Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226940 | XP_024633021.1 | 98.272 | 463 | 8 | 0 | 210 | 672 | 25 | 487 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226940 | sp|Q9M8L9|AVT6E_ARATH | 76.644 | 441 | 102 | 1 | 233 | 672 | 48 | 488 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226940 | G7IIA0 | 98.272 | 463 | 8 | 0 | 210 | 672 | 25 | 487 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0226940 | Msa0380040 | -0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0226940 | Msa0471720 | 0.802219 | 6.224967e-49 | -8.615850e-47 |
| Msa0226940 | Msa0967650 | 0.802722 | 4.901309e-49 | -8.615850e-47 |
| Msa0226940 | Msa1072460 | 0.802423 | 5.650984e-49 | -8.615850e-47 |
| Msa0226940 | Msa1119250 | 0.805479 | 1.308467e-49 | -8.615850e-47 |
| Msa0226940 | Msa1119300 | 0.805793 | 1.124448e-49 | -8.615850e-47 |
| Msa0226940 | Msa1358610 | 0.815632 | 8.370013e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226940 | MtrunA17_Chr2g0333321 | 98.272 | 463 | 8 | 0 | 210 | 672 | 25 | 487 | 0.0 | 915 |
| Msa0226940 | MtrunA17_Chr8g0366021 | 45.631 | 412 | 217 | 3 | 264 | 671 | 51 | 459 | 1.76e-116 | 357 |
| Msa0226940 | MtrunA17_Chr7g0220531 | 45.433 | 416 | 218 | 4 | 258 | 668 | 47 | 458 | 4.74e-115 | 353 |
| Msa0226940 | MtrunA17_Chr6g0455911 | 44.762 | 420 | 224 | 4 | 258 | 672 | 38 | 454 | 1.04e-109 | 339 |
| Msa0226940 | MtrunA17_Chr6g0455951 | 44.787 | 422 | 222 | 6 | 258 | 672 | 43 | 460 | 2.15e-105 | 328 |
| Msa0226940 | MtrunA17_Chr6g0455981 | 43.961 | 414 | 224 | 4 | 264 | 672 | 46 | 456 | 3.29e-104 | 325 |
| Msa0226940 | MtrunA17_Chr5g0437961 | 40.749 | 427 | 245 | 5 | 247 | 668 | 5 | 428 | 7.81e-103 | 320 |
| Msa0226940 | MtrunA17_Chr3g0114351 | 38.889 | 432 | 255 | 5 | 247 | 672 | 10 | 438 | 2.74e-100 | 314 |
| Msa0226940 | MtrunA17_Chr6g0455941 | 43.095 | 420 | 231 | 4 | 258 | 672 | 45 | 461 | 4.51e-100 | 314 |
| Msa0226940 | MtrunA17_Chr5g0437951 | 38.679 | 424 | 247 | 7 | 254 | 670 | 28 | 445 | 3.91e-93 | 295 |
| Msa0226940 | MtrunA17_Chr2g0321821 | 97.222 | 108 | 3 | 0 | 1 | 108 | 1 | 108 | 6.57e-70 | 223 |
| Msa0226940 | MtrunA17_Chr8g0366001 | 43.985 | 266 | 146 | 2 | 406 | 671 | 4 | 266 | 1.57e-67 | 222 |
| Msa0226940 | MtrunA17_Chr6g0459871 | 43.333 | 270 | 147 | 4 | 406 | 672 | 50 | 316 | 9.84e-59 | 200 |
| Msa0226940 | MtrunA17_Chr8g0365971 | 36.957 | 230 | 122 | 2 | 191 | 416 | 1 | 211 | 6.87e-38 | 140 |
| Msa0226940 | MtrunA17_Chr8g0365991 | 45.714 | 140 | 74 | 1 | 263 | 402 | 50 | 187 | 3.74e-31 | 120 |
| Msa0226940 | MtrunA17_Chr7g0267361 | 31.220 | 205 | 113 | 6 | 26 | 204 | 49 | 251 | 9.78e-22 | 95.1 |
| Msa0226940 | MtrunA17_Chr3g0114341 | 40.217 | 92 | 54 | 1 | 256 | 347 | 19 | 109 | 9.49e-17 | 77.0 |
| Msa0226940 | MtrunA17_Chr7g0267371 | 29.605 | 152 | 99 | 3 | 33 | 177 | 2 | 152 | 6.52e-15 | 73.9 |
| Msa0226940 | MtrunA17_Chr4g0025681 | 28.571 | 203 | 115 | 5 | 36 | 210 | 6 | 206 | 1.08e-14 | 73.6 |
| Msa0226940 | MtrunA17_Chr7g0267281 | 31.579 | 152 | 91 | 4 | 35 | 173 | 19 | 170 | 7.87e-13 | 68.6 |
| Msa0226940 | MtrunA17_Chr2g0321831 | 25.581 | 215 | 134 | 5 | 22 | 213 | 3 | 214 | 3.63e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0226940 | AT1G80510.1 | 76.644 | 441 | 102 | 1 | 233 | 672 | 48 | 488 | 0.0 | 667 |
| Msa0226940 | AT3G30390.1 | 45.107 | 419 | 223 | 3 | 258 | 672 | 41 | 456 | 7.75e-120 | 365 |
| Msa0226940 | AT3G30390.3 | 45.107 | 419 | 223 | 3 | 258 | 672 | 41 | 456 | 7.75e-120 | 365 |
| Msa0226940 | AT3G30390.2 | 45.107 | 419 | 223 | 3 | 258 | 672 | 41 | 456 | 7.75e-120 | 365 |
| Msa0226940 | AT5G38820.2 | 45.238 | 420 | 221 | 4 | 258 | 671 | 38 | 454 | 1.18e-117 | 360 |
| Msa0226940 | AT5G38820.1 | 45.238 | 420 | 221 | 4 | 258 | 671 | 33 | 449 | 1.42e-117 | 359 |
| Msa0226940 | AT5G38820.3 | 45.238 | 420 | 221 | 4 | 258 | 671 | 33 | 449 | 1.42e-117 | 359 |
| Msa0226940 | AT3G56200.1 | 39.618 | 419 | 246 | 3 | 257 | 671 | 20 | 435 | 6.07e-97 | 305 |
| Msa0226940 | AT2G40420.1 | 38.186 | 419 | 250 | 5 | 257 | 670 | 22 | 436 | 3.24e-86 | 278 |
| Msa0226940 | AT2G27260.1 | 31.858 | 226 | 118 | 6 | 4 | 210 | 33 | 241 | 5.59e-24 | 102 |
| Msa0226940 | AT3G52460.1 | 29.224 | 219 | 115 | 7 | 23 | 203 | 73 | 289 | 1.02e-17 | 84.7 |
Find 173 sgRNAs with CRISPR-Local
Find 469 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGTTCGGTTCATCATTT+AGG | 0.170468 | 2_1:+77423319 | Msa0226940:CDS |
| AATTGTTTATTTGATTATAA+TGG | 0.179616 | 2_1:+77423285 | Msa0226940:CDS |
| CAATCTTGCTCCGTTTAAAA+TGG | 0.203609 | 2_1:+77418494 | Msa0226940:CDS |
| ATTTGACTACTACTATTATT+GGG | 0.217290 | 2_1:+77423035 | Msa0226940:CDS |
| AATTTGACTACTACTATTAT+TGG | 0.222548 | 2_1:+77423034 | Msa0226940:CDS |
| AGTTGATGGGGAATGGGGTT+TGG | 0.254515 | 2_1:+77423353 | Msa0226940:CDS |
| TATTATTGGGGCAGGAATTA+TGG | 0.256792 | 2_1:+77423048 | Msa0226940:CDS |
| CCGGTTCGGTTCATCATTTA+GGG | 0.262632 | 2_1:+77423320 | Msa0226940:CDS |
| GCAGATCATGGTGGCGAAAA+AGG | 0.267906 | 2_1:-77418238 | None:intergenic |
| ATTGTTTATTTGATTATAAT+GGG | 0.268720 | 2_1:+77423286 | Msa0226940:CDS |
| ATTACCGTTACGGACGTTAA+AGG | 0.270763 | 2_1:-77418400 | None:intergenic |
| CCTGCTACCATGAAAGTTCT+TGG | 0.277184 | 2_1:+77423076 | Msa0226940:CDS |
| TTGTTGTAGGGTGGTGCGGC+TGG | 0.290004 | 2_1:-77418117 | None:intergenic |
| GGCGCCGTTGTGGTTGTTGT+AGG | 0.291407 | 2_1:-77418130 | None:intergenic |
| CTCTTCCTACTTTCTGATAA+AGG | 0.295674 | 2_1:-77423958 | None:intergenic |
| CGTGTGGTTGACGCTCTTAA+TGG | 0.305963 | 2_1:+77418579 | Msa0226940:CDS |
| GCTTGTGATTCTTGTTGTTA+TGG | 0.306594 | 2_1:+77423387 | Msa0226940:CDS |
| GTTGATGGGGAATGGGGTTT+GGG | 0.307539 | 2_1:+77423354 | Msa0226940:CDS |
| GATAATTATCCTCTTGTTGT+TGG | 0.311646 | 2_1:+77422968 | Msa0226940:CDS |
| CTGTCCGGTTACCTATTATT+CGG | 0.316049 | 2_1:+77423757 | Msa0226940:CDS |
| TTGATCAGTTGATGGGGAAT+GGG | 0.317412 | 2_1:+77423347 | Msa0226940:CDS |
| TTAAAAGCTGTCCAGATGTT+TGG | 0.318283 | 2_1:-77424039 | None:intergenic |
| CGTAGTGAGAAATGAATAAC+AGG | 0.324473 | 2_1:-77423898 | None:intergenic |
| TGTCCGGTTACCTATTATTC+GGG | 0.327444 | 2_1:+77423758 | Msa0226940:CDS |
| CAGTATCATCCCCGAATAAT+AGG | 0.328662 | 2_1:-77423768 | None:intergenic |
| ATTAAGATTCGCTTCAGATT+TGG | 0.328903 | 2_1:-77418520 | None:intergenic |
| ATGTGTAAAGCGTCGTCTTA+TGG | 0.330139 | 2_1:+77423181 | Msa0226940:CDS |
| GGTGCAGCGTAGGGGTATTG+AGG | 0.336348 | 2_1:-77418156 | None:intergenic |
| ACATATGCATTTGTCATGAT+TGG | 0.339398 | 2_1:-77423616 | None:intergenic |
| TTTGATCAGTTGATGGGGAA+TGG | 0.352760 | 2_1:+77423346 | Msa0226940:CDS |
| GCTGTGACTGTTAGCATTGT+AGG | 0.358697 | 2_1:+77424189 | Msa0226940:CDS |
| ATTTCGTCGAATTCGACTTC+TGG | 0.359221 | 2_1:+77418826 | Msa0226940:CDS |
| TGCAATAAGATTAAGTCATC+AGG | 0.366366 | 2_1:+77424116 | Msa0226940:CDS |
| CTGTTGGTTCTCATATATAT+CGG | 0.366555 | 2_1:+77424003 | Msa0226940:CDS |
| GTCATGGTTAATGTTGGTAT+TGG | 0.367428 | 2_1:+77424167 | Msa0226940:CDS |
| GGTACACCAGACCCGTGATT+TGG | 0.370920 | 2_1:-77422998 | None:intergenic |
| AACAACACCAAGAACTTTCA+TGG | 0.378312 | 2_1:-77423083 | None:intergenic |
| GCCACGTGCCGGTGAGGGAT+TGG | 0.389001 | 2_1:-77418371 | None:intergenic |
| GAAGCGAAGGAGCGAGGTGG+GGG | 0.391199 | 2_1:-77418198 | None:intergenic |
| GGGTGGTGCGGCTGGGTAGC+CGG | 0.395357 | 2_1:-77418109 | None:intergenic |
| GGATTGGGAGGAGGTGTTGA+AGG | 0.396178 | 2_1:-77418355 | None:intergenic |
| GGGGTGGGTTGTAGTATTGA+GGG | 0.396299 | 2_1:-77418179 | None:intergenic |
| CCACGTGCCGGTGAGGGATT+GGG | 0.398560 | 2_1:-77418370 | None:intergenic |
| TGCGGCTGGGTAGCCGGTAG+CGG | 0.410419 | 2_1:-77418103 | None:intergenic |
| CCGATATACAACGAGCTTGA+AGG | 0.427017 | 2_1:+77423658 | Msa0226940:CDS |
| TCTTGGAATCCGGTTTAGTT+CGG | 0.429060 | 2_1:+77423822 | Msa0226940:CDS |
| GTGGATACTTTGGTATTTGA+GGG | 0.430206 | 2_1:+77423928 | Msa0226940:CDS |
| CGGGAAGCGAAGGAGCGAGG+TGG | 0.432189 | 2_1:-77418201 | None:intergenic |
| GCGGCTGGGTAGCCGGTAGC+GGG | 0.438852 | 2_1:-77418102 | None:intergenic |
| TGTCCAGATGTTTGGAATCA+TGG | 0.438941 | 2_1:-77424031 | None:intergenic |
| AGTGGATACTTTGGTATTTG+AGG | 0.440264 | 2_1:+77423927 | Msa0226940:CDS |
| TGATCAGTTGATGGGGAATG+GGG | 0.440283 | 2_1:+77423348 | Msa0226940:CDS |
| CCTTCAAGCTCGTTGTATAT+CGG | 0.440630 | 2_1:-77423658 | None:intergenic |
| GGAATGGGGTTTGGGATCAG+AGG | 0.442360 | 2_1:+77423362 | Msa0226940:CDS |
| ATCTGCCTCGCCGTAATCTT+CGG | 0.443203 | 2_1:+77418255 | Msa0226940:CDS |
| TCGACTTCTGGTGAATTGAT+TGG | 0.443593 | 2_1:+77418838 | Msa0226940:CDS |
| GAAGAAGGAGCGGGAAGCGA+AGG | 0.444689 | 2_1:-77418211 | None:intergenic |
| AGTTCAAGGCCGAACTAAAC+CGG | 0.446759 | 2_1:-77423831 | None:intergenic |
| GAGGATTACGCCGAAGATTA+CGG | 0.447603 | 2_1:-77418265 | None:intergenic |
| CTTAATGGTGATAGATCAAA+AGG | 0.450193 | 2_1:+77418594 | Msa0226940:CDS |
| GTACCATGATTCCAAACATC+TGG | 0.451690 | 2_1:+77424028 | Msa0226940:CDS |
| GCCGGTGAGGGATTGGGAGG+AGG | 0.453059 | 2_1:-77418364 | None:intergenic |
| CCAGACCCGTGATTTGGAAT+AGG | 0.454182 | 2_1:-77422992 | None:intergenic |
| GCAACAACGGCTGTTTCGTT+AGG | 0.456316 | 2_1:+77424072 | Msa0226940:CDS |
| CTAAAATCAGGAACCATCCT+AGG | 0.459986 | 2_1:-77423556 | None:intergenic |
| CAGGGAAAACAAGTATCAAA+TGG | 0.460714 | 2_1:-77423879 | None:intergenic |
| GTTAGCATTGTAGGAGTTGT+CGG | 0.463076 | 2_1:+77424198 | Msa0226940:CDS |
| AGAGTGGTGAGAGTGAAGGA+TGG | 0.463181 | 2_1:-77418321 | None:intergenic |
| GAGTGGTGAGAGTGAAGGAT+GGG | 0.466612 | 2_1:-77418320 | None:intergenic |
| GGAGGTGTTGAAGGAGGAGA+GGG | 0.466911 | 2_1:-77418346 | None:intergenic |
| GAAGGAGGAGAGGGAGAGAG+TGG | 0.466931 | 2_1:-77418337 | None:intergenic |
| TTGATAAGGATCTTGGAATC+CGG | 0.468353 | 2_1:+77423812 | Msa0226940:CDS |
| ATGCTATGGGTAGGCCTGCT+AGG | 0.468880 | 2_1:+77423218 | Msa0226940:CDS |
| TGTTGTAGGGTGGTGCGGCT+GGG | 0.470936 | 2_1:-77418116 | None:intergenic |
| CCCTAAATGATGAACCGAAC+CGG | 0.471664 | 2_1:-77423320 | None:intergenic |
| AGAGTGAAGGATGGGAGAGA+AGG | 0.474786 | 2_1:-77418312 | None:intergenic |
| GGAAATTAGTGTCGAATTGT+TGG | 0.479421 | 2_1:+77423144 | Msa0226940:CDS |
| ATACCAAAGTATCCACTGTT+TGG | 0.479637 | 2_1:-77423921 | None:intergenic |
| GGGAAGCGAAGGAGCGAGGT+GGG | 0.484286 | 2_1:-77418200 | None:intergenic |
| TGTGCAGGAAAATTGATGTT+GGG | 0.488086 | 2_1:+77418803 | Msa0226940:CDS |
| GAGCTTGACTTCAGCTGCAT+CGG | 0.488598 | 2_1:+77423456 | Msa0226940:CDS |
| ACGGAGAGCGTTATAGTTAA+CGG | 0.488844 | 2_1:-77418433 | None:intergenic |
| GTGCAGCGTAGGGGTATTGA+GGG | 0.494846 | 2_1:-77418155 | None:intergenic |
| TATGCTGCAACGGCACTGTC+CGG | 0.495004 | 2_1:+77423742 | Msa0226940:CDS |
| GGTGGGTTGTAGTATTGAGG+GGG | 0.496372 | 2_1:-77418177 | None:intergenic |
| ATCCCCGAATAATAGGTAAC+CGG | 0.498976 | 2_1:-77423761 | None:intergenic |
| GAAAGTAGGAAGAGATCGCT+AGG | 0.504058 | 2_1:+77423967 | Msa0226940:CDS |
| TTGGGAGGAGGTGTTGAAGG+AGG | 0.504217 | 2_1:-77418352 | None:intergenic |
| TGTTTATTTGATTATAATGG+GGG | 0.506452 | 2_1:+77423288 | Msa0226940:CDS |
| GTTGGTCCTATTCCAAATCA+CGG | 0.506802 | 2_1:+77422986 | Msa0226940:CDS |
| GCGCCGTTGTGGTTGTTGTA+GGG | 0.508087 | 2_1:-77418129 | None:intergenic |
| CCTATTCCAAATCACGGGTC+TGG | 0.511638 | 2_1:+77422992 | Msa0226940:CDS |
| GACTCGAACGATATAGTTCA+AGG | 0.512418 | 2_1:-77423845 | None:intergenic |
| ATTGAGGGGCGGCGCCGTTG+TGG | 0.512742 | 2_1:-77418140 | None:intergenic |
| GGAAGCGAAGGAGCGAGGTG+GGG | 0.516371 | 2_1:-77418199 | None:intergenic |
| GGGTGGGTTGTAGTATTGAG+GGG | 0.516512 | 2_1:-77418178 | None:intergenic |
| GGAGAGAGTGGTGAGAGTGA+AGG | 0.518031 | 2_1:-77418325 | None:intergenic |
| TTGTGCAGGAAAATTGATGT+TGG | 0.518995 | 2_1:+77418802 | Msa0226940:CDS |
| TGGTGGAAATAGAGAATGTC+AGG | 0.522315 | 2_1:+77418858 | Msa0226940:CDS |
| GAGATTTGAGCCGCGTAGAA+CGG | 0.523045 | 2_1:+77424139 | Msa0226940:CDS |
| GCGTAATCCTCGTCATCACC+TGG | 0.523413 | 2_1:+77418277 | Msa0226940:CDS |
| CCAAGAACTTTCATGGTAGC+AGG | 0.523622 | 2_1:-77423076 | None:intergenic |
| AGGGCTGACTGCAATTCTGT+TGG | 0.526397 | 2_1:+77423987 | Msa0226940:CDS |
| CTTGACTTCAGCTGCATCGG+TGG | 0.528392 | 2_1:+77423459 | Msa0226940:CDS |
| ACGCCAAACAGTGGATACTT+TGG | 0.531176 | 2_1:+77423918 | Msa0226940:CDS |
| AATGATAGAAGATTGAAGAA+CGG | 0.531845 | 2_1:-77418452 | None:intergenic |
| AGGAGGTGTTGAAGGAGGAG+AGG | 0.533147 | 2_1:-77418347 | None:intergenic |
| ATCTCAGATAAAATCCTAGC+AGG | 0.533652 | 2_1:-77423232 | None:intergenic |
| CGCTTATCTTGATTCGCGTG+TGG | 0.536190 | 2_1:+77418563 | Msa0226940:CDS |
| AATCACGGGTCTGGTGTACC+TGG | 0.537363 | 2_1:+77423001 | Msa0226940:CDS |
| TTGTTTATTTGATTATAATG+GGG | 0.537532 | 2_1:+77423287 | Msa0226940:CDS |
| AGAAGGACGAAGGACAAGCC+AGG | 0.537553 | 2_1:-77418295 | None:intergenic |
| ATCTAAGGTTGATGATGATG+AGG | 0.540722 | 2_1:+77422922 | Msa0226940:CDS |
| AATCTTATTGCAACAAGAGG+TGG | 0.543383 | 2_1:-77424105 | None:intergenic |
| ACTACTACTATTATTGGGGC+AGG | 0.544363 | 2_1:+77423040 | Msa0226940:CDS |
| GATTACGGCGAGGCAGATCA+TGG | 0.545241 | 2_1:-77418250 | None:intergenic |
| CCCAATCCCTCACCGGCACG+TGG | 0.547558 | 2_1:+77418370 | Msa0226940:CDS |
| TGAGGTTGTTCAACATGCTA+TGG | 0.553920 | 2_1:+77423204 | Msa0226940:CDS |
| TTGGTCCTATTCCAAATCAC+GGG | 0.557232 | 2_1:+77422987 | Msa0226940:CDS |
| ACTTCTGGTGAATTGATTGG+TGG | 0.557526 | 2_1:+77418841 | Msa0226940:CDS |
| AAAGGCGCGGAAGAAGGAGC+GGG | 0.558331 | 2_1:-77418220 | None:intergenic |
| TGTGATTCTTGTTGTTATGG+TGG | 0.559947 | 2_1:+77423390 | Msa0226940:CDS |
| TTGTAGTGACCCTTCCTACT+CGG | 0.560230 | 2_1:-77423702 | None:intergenic |
| AAGGAAAGATTGATGCTCCT+AGG | 0.564135 | 2_1:+77423539 | Msa0226940:CDS |
| CACCTCCTTTATCAGAAAGT+AGG | 0.564200 | 2_1:+77423953 | Msa0226940:CDS |
| AGAGTTTGTTATTACCGTTA+CGG | 0.566423 | 2_1:-77418410 | None:intergenic |
| CATCATGGTTTATGCTGCAA+CGG | 0.568976 | 2_1:+77423732 | Msa0226940:CDS |
| AAAGGTGAGACGCCACGTGC+CGG | 0.569167 | 2_1:-77418382 | None:intergenic |
| CGTGCCGGTGAGGGATTGGG+AGG | 0.570646 | 2_1:-77418367 | None:intergenic |
| ACCTCCTCCCAATCCCTCAC+CGG | 0.571950 | 2_1:+77418363 | Msa0226940:CDS |
| AGAAGATGAACCGAGTAGGA+AGG | 0.574177 | 2_1:+77423692 | Msa0226940:CDS |
| GAGCGGGAAGCGAAGGAGCG+AGG | 0.574577 | 2_1:-77418204 | None:intergenic |
| GAGACGCCACGTGCCGGTGA+GGG | 0.576175 | 2_1:-77418376 | None:intergenic |
| AAAAGGCGCGGAAGAAGGAG+CGG | 0.577934 | 2_1:-77418221 | None:intergenic |
| AGACGACGCTTTACACATAA+CGG | 0.579654 | 2_1:-77423176 | None:intergenic |
| CAAATAAACAATTAAAACAC+CGG | 0.582905 | 2_1:-77423275 | None:intergenic |
| TTTGACTACTACTATTATTG+GGG | 0.583048 | 2_1:+77423036 | Msa0226940:CDS |
| CTTAATCTTATTGCAACAAG+AGG | 0.584381 | 2_1:-77424108 | None:intergenic |
| AAAGATTGATGCTCCTAGGA+TGG | 0.587388 | 2_1:+77423543 | Msa0226940:CDS |
| TGCAGCGTAGGGGTATTGAG+GGG | 0.592565 | 2_1:-77418154 | None:intergenic |
| GAGGTTGTTCAACATGCTAT+GGG | 0.595730 | 2_1:+77423205 | Msa0226940:CDS |
| GAAGATGAACCGAGTAGGAA+GGG | 0.598449 | 2_1:+77423693 | Msa0226940:CDS |
| GCAATAAGATTAAGTCATCA+GGG | 0.602082 | 2_1:+77424117 | Msa0226940:CDS |
| GGAATAGGACCAACAACAAG+AGG | 0.604623 | 2_1:-77422977 | None:intergenic |
| TGTCGGCAATGTCTATAGCA+TGG | 0.606367 | 2_1:+77424215 | Msa0226940:CDS |
| TTGTTCAACATGCTATGGGT+AGG | 0.614131 | 2_1:+77423209 | Msa0226940:CDS |
| TGAGACGCCACGTGCCGGTG+AGG | 0.618138 | 2_1:-77418377 | None:intergenic |
| TAAGGTTGATGATGATGAGG+AGG | 0.622414 | 2_1:+77422925 | Msa0226940:CDS |
| GTCAAATTAAACACAGCACC+AGG | 0.622692 | 2_1:-77423019 | None:intergenic |
| TTTCTCACTACGCCAAACAG+TGG | 0.625897 | 2_1:+77423909 | Msa0226940:CDS |
| CCGTTGTGGTTGTTGTAGGG+TGG | 0.627322 | 2_1:-77418126 | None:intergenic |
| CCTACTCGGTTCATCTTCTG+CGG | 0.628118 | 2_1:-77423688 | None:intergenic |
| TAAGTTCACAGGTGCAACAA+CGG | 0.628689 | 2_1:+77424059 | Msa0226940:CDS |
| GGACAAGCCAGGTGATGACG+AGG | 0.631412 | 2_1:-77418284 | None:intergenic |
| GTGGTTGTTGTAGGGTGGTG+CGG | 0.631462 | 2_1:-77418121 | None:intergenic |
| TTCCTACTTTCTGATAAAGG+AGG | 0.633147 | 2_1:-77423955 | None:intergenic |
| TTAGTGTCGAATTGTTGGTG+AGG | 0.634170 | 2_1:+77423149 | Msa0226940:CDS |
| AAAGTAGGAAGAGATCGCTA+GGG | 0.636934 | 2_1:+77423968 | Msa0226940:CDS |
| GTCCGGTTACCTATTATTCG+GGG | 0.637678 | 2_1:+77423759 | Msa0226940:CDS |
| CGGTTCGGTTCATCATTTAG+GGG | 0.639831 | 2_1:+77423321 | Msa0226940:CDS |
| CTCACCTTTAACGTCCGTAA+CGG | 0.641687 | 2_1:+77418396 | Msa0226940:CDS |
| AGCGTAGGGGTATTGAGGGG+CGG | 0.644743 | 2_1:-77418151 | None:intergenic |
| CCGCAGAAGATGAACCGAGT+AGG | 0.645116 | 2_1:+77423688 | Msa0226940:CDS |
| ATCTTATCAAGCGAACAAAG+TGG | 0.658267 | 2_1:-77423424 | None:intergenic |
| CCACCCTACAACAACCACAA+CGG | 0.659828 | 2_1:+77418126 | Msa0226940:CDS |
| TATACAACGAGCTTGAAGGT+AGG | 0.669040 | 2_1:+77423662 | Msa0226940:CDS |
| TTGAACTATATCGTTCGAGT+CGG | 0.681194 | 2_1:+77423847 | Msa0226940:CDS |
| AGGATGGGAGAGAAGGACGA+AGG | 0.708118 | 2_1:-77418305 | None:intergenic |
| TAAAGCGTCGTCTTATGGTG+AGG | 0.714455 | 2_1:+77423186 | Msa0226940:CDS |
| ATGACAAAATCCGTTCTACG+CGG | 0.759656 | 2_1:-77424149 | None:intergenic |
| TTACGCCGAAGATTACGGCG+AGG | 0.760874 | 2_1:-77418260 | None:intergenic |
| TACGGCGAGGCAGATCATGG+TGG | 0.769488 | 2_1:-77418247 | None:intergenic |
| GTAGTGAGAAATGAATAACA+GGG | 0.781956 | 2_1:-77423897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr2_1:77421155-77421174 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr2_1:77421156-77421175 | None:intergenic | 10.0% |
| !!! | GATTTTATAATATGTAATTT+TGG | - | chr2_1:77422225-77422244 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr2_1:77421155-77421174 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr2_1:77421156-77421175 | None:intergenic | 10.0% |
| !! | AATTGTTTATTTGATTATAA+TGG | + | chr2_1:77423285-77423304 | Msa0226940:CDS | 10.0% |
| !! | ATTGTTTATTTGATTATAAT+GGG | + | chr2_1:77423286-77423305 | Msa0226940:CDS | 10.0% |
| !!! | ATTACTTAACAAGTTATTTT+TGG | + | chr2_1:77419181-77419200 | Msa0226940:intron | 15.0% |
| !!! | TTACTTAACAAGTTATTTTT+GGG | + | chr2_1:77419182-77419201 | Msa0226940:intron | 15.0% |
| !! | AATACAAACAATAATTTACA+TGG | - | chr2_1:77419282-77419301 | None:intergenic | 15.0% |
| !! | TATTGTGTAAATTCTTAATT+GGG | + | chr2_1:77419298-77419317 | Msa0226940:intron | 15.0% |
| !! | ATGTTTAAATATGATGATAT+AGG | + | chr2_1:77419337-77419356 | Msa0226940:intron | 15.0% |
| !!! | TCTTTAAGAAAGAAAATTTT+TGG | + | chr2_1:77419865-77419884 | Msa0226940:intron | 15.0% |
| !!! | CTTTAAGAAAGAAAATTTTT+GGG | + | chr2_1:77419866-77419885 | Msa0226940:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr2_1:77421154-77421173 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr2_1:77421191-77421210 | Msa0226940:intron | 15.0% |
| !! | TTTACTAAGATAAAATACTA+TGG | - | chr2_1:77421840-77421859 | None:intergenic | 15.0% |
| !!! | TTTTTTCATATGATATTACA+GGG | - | chr2_1:77422102-77422121 | None:intergenic | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr2_1:77422634-77422653 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr2_1:77422635-77422654 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr2_1:77421154-77421173 | None:intergenic | 15.0% |
| !! | TTGTTTATTTGATTATAATG+GGG | + | chr2_1:77423287-77423306 | Msa0226940:CDS | 15.0% |
| !! | AATTGAATTCAATTGCTTAA+GGG | + | chr2_1:77418891-77418910 | Msa0226940:intron | 20.0% |
| !! | TCAATAAGATATAAAAGTCA+AGG | - | chr2_1:77419114-77419133 | None:intergenic | 20.0% |
| !! | GTATTGTGTAAATTCTTAAT+TGG | + | chr2_1:77419297-77419316 | Msa0226940:intron | 20.0% |
| !! | ATTGTGTAAATTCTTAATTG+GGG | + | chr2_1:77419299-77419318 | Msa0226940:intron | 20.0% |
| !!! | TATAGGCTATTTTATTTGAA+TGG | + | chr2_1:77419354-77419373 | Msa0226940:intron | 20.0% |
| !! | TTACTAAAATATGTAAAGCT+TGG | - | chr2_1:77419563-77419582 | None:intergenic | 20.0% |
| !!! | TGAAAAATGCATTTTATGTT+TGG | + | chr2_1:77419772-77419791 | Msa0226940:intron | 20.0% |
| !!! | ATTTTCTTTCTTAAAGATGA+TGG | - | chr2_1:77419862-77419881 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTCTTAAGATGA+TGG | - | chr2_1:77419942-77419961 | None:intergenic | 20.0% |
| !! | GGATAAGATTGATAAAATTA+TGG | + | chr2_1:77420119-77420138 | Msa0226940:intron | 20.0% |
| !! | TTCCTTAAAATAAAATACCA+TGG | - | chr2_1:77420362-77420381 | None:intergenic | 20.0% |
| !!! | TTTTATTTTAAGGAAATGCT+TGG | + | chr2_1:77420367-77420386 | Msa0226940:intron | 20.0% |
| !!! | TTTATTTTAAGGAAATGCTT+GGG | + | chr2_1:77420368-77420387 | Msa0226940:intron | 20.0% |
| !!! | ATTTTTTTTCAAAGGCAAAA+AGG | - | chr2_1:77420474-77420493 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr2_1:77421021-77421040 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_1:77421131-77421150 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr2_1:77421190-77421209 | Msa0226940:intron | 20.0% |
| !!! | TCTTTTAACTTCAATGAATT+AGG | + | chr2_1:77421248-77421267 | Msa0226940:intron | 20.0% |
| !! | TTACCTAATATGATAATTCA+TGG | + | chr2_1:77421384-77421403 | Msa0226940:intron | 20.0% |
| !! | TTGTAATCTTACCTATAAAA+TGG | + | chr2_1:77421535-77421554 | Msa0226940:intron | 20.0% |
| !! | TGTAATCTTACCTATAAAAT+GGG | + | chr2_1:77421536-77421555 | Msa0226940:intron | 20.0% |
| !! | CTCTAATAAAAAAGTCATTT+AGG | + | chr2_1:77421749-77421768 | Msa0226940:intron | 20.0% |
| !! | AATAAAAAAGTCATTTAGGA+TGG | + | chr2_1:77421753-77421772 | Msa0226940:intron | 20.0% |
| !! | TAATAGAATCTCTATGATAA+GGG | - | chr2_1:77421882-77421901 | None:intergenic | 20.0% |
| !! | ATAATAGAATCTCTATGATA+AGG | - | chr2_1:77421883-77421902 | None:intergenic | 20.0% |
| !! | TATGAGTATTAGTTGATTAA+TGG | - | chr2_1:77422002-77422021 | None:intergenic | 20.0% |
| !!! | AAAAGATTTTCTAGAAAACT+GGG | - | chr2_1:77422047-77422066 | None:intergenic | 20.0% |
| !!! | TAAAAGATTTTCTAGAAAAC+TGG | - | chr2_1:77422048-77422067 | None:intergenic | 20.0% |
| !!! | TTTTTCATATGATATTACAG+GGG | - | chr2_1:77422101-77422120 | None:intergenic | 20.0% |
| !!! | GTTTTTTCATATGATATTAC+AGG | - | chr2_1:77422103-77422122 | None:intergenic | 20.0% |
| !!! | TACATTTTAGAAAAGTTGAA+GGG | - | chr2_1:77422247-77422266 | None:intergenic | 20.0% |
| !!! | TATTGATTTGTAATCATTGT+TGG | - | chr2_1:77422312-77422331 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGTAAAT+GGG | - | chr2_1:77422565-77422584 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | - | chr2_1:77422675-77422694 | None:intergenic | 20.0% |
| !! | AATTTGACTACTACTATTAT+TGG | + | chr2_1:77423034-77423053 | Msa0226940:CDS | 20.0% |
| !! | ATTTGACTACTACTATTATT+GGG | + | chr2_1:77423035-77423054 | Msa0226940:CDS | 20.0% |
| !!! | ATTGTCTTGATTATTTTGAT+GGG | + | chr2_1:77423112-77423131 | Msa0226940:CDS | 20.0% |
| !! | CAAATAAACAATTAAAACAC+CGG | - | chr2_1:77423278-77423297 | None:intergenic | 20.0% |
| !! | TGTTTATTTGATTATAATGG+GGG | + | chr2_1:77423288-77423307 | Msa0226940:CDS | 20.0% |
| !!! | TGTTTTGACTAATTTTGATA+AGG | + | chr2_1:77423798-77423817 | Msa0226940:CDS | 20.0% |
| ! | AATGATAGAAGATTGAAGAA+CGG | - | chr2_1:77418455-77418474 | None:intergenic | 25.0% |
| ! | NNNNNNNNNNCGTTTCGTTC+TGG | + | chr2_1:77418745-77418764 | Msa0226940:intron | 25.0% |
| ! | GAATTGAATTCAATTGCTTA+AGG | + | chr2_1:77418890-77418909 | Msa0226940:intron | 25.0% |
| !!! | GGTTTAGCTTAATTTGTTTT+AGG | + | chr2_1:77418912-77418931 | Msa0226940:intron | 25.0% |
| !!! | TTGGTGATTAATGTTTTTAG+TGG | + | chr2_1:77418984-77419003 | Msa0226940:intron | 25.0% |
| !!! | TTTTTAGTGGTTTATGACTA+TGG | + | chr2_1:77418997-77419016 | Msa0226940:intron | 25.0% |
| !! | TTTTAGTGGTTTATGACTAT+GGG | + | chr2_1:77418998-77419017 | Msa0226940:intron | 25.0% |
| !! | TCATTTTCTCAAACCATTAT+CGG | - | chr2_1:77419425-77419444 | None:intergenic | 25.0% |
| ! | TTGAATTGAAAGAATGAACT+TGG | + | chr2_1:77419620-77419639 | Msa0226940:intron | 25.0% |
| ! | AGTTCTATAATCTAACAGAT+AGG | - | chr2_1:77419662-77419681 | None:intergenic | 25.0% |
| ! | TATCTGTTAGATTATAGAAC+TGG | + | chr2_1:77419661-77419680 | Msa0226940:intron | 25.0% |
| ! | AATGTAGCAGAAAAAGAAAA+AGG | - | chr2_1:77419839-77419858 | None:intergenic | 25.0% |
| ! | GTACAAATCCAAATAGTAAA+AGG | - | chr2_1:77419897-77419916 | None:intergenic | 25.0% |
| !!! | ACGGATTTTTTTTCTTACAA+TGG | - | chr2_1:77420219-77420238 | None:intergenic | 25.0% |
| ! | ACCTTAGAAAAGAATATAGT+GGG | + | chr2_1:77420257-77420276 | Msa0226940:intron | 25.0% |
| !! | AGTTTTTCTGATTATCCAAT+AGG | + | chr2_1:77420287-77420306 | Msa0226940:intron | 25.0% |
| !!! | TGCCATGGTATTTTATTTTA+AGG | + | chr2_1:77420357-77420376 | Msa0226940:intron | 25.0% |
| !!! | TTATTTTAAGGAAATGCTTG+GGG | + | chr2_1:77420369-77420388 | Msa0226940:intron | 25.0% |
| ! | GATTTACAAAATGGTTCATA+TGG | + | chr2_1:77420392-77420411 | Msa0226940:intron | 25.0% |
| !!! | TCTTGGCTATTTTTTTTCAA+AGG | - | chr2_1:77420482-77420501 | None:intergenic | 25.0% |
| ! | AAAAAAATAGCCAAGAACTT+TGG | + | chr2_1:77420486-77420505 | Msa0226940:intron | 25.0% |
| !!! | TGAACTTTTGAAATGTACTT+TGG | + | chr2_1:77420588-77420607 | Msa0226940:intron | 25.0% |
| !! | TTTTTATCATGACATACATG+TGG | + | chr2_1:77420751-77420770 | Msa0226940:intron | 25.0% |
| !! | TGCATTACTGCATTTTATAA+AGG | + | chr2_1:77420941-77420960 | Msa0226940:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2_1:77421022-77421041 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr2_1:77421043-77421062 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr2_1:77421044-77421063 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_1:77421132-77421151 | None:intergenic | 25.0% |
| ! | GTTGAGATATATTAACATTG+AGG | + | chr2_1:77421275-77421294 | Msa0226940:intron | 25.0% |
| ! | TTAGGTAATATGTCTCATAA+GGG | - | chr2_1:77421372-77421391 | None:intergenic | 25.0% |
| ! | ATTAGGTAATATGTCTCATA+AGG | - | chr2_1:77421373-77421392 | None:intergenic | 25.0% |
| ! | TCTCCATGAATTATCATATT+AGG | - | chr2_1:77421390-77421409 | None:intergenic | 25.0% |
| ! | TATAAAAGTCGAAAACGAAT+TGG | - | chr2_1:77421494-77421513 | None:intergenic | 25.0% |
| !! | TCGTTTTCGACTTTTATAAA+TGG | + | chr2_1:77421496-77421515 | Msa0226940:intron | 25.0% |
| !! | TGTAGTTCTGTATAAATAGT+AGG | + | chr2_1:77421617-77421636 | Msa0226940:intron | 25.0% |
| ! | TGTTTAACAAACTACTCTAT+TGG | + | chr2_1:77421721-77421740 | Msa0226940:intron | 25.0% |
| ! | TGATTAATGGAAGAGTTTAA+TGG | - | chr2_1:77421989-77422008 | None:intergenic | 25.0% |
| !!! | CTACATTTTAGAAAAGTTGA+AGG | - | chr2_1:77422248-77422267 | None:intergenic | 25.0% |
| !!! | CTTCAACTTTTCTAAAATGT+AGG | + | chr2_1:77422246-77422265 | Msa0226940:intron | 25.0% |
| !!! | ATCTGCTAACTTTTTTGATT+TGG | - | chr2_1:77422375-77422394 | None:intergenic | 25.0% |
| !!! | ATTTGCTTTTAATTCTGAGA+TGG | - | chr2_1:77422469-77422488 | None:intergenic | 25.0% |
| !! | ATTAAAAGCAAATTTTGCCA+AGG | + | chr2_1:77422476-77422495 | Msa0226940:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGTAAA+TGG | - | chr2_1:77422566-77422585 | None:intergenic | 25.0% |
| !! | TGAAATGGCTCAATTATTTT+GGG | - | chr2_1:77422587-77422606 | None:intergenic | 25.0% |
| !! | TTGAAATGGCTCAATTATTT+TGG | - | chr2_1:77422588-77422607 | None:intergenic | 25.0% |
| ! | AGCTGTATTGAAAATTGAAA+TGG | - | chr2_1:77422602-77422621 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | - | chr2_1:77422676-77422695 | None:intergenic | 25.0% |
| !! | TCAAAGATTATCTTTTGATG+AGG | + | chr2_1:77422883-77422902 | Msa0226940:CDS | 25.0% |
| !! | CAAAGATTATCTTTTGATGA+GGG | + | chr2_1:77422884-77422903 | Msa0226940:CDS | 25.0% |
| ! | TTTGACTACTACTATTATTG+GGG | + | chr2_1:77423036-77423055 | Msa0226940:CDS | 25.0% |
| !!! | GATTGTCTTGATTATTTTGA+TGG | + | chr2_1:77423111-77423130 | Msa0226940:CDS | 25.0% |
| !!! | TTGTCTTGATTATTTTGATG+GGG | + | chr2_1:77423113-77423132 | Msa0226940:CDS | 25.0% |
| !!! | TGTATTATTTTGAACAATGC+CGG | + | chr2_1:77423256-77423275 | Msa0226940:CDS | 25.0% |
| !!! | ACTAATTTTGATAAGGATCT+TGG | + | chr2_1:77423805-77423824 | Msa0226940:CDS | 25.0% |
| !! | AGAGTTTGTTATTACCGTTA+CGG | - | chr2_1:77418413-77418432 | None:intergenic | 30.0% |
| !!! | GATTTGGTGTCCATTTTAAA+CGG | - | chr2_1:77418507-77418526 | None:intergenic | 30.0% |
| ATTAAGATTCGCTTCAGATT+TGG | - | chr2_1:77418523-77418542 | None:intergenic | 30.0% | |
| CTTAATGGTGATAGATCAAA+AGG | + | chr2_1:77418594-77418613 | Msa0226940:CDS | 30.0% | |
| ! | CTAGGTTTGAAAAATGGATT+TGG | + | chr2_1:77418965-77418984 | Msa0226940:intron | 30.0% |
| ! | TTGATCATTGACTGAAGAAT+TGG | + | chr2_1:77419130-77419149 | Msa0226940:intron | 30.0% |
| TATTCTGCTGCTAATTGTAA+TGG | + | chr2_1:77419155-77419174 | Msa0226940:intron | 30.0% | |
| TACCACTCTTGTGAAAATAA+TGG | + | chr2_1:77419254-77419273 | Msa0226940:intron | 30.0% | |
| ! | AACCATTATTTTCACAAGAG+TGG | - | chr2_1:77419259-77419278 | None:intergenic | 30.0% |
| AGAATGAACTTGGTAAAGAA+TGG | + | chr2_1:77419630-77419649 | Msa0226940:intron | 30.0% | |
| GCTAAAACCAAAACTAGAAA+TGG | - | chr2_1:77419711-77419730 | None:intergenic | 30.0% | |
| AATACTATCAACCTTCTTCT+TGG | - | chr2_1:77419751-77419770 | None:intergenic | 30.0% | |
| AGTGTAGCAGAAAAAGAAAA+AGG | - | chr2_1:77419919-77419938 | None:intergenic | 30.0% | |
| AAAACAAAAGGCCTTAATGT+AGG | - | chr2_1:77420048-77420067 | None:intergenic | 30.0% | |
| GAAATGGACACTAAAACAAA+AGG | - | chr2_1:77420060-77420079 | None:intergenic | 30.0% | |
| TTAGTGTCCATTTCTAATTC+TGG | + | chr2_1:77420066-77420085 | Msa0226940:intron | 30.0% | |
| GCTAAAACCAGAATTAGAAA+TGG | - | chr2_1:77420076-77420095 | None:intergenic | 30.0% | |
| !!! | TTCCTTCACATTTTTTTGCA+AGG | + | chr2_1:77420098-77420117 | Msa0226940:intron | 30.0% |
| ATCCTTGCAAAAAAATGTGA+AGG | - | chr2_1:77420103-77420122 | None:intergenic | 30.0% | |
| !!! | TTTTCTAAGGTGTAAGCAAA+AGG | - | chr2_1:77420248-77420267 | None:intergenic | 30.0% |
| CACCTTAGAAAAGAATATAG+TGG | + | chr2_1:77420256-77420275 | Msa0226940:intron | 30.0% | |
| ! | ACCCACTATATTCTTTTCTA+AGG | - | chr2_1:77420261-77420280 | None:intergenic | 30.0% |
| !! | TATTTTAAGGAAATGCTTGG+GGG | + | chr2_1:77420370-77420389 | Msa0226940:intron | 30.0% |
| TAAGAACAAGACATCCTATT+TGG | - | chr2_1:77420431-77420450 | None:intergenic | 30.0% | |
| !!! | TTTTGAAATGTACTTTGGCA+AGG | + | chr2_1:77420593-77420612 | Msa0226940:intron | 30.0% |
| ! | TTTGAAATGTACTTTGGCAA+GGG | + | chr2_1:77420594-77420613 | Msa0226940:intron | 30.0% |
| TTGTTGTCAAGGTACAATAA+TGG | - | chr2_1:77420885-77420904 | None:intergenic | 30.0% | |
| TTATTGTACCTTGACAACAA+TGG | + | chr2_1:77420885-77420904 | Msa0226940:intron | 30.0% | |
| TATTGTACCTTGACAACAAT+GGG | + | chr2_1:77420886-77420905 | Msa0226940:intron | 30.0% | |
| ! | TTCAGGATGAGTTTAAGTTT+GGG | + | chr2_1:77420913-77420932 | Msa0226940:intron | 30.0% |
| !! | ACTGCATTTTATAAAGGCAT+TGG | + | chr2_1:77420947-77420966 | Msa0226940:intron | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_1:77421147-77421166 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr2_1:77421195-77421214 | Msa0226940:intron | 30.0% | |
| AGATATATTAACATTGAGGC+AGG | + | chr2_1:77421279-77421298 | Msa0226940:intron | 30.0% | |
| AGAAAAACAAGACAAGTTCA+AGG | - | chr2_1:77421326-77421345 | None:intergenic | 30.0% | |
| ATTAATATGCATCCCTCTAT+AGG | + | chr2_1:77421440-77421459 | Msa0226940:intron | 30.0% | |
| CATAATCTCTATCCCATAAA+AGG | - | chr2_1:77421674-77421693 | None:intergenic | 30.0% | |
| TTAACAAACTACTCTATTGG+AGG | + | chr2_1:77421724-77421743 | Msa0226940:intron | 30.0% | |
| TAACAAACTACTCTATTGGA+GGG | + | chr2_1:77421725-77421744 | Msa0226940:intron | 30.0% | |
| TTCATCAAATGTGGAAACAA+TGG | - | chr2_1:77422344-77422363 | None:intergenic | 30.0% | |
| ! | GCAAATGTTTTCATCAAATG+TGG | - | chr2_1:77422353-77422372 | None:intergenic | 30.0% |
| TAACCTATATGCTCATAATG+AGG | - | chr2_1:77422430-77422449 | None:intergenic | 30.0% | |
| AGTAAATGGGTCAGATATTT+CGG | - | chr2_1:77422552-77422571 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_1:77421147-77421166 | None:intergenic | 30.0% | |
| !! | GATTTTGATGAATCATTCTG+TGG | - | chr2_1:77422860-77422879 | None:intergenic | 30.0% |
| ! | GATAATTATCCTCTTGTTGT+TGG | + | chr2_1:77422968-77422987 | Msa0226940:CDS | 30.0% |
| !!! | TATTTTGATGGGGATTTTGT+CGG | + | chr2_1:77423123-77423142 | Msa0226940:CDS | 30.0% |
| !!! | GCTTTTATTAAGCTTGTTGA+AGG | + | chr2_1:77423520-77423539 | Msa0226940:CDS | 30.0% |
| ACATATGCATTTGTCATGAT+TGG | - | chr2_1:77423619-77423638 | None:intergenic | 30.0% | |
| GTAGTGAGAAATGAATAACA+GGG | - | chr2_1:77423900-77423919 | None:intergenic | 30.0% | |
| !! | CTGTTGGTTCTCATATATAT+CGG | + | chr2_1:77424003-77424022 | Msa0226940:CDS | 30.0% |
| CTTAATCTTATTGCAACAAG+AGG | - | chr2_1:77424111-77424130 | None:intergenic | 30.0% | |
| TGCAATAAGATTAAGTCATC+AGG | + | chr2_1:77424116-77424135 | Msa0226940:CDS | 30.0% | |
| GCAATAAGATTAAGTCATCA+GGG | + | chr2_1:77424117-77424136 | Msa0226940:CDS | 30.0% | |
| ! | GATTTTGTCATGGTTAATGT+TGG | + | chr2_1:77424161-77424180 | Msa0226940:CDS | 30.0% |
| ! | CATTTTAAACGGAGCAAGAT+TGG | - | chr2_1:77418496-77418515 | None:intergenic | 35.0% |
| CAATCTTGCTCCGTTTAAAA+TGG | + | chr2_1:77418494-77418513 | Msa0226940:CDS | 35.0% | |
| TTGTGCAGGAAAATTGATGT+TGG | + | chr2_1:77418802-77418821 | Msa0226940:CDS | 35.0% | |
| TGTGCAGGAAAATTGATGTT+GGG | + | chr2_1:77418803-77418822 | Msa0226940:CDS | 35.0% | |
| CTAGCTAGGGTTTCAAAAAA+GGG | - | chr2_1:77418949-77418968 | None:intergenic | 35.0% | |
| !! | CCATTTTTCAAACCTAGCTA+GGG | - | chr2_1:77418962-77418981 | None:intergenic | 35.0% |
| !! | TCCATTTTTCAAACCTAGCT+AGG | - | chr2_1:77418963-77418982 | None:intergenic | 35.0% |
| AGTCCTATGAAACACAAACA+CGG | + | chr2_1:77419388-77419407 | Msa0226940:intron | 35.0% | |
| TGTAATCATCTGTGTCATGA+CGG | + | chr2_1:77419455-77419474 | Msa0226940:intron | 35.0% | |
| AAAACTAGAAATGGACACCA+AGG | - | chr2_1:77419702-77419721 | None:intergenic | 35.0% | |
| !!! | TTGGTGTCCATTTCTAGTTT+TGG | + | chr2_1:77419701-77419720 | Msa0226940:intron | 35.0% |
| TGACATTCTTTCCAAGAAGA+AGG | + | chr2_1:77419737-77419756 | Msa0226940:intron | 35.0% | |
| ! | GGGTTTCACCTTTTACTATT+TGG | + | chr2_1:77419886-77419905 | Msa0226940:intron | 35.0% |
| ACCTCAGAGAAGAACATATA+CGG | + | chr2_1:77419985-77420004 | Msa0226940:intron | 35.0% | |
| TTTCCGAGTATCCTACATTA+AGG | + | chr2_1:77420034-77420053 | Msa0226940:intron | 35.0% | |
| TGTAAGCAAAAGGTTGAACA+CGG | - | chr2_1:77420238-77420257 | None:intergenic | 35.0% | |
| TTTCTGATTATCCAATAGGC+AGG | + | chr2_1:77420291-77420310 | Msa0226940:intron | 35.0% | |
| AATAAGTACTCGATCAACGA+AGG | - | chr2_1:77420317-77420336 | None:intergenic | 35.0% | |
| GTTGTAACTCCTTACCAAAT+AGG | + | chr2_1:77420414-77420433 | Msa0226940:intron | 35.0% | |
| ACAAGACATCCTATTTGGTA+AGG | - | chr2_1:77420426-77420445 | None:intergenic | 35.0% | |
| ! | TTGTTTAGAGCCAAAGTTCT+TGG | - | chr2_1:77420499-77420518 | None:intergenic | 35.0% |
| TTGAAATGTACTTTGGCAAG+GGG | + | chr2_1:77420595-77420614 | Msa0226940:intron | 35.0% | |
| TTATCATGACATACATGTGG+TGG | + | chr2_1:77420754-77420773 | Msa0226940:intron | 35.0% | |
| ! | GTACTTTGAGCTCTAATTTG+TGG | + | chr2_1:77420786-77420805 | Msa0226940:intron | 35.0% |
| ! | GTTCAGGATGAGTTTAAGTT+TGG | + | chr2_1:77420912-77420931 | Msa0226940:intron | 35.0% |
| ! | TCAGGATGAGTTTAAGTTTG+GGG | + | chr2_1:77420914-77420933 | Msa0226940:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr2_1:77421008-77421027 | None:intergenic | 35.0% | |
| TTAACATTGAGGCAGGTATT+AGG | + | chr2_1:77421286-77421305 | Msa0226940:intron | 35.0% | |
| ! | TCGTATTGAGCCCATTTTAT+AGG | - | chr2_1:77421549-77421568 | None:intergenic | 35.0% |
| ACTACAATACAGACTCCTTA+AGG | - | chr2_1:77421603-77421622 | None:intergenic | 35.0% | |
| ATCCCATAAAAGGAGATCAA+CGG | - | chr2_1:77421664-77421683 | None:intergenic | 35.0% | |
| AACAAACTACTCTATTGGAG+GGG | + | chr2_1:77421726-77421745 | Msa0226940:intron | 35.0% | |
| AACAGAACCTATAGACCTTA+AGG | + | chr2_1:77422120-77422139 | Msa0226940:intron | 35.0% | |
| ! | CCATTATACAAGGTACCTTA+AGG | - | chr2_1:77422138-77422157 | None:intergenic | 35.0% |
| ! | CCTTAAGGTACCTTGTATAA+TGG | + | chr2_1:77422135-77422154 | Msa0226940:intron | 35.0% |
| !!! | TGGTTTTGGTCCATTATACA+AGG | - | chr2_1:77422148-77422167 | None:intergenic | 35.0% |
| ! | AAACTTGGGTAATGTGGTTT+TGG | - | chr2_1:77422162-77422181 | None:intergenic | 35.0% |
| !! | CATTGTTGGTGTCAAATGTT+AGG | - | chr2_1:77422298-77422317 | None:intergenic | 35.0% |
| GATCCTCATTATGAGCATAT+AGG | + | chr2_1:77422424-77422443 | Msa0226940:intron | 35.0% | |
| !! | TTCTGAGATGGATATGATGA+AGG | - | chr2_1:77422457-77422476 | None:intergenic | 35.0% |
| ! | TTACGAAATGGATTTGTCCT+TGG | - | chr2_1:77422496-77422515 | None:intergenic | 35.0% |
| GTAAATGGGTCAGATATTTC+GGG | - | chr2_1:77422551-77422570 | None:intergenic | 35.0% | |
| ! | AGATTATCTTTTGATGAGGG+TGG | + | chr2_1:77422887-77422906 | Msa0226940:CDS | 35.0% |
| !! | ATCTAAGGTTGATGATGATG+AGG | + | chr2_1:77422922-77422941 | Msa0226940:CDS | 35.0% |
| TATTATTGGGGCAGGAATTA+TGG | + | chr2_1:77423048-77423067 | Msa0226940:CDS | 35.0% | |
| ! | GGAAATTAGTGTCGAATTGT+TGG | + | chr2_1:77423144-77423163 | Msa0226940:CDS | 35.0% |
| ATCTCAGATAAAATCCTAGC+AGG | - | chr2_1:77423235-77423254 | None:intergenic | 35.0% | |
| !! | GCTTGTGATTCTTGTTGTTA+TGG | + | chr2_1:77423387-77423406 | Msa0226940:CDS | 35.0% |
| !! | TGTGATTCTTGTTGTTATGG+TGG | + | chr2_1:77423390-77423409 | Msa0226940:CDS | 35.0% |
| ATCTTATCAAGCGAACAAAG+TGG | - | chr2_1:77423427-77423446 | None:intergenic | 35.0% | |
| !!! | TCCTGATTTTAGCTCGAAAA+AGG | + | chr2_1:77423567-77423586 | Msa0226940:CDS | 35.0% |
| ! | CACTACAATTTTGTGCATCA+TGG | + | chr2_1:77423717-77423736 | Msa0226940:CDS | 35.0% |
| TTGATAAGGATCTTGGAATC+CGG | + | chr2_1:77423812-77423831 | Msa0226940:CDS | 35.0% | |
| TTGAACTATATCGTTCGAGT+CGG | + | chr2_1:77423847-77423866 | Msa0226940:CDS | 35.0% | |
| CAGGGAAAACAAGTATCAAA+TGG | - | chr2_1:77423882-77423901 | None:intergenic | 35.0% | |
| CGTAGTGAGAAATGAATAAC+AGG | - | chr2_1:77423901-77423920 | None:intergenic | 35.0% | |
| ! | ATACCAAAGTATCCACTGTT+TGG | - | chr2_1:77423924-77423943 | None:intergenic | 35.0% |
| AGTGGATACTTTGGTATTTG+AGG | + | chr2_1:77423927-77423946 | Msa0226940:CDS | 35.0% | |
| GTGGATACTTTGGTATTTGA+GGG | + | chr2_1:77423928-77423947 | Msa0226940:CDS | 35.0% | |
| TTCCTACTTTCTGATAAAGG+AGG | - | chr2_1:77423958-77423977 | None:intergenic | 35.0% | |
| CTCTTCCTACTTTCTGATAA+AGG | - | chr2_1:77423961-77423980 | None:intergenic | 35.0% | |
| TTAAAAGCTGTCCAGATGTT+TGG | - | chr2_1:77424042-77424061 | None:intergenic | 35.0% | |
| AATCTTATTGCAACAAGAGG+TGG | - | chr2_1:77424108-77424127 | None:intergenic | 35.0% | |
| GTCATGGTTAATGTTGGTAT+TGG | + | chr2_1:77424167-77424186 | Msa0226940:CDS | 35.0% | |
| ATTACCGTTACGGACGTTAA+AGG | - | chr2_1:77418403-77418422 | None:intergenic | 40.0% | |
| !! | ACGGAGAGCGTTATAGTTAA+CGG | - | chr2_1:77418436-77418455 | None:intergenic | 40.0% |
| TCCGTTTGATGTACAGATTG+TGG | + | chr2_1:77418623-77418642 | Msa0226940:intron | 40.0% | |
| GCCACAATCTGTACATCAAA+CGG | - | chr2_1:77418627-77418646 | None:intergenic | 40.0% | |
| GTTTGATGTACAGATTGTGG+CGG | + | chr2_1:77418626-77418645 | Msa0226940:intron | 40.0% | |
| !! | NNNCGTTTCGTTCTGGTTCT+TGG | + | chr2_1:77418752-77418771 | Msa0226940:intron | 40.0% |
| !! | GTTTAGGACGAGGATTTTGA+AGG | + | chr2_1:77418777-77418796 | Msa0226940:intron | 40.0% |
| !! | GGATTTTGAAGGTTTTGTGC+AGG | + | chr2_1:77418788-77418807 | Msa0226940:CDS | 40.0% |
| ATTTCGTCGAATTCGACTTC+TGG | + | chr2_1:77418826-77418845 | Msa0226940:CDS | 40.0% | |
| TCGACTTCTGGTGAATTGAT+TGG | + | chr2_1:77418838-77418857 | Msa0226940:CDS | 40.0% | |
| ACTTCTGGTGAATTGATTGG+TGG | + | chr2_1:77418841-77418860 | Msa0226940:CDS | 40.0% | |
| TGGTGGAAATAGAGAATGTC+AGG | + | chr2_1:77418858-77418877 | Msa0226940:CDS | 40.0% | |
| GAAATAGAGAATGTCAGGTG+TGG | + | chr2_1:77418863-77418882 | Msa0226940:intron | 40.0% | |
| CCTAGCTAGGGTTTCAAAAA+AGG | - | chr2_1:77418950-77418969 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTGAAACCCTAGCT+AGG | + | chr2_1:77418947-77418966 | Msa0226940:intron | 40.0% |
| CCCTAGCTAGGTTTGAAAAA+TGG | + | chr2_1:77418959-77418978 | Msa0226940:intron | 40.0% | |
| TGTCCGTGTTTGTGTTTCAT+AGG | - | chr2_1:77419394-77419413 | None:intergenic | 40.0% | |
| ACACGATACGTATCTAACAC+CGG | + | chr2_1:77419484-77419503 | Msa0226940:intron | 40.0% | |
| !! | GTAAAGCTTGGTGTGAAAAG+AGG | - | chr2_1:77419551-77419570 | None:intergenic | 40.0% |
| GGCAGATCATAAATGAACCT+TGG | + | chr2_1:77419682-77419701 | Msa0226940:intron | 40.0% | |
| TCCGTATATGTTCTTCTCTG+AGG | - | chr2_1:77419989-77420008 | None:intergenic | 40.0% | |
| AGGCCTTAATGTAGGATACT+CGG | - | chr2_1:77420040-77420059 | None:intergenic | 40.0% | |
| !!! | ACTTCGAGTTTTGATTGCCA+TGG | + | chr2_1:77420342-77420361 | Msa0226940:intron | 40.0% |
| TGCTTGGGGGATTTACAAAA+TGG | + | chr2_1:77420383-77420402 | Msa0226940:intron | 40.0% | |
| AGCGTTAACCATTCAGTTAC+AGG | + | chr2_1:77420548-77420567 | Msa0226940:intron | 40.0% | |
| ! | AAAGCTAGCCTGTAACTGAA+TGG | - | chr2_1:77420559-77420578 | None:intergenic | 40.0% |
| AGACTCATTTGACACCACAT+GGG | - | chr2_1:77420689-77420708 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr2_1:77421007-77421026 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr2_1:77421198-77421217 | Msa0226940:intron | 40.0% | |
| AGGCAGGTATTAGGTGAATA+TGG | + | chr2_1:77421295-77421314 | Msa0226940:intron | 40.0% | |
| ! | AAGCCGTTGATCTCCTTTTA+TGG | + | chr2_1:77421658-77421677 | Msa0226940:intron | 40.0% |
| ! | AGCCGTTGATCTCCTTTTAT+GGG | + | chr2_1:77421659-77421678 | Msa0226940:intron | 40.0% |
| TACTCATACACAGATTCTGC+TGG | + | chr2_1:77422014-77422033 | Msa0226940:intron | 40.0% | |
| GGGTTATGAGCAAAATGATC+AGG | - | chr2_1:77422081-77422100 | None:intergenic | 40.0% | |
| ! | CAAGGTACCTTAAGGTCTAT+AGG | - | chr2_1:77422130-77422149 | None:intergenic | 40.0% |
| ACCACATTACCCAAGTTTGT+CGG | + | chr2_1:77422164-77422183 | Msa0226940:intron | 40.0% | |
| TCCATTTCGTAAGACAGACT+AGG | + | chr2_1:77422504-77422523 | Msa0226940:intron | 40.0% | |
| TCCTAGTCTGTCTTACGAAA+TGG | - | chr2_1:77422508-77422527 | None:intergenic | 40.0% | |
| ! | TTATCTTTTGATGAGGGTGG+TGG | + | chr2_1:77422890-77422909 | Msa0226940:CDS | 40.0% |
| ! | TATCTTTTGATGAGGGTGGT+GGG | + | chr2_1:77422891-77422910 | Msa0226940:CDS | 40.0% |
| !!! | TGGTGGGTTTTTAGGATCTA+AGG | + | chr2_1:77422907-77422926 | Msa0226940:CDS | 40.0% |
| !! | TAAGGTTGATGATGATGAGG+AGG | + | chr2_1:77422925-77422944 | Msa0226940:CDS | 40.0% |
| GTTGGTCCTATTCCAAATCA+CGG | + | chr2_1:77422986-77423005 | Msa0226940:CDS | 40.0% | |
| TTGGTCCTATTCCAAATCAC+GGG | + | chr2_1:77422987-77423006 | Msa0226940:CDS | 40.0% | |
| GTCAAATTAAACACAGCACC+AGG | - | chr2_1:77423022-77423041 | None:intergenic | 40.0% | |
| ACTACTACTATTATTGGGGC+AGG | + | chr2_1:77423040-77423059 | Msa0226940:CDS | 40.0% | |
| ! | TTAGTGTCGAATTGTTGGTG+AGG | + | chr2_1:77423149-77423168 | Msa0226940:CDS | 40.0% |
| AGACGACGCTTTACACATAA+CGG | - | chr2_1:77423179-77423198 | None:intergenic | 40.0% | |
| !! | ATGTGTAAAGCGTCGTCTTA+TGG | + | chr2_1:77423181-77423200 | Msa0226940:CDS | 40.0% |
| TGAGGTTGTTCAACATGCTA+TGG | + | chr2_1:77423204-77423223 | Msa0226940:CDS | 40.0% | |
| GAGGTTGTTCAACATGCTAT+GGG | + | chr2_1:77423205-77423224 | Msa0226940:CDS | 40.0% | |
| TTGTTCAACATGCTATGGGT+AGG | + | chr2_1:77423209-77423228 | Msa0226940:CDS | 40.0% | |
| ! | ATAATGGGGGATGTTATGTC+CGG | + | chr2_1:77423301-77423320 | Msa0226940:CDS | 40.0% |
| ! | AGGGGTTTTTGATCAGTTGA+TGG | + | chr2_1:77423339-77423358 | Msa0226940:CDS | 40.0% |
| ! | GGGGTTTTTGATCAGTTGAT+GGG | + | chr2_1:77423340-77423359 | Msa0226940:CDS | 40.0% |
| !! | GGGTTTTTGATCAGTTGATG+GGG | + | chr2_1:77423341-77423360 | Msa0226940:CDS | 40.0% |
| !! | TTTGATCAGTTGATGGGGAA+TGG | + | chr2_1:77423346-77423365 | Msa0226940:CDS | 40.0% |
| !! | TTGATCAGTTGATGGGGAAT+GGG | + | chr2_1:77423347-77423366 | Msa0226940:CDS | 40.0% |
| AAGGAAAGATTGATGCTCCT+AGG | + | chr2_1:77423539-77423558 | Msa0226940:CDS | 40.0% | |
| AAAGATTGATGCTCCTAGGA+TGG | + | chr2_1:77423543-77423562 | Msa0226940:CDS | 40.0% | |
| CTAAAATCAGGAACCATCCT+AGG | - | chr2_1:77423559-77423578 | None:intergenic | 40.0% | |
| !!! | GCCTTTTTCGAGCTAAAATC+AGG | - | chr2_1:77423571-77423590 | None:intergenic | 40.0% |
| TAGCTCGAAAAAGGCTATCT+TGG | + | chr2_1:77423576-77423595 | Msa0226940:CDS | 40.0% | |
| CCTTCAAGCTCGTTGTATAT+CGG | - | chr2_1:77423661-77423680 | None:intergenic | 40.0% | |
| TATACAACGAGCTTGAAGGT+AGG | + | chr2_1:77423662-77423681 | Msa0226940:CDS | 40.0% | |
| CATCATGGTTTATGCTGCAA+CGG | + | chr2_1:77423732-77423751 | Msa0226940:CDS | 40.0% | |
| CTGTCCGGTTACCTATTATT+CGG | + | chr2_1:77423757-77423776 | Msa0226940:CDS | 40.0% | |
| TGTCCGGTTACCTATTATTC+GGG | + | chr2_1:77423758-77423777 | Msa0226940:CDS | 40.0% | |
| ATCCCCGAATAATAGGTAAC+CGG | - | chr2_1:77423764-77423783 | None:intergenic | 40.0% | |
| CAGTATCATCCCCGAATAAT+AGG | - | chr2_1:77423771-77423790 | None:intergenic | 40.0% | |
| TCTTGGAATCCGGTTTAGTT+CGG | + | chr2_1:77423822-77423841 | Msa0226940:CDS | 40.0% | |
| GACTCGAACGATATAGTTCA+AGG | - | chr2_1:77423848-77423867 | None:intergenic | 40.0% | |
| CACCTCCTTTATCAGAAAGT+AGG | + | chr2_1:77423953-77423972 | Msa0226940:CDS | 40.0% | |
| AAAGTAGGAAGAGATCGCTA+GGG | + | chr2_1:77423968-77423987 | Msa0226940:CDS | 40.0% | |
| GTACCATGATTCCAAACATC+TGG | + | chr2_1:77424028-77424047 | Msa0226940:CDS | 40.0% | |
| ! | TGTCCAGATGTTTGGAATCA+TGG | - | chr2_1:77424034-77424053 | None:intergenic | 40.0% |
| !!! | TGGACAGCTTTTAAGTTCAC+AGG | + | chr2_1:77424048-77424067 | Msa0226940:CDS | 40.0% |
| TAAGTTCACAGGTGCAACAA+CGG | + | chr2_1:77424059-77424078 | Msa0226940:CDS | 40.0% | |
| ATGACAAAATCCGTTCTACG+CGG | - | chr2_1:77424152-77424171 | None:intergenic | 40.0% | |
| GTTAGCATTGTAGGAGTTGT+CGG | + | chr2_1:77424198-77424217 | Msa0226940:CDS | 40.0% | |
| GAGGATTACGCCGAAGATTA+CGG | - | chr2_1:77418268-77418287 | None:intergenic | 45.0% | |
| CTCACCTTTAACGTCCGTAA+CGG | + | chr2_1:77418396-77418415 | Msa0226940:CDS | 45.0% | |
| !! | GTTCTGGTTCTTGGAGGTTT+AGG | + | chr2_1:77418761-77418780 | Msa0226940:intron | 45.0% |
| !! | TCAAACCATTATCGGTGTCG+AGG | - | chr2_1:77419417-77419436 | None:intergenic | 45.0% |
| CACGATACGTATCTAACACC+GGG | + | chr2_1:77419485-77419504 | Msa0226940:intron | 45.0% | |
| ACGATACGTATCTAACACCG+GGG | + | chr2_1:77419486-77419505 | Msa0226940:intron | 45.0% | |
| TGGTGTGAAAAGAGGCTATG+AGG | - | chr2_1:77419543-77419562 | None:intergenic | 45.0% | |
| CAGACTCATTTGACACCACA+TGG | - | chr2_1:77420690-77420709 | None:intergenic | 45.0% | |
| ! | TGGTGTCAAATGAGTCTGCT+TGG | + | chr2_1:77420692-77420711 | Msa0226940:intron | 45.0% |
| GGTGTCAAATGAGTCTGCTT+GGG | + | chr2_1:77420693-77420712 | Msa0226940:intron | 45.0% | |
| GAACTGACCCATTGTTGTCA+AGG | - | chr2_1:77420896-77420915 | None:intergenic | 45.0% | |
| TGACAACAATGGGTCAGTTC+AGG | + | chr2_1:77420896-77420915 | Msa0226940:intron | 45.0% | |
| ATGCATCCCTCTATAGGTAG+TGG | + | chr2_1:77421446-77421465 | Msa0226940:intron | 45.0% | |
| TGCATCCCTCTATAGGTAGT+GGG | + | chr2_1:77421447-77421466 | Msa0226940:intron | 45.0% | |
| TCCGACAAACTTGGGTAATG+TGG | - | chr2_1:77422168-77422187 | None:intergenic | 45.0% | |
| TGCACTCATCCGACAAACTT+GGG | - | chr2_1:77422176-77422195 | None:intergenic | 45.0% | |
| TTGCACTCATCCGACAAACT+TGG | - | chr2_1:77422177-77422196 | None:intergenic | 45.0% | |
| ATGGGTCAGATATTTCGGGA+CGG | - | chr2_1:77422547-77422566 | None:intergenic | 45.0% | |
| GGAATAGGACCAACAACAAG+AGG | - | chr2_1:77422980-77422999 | None:intergenic | 45.0% | |
| !! | TAAAGCGTCGTCTTATGGTG+AGG | + | chr2_1:77423186-77423205 | Msa0226940:CDS | 45.0% |
| !! | TCCGGTTCGGTTCATCATTT+AGG | + | chr2_1:77423319-77423338 | Msa0226940:CDS | 45.0% |
| CCCTAAATGATGAACCGAAC+CGG | - | chr2_1:77423323-77423342 | None:intergenic | 45.0% | |
| !! | CCGGTTCGGTTCATCATTTA+GGG | + | chr2_1:77423320-77423339 | Msa0226940:CDS | 45.0% |
| !! | CGGTTCGGTTCATCATTTAG+GGG | + | chr2_1:77423321-77423340 | Msa0226940:CDS | 45.0% |
| !! | TGATCAGTTGATGGGGAATG+GGG | + | chr2_1:77423348-77423367 | Msa0226940:CDS | 45.0% |
| CCGATATACAACGAGCTTGA+AGG | + | chr2_1:77423658-77423677 | Msa0226940:CDS | 45.0% | |
| AGAAGATGAACCGAGTAGGA+AGG | + | chr2_1:77423692-77423711 | Msa0226940:CDS | 45.0% | |
| GAAGATGAACCGAGTAGGAA+GGG | + | chr2_1:77423693-77423712 | Msa0226940:CDS | 45.0% | |
| TTGTAGTGACCCTTCCTACT+CGG | - | chr2_1:77423705-77423724 | None:intergenic | 45.0% | |
| GTCCGGTTACCTATTATTCG+GGG | + | chr2_1:77423759-77423778 | Msa0226940:CDS | 45.0% | |
| AGTTCAAGGCCGAACTAAAC+CGG | - | chr2_1:77423834-77423853 | None:intergenic | 45.0% | |
| TTTCTCACTACGCCAAACAG+TGG | + | chr2_1:77423909-77423928 | Msa0226940:CDS | 45.0% | |
| ACGCCAAACAGTGGATACTT+TGG | + | chr2_1:77423918-77423937 | Msa0226940:CDS | 45.0% | |
| GAAAGTAGGAAGAGATCGCT+AGG | + | chr2_1:77423967-77423986 | Msa0226940:CDS | 45.0% | |
| !! | GCGTAGAACGGATTTTGTCA+TGG | + | chr2_1:77424151-77424170 | Msa0226940:CDS | 45.0% |
| GCTGTGACTGTTAGCATTGT+AGG | + | chr2_1:77424189-77424208 | Msa0226940:CDS | 45.0% | |
| TGTCGGCAATGTCTATAGCA+TGG | + | chr2_1:77424215-77424234 | Msa0226940:CDS | 45.0% | |
| !! | ACAAAAAAAAAAATTAAATT+TGG | + | chr2_1:77419806-77419825 | Msa0226940:intron | 5.0% |
| CCACCCTACAACAACCACAA+CGG | + | chr2_1:77418126-77418145 | Msa0226940:CDS | 50.0% | |
| !! | GGTGGGTTGTAGTATTGAGG+GGG | - | chr2_1:77418180-77418199 | None:intergenic | 50.0% |
| !! | GGGTGGGTTGTAGTATTGAG+GGG | - | chr2_1:77418181-77418200 | None:intergenic | 50.0% |
| !! | GGGGTGGGTTGTAGTATTGA+GGG | - | chr2_1:77418182-77418201 | None:intergenic | 50.0% |
| ! | GCAGATCATGGTGGCGAAAA+AGG | - | chr2_1:77418241-77418260 | None:intergenic | 50.0% |
| ATCTGCCTCGCCGTAATCTT+CGG | + | chr2_1:77418255-77418274 | Msa0226940:CDS | 50.0% | |
| AGAGTGAAGGATGGGAGAGA+AGG | - | chr2_1:77418315-77418334 | None:intergenic | 50.0% | |
| GAGTGGTGAGAGTGAAGGAT+GGG | - | chr2_1:77418323-77418342 | None:intergenic | 50.0% | |
| AGAGTGGTGAGAGTGAAGGA+TGG | - | chr2_1:77418324-77418343 | None:intergenic | 50.0% | |
| ! | CGCTTATCTTGATTCGCGTG+TGG | + | chr2_1:77418563-77418582 | Msa0226940:CDS | 50.0% |
| CGTGTGGTTGACGCTCTTAA+TGG | + | chr2_1:77418579-77418598 | Msa0226940:CDS | 50.0% | |
| !! | CGTTTCGTTCTGGTTCTTGG+AGG | + | chr2_1:77418755-77418774 | Msa0226940:intron | 50.0% |
| ! | GTTCTTGGAGGTTTAGGACG+AGG | + | chr2_1:77418767-77418786 | Msa0226940:intron | 50.0% |
| CATCTGTGTCATGACGGTGT+CGG | + | chr2_1:77419461-77419480 | Msa0226940:intron | 50.0% | |
| GACACTCAACTCCTGGGATT+AGG | - | chr2_1:77419516-77419535 | None:intergenic | 50.0% | |
| GGCATAGACACTCAACTCCT+GGG | - | chr2_1:77419522-77419541 | None:intergenic | 50.0% | |
| AGGCATAGACACTCAACTCC+TGG | - | chr2_1:77419523-77419542 | None:intergenic | 50.0% | |
| ATCAACGAAGGCCTGCCTAT+TGG | - | chr2_1:77420305-77420324 | None:intergenic | 50.0% | |
| GAGTTGTCCTGTTTCACTGC+TGG | + | chr2_1:77420628-77420647 | Msa0226940:intron | 50.0% | |
| TGTCCTGTTTCACTGCTGGA+TGG | + | chr2_1:77420632-77420651 | Msa0226940:intron | 50.0% | |
| CTACCATCCAGCAGTGAAAC+AGG | - | chr2_1:77420638-77420657 | None:intergenic | 50.0% | |
| GTTTCACTGCTGGATGGTAG+TGG | + | chr2_1:77420638-77420657 | Msa0226940:intron | 50.0% | |
| !! | ATGGTAGTGGTACAGCCTAC+AGG | + | chr2_1:77420651-77420670 | Msa0226940:intron | 50.0% |
| GTACAGCCTACAGGCTGATT+CGG | + | chr2_1:77420660-77420679 | Msa0226940:intron | 50.0% | |
| ! | TACAGCCTACAGGCTGATTC+GGG | + | chr2_1:77420661-77420680 | Msa0226940:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr2_1:77421003-77421022 | None:intergenic | 50.0% | |
| GCATCCCTCTATAGGTAGTG+GGG | + | chr2_1:77421448-77421467 | Msa0226940:intron | 50.0% | |
| ! | CATCCCTCTATAGGTAGTGG+GGG | + | chr2_1:77421449-77421468 | Msa0226940:intron | 50.0% |
| CATCCCCCACTACCTATAGA+GGG | - | chr2_1:77421455-77421474 | None:intergenic | 50.0% | |
| ACATCCCCCACTACCTATAG+AGG | - | chr2_1:77421456-77421475 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGGGGATGTGATA+TGG | + | chr2_1:77421460-77421479 | Msa0226940:intron | 50.0% |
| GATGCTGCGCAAAAGCCTTA+AGG | + | chr2_1:77421585-77421604 | Msa0226940:intron | 50.0% | |
| GTCAGATATTTCGGGACGGA+GGG | - | chr2_1:77422543-77422562 | None:intergenic | 50.0% | |
| !!! | GATGAGGGTGGTGGGTTTTT+AGG | + | chr2_1:77422899-77422918 | Msa0226940:CDS | 50.0% |
| ! | CCAGACCCGTGATTTGGAAT+AGG | - | chr2_1:77422995-77423014 | None:intergenic | 50.0% |
| CCTATTCCAAATCACGGGTC+TGG | + | chr2_1:77422992-77423011 | Msa0226940:CDS | 50.0% | |
| !! | AGTTGATGGGGAATGGGGTT+TGG | + | chr2_1:77423353-77423372 | Msa0226940:CDS | 50.0% |
| ! | GTTGATGGGGAATGGGGTTT+GGG | + | chr2_1:77423354-77423373 | Msa0226940:CDS | 50.0% |
| GAGCTTGACTTCAGCTGCAT+CGG | + | chr2_1:77423456-77423475 | Msa0226940:CDS | 50.0% | |
| CCTACTCGGTTCATCTTCTG+CGG | - | chr2_1:77423691-77423710 | None:intergenic | 50.0% | |
| AGGGCTGACTGCAATTCTGT+TGG | + | chr2_1:77423987-77424006 | Msa0226940:CDS | 50.0% | |
| ! | GCAACAACGGCTGTTTCGTT+AGG | + | chr2_1:77424072-77424091 | Msa0226940:CDS | 50.0% |
| GAGATTTGAGCCGCGTAGAA+CGG | + | chr2_1:77424139-77424158 | Msa0226940:CDS | 50.0% | |
| GTGGTTGTTGTAGGGTGGTG+CGG | - | chr2_1:77418124-77418143 | None:intergenic | 55.0% | |
| CCGTTGTGGTTGTTGTAGGG+TGG | - | chr2_1:77418129-77418148 | None:intergenic | 55.0% | |
| GCGCCGTTGTGGTTGTTGTA+GGG | - | chr2_1:77418132-77418151 | None:intergenic | 55.0% | |
| !! | TGCAGCGTAGGGGTATTGAG+GGG | - | chr2_1:77418157-77418176 | None:intergenic | 55.0% |
| !! | GTGCAGCGTAGGGGTATTGA+GGG | - | chr2_1:77418158-77418177 | None:intergenic | 55.0% |
| ! | TATTGAGGGGGTGCAGCGTA+GGG | - | chr2_1:77418168-77418187 | None:intergenic | 55.0% |
| !! | GGGGGTGGGTTGTAGTATTG+AGG | - | chr2_1:77418183-77418202 | None:intergenic | 55.0% |
| ! | AAAAGGCGCGGAAGAAGGAG+CGG | - | chr2_1:77418224-77418243 | None:intergenic | 55.0% |
| ! | TCATGGTGGCGAAAAAGGCG+CGG | - | chr2_1:77418236-77418255 | None:intergenic | 55.0% |
| GATTACGGCGAGGCAGATCA+TGG | - | chr2_1:77418253-77418272 | None:intergenic | 55.0% | |
| TTACGCCGAAGATTACGGCG+AGG | - | chr2_1:77418263-77418282 | None:intergenic | 55.0% | |
| GCGTAATCCTCGTCATCACC+TGG | + | chr2_1:77418277-77418296 | Msa0226940:CDS | 55.0% | |
| AGAAGGACGAAGGACAAGCC+AGG | - | chr2_1:77418298-77418317 | None:intergenic | 55.0% | |
| AGGATGGGAGAGAAGGACGA+AGG | - | chr2_1:77418308-77418327 | None:intergenic | 55.0% | |
| GGAGAGAGTGGTGAGAGTGA+AGG | - | chr2_1:77418328-77418347 | None:intergenic | 55.0% | |
| !! | GGAGGTGTTGAAGGAGGAGA+GGG | - | chr2_1:77418349-77418368 | None:intergenic | 55.0% |
| !! | AGGAGGTGTTGAAGGAGGAG+AGG | - | chr2_1:77418350-77418369 | None:intergenic | 55.0% |
| !! | TTGGGAGGAGGTGTTGAAGG+AGG | - | chr2_1:77418355-77418374 | None:intergenic | 55.0% |
| !! | GGATTGGGAGGAGGTGTTGA+AGG | - | chr2_1:77418358-77418377 | None:intergenic | 55.0% |
| GGACACCTCGACACCGATAA+TGG | + | chr2_1:77419409-77419428 | Msa0226940:intron | 55.0% | |
| AGTCTGCTTGGGATCTGTGC+TGG | + | chr2_1:77420704-77420723 | Msa0226940:intron | 55.0% | |
| ! | GAGTCCTGACTCGTGACTCA+TGG | + | chr2_1:77420839-77420858 | Msa0226940:intron | 55.0% |
| ACAGCCATGAGTCACGAGTC+AGG | - | chr2_1:77420846-77420865 | None:intergenic | 55.0% | |
| TGACTCGTGACTCATGGCTG+TGG | + | chr2_1:77420845-77420864 | Msa0226940:intron | 55.0% | |
| AGTATGTACTCCCTCCGTCC+CGG | + | chr2_1:77420986-77421005 | Msa0226940:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr2_1:77420999-77421018 | None:intergenic | 55.0% | |
| GGTCAGATATTTCGGGACGG+AGG | - | chr2_1:77422544-77422563 | None:intergenic | 55.0% | |
| GGTACACCAGACCCGTGATT+TGG | - | chr2_1:77423001-77423020 | None:intergenic | 55.0% | |
| AATCACGGGTCTGGTGTACC+TGG | + | chr2_1:77423001-77423020 | Msa0226940:CDS | 55.0% | |
| ATGCTATGGGTAGGCCTGCT+AGG | + | chr2_1:77423218-77423237 | Msa0226940:CDS | 55.0% | |
| GGGGGATGTTATGTCCGGTT+CGG | + | chr2_1:77423306-77423325 | Msa0226940:CDS | 55.0% | |
| ! | GGAATGGGGTTTGGGATCAG+AGG | + | chr2_1:77423362-77423381 | Msa0226940:CDS | 55.0% |
| CTTGACTTCAGCTGCATCGG+TGG | + | chr2_1:77423459-77423478 | Msa0226940:CDS | 55.0% | |
| CCGCAGAAGATGAACCGAGT+AGG | + | chr2_1:77423688-77423707 | Msa0226940:CDS | 55.0% | |
| TATGCTGCAACGGCACTGTC+CGG | + | chr2_1:77423742-77423761 | Msa0226940:CDS | 55.0% | |
| TGTTGTAGGGTGGTGCGGCT+GGG | - | chr2_1:77418119-77418138 | None:intergenic | 60.0% | |
| TTGTTGTAGGGTGGTGCGGC+TGG | - | chr2_1:77418120-77418139 | None:intergenic | 60.0% | |
| GGCGCCGTTGTGGTTGTTGT+AGG | - | chr2_1:77418133-77418152 | None:intergenic | 60.0% | |
| !! | AGCGTAGGGGTATTGAGGGG+CGG | - | chr2_1:77418154-77418173 | None:intergenic | 60.0% |
| !! | GGTGCAGCGTAGGGGTATTG+AGG | - | chr2_1:77418159-77418178 | None:intergenic | 60.0% |
| ! | ATTGAGGGGGTGCAGCGTAG+GGG | - | chr2_1:77418167-77418186 | None:intergenic | 60.0% |
| ! | GTATTGAGGGGGTGCAGCGT+AGG | - | chr2_1:77418169-77418188 | None:intergenic | 60.0% |
| GAAGAAGGAGCGGGAAGCGA+AGG | - | chr2_1:77418214-77418233 | None:intergenic | 60.0% | |
| ! | AAAGGCGCGGAAGAAGGAGC+GGG | - | chr2_1:77418223-77418242 | None:intergenic | 60.0% |
| ! | GGCGAAAAAGGCGCGGAAGA+AGG | - | chr2_1:77418229-77418248 | None:intergenic | 60.0% |
| TACGGCGAGGCAGATCATGG+TGG | - | chr2_1:77418250-77418269 | None:intergenic | 60.0% | |
| ! | GGACAAGCCAGGTGATGACG+AGG | - | chr2_1:77418287-77418306 | None:intergenic | 60.0% |
| GAAGGAGGAGAGGGAGAGAG+TGG | - | chr2_1:77418340-77418359 | None:intergenic | 60.0% | |
| ACCTCCTCCCAATCCCTCAC+CGG | + | chr2_1:77418363-77418382 | Msa0226940:CDS | 60.0% | |
| AAAGGTGAGACGCCACGTGC+CGG | - | chr2_1:77418385-77418404 | None:intergenic | 60.0% | |
| !! | TCCTGGGATTAGGAGTGCCC+CGG | - | chr2_1:77419506-77419525 | None:intergenic | 60.0% |
| GGGAACCCGAATCAGCCTGT+AGG | - | chr2_1:77420669-77420688 | None:intergenic | 60.0% | |
| !! | GGCTGATTCGGGTTCCCATG+TGG | + | chr2_1:77420672-77420691 | Msa0226940:intron | 60.0% |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr2_1:77421000-77421019 | None:intergenic | 60.0% | |
| GAAGCGAAGGAGCGAGGTGG+GGG | - | chr2_1:77418201-77418220 | None:intergenic | 65.0% | |
| GGAAGCGAAGGAGCGAGGTG+GGG | - | chr2_1:77418202-77418221 | None:intergenic | 65.0% | |
| GGGAAGCGAAGGAGCGAGGT+GGG | - | chr2_1:77418203-77418222 | None:intergenic | 65.0% | |
| ! | CCACGTGCCGGTGAGGGATT+GGG | - | chr2_1:77418373-77418392 | None:intergenic | 65.0% |
| ! | ACCGGGGCACTCCTAATCCC+AGG | + | chr2_1:77419502-77419521 | Msa0226940:intron | 65.0% |
| TGCGGCTGGGTAGCCGGTAG+CGG | - | chr2_1:77418106-77418125 | None:intergenic | 70.0% | |
| ATTGAGGGGCGGCGCCGTTG+TGG | - | chr2_1:77418143-77418162 | None:intergenic | 70.0% | |
| CGAAGGAGCGAGGTGGGGGT+GGG | - | chr2_1:77418197-77418216 | None:intergenic | 70.0% | |
| CGGGAAGCGAAGGAGCGAGG+TGG | - | chr2_1:77418204-77418223 | None:intergenic | 70.0% | |
| GAGCGGGAAGCGAAGGAGCG+AGG | - | chr2_1:77418207-77418226 | None:intergenic | 70.0% | |
| GCCGGTGAGGGATTGGGAGG+AGG | - | chr2_1:77418367-77418386 | None:intergenic | 70.0% | |
| ! | CGTGCCGGTGAGGGATTGGG+AGG | - | chr2_1:77418370-77418389 | None:intergenic | 70.0% |
| CCCAATCCCTCACCGGCACG+TGG | + | chr2_1:77418370-77418389 | Msa0226940:CDS | 70.0% | |
| ! | GCCACGTGCCGGTGAGGGAT+TGG | - | chr2_1:77418374-77418393 | None:intergenic | 70.0% |
| ! | GAGACGCCACGTGCCGGTGA+GGG | - | chr2_1:77418379-77418398 | None:intergenic | 70.0% |
| ! | TGAGACGCCACGTGCCGGTG+AGG | - | chr2_1:77418380-77418399 | None:intergenic | 70.0% |
| GCGGCTGGGTAGCCGGTAGC+GGG | - | chr2_1:77418105-77418124 | None:intergenic | 75.0% | |
| GGGTGGTGCGGCTGGGTAGC+CGG | - | chr2_1:77418112-77418131 | None:intergenic | 75.0% | |
| GCGAAGGAGCGAGGTGGGGG+TGG | - | chr2_1:77418198-77418217 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 77418093 | 77424251 | 77418093 | ID=Msa0226940;Name=Msa0226940 |
| chr2_1 | mRNA | 77418093 | 77424251 | 77418093 | ID=Msa0226940-mRNA-1;Parent=Msa0226940;Name=Msa0226940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|672 |
| chr2_1 | exon | 77418093 | 77418625 | 77418093 | ID=Msa0226940-mRNA-1:exon:23603;Parent=Msa0226940-mRNA-1 |
| chr2_1 | exon | 77418783 | 77418879 | 77418783 | ID=Msa0226940-mRNA-1:exon:23604;Parent=Msa0226940-mRNA-1 |
| chr2_1 | exon | 77422863 | 77424251 | 77422863 | ID=Msa0226940-mRNA-1:exon:23605;Parent=Msa0226940-mRNA-1 |
| chr2_1 | CDS | 77418093 | 77418625 | 77418093 | ID=Msa0226940-mRNA-1:cds;Parent=Msa0226940-mRNA-1 |
| chr2_1 | CDS | 77418783 | 77418879 | 77418783 | ID=Msa0226940-mRNA-1:cds;Parent=Msa0226940-mRNA-1 |
| chr2_1 | CDS | 77422863 | 77424251 | 77422863 | ID=Msa0226940-mRNA-1:cds;Parent=Msa0226940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
