AlfalfaGEDB | Msa1119300

M. sativa cultivar zhongmu-4 / Msa1119300

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02469.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119300	XP_024625148.1	95.270	444	19	1	1	444	1	442	0.0	857

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119300	sp\|Q8RWC5\|FLA16_ARATH	77.752	427	88	3	22	447	22	442	0.0	625

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119300	A0A072U3I4	95.270	444	19	1	1	444	1	442	0.0	857

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0131050	Msa1119300	0.855753	5.105172e-62	-8.615850e-47
Msa0138390	Msa1119300	0.849782	2.592220e-60	-8.615850e-47
Msa0226940	Msa1119300	0.805793	1.124448e-49	-8.615850e-47
Msa0240450	Msa1119300	0.844885	5.728585e-59	-8.615850e-47
Msa0270030	Msa1119300	0.859772	3.281768e-63	-8.615850e-47
Msa0309650	Msa1119300	0.813545	2.424655e-51	-8.615850e-47
Msa0315930	Msa1119300	0.811034	8.568024e-51	-8.615850e-47
Msa0376450	Msa1119300	0.842130	3.121004e-58	-8.615850e-47
Msa0377320	Msa1119300	0.804185	2.439222e-49	-8.615850e-47
Msa0377970	Msa1119300	0.844900	5.675053e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119300	MtrunA17_Chr7g0267811	95.270	444	19	1	1	444	1	442	0.0	857
Msa1119300	MtrunA17_Chr4g0025311	75.061	409	98	4	31	435	39	447	0.0	560
Msa1119300	MtrunA17_Chr2g0322251	68.159	402	115	5	31	431	26	415	3.12e-179	510

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119300	AT2G35860.1	77.752	427	88	3	22	447	22	442	0.0	625
Msa1119300	AT5G06390.1	74.533	428	98	4	4	421	6	432	0.0	610
Msa1119300	AT3G52370.2	74.641	418	92	4	31	446	80	485	0.0	590
Msa1119300	AT3G52370.1	74.641	418	92	4	31	446	27	432	0.0	586
Msa1119300	AT3G11700.1	74.757	412	92	5	3	402	5	416	0.0	576
Msa1119300	AT5G05650.1	59.574	94	34	1	313	406	2	91	1.52e-31	118

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Find 184 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCGAAGAAGCCGTC+GGG	0.532193	7_3:-68151290	Msa1119300:CDS
AAAATGAGAGTGTGAGAAGG+TGG	0.584230	7_3:+68151545	None:intergenic
AAACAATGCTTTCTGTGTTT+TGG	0.299712	7_3:+68151518	None:intergenic
AAACCCGCACCAGTCCCCGC+CGG	0.600483	7_3:-68150841	Msa1119300:CDS
AAATCTTCTTGTACGGAACG+AGG	0.582319	7_3:+68150949	None:intergenic
AAATGAGAGTGTGAGAAGGT+GGG	0.547231	7_3:+68151546	None:intergenic
AAATGATGACGTGGACCACC+GGG	0.547064	7_3:+68150745	None:intergenic
AACACCGTCAATACCTTGAA+CGG	0.599863	7_3:+68150300	None:intergenic
AACGTCGTTAGCAACGGAAA+TGG	0.374579	7_3:-68150635	Msa1119300:CDS
AAGAATTCAATACCTCTCCT+TGG	0.486760	7_3:+68150190	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAGGAAAGGAAAATAT+TGG	+	chr7_3:68147587-68147606	None:intergenic	30.0%
TTCAATATTGAGATTGTGAG+AGG	+	chr7_3:68147658-68147677	None:intergenic	30.0%
TATAATTCCCGAGTATCAAA+CGG	-	chr7_3:68148865-68148884	Msa1119300:intron	30.0%
TTAGAAGCAACTTTAACAAG+TGG	+	chr7_3:68149145-68149164	None:intergenic	30.0%
TTAAAGTTGCTTCTAAACCA+AGG	-	chr7_3:68149149-68149168	Msa1119300:intron	30.0%
TATTGCATCAAAGCTAAATG+TGG	+	chr7_3:68149488-68149507	None:intergenic	30.0%
CTTCTAGTGAAAATATCCAT+GGG	+	chr7_3:68149694-68149713	None:intergenic	30.0%
TACACGAGAAAATTAAGAGA+GGG	+	chr7_3:68149900-68149919	None:intergenic	30.0%
ATACACGAGAAAATTAAGAG+AGG	+	chr7_3:68149901-68149920	None:intergenic	30.0%
GGAAAAAAATCAGGAAAATG+AGG	+	chr7_3:68150202-68150221	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	68147521	68151857	68147521	ID=Msa1119300;Name=Msa1119300
chr7_3	mRNA	68147521	68151857	68147521	ID=Msa1119300-mRNA-1;Parent=Msa1119300;Name=Msa1119300-mRNA-1;_AED=0.32;_eAED=0.33;_QI=361\|0\|0.5\|1\|1\|1\|4\|0\|492
chr7_3	exon	68147521	68147534	68147521	ID=Msa1119300-mRNA-1:exon:17034;Parent=Msa1119300-mRNA-1
chr7_3	exon	68147625	68147684	68147625	ID=Msa1119300-mRNA-1:exon:17033;Parent=Msa1119300-mRNA-1
chr7_3	exon	68149491	68149601	68149491	ID=Msa1119300-mRNA-1:exon:17032;Parent=Msa1119300-mRNA-1
chr7_3	exon	68150203	68151857	68150203	ID=Msa1119300-mRNA-1:exon:17031;Parent=Msa1119300-mRNA-1
chr7_3	five_prime_UTR	68151497	68151857	68151497	ID=Msa1119300-mRNA-1:five_prime_utr;Parent=Msa1119300-mRNA-1
chr7_3	CDS	68150203	68151496	68150203	ID=Msa1119300-mRNA-1:cds;Parent=Msa1119300-mRNA-1
chr7_3	CDS	68149491	68149601	68149491	ID=Msa1119300-mRNA-1:cds;Parent=Msa1119300-mRNA-1
chr7_3	CDS	68147625	68147684	68147625	ID=Msa1119300-mRNA-1:cds;Parent=Msa1119300-mRNA-1
chr7_3	CDS	68147521	68147534	68147521	ID=Msa1119300-mRNA-1:cds;Parent=Msa1119300-mRNA-1

Gene Sequence

>Msa1119300

ATGGATTTCTATGGTGTCTCCAATTTCATTACCCTCTTCCTTCTTATCCTCCTTCCCCTCCATTCCGCATTACCCACCACCACCACCACCACCGCCCAAATCAACTCCAATTCCATCCTCGTCGCACTTCTCGATTCCCACTACACGGAACTGGCCGAGCTCGTTGAAAAGGCACTTCTTCTTCAAAAGCTCGAAGAAGCCGTCGGGAATCACAACATCACAATCTTCGCACCCAGAAATCAAGCTTTAGAACGTGACCTTGACCCTGAATTCAAAAGATTCCTCTTAGAACCACGCAATCTCAGGTCACTCCAGACTCTTTTAATGTCTCACATTCTTCCTTCAAGAATCGCTTCACATCATTGGCCAGCCACTCATCTCCACCACCACACTCTCTCCAACCACCGTCTTCACCTCACCACAAACCCCACCGGAGCTAAAACCGTTGATTCCGCTGAGATCCTTAAACCAGACGACGTTATCCGTCCAGACGGCGTCATCCACGGCATCGAACGCTTGATAATCCCTCGTTCCGTACAAGAAGATTTCAACCGGAGAAGAAACCTCCGTGACATCTCCGCTATTCTTCCAGAAGGAGCACCGGAGGTAGATCCACGTACAAACCGCTTAAAGAAACCCGCACCAGTCCCCGCCGGAGCTCCACCGGTGCTACCAATCTACGACGCATTAGCACCAGGTCCATCACTAGCACCAGCACCGGCACCAGGTCCCGGTGGTCCACGTCATCATTTCAACGGCGAACGTCAAGTAAAGGATTTCATCCAAACTCTTCTCCATTACGGTGGTTACAATGAAATGGCGGATATTCTGGTTAACCTAACGTCGTTAGCAACGGAAATGGGTCGTTTAGTTTCTGAAGGATATGTTCTAACAGTTTTGGCTCCAAATGATGAAGCAATGGCGAAATTAACGACTGATCAATTATCGGAACCAGGTGCACCGGAACAAATTATATACTATCATATAATTCCCGAGTATCAAACGGAGGAGAGTATGTATAACGCCGTTAGAAGATTTGGGAAAATTAGTTATGATACGTTGCGTTTGCCTCATAAAGTTGTTGCTCAGGAATCTGACGGTTCTGTTAAATTTGGTCACGGTGATTCTTCTGCTTATTTGTTTGATCCTGATATTTACACCGACGGTAGAATTTCCGTTCAAGGTATTGACGGTGTTCTTTTGCCACCGGAGGAAGAGAATGAAGATGAATCATCAGCACCTATTCGCCGTGCAAAAACTCCACTTGTTAAAGTTGCTTCTAAACCAAGGAGAGAACAAATGGTGAACCTCGAAATTGAAGGAATGTCGAGTAGTATGATGAACAAAGCCAGCAGTAGCCGCAGCAAAACCCCAAAAGAAAGTGTTGTTGCTGATTTCAAAGCTGATGTGAATGAGCACCCAATGGTTAGACATAAGGCTGCTGAAGCTTCTGGTTCAATTGCAGGCCATGTTTACTAG

Protein sequence

>Msa1119300

MDFYGVSNFITLFLLILLPLHSALPTTTTTTAQINSNSILVALLDSHYTELAELVEKALLLQKLEEAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPSRIASHHWPATHLHHHTLSNHRLHLTTNPTGAKTVDSAEILKPDDVIRPDGVIHGIERLIIPRSVQEDFNRRRNLRDISAILPEGAPEVDPRTNRLKKPAPVPAGAPPVLPIYDALAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKISYDTLRLPHKVVAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLLPPEEENEDESSAPIRRAKTPLVKVASKPRREQMVNLEIEGMSSSMMNKASSSRSKTPKESVVADFKADVNEHPMVRHKAAEASGSIAGHVY*