AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380040 MtrunA17_Chr3g0133161 88.732 284 0 1 1 284 1 252 0.0 500
Msa0380040 MtrunA17_Chr3g0132301 67.658 269 54 2 11 279 8 243 6.75e-129 366
Msa0380040 MtrunA17_Chr5g0426551 66.543 269 57 2 11 279 8 243 2.86e-128 365
Msa0380040 MtrunA17_Chr1g0164601 64.982 277 60 4 1 276 1 241 9.04e-117 335
Msa0380040 MtrunA17_Chr3g0082111 64.621 277 61 4 1 276 31 271 1.70e-115 333
Msa0380040 MtrunA17_Chr2g0325591 57.664 274 81 2 10 283 6 244 2.74e-109 317
Msa0380040 MtrunA17_Chr5g0418971 58.801 267 75 2 11 277 7 238 1.72e-106 310
Msa0380040 MtrunA17_Chr8g0379011 57.621 269 79 2 11 279 7 240 5.61e-106 308
Msa0380040 MtrunA17_Chr2g0283791 56.877 269 80 3 12 280 6 238 2.38e-102 299
Msa0380040 MtrunA17_Chr2g0316011 56.929 267 80 2 11 277 8 239 7.21e-102 298
Msa0380040 MtrunA17_Chr4g0043141 59.483 232 81 2 46 277 14 232 2.55e-95 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380040 AT5G10450.1 74.275 276 39 1 8 283 4 247 4.11e-149 417
Msa0380040 AT5G65430.1 73.188 276 42 1 8 283 4 247 1.78e-147 413
Msa0380040 AT5G10450.2 74.539 271 37 1 8 278 4 242 5.52e-146 409
Msa0380040 AT5G10450.3 74.539 271 37 1 8 278 4 242 1.30e-145 409
Msa0380040 AT5G10450.4 74.539 271 37 1 8 278 4 242 1.42e-145 409
Msa0380040 AT5G65430.2 73.432 271 40 1 8 278 4 242 1.60e-144 406
Msa0380040 AT5G65430.3 73.432 271 40 1 8 278 4 242 6.25e-144 405
Msa0380040 AT1G35160.1 64.835 273 63 2 11 283 11 250 8.74e-126 359
Msa0380040 AT1G78300.1 65.185 270 61 2 10 279 4 240 2.33e-125 358
Msa0380040 AT4G09000.1 64.576 271 63 2 11 281 10 247 1.01e-124 357
Msa0380040 AT3G02520.1 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0380040 AT3G02520.2 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0380040 AT1G35160.2 65.299 268 60 2 11 278 11 245 4.53e-124 356
Msa0380040 AT5G38480.1 64.576 271 63 2 10 280 3 240 5.36e-123 352
Msa0380040 AT4G09000.2 64.925 268 61 2 11 278 10 244 2.32e-122 352
Msa0380040 AT5G38480.3 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0380040 AT5G38480.2 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0380040 AT5G16050.1 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0380040 AT5G16050.2 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0380040 AT1G26480.1 59.551 267 73 2 11 277 10 241 8.95e-109 316
Msa0380040 AT2G42590.2 56.410 273 84 2 11 283 7 244 2.81e-101 297
Msa0380040 AT2G42590.1 56.667 270 82 2 11 280 7 241 1.16e-100 295
Msa0380040 AT2G42590.3 56.667 270 82 2 11 280 7 241 1.48e-100 295
Msa0380040 AT1G34760.1 55.762 269 84 2 11 279 5 238 3.47e-100 294
Msa0380040 AT1G34760.2 55.762 269 84 2 11 279 5 238 3.50e-100 294
Msa0380040 AT1G22300.1 56.044 273 85 2 11 283 5 242 6.92e-97 285
Msa0380040 AT1G22300.2 56.044 273 85 2 11 283 5 242 7.23e-97 285
Msa0380040 AT1G22300.3 55.926 270 84 2 11 280 5 239 1.30e-95 282
Msa0380040 AT1G78220.1 38.346 266 128 3 11 275 5 235 5.98e-55 178
Msa0380040 AT1G22290.1 38.776 196 99 5 14 207 8 184 4.71e-32 117
Msa0380040 AT1G22290.2 38.776 196 99 5 14 207 8 184 1.25e-31 117
Msa0380040 AT2G10450.1 68.421 38 12 0 243 280 16 53 2.30e-11 59.3

Find 71 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATCAATTTATAAATT+AGG 0.111804 3_1:-81564104 None:intergenic
TGCGCCAGATATAATTTAAT+TGG 0.184846 3_1:-81564214 None:intergenic
GCCAATCAATTTATAAATTA+GGG 0.197574 3_1:-81564103 None:intergenic
TATAAGTGTGCTGTCTTTGT+AGG 0.261422 3_1:-81563788 None:intergenic
TGAGCCTTGATATCCCTTAT+AGG 0.276927 3_1:+81564011 Msa0380040:exon
GAATGTTTGTGGTAGTATTC+TGG 0.294961 3_1:+81561953 Msa0380040:CDS
ATACAACCCGTCAACCTATA+AGG 0.301012 3_1:-81564025 None:intergenic
GGGTGATTATCATAGGTATT+TGG 0.311976 3_1:+81562046 Msa0380040:CDS
ACACATACTGTTCTCTGTTT+AGG 0.318322 3_1:-81561665 None:intergenic
ACCCTAATTTATAAATTGAT+TGG 0.328807 3_1:+81564102 Msa0380040:three_prime_UTR
ATCAACTCATCCTATAAGAT+TGG 0.331215 3_1:+81562245 Msa0380040:CDS
TGAGGAAGCAATTGCTGAAC+TGG 0.348492 3_1:+81563747 Msa0380040:CDS
AGAGCCAAACCCAATCTTAT+AGG 0.362825 3_1:-81562255 None:intergenic
AGCTTGTGACATGGCCAAAC+AGG 0.376909 3_1:+81562323 Msa0380040:CDS
AGATCCAATTAAATTATATC+TGG 0.377385 3_1:+81564210 Msa0380040:three_prime_UTR
CGTTAACTCTGATTCAACTT+TGG 0.380898 3_1:-81561931 None:intergenic
TCATCCTATAAGATTGGGTT+TGG 0.386635 3_1:+81562251 Msa0380040:CDS
TGCTTCTTCAAGTGAAAGTA+AGG 0.390843 3_1:+81562004 Msa0380040:CDS
TCAACATAACAGAATCTTTG+TGG 0.397796 3_1:-81562589 None:intergenic
CAGATTAACACAAACCTGTT+TGG 0.398433 3_1:-81562337 None:intergenic
TGAGAGACAACCTCACCCTT+TGG 0.419313 3_1:+81563821 Msa0380040:CDS
TATTTGGCTGAGTTTAAGAT+TGG 0.435348 3_1:+81562062 Msa0380040:CDS
TGATATCCCTTATAGGTTGA+CGG 0.443417 3_1:+81564018 Msa0380040:exon
ATTGCTGAACTGGACACATT+AGG 0.448432 3_1:+81563757 Msa0380040:CDS
TACAACCCGTCAACCTATAA+GGG 0.450779 3_1:-81564024 None:intergenic
TCAACTCATCCTATAAGATT+GGG 0.451846 3_1:+81562246 Msa0380040:CDS
TGGTAGTATTCTGGAGTTGT+TGG 0.453677 3_1:+81561962 Msa0380040:CDS
GATATCCCTTATAGGTTGAC+GGG 0.458675 3_1:+81564019 Msa0380040:exon
AGATGAAGGGTGATTATCAT+AGG 0.459315 3_1:+81562039 Msa0380040:CDS
TATTCTTCCTCTGAAGGAGG+TGG 0.459941 3_1:+81564045 Msa0380040:three_prime_UTR
TCTTGTAAGCGACGGATATG+AGG 0.463010 3_1:-81561800 None:intergenic
ATTTGGATATATTGTCTGAA+TGG 0.473124 3_1:+81564186 Msa0380040:three_prime_UTR
AAGAGAGAAGAGAGAATCAT+GGG 0.475360 3_1:+81561624 Msa0380040:exon
CGTTTCTTCGATTGAACAGA+AGG 0.478904 3_1:+81561857 Msa0380040:CDS
AAAGAGAGAAGAGAGAATCA+TGG 0.480567 3_1:+81561623 Msa0380040:exon
CCTTTGGACTTCTGATGTCC+AGG 0.486316 3_1:+81563837 Msa0380040:CDS
TTTGGATATATTGTCTGAAT+GGG 0.490091 3_1:+81564187 Msa0380040:three_prime_UTR
GTTGTCTTACAAAGCTGCAC+AGG 0.491542 3_1:+81562118 Msa0380040:CDS
TTCATGCAGAAGCTTGTAGT+GGG 0.493249 3_1:+81561738 Msa0380040:CDS
AATCTTATAGGATGAGTTGA+TGG 0.494756 3_1:-81562243 None:intergenic
TCAGAGTTAACGAATGTTTG+TGG 0.495537 3_1:+81561942 Msa0380040:CDS
ATATAAAATTGGCAAGAAAA+CGG 0.499171 3_1:-81564254 None:intergenic
TCGATTGAACAGAAGGAAGA+AGG 0.502247 3_1:+81561864 Msa0380040:CDS
GATATCAAGGCTCATCTAGC+TGG 0.506112 3_1:-81564002 None:intergenic
CTTCATGCAGAAGCTTGTAG+TGG 0.529618 3_1:+81561737 Msa0380040:CDS
TCAACCTATAAGGGATATCA+AGG 0.529736 3_1:-81564015 None:intergenic
CTTTCACTTGAAGAAGCAGA+AGG 0.537834 3_1:-81561999 None:intergenic
ATTTGTGATATAGTGTCGTA+TGG 0.540446 3_1:+81564127 Msa0380040:three_prime_UTR
TAAAATTGCTTGACCAAACA+AGG 0.540686 3_1:-81562564 None:intergenic
GGGTTGTATTCTTCCTCTGA+AGG 0.548463 3_1:+81564039 Msa0380040:three_prime_UTR
CACTACAAGCTTCTGCATGA+AGG 0.552358 3_1:-81561736 None:intergenic
ATTCTTCCTCTGAAGGAGGT+GGG 0.567808 3_1:+81564046 Msa0380040:three_prime_UTR
GTCGCTTACAAGAACGTGAT+CGG 0.573437 3_1:+81561810 Msa0380040:CDS
CAGAGCTTAGCGTCGAAGAG+AGG 0.573495 3_1:+81561775 Msa0380040:CDS
CTGGACATCAGAAGTCCAAA+GGG 0.585147 3_1:-81563836 None:intergenic
AGCTGAACGCTACGAGGAGA+TGG 0.585286 3_1:+81561710 Msa0380040:CDS
TCGACGCTAAGCTCTGATGA+TGG 0.586328 3_1:-81561768 None:intergenic
CATCAGAAGTCCAAAGGGTG+AGG 0.595169 3_1:-81563831 None:intergenic
TCATAGCCCACCTCCTTCAG+AGG 0.601484 3_1:-81564052 None:intergenic
TTGTATTCTTCCTCTGAAGG+AGG 0.611172 3_1:+81564042 Msa0380040:three_prime_UTR
ATCTGACAAAGCTTGTGACA+TGG 0.613255 3_1:+81562314 Msa0380040:CDS
CCTGGACATCAGAAGTCCAA+AGG 0.616148 3_1:-81563837 None:intergenic
AAATTCAACACTAATTGCTG+AGG 0.616281 3_1:+81562613 Msa0380040:CDS
AGATCATGTTGTGCTTGTGA+AGG 0.627894 3_1:+81561899 Msa0380040:CDS
GTTTAAGGATATTGCTGCTG+CGG 0.646957 3_1:+81562215 Msa0380040:intron
GCTAAGCTCTGATGATGGTG+TGG 0.653682 3_1:-81561763 None:intergenic
TCATGCAGAAGCTTGTAGTG+GGG 0.666058 3_1:+81561739 Msa0380040:CDS
AGAGAAGAGAGAATCATGGG+TGG 0.672151 3_1:+81561627 Msa0380040:exon
TCGGATCGCTACGTGCTGCG+TGG 0.678712 3_1:+81561829 Msa0380040:CDS
AGAACAAGCTGAACGCTACG+AGG 0.693981 3_1:+81561704 Msa0380040:CDS
GATCACGTTCTTGTAAGCGA+CGG 0.709037 3_1:-81561808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATCACAAATTAA+AGG - chr3_1:81562502-81562521 None:intergenic 10.0%
!!! GTTTTTTATTATAAGATGAA+GGG + chr3_1:81562026-81562045 Msa0380040:CDS 15.0%
!! TCAAAAAATTTCATAGTTAT+TGG + chr3_1:81562834-81562853 Msa0380040:intron 15.0%
!!! TATGATTTATATTTTAAGCT+CGG - chr3_1:81562935-81562954 None:intergenic 15.0%
!!! GGTTTTTTATTATAAGATGA+AGG + chr3_1:81562025-81562044 Msa0380040:CDS 20.0%
!! TGAGGTTATTATAATCTAAT+GGG + chr3_1:81562631-81562650 Msa0380040:intron 20.0%
!!! AACTATGAAATTTTTTGACT+AGG - chr3_1:81562832-81562851 None:intergenic 20.0%
!! GAGCTTAAAATATAAATCAT+AGG + chr3_1:81562934-81562953 Msa0380040:intron 20.0%
!!! TTTTAAAAAAGGTTTGTGTT+TGG + chr3_1:81563173-81563192 Msa0380040:intron 20.0%
!! TGCATTAAAGAAATCTATAT+TGG + chr3_1:81563208-81563227 Msa0380040:intron 20.0%
!!! AATTCTCTTTTTTTTCTGTT+TGG + chr3_1:81563341-81563360 Msa0380040:intron 20.0%
!!! AATATTGTTATTCATTTGCA+AGG + chr3_1:81563370-81563389 Msa0380040:intron 20.0%
!! ATTATAAAATTAAACAGAGG+GGG - chr3_1:81563592-81563611 None:intergenic 20.0%
!! CATTATAAAATTAAACAGAG+GGG - chr3_1:81563593-81563612 None:intergenic 20.0%
!! GCATTATAAAATTAAACAGA+GGG - chr3_1:81563594-81563613 None:intergenic 20.0%
!! AGCATTATAAAATTAAACAG+AGG - chr3_1:81563595-81563614 None:intergenic 20.0%
!!! AAACAATTTTCTTTTCCTTT+TGG + chr3_1:81563715-81563734 Msa0380040:intron 20.0%
!!! TATGTTAAAAACATTTTACC+TGG - chr3_1:81563858-81563877 None:intergenic 20.0%
!!! GCATTTTGATTAATAATCAT+TGG + chr3_1:81563912-81563931 Msa0380040:intron 20.0%
!! ACCCTAATTTATAAATTGAT+TGG + chr3_1:81564102-81564121 Msa0380040:three_prime_UTR 20.0%
!! GCCAATCAATTTATAAATTA+GGG - chr3_1:81564106-81564125 None:intergenic 20.0%
!! TGCCAATCAATTTATAAATT+AGG - chr3_1:81564107-81564126 None:intergenic 20.0%
!! AAAACAAACATAAAAAAGTC+TGG - chr3_1:81564154-81564173 None:intergenic 20.0%
!! AGATCCAATTAAATTATATC+TGG + chr3_1:81564210-81564229 Msa0380040:three_prime_UTR 20.0%
!! ATTGTTGTGTTTTGTGTTTA+AGG + chr3_1:81562200-81562219 Msa0380040:intron 25.0%
!!! ATCTTGGTTTTTTGTTTGTT+TGG + chr3_1:81562360-81562379 Msa0380040:intron 25.0%
!! ACAAATTAAAGGAAGCATAT+AGG - chr3_1:81562491-81562510 None:intergenic 25.0%
! CTGAGGTTATTATAATCTAA+TGG + chr3_1:81562630-81562649 Msa0380040:intron 25.0%
!!! ATGAAATTTTTTGACTAGGA+GGG - chr3_1:81562828-81562847 None:intergenic 25.0%
!!! TATGAAATTTTTTGACTAGG+AGG - chr3_1:81562829-81562848 None:intergenic 25.0%
! AATTTCATAGTTATTGGAGT+TGG + chr3_1:81562840-81562859 Msa0380040:intron 25.0%
! AATTCTAACTGCAGAAAATT+TGG + chr3_1:81563007-81563026 Msa0380040:intron 25.0%
! AACTGCAAATATATGGATAT+TGG + chr3_1:81563110-81563129 Msa0380040:intron 25.0%
! TTTCATGGTTAAGTTATTGT+GGG + chr3_1:81563136-81563155 Msa0380040:intron 25.0%
!! ACTTGCTAGAGAAAAAAAAA+AGG + chr3_1:81563533-81563552 Msa0380040:intron 25.0%
! TTATTCATCTGCAACAAATT+TGG + chr3_1:81563557-81563576 Msa0380040:intron 25.0%
!! ATTTTCTTTTCCTTTTGGAT+AGG + chr3_1:81563720-81563739 Msa0380040:intron 25.0%
!!! ACAGAAAAATGTTCTGAAAA+GGG - chr3_1:81563888-81563907 None:intergenic 25.0%
! AACTCAGATTATGATCAATT+TGG - chr3_1:81563958-81563977 None:intergenic 25.0%
! AATCTGAGTTAAGCTATATT+TGG + chr3_1:81563968-81563987 Msa0380040:intron 25.0%
!!! GTTTTTTATGTCTCATGATT+TGG + chr3_1:81564169-81564188 Msa0380040:three_prime_UTR 25.0%
! ATTTGGATATATTGTCTGAA+TGG + chr3_1:81564186-81564205 Msa0380040:three_prime_UTR 25.0%
! TTTGGATATATTGTCTGAAT+GGG + chr3_1:81564187-81564206 Msa0380040:three_prime_UTR 25.0%
! TATTTGGCTGAGTTTAAGAT+TGG + chr3_1:81562062-81562081 Msa0380040:CDS 30.0%
! AATCTTATAGGATGAGTTGA+TGG - chr3_1:81562246-81562265 None:intergenic 30.0%
ATCAACTCATCCTATAAGAT+TGG + chr3_1:81562245-81562264 Msa0380040:CDS 30.0%
TCAACTCATCCTATAAGATT+GGG + chr3_1:81562246-81562265 Msa0380040:CDS 30.0%
TAAAATTGCTTGACCAAACA+AGG - chr3_1:81562567-81562586 None:intergenic 30.0%
TCAACATAACAGAATCTTTG+TGG - chr3_1:81562592-81562611 None:intergenic 30.0%
AAATTCAACACTAATTGCTG+AGG + chr3_1:81562613-81562632 Msa0380040:CDS 30.0%
CATCCTTTCATAAGATACAT+AGG - chr3_1:81562744-81562763 None:intergenic 30.0%
AAGAAATTCACAGCATATCT+AGG - chr3_1:81562784-81562803 None:intergenic 30.0%
! TATACGCTCTTTCTTTTACA+TGG + chr3_1:81563044-81563063 Msa0380040:intron 30.0%
ATTTGCAGTTAGACTACTAT+GGG - chr3_1:81563100-81563119 None:intergenic 30.0%
TATTTGCAGTTAGACTACTA+TGG - chr3_1:81563101-81563120 None:intergenic 30.0%
GTAGTCTAACTGCAAATATA+TGG + chr3_1:81563103-81563122 Msa0380040:intron 30.0%
! TATGGATATTGGTAGTTTCA+TGG + chr3_1:81563121-81563140 Msa0380040:intron 30.0%
GTTTCATGGTTAAGTTATTG+TGG + chr3_1:81563135-81563154 Msa0380040:intron 30.0%
TTCATGGTTAAGTTATTGTG+GGG + chr3_1:81563137-81563156 Msa0380040:intron 30.0%
TGAGTGAATTTAACTCAGAA+TGG + chr3_1:81563274-81563293 Msa0380040:intron 30.0%
GAGTGAATTTAACTCAGAAT+GGG + chr3_1:81563275-81563294 Msa0380040:intron 30.0%
AGTGAATTTAACTCAGAATG+GGG + chr3_1:81563276-81563295 Msa0380040:intron 30.0%
AGAATTCTCTCTTTACTCTT+TGG + chr3_1:81563458-81563477 Msa0380040:intron 30.0%
AAAGAAAAGAGAAACACAGA+AGG - chr3_1:81563676-81563695 None:intergenic 30.0%
!! GACAGAAAAATGTTCTGAAA+AGG - chr3_1:81563889-81563908 None:intergenic 30.0%
! GATCAATTTGGAGCAATATT+AGG - chr3_1:81563946-81563965 None:intergenic 30.0%
ATTTGTGATATAGTGTCGTA+TGG + chr3_1:81564127-81564146 Msa0380040:three_prime_UTR 30.0%
TGCGCCAGATATAATTTAAT+TGG - chr3_1:81564217-81564236 None:intergenic 30.0%
AAAGAGAGAAGAGAGAATCA+TGG + chr3_1:81561623-81561642 Msa0380040:exon 35.0%
AAGAGAGAAGAGAGAATCAT+GGG + chr3_1:81561624-81561643 Msa0380040:exon 35.0%
!! TGTTCTCTGTTTAGGTTTTC+TGG - chr3_1:81561660-81561679 None:intergenic 35.0%
ACACATACTGTTCTCTGTTT+AGG - chr3_1:81561668-81561687 None:intergenic 35.0%
CGTTAACTCTGATTCAACTT+TGG - chr3_1:81561934-81561953 None:intergenic 35.0%
TCAGAGTTAACGAATGTTTG+TGG + chr3_1:81561942-81561961 Msa0380040:CDS 35.0%
GAATGTTTGTGGTAGTATTC+TGG + chr3_1:81561953-81561972 Msa0380040:CDS 35.0%
TGCTTCTTCAAGTGAAAGTA+AGG + chr3_1:81562004-81562023 Msa0380040:CDS 35.0%
AGATGAAGGGTGATTATCAT+AGG + chr3_1:81562039-81562058 Msa0380040:CDS 35.0%
GGGTGATTATCATAGGTATT+TGG + chr3_1:81562046-81562065 Msa0380040:CDS 35.0%
TCATCCTATAAGATTGGGTT+TGG + chr3_1:81562251-81562270 Msa0380040:CDS 35.0%
CAGATTAACACAAACCTGTT+TGG - chr3_1:81562340-81562359 None:intergenic 35.0%
GGTTTGTGTTAATCTGATCT+TGG + chr3_1:81562344-81562363 Msa0380040:intron 35.0%
! AGAAGTTTTCTGACCTTGTT+TGG + chr3_1:81562551-81562570 Msa0380040:CDS 35.0%
TGTCAATTGCTCATTCTTAG+TGG - chr3_1:81562668-81562687 None:intergenic 35.0%
GAATGAGCAATTGACATGTT+TGG + chr3_1:81562672-81562691 Msa0380040:intron 35.0%
! GTAAGAAATCCGTTTGACTT+TGG + chr3_1:81562710-81562729 Msa0380040:intron 35.0%
GTGCCTATGTATCTTATGAA+AGG + chr3_1:81562738-81562757 Msa0380040:intron 35.0%
TTCTGATTTACACACTGTGT+TGG + chr3_1:81562972-81562991 Msa0380040:intron 35.0%
TATGGGTTCATTGTTCATTC+AGG - chr3_1:81563083-81563102 None:intergenic 35.0%
! TAAAAGTTTGCTCATGAAGC+TGG + chr3_1:81563234-81563253 Msa0380040:intron 35.0%
! AAAAGTTTGCTCATGAAGCT+GGG + chr3_1:81563235-81563254 Msa0380040:intron 35.0%
ATTAAACAGAGGGGGAAAAA+AGG - chr3_1:81563584-81563603 None:intergenic 35.0%
!! AAGAGTGTTGTTTACCATAC+TGG + chr3_1:81563616-81563635 Msa0380040:intron 35.0%
! ACTTGATAACACAACCAGTA+TGG - chr3_1:81563633-81563652 None:intergenic 35.0%
TATAAGTGTGCTGTCTTTGT+AGG - chr3_1:81563791-81563810 None:intergenic 35.0%
!! GAAAAATGTTCTGAAAAGGG+TGG - chr3_1:81563885-81563904 None:intergenic 35.0%
! AAGCTATATTTGGCTTATGC+AGG + chr3_1:81563978-81563997 Msa0380040:intron 35.0%
TCAACCTATAAGGGATATCA+AGG - chr3_1:81564018-81564037 None:intergenic 35.0%
! TGATATCCCTTATAGGTTGA+CGG + chr3_1:81564018-81564037 Msa0380040:exon 35.0%
TTCATGCAGAAGCTTGTAGT+GGG + chr3_1:81561738-81561757 Msa0380040:CDS 40.0%
CGTTTCTTCGATTGAACAGA+AGG + chr3_1:81561857-81561876 Msa0380040:CDS 40.0%
TCGATTGAACAGAAGGAAGA+AGG + chr3_1:81561864-81561883 Msa0380040:CDS 40.0%
AGATCATGTTGTGCTTGTGA+AGG + chr3_1:81561899-81561918 Msa0380040:CDS 40.0%
!! TGGTAGTATTCTGGAGTTGT+TGG + chr3_1:81561962-81561981 Msa0380040:CDS 40.0%
CTTTCACTTGAAGAAGCAGA+AGG - chr3_1:81562002-81562021 None:intergenic 40.0%
TGAGAAAAAATCTGCTGCTG+AGG + chr3_1:81562088-81562107 Msa0380040:CDS 40.0%
GTTTAAGGATATTGCTGCTG+CGG + chr3_1:81562215-81562234 Msa0380040:intron 40.0%
AGAGCCAAACCCAATCTTAT+AGG - chr3_1:81562258-81562277 None:intergenic 40.0%
ATCTGACAAAGCTTGTGACA+TGG + chr3_1:81562314-81562333 Msa0380040:CDS 40.0%
GCACAAACACCAAAGTCAAA+CGG - chr3_1:81562722-81562741 None:intergenic 40.0%
ATGAAAGGATGTGTGAAAGC+TGG + chr3_1:81562753-81562772 Msa0380040:intron 40.0%
! CTCTTTCTTTTACATGGCTG+TGG + chr3_1:81563050-81563069 Msa0380040:intron 40.0%
! TCCTTTTGGATAGGCTTTTG+AGG + chr3_1:81563729-81563748 Msa0380040:intron 40.0%
TCCTCAAAAGCCTATCCAAA+AGG - chr3_1:81563733-81563752 None:intergenic 40.0%
ATTGCTGAACTGGACACATT+AGG + chr3_1:81563757-81563776 Msa0380040:CDS 40.0%
TGGAGCAATATTAGGAAGAG+AGG - chr3_1:81563938-81563957 None:intergenic 40.0%
TGAGCCTTGATATCCCTTAT+AGG + chr3_1:81564011-81564030 Msa0380040:exon 40.0%
! GATATCCCTTATAGGTTGAC+GGG + chr3_1:81564019-81564038 Msa0380040:exon 40.0%
TACAACCCGTCAACCTATAA+GGG - chr3_1:81564027-81564046 None:intergenic 40.0%
ATACAACCCGTCAACCTATA+AGG - chr3_1:81564028-81564047 None:intergenic 40.0%
! TTGTATTCTTCCTCTGAAGG+AGG + chr3_1:81564042-81564061 Msa0380040:three_prime_UTR 40.0%
AGAGAAGAGAGAATCATGGG+TGG + chr3_1:81561627-81561646 Msa0380040:exon 45.0%
! CTTGTTCTGCGAGTTTTGCT+AGG - chr3_1:81561692-81561711 None:intergenic 45.0%
CACTACAAGCTTCTGCATGA+AGG - chr3_1:81561739-81561758 None:intergenic 45.0%
CTTCATGCAGAAGCTTGTAG+TGG + chr3_1:81561737-81561756 Msa0380040:CDS 45.0%
TCATGCAGAAGCTTGTAGTG+GGG + chr3_1:81561739-81561758 Msa0380040:CDS 45.0%
TCTTGTAAGCGACGGATATG+AGG - chr3_1:81561803-81561822 None:intergenic 45.0%
GATCACGTTCTTGTAAGCGA+CGG - chr3_1:81561811-81561830 None:intergenic 45.0%
GTCGCTTACAAGAACGTGAT+CGG + chr3_1:81561810-81561829 Msa0380040:CDS 45.0%
GTTGTCTTACAAAGCTGCAC+AGG + chr3_1:81562118-81562137 Msa0380040:CDS 45.0%
CAGAATGGGGAAATTGCACA+TGG + chr3_1:81563289-81563308 Msa0380040:intron 45.0%
ATGGGGAAATTGCACATGGA+AGG + chr3_1:81563293-81563312 Msa0380040:intron 45.0%
TGAGGAAGCAATTGCTGAAC+TGG + chr3_1:81563747-81563766 Msa0380040:CDS 45.0%
CTGGACATCAGAAGTCCAAA+GGG - chr3_1:81563839-81563858 None:intergenic 45.0%
GATATCAAGGCTCATCTAGC+TGG - chr3_1:81564005-81564024 None:intergenic 45.0%
GGGTTGTATTCTTCCTCTGA+AGG + chr3_1:81564039-81564058 Msa0380040:three_prime_UTR 45.0%
! TATTCTTCCTCTGAAGGAGG+TGG + chr3_1:81564045-81564064 Msa0380040:three_prime_UTR 45.0%
! ATTCTTCCTCTGAAGGAGGT+GGG + chr3_1:81564046-81564065 Msa0380040:three_prime_UTR 45.0%
!!! TTTATTATATTGAAAATTTT+AGG + chr3_1:81562517-81562536 Msa0380040:intron 5.0%
!!! AACTTATAATTTTTTAAAAA+AGG + chr3_1:81563162-81563181 Msa0380040:intron 5.0%
AGAACAAGCTGAACGCTACG+AGG + chr3_1:81561704-81561723 Msa0380040:CDS 50.0%
!! GCTAAGCTCTGATGATGGTG+TGG - chr3_1:81561766-81561785 None:intergenic 50.0%
! TCGACGCTAAGCTCTGATGA+TGG - chr3_1:81561771-81561790 None:intergenic 50.0%
AGCTTGTGACATGGCCAAAC+AGG + chr3_1:81562323-81562342 Msa0380040:CDS 50.0%
TGAGAGACAACCTCACCCTT+TGG + chr3_1:81563821-81563840 Msa0380040:CDS 50.0%
CATCAGAAGTCCAAAGGGTG+AGG - chr3_1:81563834-81563853 None:intergenic 50.0%
CCTGGACATCAGAAGTCCAA+AGG - chr3_1:81563840-81563859 None:intergenic 50.0%
CCTTTGGACTTCTGATGTCC+AGG + chr3_1:81563837-81563856 Msa0380040:CDS 50.0%
AGCTGAACGCTACGAGGAGA+TGG + chr3_1:81561710-81561729 Msa0380040:CDS 55.0%
! CAGAGCTTAGCGTCGAAGAG+AGG + chr3_1:81561775-81561794 Msa0380040:CDS 55.0%
TCATAGCCCACCTCCTTCAG+AGG - chr3_1:81564055-81564074 None:intergenic 55.0%
TCGGATCGCTACGTGCTGCG+TGG + chr3_1:81561829-81561848 Msa0380040:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81561591 81564261 81561591 ID=Msa0380040;Name=Msa0380040
chr3_1 mRNA 81561591 81564261 81561591 ID=Msa0380040-mRNA-1;Parent=Msa0380040;Name=Msa0380040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|0.5|0.8|0.8|1|1|5|241|284
chr3_1 exon 81561591 81562139 81561591 ID=Msa0380040-mRNA-1:exon:20705;Parent=Msa0380040-mRNA-1
chr3_1 exon 81562222 81562344 81562222 ID=Msa0380040-mRNA-1:exon:20706;Parent=Msa0380040-mRNA-1
chr3_1 exon 81562539 81562634 81562539 ID=Msa0380040-mRNA-1:exon:20707;Parent=Msa0380040-mRNA-1
chr3_1 exon 81563742 81563858 81563742 ID=Msa0380040-mRNA-1:exon:20708;Parent=Msa0380040-mRNA-1
chr3_1 exon 81564000 81564261 81564000 ID=Msa0380040-mRNA-1:exon:20709;Parent=Msa0380040-mRNA-1
chr3_1 five_prime_UTR 81561591 81561641 81561591 ID=Msa0380040-mRNA-1:five_prime_utr;Parent=Msa0380040-mRNA-1
chr3_1 CDS 81561642 81562139 81561642 ID=Msa0380040-mRNA-1:cds;Parent=Msa0380040-mRNA-1
chr3_1 CDS 81562222 81562344 81562222 ID=Msa0380040-mRNA-1:cds;Parent=Msa0380040-mRNA-1
chr3_1 CDS 81562539 81562634 81562539 ID=Msa0380040-mRNA-1:cds;Parent=Msa0380040-mRNA-1
chr3_1 CDS 81563742 81563858 81563742 ID=Msa0380040-mRNA-1:cds;Parent=Msa0380040-mRNA-1
chr3_1 CDS 81564000 81564020 81564000 ID=Msa0380040-mRNA-1:cds;Parent=Msa0380040-mRNA-1
chr3_1 three_prime_UTR 81564021 81564261 81564021 ID=Msa0380040-mRNA-1:three_prime_utr;Parent=Msa0380040-mRNA-1
Gene Sequence

>Msa0380040

ATGGGTGGTGCGATTCCAGAAAACCTAAACAGAGAACAGTATGTGTACCTAGCAAAACTCGCAGAACAAGCTGAACGCTACGAGGAGATGGTCTCCTTCATGCAGAAGCTTGTAGTGGGGTCCACACCATCATCAGAGCTTAGCGTCGAAGAGAGGAACCTCATATCCGTCGCTTACAAGAACGTGATCGGATCGCTACGTGCTGCGTGGAGAATCGTTTCTTCGATTGAACAGAAGGAAGAAGGTAGAAAGAACGAAGATCATGTTGTGCTTGTGAAGGATTACAGATCCAAAGTTGAATCAGAGTTAACGAATGTTTGTGGTAGTATTCTGGAGTTGTTGGATTCGAATCTTATACCTTCTGCTTCTTCAAGTGAAAGTAAGGTTTTTTATTATAAGATGAAGGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGGTGATGAGAAAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGATATTGCTGCTGCGGATCTTCCATCAACTCATCCTATAAGATTGGGTTTGGCTCTGAATTTCTCTGTTTTCTATTACGAAATTCTCAATCAATCTGACAAAGCTTGTGACATGGCCAAACAGGTCAACTTGATAAGAAGTTTTCTGACCTTGTTTGGTCAAGCAATTTTAAGCCACAAAGATTCTGTTATGTTGAAAAATTCAACACTAATTGCTGAGGCTTTTGAGGAAGCAATTGCTGAACTGGACACATTAGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGACCAGCTAGATGAGCCTTGA

Protein sequence

>Msa0380040

MGGAIPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVGSTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTNVCGSILELLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIGDEKKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACDMAKQVNLIRSFLTLFGQAILSHKDSVMLKNSTLIAEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP*