Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226900 | XP_013465349.1 | 96.487 | 427 | 3 | 1 | 1 | 415 | 299 | 725 | 0.0 | 837 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226900 | sp|Q9ZUU9|AB3G_ARATH | 74.408 | 422 | 94 | 2 | 1 | 408 | 306 | 727 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226900 | G8A154 | 96.487 | 427 | 3 | 1 | 1 | 415 | 299 | 725 | 0.0 | 837 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190240 | Msa0226900 | 0.825063 | 5.750362e-54 | -8.615850e-47 |
| Msa0226900 | Msa0300470 | 0.811190 | 7.925517e-51 | -8.615850e-47 |
| Msa0226900 | Msa0337970 | 0.810060 | 1.390621e-50 | -8.615850e-47 |
| Msa0226900 | Msa0339100 | 0.950194 | 2.725579e-108 | -8.615850e-47 |
| Msa0226900 | Msa0620900 | 0.800743 | 1.249185e-48 | -8.615850e-47 |
| Msa0226900 | Msa1128110 | -0.819923 | 9.000465e-53 | -8.615850e-47 |
| Msa0226900 | Msa1297640 | 0.804486 | 2.111282e-49 | -8.615850e-47 |
| Msa0226900 | Msa1370980 | -0.801691 | 7.990478e-49 | -8.615850e-47 |
| Msa0226900 | Msa1434710 | -0.802827 | 4.663702e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226900 | MtrunA17_Chr2g0327241 | 96.487 | 427 | 3 | 1 | 1 | 415 | 299 | 725 | 0.0 | 837 |
| Msa0226900 | MtrunA17_Chr6g0477811 | 37.010 | 408 | 236 | 7 | 2 | 390 | 241 | 646 | 6.27e-82 | 265 |
| Msa0226900 | MtrunA17_Chr4g0050251 | 32.243 | 428 | 265 | 4 | 2 | 412 | 251 | 670 | 1.36e-74 | 246 |
| Msa0226900 | MtrunA17_Chr4g0050261 | 31.891 | 439 | 249 | 5 | 2 | 390 | 251 | 689 | 3.35e-74 | 246 |
| Msa0226900 | MtrunA17_Chr4g0050291 | 34.230 | 409 | 240 | 6 | 2 | 390 | 228 | 627 | 4.03e-74 | 244 |
| Msa0226900 | MtrunA17_Chr4g0039251 | 35.366 | 410 | 242 | 7 | 2 | 390 | 268 | 675 | 1.73e-69 | 233 |
| Msa0226900 | MtrunA17_Chr4g0026731 | 33.721 | 430 | 233 | 10 | 2 | 389 | 157 | 576 | 6.04e-68 | 226 |
| Msa0226900 | MtrunA17_Chr4g0039261 | 32.603 | 411 | 255 | 5 | 2 | 391 | 226 | 635 | 6.16e-68 | 228 |
| Msa0226900 | MtrunA17_Chr4g0050221 | 33.010 | 412 | 243 | 8 | 2 | 396 | 209 | 604 | 1.17e-65 | 221 |
| Msa0226900 | MtrunA17_Chr4g0039231 | 31.087 | 460 | 244 | 9 | 2 | 390 | 135 | 592 | 1.16e-60 | 207 |
| Msa0226900 | MtrunA17_Chr4g0050201 | 29.736 | 417 | 260 | 9 | 2 | 402 | 140 | 539 | 1.14e-53 | 187 |
| Msa0226900 | MtrunA17_Chr1g0202431 | 22.275 | 422 | 278 | 12 | 2 | 403 | 219 | 610 | 2.59e-14 | 74.7 |
| Msa0226900 | MtrunA17_Chr1g0213091 | 22.678 | 366 | 245 | 11 | 3 | 336 | 299 | 658 | 3.28e-13 | 71.6 |
| Msa0226900 | MtrunA17_Chr2g0316301 | 26.016 | 246 | 147 | 7 | 170 | 390 | 392 | 627 | 2.81e-12 | 68.6 |
| Msa0226900 | MtrunA17_Chr1g0176451 | 20.448 | 357 | 251 | 11 | 2 | 336 | 199 | 544 | 1.54e-11 | 66.2 |
| Msa0226900 | MtrunA17_Chr4g0065231 | 20.097 | 413 | 273 | 13 | 3 | 390 | 254 | 634 | 1.98e-11 | 65.9 |
| Msa0226900 | MtrunA17_Chr8g0384391 | 19.770 | 435 | 299 | 9 | 2 | 409 | 229 | 640 | 4.15e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226900 | AT2G28070.2 | 74.408 | 422 | 94 | 2 | 1 | 408 | 306 | 727 | 0.0 | 654 |
| Msa0226900 | AT2G28070.1 | 74.408 | 422 | 94 | 2 | 1 | 408 | 306 | 727 | 0.0 | 654 |
| Msa0226900 | AT1G17840.1 | 37.245 | 392 | 226 | 7 | 2 | 375 | 244 | 633 | 3.93e-78 | 256 |
| Msa0226900 | AT1G51500.1 | 32.930 | 413 | 253 | 6 | 2 | 392 | 220 | 630 | 9.42e-70 | 233 |
| Msa0226900 | AT3G21090.1 | 33.172 | 413 | 251 | 8 | 2 | 392 | 220 | 629 | 1.28e-69 | 233 |
| Msa0226900 | AT1G51460.1 | 32.697 | 419 | 251 | 8 | 2 | 390 | 205 | 622 | 1.10e-61 | 211 |
| Msa0226900 | AT1G53270.1 | 22.113 | 407 | 251 | 9 | 2 | 391 | 225 | 582 | 6.37e-15 | 77.0 |
| Msa0226900 | AT5G19410.1 | 19.221 | 411 | 280 | 7 | 2 | 396 | 247 | 621 | 1.03e-13 | 73.6 |
| Msa0226900 | AT5G19410.2 | 19.128 | 413 | 278 | 9 | 2 | 396 | 256 | 630 | 1.22e-13 | 73.2 |
| Msa0226900 | AT5G52860.1 | 23.563 | 348 | 215 | 12 | 2 | 336 | 212 | 521 | 5.76e-13 | 71.2 |
| Msa0226900 | AT4G25750.1 | 23.343 | 347 | 216 | 11 | 3 | 336 | 200 | 509 | 1.93e-12 | 69.3 |
| Msa0226900 | AT2G13610.1 | 20.482 | 415 | 290 | 9 | 2 | 390 | 235 | 635 | 6.62e-12 | 67.8 |
Find 71 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCCTGGCAATGCTTAAA+AGG | 0.194836 | 2_1:-77365750 | None:intergenic |
| AAAGTTTCAAGTGTAGTAAT+AGG | 0.213126 | 2_1:+77367572 | Msa0226900:CDS |
| AATGGAAATACGTTGTTCTT+TGG | 0.231808 | 2_1:+77364522 | Msa0226900:CDS |
| CTTTCATACATACTCTATTC+AGG | 0.302532 | 2_1:+77367055 | Msa0226900:CDS |
| AACAGCAGTGTCCATGTTTA+CGG | 0.309062 | 2_1:-77365089 | None:intergenic |
| CAAGGGAATGGAAATATTAC+TGG | 0.338845 | 2_1:+77365458 | Msa0226900:CDS |
| TCAGAAGGACTTTGCATGAT+TGG | 0.342737 | 2_1:-77364841 | None:intergenic |
| GCATTCTCTGTATTCTGTTT+CGG | 0.343224 | 2_1:+77365543 | Msa0226900:CDS |
| TGATCTCTCTCAGGGGCTAT+TGG | 0.355364 | 2_1:+77367342 | Msa0226900:intron |
| AAGAGCTAGAAACCCGGATA+TGG | 0.362853 | 2_1:-77367410 | None:intergenic |
| TTCTGTGCTACTTTGGTAGA+TGG | 0.368322 | 2_1:-77364463 | None:intergenic |
| CAAAGTAGCACAGAAGTCTT+TGG | 0.372653 | 2_1:+77364471 | Msa0226900:CDS |
| CCTTTCCAGTTGGGCAAGTA+AGG | 0.379363 | 2_1:+77367386 | Msa0226900:CDS |
| CTAGTCTTCTACTTCCTAGT+AGG | 0.383306 | 2_1:+77366584 | Msa0226900:CDS |
| AAGTTTCAAGTGTAGTAATA+GGG | 0.389774 | 2_1:+77367573 | Msa0226900:CDS |
| ATGGACCTTACTTGCCCAAC+TGG | 0.401481 | 2_1:-77367391 | None:intergenic |
| AGCTACCCGAGTAGCATTGC+TGG | 0.405454 | 2_1:-77365404 | None:intergenic |
| TGCTAGTTGTTGCCACTTTG+TGG | 0.411825 | 2_1:+77366684 | Msa0226900:CDS |
| AGAAACATTAGCTTGCTTGC+AGG | 0.422021 | 2_1:+77364545 | Msa0226900:CDS |
| GGGCAAGTAAGGTCCATATC+CGG | 0.428566 | 2_1:+77367397 | Msa0226900:CDS |
| TTACAGCACTTCTCAAATGC+TGG | 0.430658 | 2_1:+77364808 | Msa0226900:intron |
| GTATGTATGAAAGGCTATAT+AGG | 0.432440 | 2_1:-77367045 | None:intergenic |
| CAAAGACTTCTGTGCTACTT+TGG | 0.448650 | 2_1:-77364470 | None:intergenic |
| TTCCACTTCGAACTACTGTC+GGG | 0.457616 | 2_1:-77367454 | None:intergenic |
| ACAGCCAAAACTTGATCAAA+AGG | 0.460388 | 2_1:-77367653 | None:intergenic |
| ACTGATCTTCCAGCCCTACT+AGG | 0.462381 | 2_1:-77366598 | None:intergenic |
| CTTCTACTTCCTAGTAGGGC+TGG | 0.466823 | 2_1:+77366589 | Msa0226900:CDS |
| CATTCGAAAGCAGACAAATA+CGG | 0.470590 | 2_1:-77364503 | None:intergenic |
| TTTCCACTTCGAACTACTGT+CGG | 0.479182 | 2_1:-77367455 | None:intergenic |
| AGAATTCGAAGTACTTTGCC+AGG | 0.479972 | 2_1:+77366999 | Msa0226900:CDS |
| CGCACTTATGAAAGAAATCA+AGG | 0.483747 | 2_1:+77365774 | Msa0226900:CDS |
| TACAACAGATACAAGTTGAT+AGG | 0.490049 | 2_1:+77367597 | Msa0226900:exon |
| TATTAGTTGTGTCAAGGGAA+TGG | 0.490070 | 2_1:+77365446 | Msa0226900:CDS |
| TAGGCACCTCCTTTCCAGTT+GGG | 0.490080 | 2_1:+77367377 | Msa0226900:CDS |
| CACCCTGGCAATGCTTAAAA+GGG | 0.492709 | 2_1:-77365749 | None:intergenic |
| CTAGGCACCTCCTTTCCAGT+TGG | 0.493307 | 2_1:+77367376 | Msa0226900:CDS |
| GTGGTCATGATGCTGTCAGC+TGG | 0.505140 | 2_1:+77366969 | Msa0226900:CDS |
| CGTATTTGTCTGCTTTCGAA+TGG | 0.506775 | 2_1:+77364504 | Msa0226900:CDS |
| GGATACATCCACACTGGTCC+TGG | 0.509120 | 2_1:-77367017 | None:intergenic |
| ATCTTTATTAGTTGTGTCAA+GGG | 0.513800 | 2_1:+77365441 | Msa0226900:CDS |
| TTGATTTCTTTCATAAGTGC+GGG | 0.515517 | 2_1:-77365772 | None:intergenic |
| TAGTCTTCTACTTCCTAGTA+GGG | 0.517066 | 2_1:+77366585 | Msa0226900:CDS |
| GGAAAGCCAGCAATGCTACT+CGG | 0.521618 | 2_1:+77365398 | Msa0226900:CDS |
| GGCAAGTAAGGTCCATATCC+GGG | 0.523860 | 2_1:+77367398 | Msa0226900:CDS |
| GATCTTTATTAGTTGTGTCA+AGG | 0.526647 | 2_1:+77365440 | Msa0226900:CDS |
| GCGGCTATAAGATACCTTCT+CGG | 0.528833 | 2_1:-77365188 | None:intergenic |
| CTGAATAGAGTATGTATGAA+AGG | 0.532827 | 2_1:-77367054 | None:intergenic |
| CTTGATTTCTTTCATAAGTG+CGG | 0.538870 | 2_1:-77365773 | None:intergenic |
| ATGACTCTGCTACTGAATGA+AGG | 0.547375 | 2_1:+77366656 | Msa0226900:CDS |
| GTCCAGCTCTGAAAAGCAAA+GGG | 0.551166 | 2_1:+77365377 | Msa0226900:CDS |
| GAAAGCCAGCAATGCTACTC+GGG | 0.551726 | 2_1:+77365399 | Msa0226900:CDS |
| GAAGACTAGACTTGACGTAA+TGG | 0.552761 | 2_1:-77366570 | None:intergenic |
| TTTCATAAGTGCGGGCACCC+TGG | 0.554642 | 2_1:-77365764 | None:intergenic |
| ATGCTCCTCACACTGTGCAT+TGG | 0.554761 | 2_1:+77365499 | Msa0226900:CDS |
| ATACAGAGAATGCCCTAGAC+CGG | 0.557108 | 2_1:-77365533 | None:intergenic |
| CCTTACTTGCCCAACTGGAA+AGG | 0.578671 | 2_1:-77367386 | None:intergenic |
| GGTCCAGCTCTGAAAAGCAA+AGG | 0.584333 | 2_1:+77365376 | Msa0226900:CDS |
| CAACTGGAAAGGAGGTGCCT+AGG | 0.588278 | 2_1:-77367375 | None:intergenic |
| GCGCGCAGAAAATGATCAGA+AGG | 0.596770 | 2_1:-77364856 | None:intergenic |
| TGAAAGGCTATATAGGACAT+TGG | 0.597771 | 2_1:-77367038 | None:intergenic |
| TCCACTTCGAACTACTGTCG+GGG | 0.598339 | 2_1:-77367453 | None:intergenic |
| GAAAACATCTTGCCACAAAG+TGG | 0.602418 | 2_1:-77366696 | None:intergenic |
| TACTTGCCCAACTGGAAAGG+AGG | 0.612069 | 2_1:-77367383 | None:intergenic |
| GATTCTGAAACTCACCGAGA+AGG | 0.614809 | 2_1:+77365174 | Msa0226900:CDS |
| CAGTACCAATGCACAGTGTG+AGG | 0.623464 | 2_1:-77365504 | None:intergenic |
| GGACTTTGCATGATTGGACA+AGG | 0.626165 | 2_1:-77364835 | None:intergenic |
| TCATCCTAATAGGATGACAA+TGG | 0.631220 | 2_1:+77365055 | Msa0226900:intron |
| GACATTGGATACATCCACAC+TGG | 0.662440 | 2_1:-77367023 | None:intergenic |
| CCACTTCGAACTACTGTCGG+GGG | 0.666088 | 2_1:-77367452 | None:intergenic |
| CTATTGGAGAATGAGTACCT+AGG | 0.704602 | 2_1:+77367358 | Msa0226900:CDS |
| GTACTTTGCCAGGACCAGTG+TGG | 0.715583 | 2_1:+77367009 | Msa0226900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTTTTTCATAT+AGG | - | chr2_1:77366239-77366258 | None:intergenic | 10.0% |
| !!! | ATTTTATTATTTTTATTCGT+AGG | + | chr2_1:77367529-77367548 | Msa0226900:CDS | 10.0% |
| !!! | TTTTATTATTTTTATTCGTA+GGG | + | chr2_1:77367530-77367549 | Msa0226900:CDS | 10.0% |
| !! | TATTAAAATTAATAGAGCAA+TGG | - | chr2_1:77364995-77365014 | None:intergenic | 15.0% |
| !!! | ACATATTTTTAAAATGTAGT+AGG | + | chr2_1:77365894-77365913 | Msa0226900:intron | 15.0% |
| !!! | TTATCTTTTGTTATAGAAAT+AGG | + | chr2_1:77366271-77366290 | Msa0226900:intron | 15.0% |
| !! | CAAAATTAAACTCTTATAAA+TGG | - | chr2_1:77366766-77366785 | None:intergenic | 15.0% |
| !!! | TAAAACATTATTGATTTTCC+AGG | + | chr2_1:77365351-77365370 | Msa0226900:intron | 20.0% |
| !! | ACAAACATATCTACAATTAT+TGG | - | chr2_1:77365642-77365661 | None:intergenic | 20.0% |
| !! | TTTAAAAATATGTGCCAAAT+GGG | - | chr2_1:77365887-77365906 | None:intergenic | 20.0% |
| !!! | TTTTAAAAATATGTGCCAAA+TGG | - | chr2_1:77365888-77365907 | None:intergenic | 20.0% |
| !!! | TAATAGACGTCTTATTTTAA+TGG | + | chr2_1:77366377-77366396 | Msa0226900:intron | 20.0% |
| ! | TATGGTATTCGTAAAGAAAA+CGG | - | chr2_1:77364635-77364654 | None:intergenic | 25.0% |
| ! | TTACGAATACCATAGTATAA+AGG | + | chr2_1:77364641-77364660 | Msa0226900:intron | 25.0% |
| !!! | CGTTTTTAACTAAAAGAAAG+TGG | - | chr2_1:77364667-77364686 | None:intergenic | 25.0% |
| !!! | TTTTAGTTAAAAACGACTGT+TGG | + | chr2_1:77364672-77364691 | Msa0226900:intron | 25.0% |
| !!! | CAAGAACTTTCCTTTTTTTT+TGG | + | chr2_1:77364720-77364739 | Msa0226900:intron | 25.0% |
| ! | TAATTGCTATGTGTAAAAAC+TGG | + | chr2_1:77364902-77364921 | Msa0226900:CDS | 25.0% |
| !! | ATTAACGTTTTCATCCTAAT+AGG | + | chr2_1:77365045-77365064 | Msa0226900:intron | 25.0% |
| ! | ATGTAATATGGTATTTGTGA+AGG | - | chr2_1:77365269-77365288 | None:intergenic | 25.0% |
| ! | ATCTTTATTAGTTGTGTCAA+GGG | + | chr2_1:77365441-77365460 | Msa0226900:CDS | 25.0% |
| ! | ACTTTATTGCATGCATAATA+AGG | - | chr2_1:77365851-77365870 | None:intergenic | 25.0% |
| ! | ATGCGTGAATATATTATTCA+GGG | + | chr2_1:77366082-77366101 | Msa0226900:intron | 25.0% |
| !! | GCAGATTTTATAAGCTATTA+TGG | - | chr2_1:77366210-77366229 | None:intergenic | 25.0% |
| !! | GTGATTACAATAAAGCTTTT+AGG | + | chr2_1:77366903-77366922 | Msa0226900:intron | 25.0% |
| !! | AAAGTTTCAAGTGTAGTAAT+AGG | + | chr2_1:77367572-77367591 | Msa0226900:CDS | 25.0% |
| !! | AAGTTTCAAGTGTAGTAATA+GGG | + | chr2_1:77367573-77367592 | Msa0226900:CDS | 25.0% |
| !! | AATTCCTTTTGATCAAGTTT+TGG | + | chr2_1:77367649-77367668 | Msa0226900:three_prime_UTR | 25.0% |
| AATGGAAATACGTTGTTCTT+TGG | + | chr2_1:77364522-77364541 | Msa0226900:CDS | 30.0% | |
| ! | GTTGGTTTAGCCAAAAAAAA+AGG | - | chr2_1:77364733-77364752 | None:intergenic | 30.0% |
| ! | AGATTTTTCTTCCGTAAACA+TGG | + | chr2_1:77365078-77365097 | Msa0226900:CDS | 30.0% |
| ! | AGAAGTTCTAACTTGTATAG+CGG | - | chr2_1:77365210-77365229 | None:intergenic | 30.0% |
| AGTTAGAACTTCTGTTAATG+TGG | + | chr2_1:77365217-77365236 | Msa0226900:intron | 30.0% | |
| TAATATGGTATTTGTGAAGG+AGG | - | chr2_1:77365266-77365285 | None:intergenic | 30.0% | |
| TTCATGGGAAACATGTAATA+TGG | - | chr2_1:77365281-77365300 | None:intergenic | 30.0% | |
| CATAAAAGATAGCTCTTCAT+GGG | - | chr2_1:77365296-77365315 | None:intergenic | 30.0% | |
| ACATAAAAGATAGCTCTTCA+TGG | - | chr2_1:77365297-77365316 | None:intergenic | 30.0% | |
| ! | TGAAGAGCTATCTTTTATGT+TGG | + | chr2_1:77365297-77365316 | Msa0226900:intron | 30.0% |
| !!! | ACATTATTGATTTTCCAGGA+AGG | + | chr2_1:77365355-77365374 | Msa0226900:intron | 30.0% |
| GATCTTTATTAGTTGTGTCA+AGG | + | chr2_1:77365440-77365459 | Msa0226900:CDS | 30.0% | |
| ! | TTCATCATGCTTTAAATTGC+AGG | + | chr2_1:77365687-77365706 | Msa0226900:intron | 30.0% |
| TTGATTTCTTTCATAAGTGC+GGG | - | chr2_1:77365775-77365794 | None:intergenic | 30.0% | |
| CTTGATTTCTTTCATAAGTG+CGG | - | chr2_1:77365776-77365795 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTATTTGCCCATT+TGG | + | chr2_1:77365870-77365889 | Msa0226900:intron | 30.0% |
| ! | GTACTAATACCTGGAAATTT+TGG | + | chr2_1:77365919-77365938 | Msa0226900:intron | 30.0% |
| !!! | TTCTTTGTCACTTTTGTTCT+TGG | - | chr2_1:77366050-77366069 | None:intergenic | 30.0% |
| CATGCGTGAATATATTATTC+AGG | + | chr2_1:77366081-77366100 | Msa0226900:intron | 30.0% | |
| ACAATTCAATTAAGCGCTTA+TGG | - | chr2_1:77366335-77366354 | None:intergenic | 30.0% | |
| ATAAGACGTCTATTACTACA+AGG | - | chr2_1:77366372-77366391 | None:intergenic | 30.0% | |
| TGAATAATTTACTCTTCTGC+AGG | + | chr2_1:77366454-77366473 | Msa0226900:intron | 30.0% | |
| ATGGAGATGAGAAAAAGAAA+CGG | - | chr2_1:77366554-77366573 | None:intergenic | 30.0% | |
| TGTAAAGTCACATATATCAG+TGG | - | chr2_1:77366828-77366847 | None:intergenic | 30.0% | |
| GTATGTATGAAAGGCTATAT+AGG | - | chr2_1:77367048-77367067 | None:intergenic | 30.0% | |
| CTGAATAGAGTATGTATGAA+AGG | - | chr2_1:77367057-77367076 | None:intergenic | 30.0% | |
| CTTTCATACATACTCTATTC+AGG | + | chr2_1:77367055-77367074 | Msa0226900:CDS | 30.0% | |
| GACATCGTTGTGAAATAAAT+CGG | + | chr2_1:77367192-77367211 | Msa0226900:intron | 30.0% | |
| CAGTGATTATACCTATTGTT+TGG | + | chr2_1:77367243-77367262 | Msa0226900:intron | 30.0% | |
| ! | CTGAGTGAATAATTTGCAAA+TGG | + | chr2_1:77367272-77367291 | Msa0226900:intron | 30.0% |
| !!! | TCTGTTGGTTTTGTTTCTTA+TGG | + | chr2_1:77367480-77367499 | Msa0226900:CDS | 30.0% |
| ! | ACACTTGAAACTTTTAAGCA+GGG | - | chr2_1:77367566-77367585 | None:intergenic | 30.0% |
| ! | TACACTTGAAACTTTTAAGC+AGG | - | chr2_1:77367567-77367586 | None:intergenic | 30.0% |
| !! | TACAACAGATACAAGTTGAT+AGG | + | chr2_1:77367597-77367616 | Msa0226900:exon | 30.0% |
| CATTCGAAAGCAGACAAATA+CGG | - | chr2_1:77364506-77364525 | None:intergenic | 35.0% | |
| CATCCGAAATCAAATTTACG+CGG | - | chr2_1:77364600-77364619 | None:intergenic | 35.0% | |
| AGAAAGTGGCCTTTATACTA+TGG | - | chr2_1:77364653-77364672 | None:intergenic | 35.0% | |
| AAACCAACTCTGCTAGTAAA+TGG | + | chr2_1:77364745-77364764 | Msa0226900:intron | 35.0% | |
| AATCCATTTACTAGCAGAGT+TGG | - | chr2_1:77364751-77364770 | None:intergenic | 35.0% | |
| TCATCCTAATAGGATGACAA+TGG | + | chr2_1:77365055-77365074 | Msa0226900:intron | 35.0% | |
| ATCTCCATTGTCATCCTATT+AGG | - | chr2_1:77365062-77365081 | None:intergenic | 35.0% | |
| TATTAGTTGTGTCAAGGGAA+TGG | + | chr2_1:77365446-77365465 | Msa0226900:CDS | 35.0% | |
| CAAGGGAATGGAAATATTAC+TGG | + | chr2_1:77365458-77365477 | Msa0226900:CDS | 35.0% | |
| !! | TGCATTGGTACTGTATTTTC+CGG | + | chr2_1:77365514-77365533 | Msa0226900:CDS | 35.0% |
| GCATTCTCTGTATTCTGTTT+CGG | + | chr2_1:77365543-77365562 | Msa0226900:CDS | 35.0% | |
| CGCACTTATGAAAGAAATCA+AGG | + | chr2_1:77365774-77365793 | Msa0226900:CDS | 35.0% | |
| CATGCATAATAAGGACATGA+AGG | - | chr2_1:77365842-77365861 | None:intergenic | 35.0% | |
| TAGTAGGTAGTACTAATACC+TGG | + | chr2_1:77365910-77365929 | Msa0226900:intron | 35.0% | |
| !! | TATGCCTTTGACATTGACTT+AGG | + | chr2_1:77365961-77365980 | Msa0226900:intron | 35.0% |
| AACACCTAAGTCAATGTCAA+AGG | - | chr2_1:77365968-77365987 | None:intergenic | 35.0% | |
| ACTTAGGTGTTAGTATGTGT+TGG | + | chr2_1:77365977-77365996 | Msa0226900:intron | 35.0% | |
| TATATTATTCAGGGCCTCTA+TGG | + | chr2_1:77366091-77366110 | Msa0226900:intron | 35.0% | |
| GCAAATAAACCAATCCATAG+AGG | - | chr2_1:77366108-77366127 | None:intergenic | 35.0% | |
| AAGCTATTATGGAGAGCTTA+TGG | - | chr2_1:77366199-77366218 | None:intergenic | 35.0% | |
| ATAGGTTATACACAAGCACT+TGG | + | chr2_1:77366289-77366308 | Msa0226900:intron | 35.0% | |
| TTGAATTGTTTATCCCGAGA+TGG | + | chr2_1:77366346-77366365 | Msa0226900:intron | 35.0% | |
| CTCAATCTTTCACAGATTAC+AGG | - | chr2_1:77366429-77366448 | None:intergenic | 35.0% | |
| CTGTAATCTGTGAAAGATTG+AGG | + | chr2_1:77366427-77366446 | Msa0226900:intron | 35.0% | |
| TAGTCTTCTACTTCCTAGTA+GGG | + | chr2_1:77366585-77366604 | Msa0226900:CDS | 35.0% | |
| TAATCACGTGCAACGAAATA+TGG | - | chr2_1:77366890-77366909 | None:intergenic | 35.0% | |
| TGAAAGGCTATATAGGACAT+TGG | - | chr2_1:77367041-77367060 | None:intergenic | 35.0% | |
| AATAGGTATAATCACTGCAG+TGG | - | chr2_1:77367240-77367259 | None:intergenic | 35.0% | |
| !! | CTCAGTTTTGTCCAAACAAT+AGG | - | chr2_1:77367257-77367276 | None:intergenic | 35.0% |
| !!! | TACTTGTTTTGATCTCTCTC+AGG | + | chr2_1:77367333-77367352 | Msa0226900:intron | 35.0% |
| !!! | ACTTGTTTTGATCTCTCTCA+GGG | + | chr2_1:77367334-77367353 | Msa0226900:intron | 35.0% |
| !! | ATTTTGAAGAGCTAGAAACC+CGG | - | chr2_1:77367419-77367438 | None:intergenic | 35.0% |
| TTCGAAGTGGAAAAATCTGT+TGG | + | chr2_1:77367465-77367484 | Msa0226900:CDS | 35.0% | |
| !!! | GTTTTGTTTCTTATGGCGAT+AGG | + | chr2_1:77367487-77367506 | Msa0226900:CDS | 35.0% |
| ACAGCCAAAACTTGATCAAA+AGG | - | chr2_1:77367656-77367675 | None:intergenic | 35.0% | |
| !! | TTCTGTGCTACTTTGGTAGA+TGG | - | chr2_1:77364466-77364485 | None:intergenic | 40.0% |
| !! | CAAAGACTTCTGTGCTACTT+TGG | - | chr2_1:77364473-77364492 | None:intergenic | 40.0% |
| CAAAGTAGCACAGAAGTCTT+TGG | + | chr2_1:77364471-77364490 | Msa0226900:CDS | 40.0% | |
| CGTATTTGTCTGCTTTCGAA+TGG | + | chr2_1:77364504-77364523 | Msa0226900:CDS | 40.0% | |
| !! | AGAAACATTAGCTTGCTTGC+AGG | + | chr2_1:77364545-77364564 | Msa0226900:CDS | 40.0% |
| GAAATCAAATTTACGCGGAG+GGG | - | chr2_1:77364595-77364614 | None:intergenic | 40.0% | |
| CGAAATCAAATTTACGCGGA+GGG | - | chr2_1:77364596-77364615 | None:intergenic | 40.0% | |
| ! | CCTCCGCGTAAATTTGATTT+CGG | + | chr2_1:77364594-77364613 | Msa0226900:intron | 40.0% |
| TTACAGCACTTCTCAAATGC+TGG | + | chr2_1:77364808-77364827 | Msa0226900:intron | 40.0% | |
| TCAGAAGGACTTTGCATGAT+TGG | - | chr2_1:77364844-77364863 | None:intergenic | 40.0% | |
| TGCTATGTGTAAAAACTGGC+AGG | + | chr2_1:77364906-77364925 | Msa0226900:CDS | 40.0% | |
| AACAGCAGTGTCCATGTTTA+CGG | - | chr2_1:77365092-77365111 | None:intergenic | 40.0% | |
| ! | GTACTGTATTTTCCGGTCTA+GGG | + | chr2_1:77365521-77365540 | Msa0226900:CDS | 40.0% |
| !! | TTCCCTTTTAAGCATTGCCA+GGG | + | chr2_1:77365747-77365766 | Msa0226900:CDS | 40.0% |
| GTGTCAGTACCAAAATTTCC+AGG | - | chr2_1:77365931-77365950 | None:intergenic | 40.0% | |
| ! | ACTTTTGTTCTTGGAGAGAC+TGG | - | chr2_1:77366041-77366060 | None:intergenic | 40.0% |
| TATTACTACAAGGCCATCTC+GGG | - | chr2_1:77366362-77366381 | None:intergenic | 40.0% | |
| CTATTACTACAAGGCCATCT+CGG | - | chr2_1:77366363-77366382 | None:intergenic | 40.0% | |
| GAGAAAAAGAAACGGAATGC+TGG | - | chr2_1:77366546-77366565 | None:intergenic | 40.0% | |
| GAAGACTAGACTTGACGTAA+TGG | - | chr2_1:77366573-77366592 | None:intergenic | 40.0% | |
| ! | CTAGTCTTCTACTTCCTAGT+AGG | + | chr2_1:77366584-77366603 | Msa0226900:CDS | 40.0% |
| ATGACTCTGCTACTGAATGA+AGG | + | chr2_1:77366656-77366675 | Msa0226900:CDS | 40.0% | |
| GAAAACATCTTGCCACAAAG+TGG | - | chr2_1:77366699-77366718 | None:intergenic | 40.0% | |
| ! | CTTTGTGGCAAGATGTTTTC+TGG | + | chr2_1:77366699-77366718 | Msa0226900:intron | 40.0% |
| TATGTGTGAGTACTTCGTTC+AGG | - | chr2_1:77366934-77366953 | None:intergenic | 40.0% | |
| ACACATATGTACGCCATTTC+AGG | + | chr2_1:77366947-77366966 | Msa0226900:intron | 40.0% | |
| ! | AGAATTCGAAGTACTTTGCC+AGG | + | chr2_1:77366999-77367018 | Msa0226900:CDS | 40.0% |
| !!! | CTTGTTTTGATCTCTCTCAG+GGG | + | chr2_1:77367335-77367354 | Msa0226900:intron | 40.0% |
| CTATTGGAGAATGAGTACCT+AGG | + | chr2_1:77367358-77367377 | Msa0226900:CDS | 40.0% | |
| TTTCCACTTCGAACTACTGT+CGG | - | chr2_1:77367458-77367477 | None:intergenic | 40.0% | |
| CCGAAATCAAATTTACGCGG+AGG | - | chr2_1:77364597-77364616 | None:intergenic | 45.0% | |
| GGACTTTGCATGATTGGACA+AGG | - | chr2_1:77364838-77364857 | None:intergenic | 45.0% | |
| !! | GATTCTGAAACTCACCGAGA+AGG | + | chr2_1:77365174-77365193 | Msa0226900:CDS | 45.0% |
| GCGGCTATAAGATACCTTCT+CGG | - | chr2_1:77365191-77365210 | None:intergenic | 45.0% | |
| TTTGTGAAGGAGGAGACTAG+TGG | - | chr2_1:77365256-77365275 | None:intergenic | 45.0% | |
| !! | GTCCAGCTCTGAAAAGCAAA+GGG | + | chr2_1:77365377-77365396 | Msa0226900:CDS | 45.0% |
| !! | TTCCCTTTGCTTTTCAGAGC+TGG | - | chr2_1:77365382-77365401 | None:intergenic | 45.0% |
| ! | GGTACTGTATTTTCCGGTCT+AGG | + | chr2_1:77365520-77365539 | Msa0226900:CDS | 45.0% |
| ATACAGAGAATGCCCTAGAC+CGG | - | chr2_1:77365536-77365555 | None:intergenic | 45.0% | |
| !! | GTTCCCTTTTAAGCATTGCC+AGG | + | chr2_1:77365746-77365765 | Msa0226900:CDS | 45.0% |
| CACCCTGGCAATGCTTAAAA+GGG | - | chr2_1:77365752-77365771 | None:intergenic | 45.0% | |
| TATTCAGGGCCTCTATGGAT+TGG | + | chr2_1:77366096-77366115 | Msa0226900:intron | 45.0% | |
| !! | TGCTAGTTGTTGCCACTTTG+TGG | + | chr2_1:77366684-77366703 | Msa0226900:CDS | 45.0% |
| CATATGTACGCCATTTCAGG+TGG | + | chr2_1:77366950-77366969 | Msa0226900:intron | 45.0% | |
| AGCATCATGACCACCTGAAA+TGG | - | chr2_1:77366963-77366982 | None:intergenic | 45.0% | |
| GACATTGGATACATCCACAC+TGG | - | chr2_1:77367026-77367045 | None:intergenic | 45.0% | |
| AAGAGCTAGAAACCCGGATA+TGG | - | chr2_1:77367413-77367432 | None:intergenic | 45.0% | |
| TTCCACTTCGAACTACTGTC+GGG | - | chr2_1:77367457-77367476 | None:intergenic | 45.0% | |
| ATTTACGCGGAGGGGAAGAA+AGG | - | chr2_1:77364587-77364606 | None:intergenic | 50.0% | |
| GCGCGCAGAAAATGATCAGA+AGG | - | chr2_1:77364859-77364878 | None:intergenic | 50.0% | |
| ! | TTTTCAGAGCTGGACCTTCC+TGG | - | chr2_1:77365372-77365391 | None:intergenic | 50.0% |
| !! | GGTCCAGCTCTGAAAAGCAA+AGG | + | chr2_1:77365376-77365395 | Msa0226900:CDS | 50.0% |
| GGAAAGCCAGCAATGCTACT+CGG | + | chr2_1:77365398-77365417 | Msa0226900:CDS | 50.0% | |
| GAAAGCCAGCAATGCTACTC+GGG | + | chr2_1:77365399-77365418 | Msa0226900:CDS | 50.0% | |
| !!! | CTCGGGTAGCTGTTTTGACA+TGG | + | chr2_1:77365416-77365435 | Msa0226900:CDS | 50.0% |
| ATGCTCCTCACACTGTGCAT+TGG | + | chr2_1:77365499-77365518 | Msa0226900:CDS | 50.0% | |
| CAGTACCAATGCACAGTGTG+AGG | - | chr2_1:77365507-77365526 | None:intergenic | 50.0% | |
| GCACCCTGGCAATGCTTAAA+AGG | - | chr2_1:77365753-77365772 | None:intergenic | 50.0% | |
| CTTCTACTTCCTAGTAGGGC+TGG | + | chr2_1:77366589-77366608 | Msa0226900:CDS | 50.0% | |
| ACTGATCTTCCAGCCCTACT+AGG | - | chr2_1:77366601-77366620 | None:intergenic | 50.0% | |
| TGATCTCTCTCAGGGGCTAT+TGG | + | chr2_1:77367342-77367361 | Msa0226900:intron | 50.0% | |
| TAGGCACCTCCTTTCCAGTT+GGG | + | chr2_1:77367377-77367396 | Msa0226900:CDS | 50.0% | |
| TACTTGCCCAACTGGAAAGG+AGG | - | chr2_1:77367386-77367405 | None:intergenic | 50.0% | |
| CCTTACTTGCCCAACTGGAA+AGG | - | chr2_1:77367389-77367408 | None:intergenic | 50.0% | |
| CCTTTCCAGTTGGGCAAGTA+AGG | + | chr2_1:77367386-77367405 | Msa0226900:CDS | 50.0% | |
| ATGGACCTTACTTGCCCAAC+TGG | - | chr2_1:77367394-77367413 | None:intergenic | 50.0% | |
| GGGCAAGTAAGGTCCATATC+CGG | + | chr2_1:77367397-77367416 | Msa0226900:CDS | 50.0% | |
| GGCAAGTAAGGTCCATATCC+GGG | + | chr2_1:77367398-77367417 | Msa0226900:CDS | 50.0% | |
| TCCACTTCGAACTACTGTCG+GGG | - | chr2_1:77367456-77367475 | None:intergenic | 50.0% | |
| AGCTACCCGAGTAGCATTGC+TGG | - | chr2_1:77365407-77365426 | None:intergenic | 55.0% | |
| TTTCATAAGTGCGGGCACCC+TGG | - | chr2_1:77365767-77365786 | None:intergenic | 55.0% | |
| ! | GTTGGTCTCTTTGCCGTGCT+TGG | + | chr2_1:77365995-77366014 | Msa0226900:intron | 55.0% |
| AGTGCTTGCTTCGCCAAGCA+CGG | - | chr2_1:77366011-77366030 | None:intergenic | 55.0% | |
| GTGGTCATGATGCTGTCAGC+TGG | + | chr2_1:77366969-77366988 | Msa0226900:CDS | 55.0% | |
| GTACTTTGCCAGGACCAGTG+TGG | + | chr2_1:77367009-77367028 | Msa0226900:CDS | 55.0% | |
| GGATACATCCACACTGGTCC+TGG | - | chr2_1:77367020-77367039 | None:intergenic | 55.0% | |
| !! | CAACTGGAAAGGAGGTGCCT+AGG | - | chr2_1:77367378-77367397 | None:intergenic | 55.0% |
| CTAGGCACCTCCTTTCCAGT+TGG | + | chr2_1:77367376-77367395 | Msa0226900:CDS | 55.0% | |
| CCACTTCGAACTACTGTCGG+GGG | - | chr2_1:77367455-77367474 | None:intergenic | 55.0% | |
| CCCCCGACAGTAGTTCGAAG+TGG | + | chr2_1:77367452-77367471 | Msa0226900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 77364447 | 77367714 | 77364447 | ID=Msa0226900;Name=Msa0226900 |
| chr2_1 | mRNA | 77364447 | 77367714 | 77364447 | ID=Msa0226900-mRNA-1;Parent=Msa0226900;Name=Msa0226900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.85|0.87|1|0.71|0.75|8|99|415 |
| chr2_1 | exon | 77364447 | 77364566 | 77364447 | ID=Msa0226900-mRNA-1:exon:23533;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77364814 | 77364927 | 77364814 | ID=Msa0226900-mRNA-1:exon:23534;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77365067 | 77365195 | 77365067 | ID=Msa0226900-mRNA-1:exon:23535;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77365373 | 77365564 | 77365373 | ID=Msa0226900-mRNA-1:exon:23536;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77365709 | 77365795 | 77365709 | ID=Msa0226900-mRNA-1:exon:23537;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77366476 | 77366712 | 77366476 | ID=Msa0226900-mRNA-1:exon:23538;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77366969 | 77367076 | 77366969 | ID=Msa0226900-mRNA-1:exon:23539;Parent=Msa0226900-mRNA-1 |
| chr2_1 | exon | 77367355 | 77367714 | 77367355 | ID=Msa0226900-mRNA-1:exon:23540;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77364447 | 77364566 | 77364447 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77364814 | 77364927 | 77364814 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77365067 | 77365195 | 77365067 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77365373 | 77365564 | 77365373 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77365709 | 77365795 | 77365709 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77366476 | 77366712 | 77366476 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77366969 | 77367076 | 77366969 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | CDS | 77367355 | 77367615 | 77367355 | ID=Msa0226900-mRNA-1:cds;Parent=Msa0226900-mRNA-1 |
| chr2_1 | three_prime_UTR | 77367616 | 77367714 | 77367616 | ID=Msa0226900-mRNA-1:three_prime_utr;Parent=Msa0226900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
