AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1358610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358610 MtrunA17_Chr3g0143441 99.167 360 3 0 1 360 1 360 0.0 744
Msa1358610 MtrunA17_Chr3g0089671 41.369 336 179 4 39 359 8 340 1.23e-87 268
Msa1358610 MtrunA17_Chr1g0150551 27.155 232 145 5 77 290 72 297 3.44e-15 75.9
Msa1358610 MtrunA17_Chr4g0018381 30.723 166 109 2 70 229 17 182 7.33e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358610 AT1G20330.1 86.761 355 47 0 1 355 1 355 0.0 665
Msa1358610 AT1G76090.1 81.742 356 65 0 1 356 1 356 0.0 643
Msa1358610 AT5G13710.1 40.729 329 183 2 39 355 8 336 6.01e-87 266
Msa1358610 AT5G13710.2 40.729 329 183 2 39 355 8 336 6.01e-87 266
Msa1358610 AT1G64970.1 23.607 305 204 7 66 354 56 347 1.48e-14 74.3
Msa1358610 AT1G73600.1 31.776 107 71 1 116 222 274 378 8.12e-11 63.5
Msa1358610 AT1G73600.2 31.776 107 71 1 116 222 288 392 9.84e-11 63.5

Find 93 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCGGTTTCGATCTCTTT+TGG 0.211288 tig0016355:-22743 None:intergenic
CGCGCCGTCGAAGCTGTTAT+TGG 0.221898 tig0016355:-23125 None:intergenic
AAATGGGTCGGATTGCTTAT+TGG 0.263397 tig0016355:+23443 Msa1358610:CDS
GAAAGAGGTGATGCGCTTCC+TGG 0.264267 tig0016355:+23310 Msa1358610:CDS
CTCTTTACGTTTCATATGAA+TGG 0.284632 tig0016355:+23227 Msa1358610:CDS
ATGGTGGACCCGTTTGAAAA+TGG 0.310972 tig0016355:+23426 Msa1358610:CDS
TAAAATGTATCGACGAAATC+TGG 0.322018 tig0016355:-22773 None:intergenic
CGATATTTACGAATGGGGTT+GGG 0.323081 tig0016355:+22808 Msa1358610:CDS
TGAACATCAACGGTTCCTTT+AGG 0.334532 tig0016355:-23511 None:intergenic
GGCATCACGGTCAGATTTAC+CGG 0.342355 tig0016355:-22861 None:intergenic
TAAGTTGAATTATCTTCTTT+TGG 0.351483 tig0016355:-23622 None:intergenic
CATTCACGCGCTAACGTTGT+TGG 0.362166 tig0016355:+22992 Msa1358610:CDS
TACTGGTTCGTTTGCGTCCT+CGG 0.367782 tig0016355:+22614 Msa1358610:CDS
GTAACGGTTCTGTCTGCTTT+GGG 0.376596 tig0016355:+23481 Msa1358610:CDS
GATCTACGGCCATTTCTTCA+TGG 0.377423 tig0016355:-22892 None:intergenic
GGTTGGGTTTGAGGTTGTTA+AGG 0.385526 tig0016355:+23372 Msa1358610:CDS
TCCTCGCCGGCGGTCTCTAC+TGG 0.391323 tig0016355:+22597 Msa1358610:CDS
GGTTGTTAAGGAACGGGATC+TGG 0.398392 tig0016355:+23384 Msa1358610:CDS
GGTAACGGTTCTGTCTGCTT+TGG 0.405488 tig0016355:+23480 Msa1358610:CDS
CACCCGCCTCCATGAAGAAA+TGG 0.407729 tig0016355:+22883 Msa1358610:CDS
GGCTAAGAAGGTTGGGTTTG+AGG 0.408359 tig0016355:+23363 Msa1358610:CDS
ACAGAACCGTTACCACAATA+TGG 0.417640 tig0016355:-23471 None:intergenic
CCAACCCCATTCGTAAATAT+CGG 0.433176 tig0016355:-22807 None:intergenic
GATCTAATCGAGGTTAAATC+TGG 0.437762 tig0016355:+22911 Msa1358610:CDS
CGTTACCGATATTTACGAAT+GGG 0.442701 tig0016355:+22802 Msa1358610:CDS
CCGATATTTACGAATGGGGT+TGG 0.443208 tig0016355:+22807 Msa1358610:CDS
TCTTTACGTTTCATATGAAT+GGG 0.443318 tig0016355:+23228 Msa1358610:CDS
GTTTGAGGTTGTTAAGGAAC+GGG 0.444084 tig0016355:+23378 Msa1358610:CDS
TGGTGGACCCGTTTGAAAAT+GGG 0.448669 tig0016355:+23427 Msa1358610:CDS
GAACATGTTGAGATTATTCA+AGG 0.452409 tig0016355:+23283 Msa1358610:CDS
GATATTTACGAATGGGGTTG+GGG 0.457811 tig0016355:+22809 Msa1358610:CDS
GCGCCGTCGAAGCTGTTATT+GGG 0.458017 tig0016355:-23124 None:intergenic
CTCCGGTGCAGAAGAGAGAA+AGG 0.458720 tig0016355:-22571 None:intergenic
CTGAAGCGGCTAAGAAGGTT+GGG 0.459708 tig0016355:+23356 Msa1358610:CDS
GCGTAAACTTCTTCAAGATT+AGG 0.459835 tig0016355:-23175 None:intergenic
AGTATTTATCGTAACTGTCT+TGG 0.460133 tig0016355:-22703 None:intergenic
CGGCCATTTCTTCATGGAGG+CGG 0.460343 tig0016355:-22886 None:intergenic
GGCCATTTCTTCATGGAGGC+GGG 0.483293 tig0016355:-22885 None:intergenic
ACCGCCGGCGAGGAGGGCTC+CGG 0.486822 tig0016355:-22588 None:intergenic
CTCGATGTAGGTTGCGGTGT+TGG 0.487116 tig0016355:+22944 Msa1358610:CDS
CTCAGCCACCGTCTCATCCA+TGG 0.489785 tig0016355:+23407 Msa1358610:CDS
ATTATTCAAGGTATTGAAAG+AGG 0.496602 tig0016355:+23295 Msa1358610:CDS
ACCCTTTCTCTCTTCTGCAC+CGG 0.497665 tig0016355:+22569 Msa1358610:CDS
AAAGAGGTGATGCGCTTCCT+GGG 0.500216 tig0016355:+23311 Msa1358610:CDS
TCTCTATGCGATGTTGTTTG+TGG 0.500320 tig0016355:+23079 Msa1358610:CDS
GCTGAAGCGGCTAAGAAGGT+TGG 0.506568 tig0016355:+23355 Msa1358610:CDS
ATGAGACGCGATAGCTCTCA+TGG 0.507512 tig0016355:-22972 None:intergenic
GATGTAGGTTGCGGTGTTGG+TGG 0.513870 tig0016355:+22947 Msa1358610:CDS
TATAGCTGAAGCGGCTAAGA+AGG 0.514512 tig0016355:+23351 Msa1358610:CDS
GGTGATAAAATTCTCGATGT+AGG 0.518771 tig0016355:+22932 Msa1358610:CDS
TTTAACCTCGATTAGATCTA+CGG 0.521898 tig0016355:-22906 None:intergenic
AAGACAGTTACGATAAATAC+TGG 0.522518 tig0016355:+22705 Msa1358610:CDS
CATGGAGGCGGGTGGCATCA+CGG 0.523913 tig0016355:-22874 None:intergenic
TTCAGCGGAAATTGAACCGC+CGG 0.527269 tig0016355:-22675 None:intergenic
GCTTTGGGAATTGCACCTAA+AGG 0.533645 tig0016355:+23496 Msa1358610:CDS
ATGTAGGTTGCGGTGTTGGT+GGG 0.535396 tig0016355:+22948 Msa1358610:CDS
TCGAAGCTGTTATTGGGAAA+CGG 0.537800 tig0016355:-23118 None:intergenic
GGTTTGAGGTTGTTAAGGAA+CGG 0.540682 tig0016355:+23377 Msa1358610:CDS
TCAGCGTAGGTTCTAAGCCC+AGG 0.541956 tig0016355:-23328 None:intergenic
TCAGATTTACCGGGAATAGC+GGG 0.543231 tig0016355:-22851 None:intergenic
GTAGAGACCGCCGGCGAGGA+GGG 0.547296 tig0016355:-22594 None:intergenic
CTGCAGAGAATCATGTGCAT+AGG 0.550727 tig0016355:-23595 None:intergenic
CTACGCTGATATAGCTGAAG+CGG 0.552632 tig0016355:+23342 Msa1358610:CDS
AATTGAACCGCCGGATAGAT+CGG 0.553673 tig0016355:-22666 None:intergenic
ACCGGAGCCCTCCTCGCCGG+CGG 0.554746 tig0016355:+22587 Msa1358610:CDS
GTCAGATTTACCGGGAATAG+CGG 0.555781 tig0016355:-22852 None:intergenic
GCGTAACCATATTGTGGTAA+CGG 0.558003 tig0016355:+23465 Msa1358610:CDS
TGCACCGGAGCCCTCCTCGC+CGG 0.559092 tig0016355:+22584 Msa1358610:CDS
AAAATTCTCGATGTAGGTTG+CGG 0.567893 tig0016355:+22938 Msa1358610:CDS
CATTTCTTCATGGAGGCGGG+TGG 0.572835 tig0016355:-22882 None:intergenic
TCGTTACCGATATTTACGAA+TGG 0.576012 tig0016355:+22801 Msa1358610:CDS
CGGGTCCACCATGGATGAGA+CGG 0.590737 tig0016355:-23415 None:intergenic
TTTCCCAATAACAGCTTCGA+CGG 0.594298 tig0016355:+23121 Msa1358610:CDS
TTATTGGCGTAACCATATTG+TGG 0.596355 tig0016355:+23459 Msa1358610:CDS
CGCTTCAGCTATATCAGCGT+AGG 0.600324 tig0016355:-23341 None:intergenic
TATGAAACGTAAAGAGCACC+AGG 0.603847 tig0016355:-23220 None:intergenic
GTTACCGATATTTACGAATG+GGG 0.610865 tig0016355:+22803 Msa1358610:CDS
AACGAACCAGTAGAGACCGC+CGG 0.612867 tig0016355:-22603 None:intergenic
AGTAGAGACCGCCGGCGAGG+AGG 0.613500 tig0016355:-22595 None:intergenic
CTTCTTCAAGATTAGGCGCG+TGG 0.615214 tig0016355:-23168 None:intergenic
TCCGGTGCAGAAGAGAGAAA+GGG 0.624782 tig0016355:-22570 None:intergenic
GGACCCGTTTGAAAATGGGT+CGG 0.636433 tig0016355:+23431 Msa1358610:CDS
ACCAGTAGAGACCGCCGGCG+AGG 0.640194 tig0016355:-22598 None:intergenic
CAGCATCTCATGAACATCAA+CGG 0.644005 tig0016355:-23521 None:intergenic
GCATCACGGTCAGATTTACC+GGG 0.648477 tig0016355:-22860 None:intergenic
CGCGCCACCGATCTATCCGG+CGG 0.666165 tig0016355:+22659 Msa1358610:CDS
AGCCACCGTCTCATCCATGG+TGG 0.669559 tig0016355:+23410 Msa1358610:CDS
TGAGACGCGATAGCTCTCAT+GGG 0.676213 tig0016355:-22971 None:intergenic
GTCCACCATGGATGAGACGG+TGG 0.682031 tig0016355:-23412 None:intergenic
CTACGGCCATTTCTTCATGG+AGG 0.696293 tig0016355:-22889 None:intergenic
TGAACCGCCGGATAGATCGG+TGG 0.706847 tig0016355:-22663 None:intergenic
GAAATCTGGAACTTTCTCAG+CGG 0.713889 tig0016355:-22759 None:intergenic
AATGGCCGTAGATCTAATCG+AGG 0.723393 tig0016355:+22901 Msa1358610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTGAATTATCTTCTTT+TGG - tig0016355:23625-23644 None:intergenic 20.0%
!!! TAAGTTGAATTATCTTCTTT+TGG - tig0016355:23625-23644 None:intergenic 20.0%
! AAATTACACAACAAAAAAGC+TGG + tig0016355:23049-23068 Msa1358610:CDS 25.0%
!! AAGTTTACGCTGAAATTTTT+AGG + tig0016355:23188-23207 Msa1358610:CDS 25.0%
!! AGTTTACGCTGAAATTTTTA+GGG + tig0016355:23189-23208 Msa1358610:CDS 25.0%
! TCTTTACGTTTCATATGAAT+GGG + tig0016355:23228-23247 Msa1358610:CDS 25.0%
!!! ATTATTCAAGGTATTGAAAG+AGG + tig0016355:23295-23314 Msa1358610:CDS 25.0%
! AAATTACACAACAAAAAAGC+TGG + tig0016355:23049-23068 Msa1358610:CDS 25.0%
!! AAGTTTACGCTGAAATTTTT+AGG + tig0016355:23188-23207 Msa1358610:CDS 25.0%
!! AGTTTACGCTGAAATTTTTA+GGG + tig0016355:23189-23208 Msa1358610:CDS 25.0%
! TCTTTACGTTTCATATGAAT+GGG + tig0016355:23228-23247 Msa1358610:CDS 25.0%
!!! ATTATTCAAGGTATTGAAAG+AGG + tig0016355:23295-23314 Msa1358610:CDS 25.0%
AGTATTTATCGTAACTGTCT+TGG - tig0016355:22706-22725 None:intergenic 30.0%
AAGACAGTTACGATAAATAC+TGG + tig0016355:22705-22724 Msa1358610:CDS 30.0%
! TAAAATGTATCGACGAAATC+TGG - tig0016355:22776-22795 None:intergenic 30.0%
TTTAACCTCGATTAGATCTA+CGG - tig0016355:22909-22928 None:intergenic 30.0%
!!! ATTTTTAGGGTTTTGAAACC+TGG + tig0016355:23202-23221 Msa1358610:CDS 30.0%
CTCTTTACGTTTCATATGAA+TGG + tig0016355:23227-23246 Msa1358610:CDS 30.0%
GAACATGTTGAGATTATTCA+AGG + tig0016355:23283-23302 Msa1358610:CDS 30.0%
AGTATTTATCGTAACTGTCT+TGG - tig0016355:22706-22725 None:intergenic 30.0%
AAGACAGTTACGATAAATAC+TGG + tig0016355:22705-22724 Msa1358610:CDS 30.0%
! TAAAATGTATCGACGAAATC+TGG - tig0016355:22776-22795 None:intergenic 30.0%
TTTAACCTCGATTAGATCTA+CGG - tig0016355:22909-22928 None:intergenic 30.0%
!!! ATTTTTAGGGTTTTGAAACC+TGG + tig0016355:23202-23221 Msa1358610:CDS 30.0%
CTCTTTACGTTTCATATGAA+TGG + tig0016355:23227-23246 Msa1358610:CDS 30.0%
GAACATGTTGAGATTATTCA+AGG + tig0016355:23283-23302 Msa1358610:CDS 30.0%
TCGTTACCGATATTTACGAA+TGG + tig0016355:22801-22820 Msa1358610:CDS 35.0%
CGTTACCGATATTTACGAAT+GGG + tig0016355:22802-22821 Msa1358610:CDS 35.0%
GTTACCGATATTTACGAATG+GGG + tig0016355:22803-22822 Msa1358610:CDS 35.0%
GATCTAATCGAGGTTAAATC+TGG + tig0016355:22911-22930 Msa1358610:CDS 35.0%
GGTGATAAAATTCTCGATGT+AGG + tig0016355:22932-22951 Msa1358610:CDS 35.0%
AAAATTCTCGATGTAGGTTG+CGG + tig0016355:22938-22957 Msa1358610:CDS 35.0%
GCGTAAACTTCTTCAAGATT+AGG - tig0016355:23178-23197 None:intergenic 35.0%
TTATTGGCGTAACCATATTG+TGG + tig0016355:23459-23478 Msa1358610:CDS 35.0%
TCGTTACCGATATTTACGAA+TGG + tig0016355:22801-22820 Msa1358610:CDS 35.0%
CGTTACCGATATTTACGAAT+GGG + tig0016355:22802-22821 Msa1358610:CDS 35.0%
GTTACCGATATTTACGAATG+GGG + tig0016355:22803-22822 Msa1358610:CDS 35.0%
GATCTAATCGAGGTTAAATC+TGG + tig0016355:22911-22930 Msa1358610:CDS 35.0%
GGTGATAAAATTCTCGATGT+AGG + tig0016355:22932-22951 Msa1358610:CDS 35.0%
AAAATTCTCGATGTAGGTTG+CGG + tig0016355:22938-22957 Msa1358610:CDS 35.0%
GCGTAAACTTCTTCAAGATT+AGG - tig0016355:23178-23197 None:intergenic 35.0%
TTATTGGCGTAACCATATTG+TGG + tig0016355:23459-23478 Msa1358610:CDS 35.0%
!!! ACTGTCTTGGACTTTTTCAG+CGG - tig0016355:22693-22712 None:intergenic 40.0%
! GAAATCTGGAACTTTCTCAG+CGG - tig0016355:22762-22781 None:intergenic 40.0%
CCAACCCCATTCGTAAATAT+CGG - tig0016355:22810-22829 None:intergenic 40.0%
CGATATTTACGAATGGGGTT+GGG + tig0016355:22808-22827 Msa1358610:CDS 40.0%
GATATTTACGAATGGGGTTG+GGG + tig0016355:22809-22828 Msa1358610:CDS 40.0%
!! AATAGCGGGTGAAAAATGGA+AGG - tig0016355:22840-22859 None:intergenic 40.0%
! TCTCTATGCGATGTTGTTTG+TGG + tig0016355:23079-23098 Msa1358610:CDS 40.0%
TCGAAGCTGTTATTGGGAAA+CGG - tig0016355:23121-23140 None:intergenic 40.0%
TTTCCCAATAACAGCTTCGA+CGG + tig0016355:23121-23140 Msa1358610:CDS 40.0%
!! TATGAAACGTAAAGAGCACC+AGG - tig0016355:23223-23242 None:intergenic 40.0%
! GGTTTGAGGTTGTTAAGGAA+CGG + tig0016355:23377-23396 Msa1358610:CDS 40.0%
! GTTTGAGGTTGTTAAGGAAC+GGG + tig0016355:23378-23397 Msa1358610:CDS 40.0%
! AATCCGACCCATTTTCAAAC+GGG - tig0016355:23437-23456 None:intergenic 40.0%
! CAATCCGACCCATTTTCAAA+CGG - tig0016355:23438-23457 None:intergenic 40.0%
AAATGGGTCGGATTGCTTAT+TGG + tig0016355:23443-23462 Msa1358610:CDS 40.0%
GCGTAACCATATTGTGGTAA+CGG + tig0016355:23465-23484 Msa1358610:CDS 40.0%
ACAGAACCGTTACCACAATA+TGG - tig0016355:23474-23493 None:intergenic 40.0%
TGAACATCAACGGTTCCTTT+AGG - tig0016355:23514-23533 None:intergenic 40.0%
CAGCATCTCATGAACATCAA+CGG - tig0016355:23524-23543 None:intergenic 40.0%
!!! ACTGCTGACTTTTTGACAAG+AGG + tig0016355:23550-23569 Msa1358610:CDS 40.0%
!!! CTGCTGACTTTTTGACAAGA+GGG + tig0016355:23551-23570 Msa1358610:CDS 40.0%
!!! TGCTGACTTTTTGACAAGAG+GGG + tig0016355:23552-23571 Msa1358610:CDS 40.0%
!!! ACTGTCTTGGACTTTTTCAG+CGG - tig0016355:22693-22712 None:intergenic 40.0%
! GAAATCTGGAACTTTCTCAG+CGG - tig0016355:22762-22781 None:intergenic 40.0%
CCAACCCCATTCGTAAATAT+CGG - tig0016355:22810-22829 None:intergenic 40.0%
CGATATTTACGAATGGGGTT+GGG + tig0016355:22808-22827 Msa1358610:CDS 40.0%
GATATTTACGAATGGGGTTG+GGG + tig0016355:22809-22828 Msa1358610:CDS 40.0%
!! AATAGCGGGTGAAAAATGGA+AGG - tig0016355:22840-22859 None:intergenic 40.0%
! TCTCTATGCGATGTTGTTTG+TGG + tig0016355:23079-23098 Msa1358610:CDS 40.0%
TCGAAGCTGTTATTGGGAAA+CGG - tig0016355:23121-23140 None:intergenic 40.0%
TTTCCCAATAACAGCTTCGA+CGG + tig0016355:23121-23140 Msa1358610:CDS 40.0%
!! TATGAAACGTAAAGAGCACC+AGG - tig0016355:23223-23242 None:intergenic 40.0%
! GGTTTGAGGTTGTTAAGGAA+CGG + tig0016355:23377-23396 Msa1358610:CDS 40.0%
! GTTTGAGGTTGTTAAGGAAC+GGG + tig0016355:23378-23397 Msa1358610:CDS 40.0%
! AATCCGACCCATTTTCAAAC+GGG - tig0016355:23437-23456 None:intergenic 40.0%
! CAATCCGACCCATTTTCAAA+CGG - tig0016355:23438-23457 None:intergenic 40.0%
AAATGGGTCGGATTGCTTAT+TGG + tig0016355:23443-23462 Msa1358610:CDS 40.0%
GCGTAACCATATTGTGGTAA+CGG + tig0016355:23465-23484 Msa1358610:CDS 40.0%
ACAGAACCGTTACCACAATA+TGG - tig0016355:23474-23493 None:intergenic 40.0%
TGAACATCAACGGTTCCTTT+AGG - tig0016355:23514-23533 None:intergenic 40.0%
CAGCATCTCATGAACATCAA+CGG - tig0016355:23524-23543 None:intergenic 40.0%
!!! ACTGCTGACTTTTTGACAAG+AGG + tig0016355:23550-23569 Msa1358610:CDS 40.0%
!!! CTGCTGACTTTTTGACAAGA+GGG + tig0016355:23551-23570 Msa1358610:CDS 40.0%
!!! TGCTGACTTTTTGACAAGAG+GGG + tig0016355:23552-23571 Msa1358610:CDS 40.0%
AATTGAACCGCCGGATAGAT+CGG - tig0016355:22669-22688 None:intergenic 45.0%
! CAGCGGTTTCGATCTCTTTT+GGG - tig0016355:22745-22764 None:intergenic 45.0%
! TCAGCGGTTTCGATCTCTTT+TGG - tig0016355:22746-22765 None:intergenic 45.0%
CCGATATTTACGAATGGGGT+TGG + tig0016355:22807-22826 Msa1358610:CDS 45.0%
! CATTTTTCACCCGCTATTCC+CGG + tig0016355:22842-22861 Msa1358610:CDS 45.0%
TCAGATTTACCGGGAATAGC+GGG - tig0016355:22854-22873 None:intergenic 45.0%
GTCAGATTTACCGGGAATAG+CGG - tig0016355:22855-22874 None:intergenic 45.0%
GATCTACGGCCATTTCTTCA+TGG - tig0016355:22895-22914 None:intergenic 45.0%
AATGGCCGTAGATCTAATCG+AGG + tig0016355:22901-22920 Msa1358610:CDS 45.0%
CTACGCTGATATAGCTGAAG+CGG + tig0016355:23342-23361 Msa1358610:CDS 45.0%
TATAGCTGAAGCGGCTAAGA+AGG + tig0016355:23351-23370 Msa1358610:CDS 45.0%
! GGTTGGGTTTGAGGTTGTTA+AGG + tig0016355:23372-23391 Msa1358610:CDS 45.0%
! ATTTTCAAACGGGTCCACCA+TGG - tig0016355:23427-23446 None:intergenic 45.0%
!! ATGGTGGACCCGTTTGAAAA+TGG + tig0016355:23426-23445 Msa1358610:CDS 45.0%
! TGGTGGACCCGTTTGAAAAT+GGG + tig0016355:23427-23446 Msa1358610:CDS 45.0%
GTAACGGTTCTGTCTGCTTT+GGG + tig0016355:23481-23500 Msa1358610:CDS 45.0%
!! GCTTTGGGAATTGCACCTAA+AGG + tig0016355:23496-23515 Msa1358610:CDS 45.0%
!! GCTGACTTTTTGACAAGAGG+GGG + tig0016355:23553-23572 Msa1358610:CDS 45.0%
CTGCAGAGAATCATGTGCAT+AGG - tig0016355:23598-23617 None:intergenic 45.0%
AATTGAACCGCCGGATAGAT+CGG - tig0016355:22669-22688 None:intergenic 45.0%
! CAGCGGTTTCGATCTCTTTT+GGG - tig0016355:22745-22764 None:intergenic 45.0%
! TCAGCGGTTTCGATCTCTTT+TGG - tig0016355:22746-22765 None:intergenic 45.0%
CCGATATTTACGAATGGGGT+TGG + tig0016355:22807-22826 Msa1358610:CDS 45.0%
! CATTTTTCACCCGCTATTCC+CGG + tig0016355:22842-22861 Msa1358610:CDS 45.0%
TCAGATTTACCGGGAATAGC+GGG - tig0016355:22854-22873 None:intergenic 45.0%
GTCAGATTTACCGGGAATAG+CGG - tig0016355:22855-22874 None:intergenic 45.0%
GATCTACGGCCATTTCTTCA+TGG - tig0016355:22895-22914 None:intergenic 45.0%
AATGGCCGTAGATCTAATCG+AGG + tig0016355:22901-22920 Msa1358610:CDS 45.0%
CTACGCTGATATAGCTGAAG+CGG + tig0016355:23342-23361 Msa1358610:CDS 45.0%
TATAGCTGAAGCGGCTAAGA+AGG + tig0016355:23351-23370 Msa1358610:CDS 45.0%
! GGTTGGGTTTGAGGTTGTTA+AGG + tig0016355:23372-23391 Msa1358610:CDS 45.0%
! ATTTTCAAACGGGTCCACCA+TGG - tig0016355:23427-23446 None:intergenic 45.0%
!! ATGGTGGACCCGTTTGAAAA+TGG + tig0016355:23426-23445 Msa1358610:CDS 45.0%
! TGGTGGACCCGTTTGAAAAT+GGG + tig0016355:23427-23446 Msa1358610:CDS 45.0%
GTAACGGTTCTGTCTGCTTT+GGG + tig0016355:23481-23500 Msa1358610:CDS 45.0%
!! GCTTTGGGAATTGCACCTAA+AGG + tig0016355:23496-23515 Msa1358610:CDS 45.0%
!! GCTGACTTTTTGACAAGAGG+GGG + tig0016355:23553-23572 Msa1358610:CDS 45.0%
CTGCAGAGAATCATGTGCAT+AGG - tig0016355:23598-23617 None:intergenic 45.0%
ACCCTTTCTCTCTTCTGCAC+CGG + tig0016355:22569-22588 Msa1358610:CDS 50.0%
TCCGGTGCAGAAGAGAGAAA+GGG - tig0016355:22573-22592 None:intergenic 50.0%
!! TACTGGTTCGTTTGCGTCCT+CGG + tig0016355:22614-22633 Msa1358610:CDS 50.0%
! GTTTGCCTTTTCGTTCGGCA+GGG - tig0016355:22640-22659 None:intergenic 50.0%
TTCAGCGGAAATTGAACCGC+CGG - tig0016355:22678-22697 None:intergenic 50.0%
! TTTCGATCTCTTTTGGGCGG+CGG - tig0016355:22739-22758 None:intergenic 50.0%
! CGGTTTCGATCTCTTTTGGG+CGG - tig0016355:22742-22761 None:intergenic 50.0%
!! CGGGAATAGCGGGTGAAAAA+TGG - tig0016355:22844-22863 None:intergenic 50.0%
GCATCACGGTCAGATTTACC+GGG - tig0016355:22863-22882 None:intergenic 50.0%
GGCATCACGGTCAGATTTAC+CGG - tig0016355:22864-22883 None:intergenic 50.0%
CTACGGCCATTTCTTCATGG+AGG - tig0016355:22892-22911 None:intergenic 50.0%
!! ATGTAGGTTGCGGTGTTGGT+GGG + tig0016355:22948-22967 Msa1358610:CDS 50.0%
TGAGACGCGATAGCTCTCAT+GGG - tig0016355:22974-22993 None:intergenic 50.0%
ATGAGACGCGATAGCTCTCA+TGG - tig0016355:22975-22994 None:intergenic 50.0%
CATTCACGCGCTAACGTTGT+TGG + tig0016355:22992-23011 Msa1358610:CDS 50.0%
CTTCTTCAAGATTAGGCGCG+TGG - tig0016355:23171-23190 None:intergenic 50.0%
AAAGAGGTGATGCGCTTCCT+GGG + tig0016355:23311-23330 Msa1358610:CDS 50.0%
CGCTTCAGCTATATCAGCGT+AGG - tig0016355:23344-23363 None:intergenic 50.0%
CTGAAGCGGCTAAGAAGGTT+GGG + tig0016355:23356-23375 Msa1358610:CDS 50.0%
GGCTAAGAAGGTTGGGTTTG+AGG + tig0016355:23363-23382 Msa1358610:CDS 50.0%
GGTTGTTAAGGAACGGGATC+TGG + tig0016355:23384-23403 Msa1358610:CDS 50.0%
GGACCCGTTTGAAAATGGGT+CGG + tig0016355:23431-23450 Msa1358610:CDS 50.0%
! GGTAACGGTTCTGTCTGCTT+TGG + tig0016355:23480-23499 Msa1358610:CDS 50.0%
TTGACAAGAGGGGGTGATAC+TGG + tig0016355:23562-23581 Msa1358610:CDS 50.0%
ACCCTTTCTCTCTTCTGCAC+CGG + tig0016355:22569-22588 Msa1358610:CDS 50.0%
TCCGGTGCAGAAGAGAGAAA+GGG - tig0016355:22573-22592 None:intergenic 50.0%
!! TACTGGTTCGTTTGCGTCCT+CGG + tig0016355:22614-22633 Msa1358610:CDS 50.0%
! GTTTGCCTTTTCGTTCGGCA+GGG - tig0016355:22640-22659 None:intergenic 50.0%
TTCAGCGGAAATTGAACCGC+CGG - tig0016355:22678-22697 None:intergenic 50.0%
! TTTCGATCTCTTTTGGGCGG+CGG - tig0016355:22739-22758 None:intergenic 50.0%
! CGGTTTCGATCTCTTTTGGG+CGG - tig0016355:22742-22761 None:intergenic 50.0%
!! CGGGAATAGCGGGTGAAAAA+TGG - tig0016355:22844-22863 None:intergenic 50.0%
GCATCACGGTCAGATTTACC+GGG - tig0016355:22863-22882 None:intergenic 50.0%
GGCATCACGGTCAGATTTAC+CGG - tig0016355:22864-22883 None:intergenic 50.0%
CTACGGCCATTTCTTCATGG+AGG - tig0016355:22892-22911 None:intergenic 50.0%
!! ATGTAGGTTGCGGTGTTGGT+GGG + tig0016355:22948-22967 Msa1358610:CDS 50.0%
TGAGACGCGATAGCTCTCAT+GGG - tig0016355:22974-22993 None:intergenic 50.0%
ATGAGACGCGATAGCTCTCA+TGG - tig0016355:22975-22994 None:intergenic 50.0%
CATTCACGCGCTAACGTTGT+TGG + tig0016355:22992-23011 Msa1358610:CDS 50.0%
CTTCTTCAAGATTAGGCGCG+TGG - tig0016355:23171-23190 None:intergenic 50.0%
AAAGAGGTGATGCGCTTCCT+GGG + tig0016355:23311-23330 Msa1358610:CDS 50.0%
CGCTTCAGCTATATCAGCGT+AGG - tig0016355:23344-23363 None:intergenic 50.0%
CTGAAGCGGCTAAGAAGGTT+GGG + tig0016355:23356-23375 Msa1358610:CDS 50.0%
GGCTAAGAAGGTTGGGTTTG+AGG + tig0016355:23363-23382 Msa1358610:CDS 50.0%
GGTTGTTAAGGAACGGGATC+TGG + tig0016355:23384-23403 Msa1358610:CDS 50.0%
GGACCCGTTTGAAAATGGGT+CGG + tig0016355:23431-23450 Msa1358610:CDS 50.0%
! GGTAACGGTTCTGTCTGCTT+TGG + tig0016355:23480-23499 Msa1358610:CDS 50.0%
TTGACAAGAGGGGGTGATAC+TGG + tig0016355:23562-23581 Msa1358610:CDS 50.0%
CTCCGGTGCAGAAGAGAGAA+AGG - tig0016355:22574-22593 None:intergenic 55.0%
AACGAACCAGTAGAGACCGC+CGG - tig0016355:22606-22625 None:intergenic 55.0%
! CGTTTGCCTTTTCGTTCGGC+AGG - tig0016355:22641-22660 None:intergenic 55.0%
! GGCGCGTTTGCCTTTTCGTT+CGG - tig0016355:22645-22664 None:intergenic 55.0%
AAACGCGCCACCGATCTATC+CGG + tig0016355:22656-22675 Msa1358610:CDS 55.0%
CATTTCTTCATGGAGGCGGG+TGG - tig0016355:22885-22904 None:intergenic 55.0%
CACCCGCCTCCATGAAGAAA+TGG + tig0016355:22883-22902 Msa1358610:CDS 55.0%
GGCCATTTCTTCATGGAGGC+GGG - tig0016355:22888-22907 None:intergenic 55.0%
CGGCCATTTCTTCATGGAGG+CGG - tig0016355:22889-22908 None:intergenic 55.0%
CTCGATGTAGGTTGCGGTGT+TGG + tig0016355:22944-22963 Msa1358610:CDS 55.0%
! GATGTAGGTTGCGGTGTTGG+TGG + tig0016355:22947-22966 Msa1358610:CDS 55.0%
GCGCCGTCGAAGCTGTTATT+GGG - tig0016355:23127-23146 None:intergenic 55.0%
GAAAGAGGTGATGCGCTTCC+TGG + tig0016355:23310-23329 Msa1358610:CDS 55.0%
!! TCAGCGTAGGTTCTAAGCCC+AGG - tig0016355:23331-23350 None:intergenic 55.0%
GCTGAAGCGGCTAAGAAGGT+TGG + tig0016355:23355-23374 Msa1358610:CDS 55.0%
CTCCGGTGCAGAAGAGAGAA+AGG - tig0016355:22574-22593 None:intergenic 55.0%
AACGAACCAGTAGAGACCGC+CGG - tig0016355:22606-22625 None:intergenic 55.0%
! CGTTTGCCTTTTCGTTCGGC+AGG - tig0016355:22641-22660 None:intergenic 55.0%
! GGCGCGTTTGCCTTTTCGTT+CGG - tig0016355:22645-22664 None:intergenic 55.0%
AAACGCGCCACCGATCTATC+CGG + tig0016355:22656-22675 Msa1358610:CDS 55.0%
CATTTCTTCATGGAGGCGGG+TGG - tig0016355:22885-22904 None:intergenic 55.0%
CACCCGCCTCCATGAAGAAA+TGG + tig0016355:22883-22902 Msa1358610:CDS 55.0%
GGCCATTTCTTCATGGAGGC+GGG - tig0016355:22888-22907 None:intergenic 55.0%
CGGCCATTTCTTCATGGAGG+CGG - tig0016355:22889-22908 None:intergenic 55.0%
CTCGATGTAGGTTGCGGTGT+TGG + tig0016355:22944-22963 Msa1358610:CDS 55.0%
! GATGTAGGTTGCGGTGTTGG+TGG + tig0016355:22947-22966 Msa1358610:CDS 55.0%
GCGCCGTCGAAGCTGTTATT+GGG - tig0016355:23127-23146 None:intergenic 55.0%
GAAAGAGGTGATGCGCTTCC+TGG + tig0016355:23310-23329 Msa1358610:CDS 55.0%
!! TCAGCGTAGGTTCTAAGCCC+AGG - tig0016355:23331-23350 None:intergenic 55.0%
GCTGAAGCGGCTAAGAAGGT+TGG + tig0016355:23355-23374 Msa1358610:CDS 55.0%
TGAACCGCCGGATAGATCGG+TGG - tig0016355:22666-22685 None:intergenic 60.0%
CGCGCCGTCGAAGCTGTTAT+TGG - tig0016355:23128-23147 None:intergenic 60.0%
AAGATTAGGCGCGTGGCACG+TGG - tig0016355:23164-23183 None:intergenic 60.0%
CTCAGCCACCGTCTCATCCA+TGG + tig0016355:23407-23426 Msa1358610:CDS 60.0%
AGCCACCGTCTCATCCATGG+TGG + tig0016355:23410-23429 Msa1358610:CDS 60.0%
GTCCACCATGGATGAGACGG+TGG - tig0016355:23415-23434 None:intergenic 60.0%
CGGGTCCACCATGGATGAGA+CGG - tig0016355:23418-23437 None:intergenic 60.0%
TGAACCGCCGGATAGATCGG+TGG - tig0016355:22666-22685 None:intergenic 60.0%
CGCGCCGTCGAAGCTGTTAT+TGG - tig0016355:23128-23147 None:intergenic 60.0%
AAGATTAGGCGCGTGGCACG+TGG - tig0016355:23164-23183 None:intergenic 60.0%
CTCAGCCACCGTCTCATCCA+TGG + tig0016355:23407-23426 Msa1358610:CDS 60.0%
AGCCACCGTCTCATCCATGG+TGG + tig0016355:23410-23429 Msa1358610:CDS 60.0%
GTCCACCATGGATGAGACGG+TGG - tig0016355:23415-23434 None:intergenic 60.0%
CGGGTCCACCATGGATGAGA+CGG - tig0016355:23418-23437 None:intergenic 60.0%
! CTTTTCGTTCGGCAGGGCCG+AGG - tig0016355:22634-22653 None:intergenic 65.0%
CTCGGCCCTGCCGAACGAAA+AGG + tig0016355:22632-22651 Msa1358610:CDS 65.0%
CATGGAGGCGGGTGGCATCA+CGG - tig0016355:22877-22896 None:intergenic 65.0%
! CTTTTCGTTCGGCAGGGCCG+AGG - tig0016355:22634-22653 None:intergenic 65.0%
CTCGGCCCTGCCGAACGAAA+AGG + tig0016355:22632-22651 Msa1358610:CDS 65.0%
CATGGAGGCGGGTGGCATCA+CGG - tig0016355:22877-22896 None:intergenic 65.0%
GTAGAGACCGCCGGCGAGGA+GGG - tig0016355:22597-22616 None:intergenic 70.0%
AGTAGAGACCGCCGGCGAGG+AGG - tig0016355:22598-22617 None:intergenic 70.0%
TCCTCGCCGGCGGTCTCTAC+TGG + tig0016355:22597-22616 Msa1358610:CDS 70.0%
ACCAGTAGAGACCGCCGGCG+AGG - tig0016355:22601-22620 None:intergenic 70.0%
CGCGCCACCGATCTATCCGG+CGG + tig0016355:22659-22678 Msa1358610:CDS 70.0%
GTAGAGACCGCCGGCGAGGA+GGG - tig0016355:22597-22616 None:intergenic 70.0%
AGTAGAGACCGCCGGCGAGG+AGG - tig0016355:22598-22617 None:intergenic 70.0%
TCCTCGCCGGCGGTCTCTAC+TGG + tig0016355:22597-22616 Msa1358610:CDS 70.0%
ACCAGTAGAGACCGCCGGCG+AGG - tig0016355:22601-22620 None:intergenic 70.0%
CGCGCCACCGATCTATCCGG+CGG + tig0016355:22659-22678 Msa1358610:CDS 70.0%
TGCACCGGAGCCCTCCTCGC+CGG + tig0016355:22584-22603 Msa1358610:CDS 75.0%
TGCACCGGAGCCCTCCTCGC+CGG + tig0016355:22584-22603 Msa1358610:CDS 75.0%
! ACCGGAGCCCTCCTCGCCGG+CGG + tig0016355:22587-22606 Msa1358610:CDS 80.0%
! ACCGCCGGCGAGGAGGGCTC+CGG - tig0016355:22591-22610 None:intergenic 80.0%
! ACCGGAGCCCTCCTCGCCGG+CGG + tig0016355:22587-22606 Msa1358610:CDS 80.0%
! ACCGCCGGCGAGGAGGGCTC+CGG - tig0016355:22591-22610 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0016355 gene 22563 23645 22563 ID=Msa1358610;Name=Msa1358610
tig0016355 mRNA 22563 23645 22563 ID=Msa1358610-mRNA-1;Parent=Msa1358610;Name=Msa1358610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|360
tig0016355 exon 22563 23645 22563 ID=Msa1358610-mRNA-1:exon:10942;Parent=Msa1358610-mRNA-1
tig0016355 CDS 22563 23645 22563 ID=Msa1358610-mRNA-1:cds;Parent=Msa1358610-mRNA-1
Gene Sequence

>Msa1358610

ATGGATACCCTTTCTCTCTTCTGCACCGGAGCCCTCCTCGCCGGCGGTCTCTACTGGTTCGTTTGCGTCCTCGGCCCTGCCGAACGAAAAGGCAAACGCGCCACCGATCTATCCGGCGGTTCAATTTCCGCTGAAAAAGTCCAAGACAGTTACGATAAATACTGGTCTTTCTTCCGCCGCCCAAAAGAGATCGAAACCGCTGAGAAAGTTCCAGATTTCGTCGATACATTTTACAATCTCGTTACCGATATTTACGAATGGGGTTGGGGTCAATCCTTCCATTTTTCACCCGCTATTCCCGGTAAATCTGACCGTGATGCCACCCGCCTCCATGAAGAAATGGCCGTAGATCTAATCGAGGTTAAATCTGGTGATAAAATTCTCGATGTAGGTTGCGGTGTTGGTGGGCCCATGAGAGCTATCGCGTCTCATTCACGCGCTAACGTTGTTGGTATCACGATCAACGAGTATCAAGTGAATCGTGCGAAATTACACAACAAAAAAGCTGGTTTAGATTCTCTATGCGATGTTGTTTGTGGTAATTTTCTTAAGATGCCGTTTCCCAATAACAGCTTCGACGGCGCGTATTCAATTGAAGCCACGTGCCACGCGCCTAATCTTGAAGAAGTTTACGCTGAAATTTTTAGGGTTTTGAAACCTGGTGCTCTTTACGTTTCATATGAATGGGTCACAACTGAGAAATTTGTAGCTGAAAACGCTGAACATGTTGAGATTATTCAAGGTATTGAAAGAGGTGATGCGCTTCCTGGGCTTAGAACCTACGCTGATATAGCTGAAGCGGCTAAGAAGGTTGGGTTTGAGGTTGTTAAGGAACGGGATCTGGCTCAGCCACCGTCTCATCCATGGTGGACCCGTTTGAAAATGGGTCGGATTGCTTATTGGCGTAACCATATTGTGGTAACGGTTCTGTCTGCTTTGGGAATTGCACCTAAAGGAACCGTTGATGTTCATGAGATGCTGTTCAAGACTGCTGACTTTTTGACAAGAGGGGGTGATACTGGAATTTTCTCTCCTATGCACATGATTCTCTGCAGAAAACCAAAAGAAGATAATTCAACTTAA

Protein sequence

>Msa1358610

MDTLSLFCTGALLAGGLYWFVCVLGPAERKGKRATDLSGGSISAEKVQDSYDKYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAIPGKSDRDATRLHEEMAVDLIEVKSGDKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRAKLHNKKAGLDSLCDVVCGNFLKMPFPNNSFDGAYSIEATCHAPNLEEVYAEIFRVLKPGALYVSYEWVTTEKFVAENAEHVEIIQGIERGDALPGLRTYADIAEAAKKVGFEVVKERDLAQPPSHPWWTRLKMGRIAYWRNHIVVTVLSALGIAPKGTVDVHEMLFKTADFLTRGGDTGIFSPMHMILCRKPKEDNST*