468877 None:intergenic 45.0%
TACCGCATATTGTCTTCCGA+AGG - chr2_1:60468859-60468878 None:intergenic 45.0%
CCTTCATAAGGAGACTGAGT+TGG - chr2_1:60468904-60468923 None:intergenic 45.0%
CCAACTCAGTCTCCTTATGA+AGG + chr2_1:60468901-60468920 Msa0215320:CDS 45.0%
GGGTCATCACTACCTTCATA+AGG - chr2_1:60468916-60468935 None:intergenic 45.0%
GAGGTGGGCACAAGAATATT+TGG + chr2_1:60469244-60469263 Msa0215320:intron 45.0%
GATGCATGAGTTATGGCACT+TGG + chr2_1:60469721-60469740 Msa0215320:intron 45.0%
CATGAGTTATGGCACTTGGT+TGG + chr2_1:60469725-60469744 Msa0215320:intron 45.0%
TTATGGCACTTGGTTGGAGT+GGG + chr2_1:60469731-60469750 Msa0215320:intron 45.0%
GCAGCCATTGGATATTCTTC+AGG - chr2_1:60470174-60470193 None:intergenic 45.0%
ATATCCAATGGCTGCTCCAA+AGG + chr2_1:60470179-60470198 Msa0215320:CDS 45.0%
CCCTTAACTATTCACTGCAG+AGG + chr2_1:60470428-60470447 Msa0215320:intron 45.0%
CCCTCTGCAGTGAATAGTTA+AGG - chr2_1:60470432-60470451 None:intergenic 45.0%
TTCACTGCAGAGGGAGAAAT+AGG + chr2_1:60470438-60470457 Msa0215320:intron 45.0%
TTCAAAGGGGGGGATATGAA+GGG - chr2_1:60470713-60470732 None:intergenic 45.0%
TTTCAAAGGGGGGGATATGA+AGG - chr2_1:60470714-60470733 None:intergenic 45.0%
TCGCTGCATCAGTTTCAAAG+GGG - chr2_1:60470726-60470745 None:intergenic 45.0%
CTCGCTGCATCAGTTTCAAA+GGG - chr2_1:60470727-60470746 None:intergenic 45.0%
TCTCGCTGCATCAGTTTCAA+AGG - chr2_1:60470728-60470747 None:intergenic 45.0%
GAAACTGATGCAGCGAGAAA+TGG + chr2_1:60470730-60470749 Msa0215320:intron 45.0%
AATAGCCATCAATCGGCAGA+GGG - chr2_1:60471141-60471160 None:intergenic 45.0%
AAATAGCCATCAATCGGCAG+AGG - chr2_1:60471142-60471161 None:intergenic 45.0%
TGCTCAATTTCTACGTGGTC+TGG + chr2_1:60471384-60471403 Msa0215320:intron 45.0%
GCTCAATTTCTACGTGGTCT+GGG + chr2_1:60471385-60471404 Msa0215320:intron 45.0%
TACGAAAGAGGTCTAGTAGG+AGG + chr2_1:60471482-60471501 Msa0215320:intron 45.0%
! ACAATCCACAATTCTGAGGG+AGG - chr2_1:60471546-60471565 None:intergenic 45.0%
AATCATGCCTTGCTTCTTCC+AGG + chr2_1:60471683-60471702 Msa0215320:intron 45.0%
TTTGTATGCGAAGGTTCAGC+CGG + chr2_1:60472239-60472258 Msa0215320:intron 45.0%
GAAAGAGGATCATCTGGGTT+TGG - chr2_1:60472426-60472445 None:intergenic 45.0%
TTGGAAATCTAACGAGGCTG+AGG + chr2_1:60472464-60472483 Msa0215320:CDS 45.0%
TGGACCAGATTATATGCCAG+CGG + chr2_1:60472624-60472643 Msa0215320:CDS 45.0%
ATCTTCCGGAAGCCTTCTAT+TGG + chr2_1:60472806-60472825 Msa0215320:three_prime_UTR 45.0%
!!! TCTTTTTATTTTATTTTTTA+AGG + chr2_1:60471506-60471525 Msa0215320:intron 5.0%
GAACGATAGGTTTCCGACAC+CGG + chr2_1:60468480-60468499 Msa0215320:intron 50.0%
AACGATAGGTTTCCGACACC+GGG + chr2_1:60468481-60468500 Msa0215320:intron 50.0%
TGCTGTCAACTGCAGATCAC+GGG - chr2_1:60468750-60468769 None:intergenic 50.0%
GTGCTGTCAACTGCAGATCA+CGG - chr2_1:60468751-60468770 None:intergenic 50.0%
GAAGGGGATGCACTAATTCC+AGG - chr2_1:60468841-60468860 None:intergenic 50.0%
CCGCATATTGTCTTCCGAAG+GGG - chr2_1:60468857-60468876 None:intergenic 50.0%
CCCCTTCGGAAGACAATATG+CGG + chr2_1:60468854-60468873 Msa0215320:CDS 50.0%
GTTATGGCACTTGGTTGGAG+TGG + chr2_1:60469730-60469749 Msa0215320:intron 50.0%
!! AGTACCTTTGGAGCAGCCAT+TGG - chr2_1:60470186-60470205 None:intergenic 50.0%
ACTGCAGAGGGAGAAATAGG+TGG + chr2_1:60470441-60470460 Msa0215320:intron 50.0%
CTGCATCAGTTTCAAAGGGG+GGG - chr2_1:60470723-60470742 None:intergenic 50.0%
GCTGCATCAGTTTCAAAGGG+GGG - chr2_1:60470724-60470743 None:intergenic 50.0%
CGCTGCATCAGTTTCAAAGG+GGG - chr2_1:60470725-60470744 None:intergenic 50.0%
! GAGTGTTCCTTTGGTGTGGA+AGG - chr2_1:60471065-60471084 None:intergenic 50.0%
ATAGCCATCAATCGGCAGAG+GGG - chr2_1:60471140-60471159 None:intergenic 50.0%
TCATGCCTCCCTCAGAATTG+TGG + chr2_1:60471538-60471557 Msa0215320:intron 50.0%
AACCTGACCTGGAAGAAGCA+AGG - chr2_1:60471693-60471712 None:intergenic 50.0%
GAAATTCGATGCAGCTTGGC+AGG + chr2_1:60471811-60471830 Msa0215320:intron 50.0%
TACAGTGCGAATCTGAAGGG+CGG - chr2_1:60471871-60471890 None:intergenic 50.0%
AGCACCGCTGGCATATAATC+TGG - chr2_1:60472631-60472650 None:intergenic 50.0%
! ACCAAATTGTCAAGCACCGC+TGG - chr2_1:60472643-60472662 None:intergenic 50.0%
AGCGGTGCTTGACAATTTGG+TGG + chr2_1:60472642-60472661 Msa0215320:exon 50.0%
GATTAAGCGTGTCCCGGTGT+CGG - chr2_1:60468496-60468515 None:intergenic 55.0%
GTTTGTTCAGTGCGGATCGC+AGG - chr2_1:60468719-60468738 None:intergenic 55.0%
! TGATCTGATGATGCAGCGCC+TGG + chr2_1:60468820-60468839 Msa0215320:intron 55.0%
! AAGGAGACTGAGTTGGGCCA+AGG - chr2_1:60468897-60468916 None:intergenic 55.0%
! CTTTCCCCTCTGCCGATTGA+TGG + chr2_1:60471133-60471152 Msa0215320:intron 55.0%
TGCCTTGCTTCTTCCAGGTC+AGG + chr2_1:60471688-60471707 Msa0215320:intron 55.0%
ACAGTGCGAATCTGAAGGGC+GGG - chr2_1:60471870-60471889 None:intergenic 55.0%
GCCAGCGGTGCTTGACAATT+TGG + chr2_1:60472639-60472658 Msa0215320:exon 55.0%
CAGCGTTTGCTCAGTGAGCC+AGG + chr2_1:60468164-60468183 Msa0215320:CDS 60.0%
ACCGGGACACGCTTAATCCG+AGG + chr2_1:60468498-60468517 Msa0215320:intron 60.0%
CCCTCGGATTAAGCGTGTCC+CGG - chr2_1:60468502-60468521 None:intergenic 60.0%
CCGGGACACGCTTAATCCGA+GGG + chr2_1:60468499-60468518 Msa0215320:intron 60.0%
CGGGACACGCTTAATCCGAG+GGG + chr2_1:60468500-60468519 Msa0215320:intron 60.0%
AGGGGGGGATATGAAGGGCA+AGG - chr2_1:60470708-60470727 None:intergenic 60.0%
GAGGCTGAGGCTGTTGAGAC+AGG + chr2_1:60472477-60472496 Msa0215320:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 60467560 60473141 60467560 ID=Msa0215320;Name=Msa0215320
chr2_1 mRNA 60467560 60473141 60467560 ID=Msa0215320-mRNA-1;Parent=Msa0215320;Name=Msa0215320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=140|0.85|0.87|1|1|1|8|488|167
chr2_1 exon 60467560 60467735 60467560 ID=Msa0215320-mRNA-1:exon:16604;Parent=Msa0215320-mRNA-1
chr2_1 exon 60468158 60468185 60468158 ID=Msa0215320-mRNA-1:exon:16605;Parent=Msa0215320-mRNA-1
chr2_1 exon 60468836 60468964 60468836 ID=Msa0215320-mRNA-1:exon:16606;Parent=Msa0215320-mRNA-1
chr2_1 exon 60470142 60470200 60470142 ID=Msa0215320-mRNA-1:exon:16607;Parent=Msa0215320-mRNA-1
chr2_1 exon 60471705 60471746 60471705 ID=Msa0215320-mRNA-1:exon:16608;Parent=Msa0215320-mRNA-1
chr2_1 exon 60471825 60471898 60471825 ID=Msa0215320-mRNA-1:exon:16609;Parent=Msa0215320-mRNA-1
chr2_1 exon 60472401 60472498 60472401 ID=Msa0215320-mRNA-1:exon:16610;Parent=Msa0215320-mRNA-1
chr2_1 exon 60472616 60473141 60472616 ID=Msa0215320-mRNA-1:exon:16611;Parent=Msa0215320-mRNA-1
chr2_1 five_prime_UTR 60467560 60467699 60467560 ID=Msa0215320-mRNA-1:five_prime_utr;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60467700 60467735 60467700 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60468158 60468185 60468158 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60468836 60468964 60468836 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60470142 60470200 60470142 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60471705 60471746 60471705 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60471825 60471898 60471825 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60472401 60472498 60472401 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 CDS 60472616 60472653 60472616 ID=Msa0215320-mRNA-1:cds;Parent=Msa0215320-mRNA-1
chr2_1 three_prime_UTR 60472654 60473141 60472654 ID=Msa0215320-mRNA-1:three_prime_utr;Parent=Msa0215320-mRNA-1
Gene Sequence

>Msa0215320

ATGGCTAACAGTAACCTTCCTCGAAGAATCATCAAGGAAACACAGCGTTTGCTCAGTGAGCCAGCGCCTGGAATTAGTGCATCCCCTTCGGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGCCCAACTCAGTCTCCTTATGAAGGTAGTGATGACCCTAACAACTTGGTTTTACACCTTGAAATGCGGGGAGTTTTCAAGCTAGAACTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCAGGTTCTTGACAAAAATATATCATCCTAACATTGACAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCCGCCCTTCAGATTCGCACTGTACTTTTGAGTATTCAAGCTCTTTTGAGTGCACCAAACCCAGATGATCCTCTTTCTGAGAACATTGCTAAGCATTGGAAATCTAACGAGGCTGAGGCTGTTGAGACAGCCAAAGAGTGGACCAGATTATATGCCAGCGGTGCTTGA
Protein sequence

>Msa0215320

MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGSDDPNNLVLHLEMRGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA*