Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227280 | XP_013465310.1 | 94.912 | 452 | 4 | 3 | 1 | 437 | 256 | 703 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227280 | sp|A0A072VMJ3|CN15C_MEDTR | 94.912 | 452 | 4 | 3 | 1 | 437 | 256 | 703 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227280 | A0A396JFQ3 | 94.912 | 452 | 4 | 3 | 1 | 437 | 256 | 703 | 0.0 | 885 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222240 | Msa0227280 | 0.929130 | 1.079552e-92 | -8.615850e-47 |
| Msa0227280 | Msa0263630 | 0.917552 | 4.621802e-86 | -8.615850e-47 |
| Msa0227280 | Msa0301470 | 0.815624 | 8.405111e-52 | -8.615850e-47 |
| Msa0227280 | Msa0716890 | 0.802897 | 4.511223e-49 | -8.615850e-47 |
| Msa0227280 | Msa1406210 | 0.920002 | 2.217762e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227280 | MtrunA17_Chr2g0326871 | 94.912 | 452 | 4 | 3 | 1 | 437 | 256 | 703 | 0.0 | 885 |
| Msa0227280 | MtrunA17_Chr4g0028861 | 80.570 | 386 | 60 | 2 | 1 | 375 | 303 | 684 | 0.0 | 662 |
| Msa0227280 | MtrunA17_Chr1g0181121 | 61.255 | 462 | 149 | 5 | 2 | 437 | 224 | 681 | 0.0 | 600 |
| Msa0227280 | MtrunA17_Chr2g0305771 | 57.419 | 465 | 166 | 6 | 1 | 437 | 227 | 687 | 0.0 | 529 |
| Msa0227280 | MtrunA17_Chr3g0139071 | 56.596 | 470 | 167 | 6 | 1 | 437 | 257 | 722 | 0.0 | 524 |
| Msa0227280 | MtrunA17_Chr7g0228181 | 55.628 | 462 | 176 | 6 | 1 | 437 | 223 | 680 | 3.70e-179 | 516 |
| Msa0227280 | MtrunA17_Chr3g0125651 | 53.992 | 476 | 173 | 7 | 2 | 435 | 216 | 687 | 1.09e-174 | 505 |
| Msa0227280 | MtrunA17_Chr4g0073941 | 55.459 | 458 | 175 | 9 | 1 | 437 | 279 | 728 | 3.58e-166 | 484 |
| Msa0227280 | MtrunA17_Chr4g0001481 | 54.762 | 462 | 173 | 10 | 3 | 435 | 283 | 737 | 4.32e-163 | 477 |
| Msa0227280 | MtrunA17_Chr1g0158861 | 53.978 | 465 | 173 | 9 | 1 | 437 | 263 | 714 | 2.26e-162 | 474 |
| Msa0227280 | MtrunA17_Chr3g0126541 | 53.680 | 462 | 178 | 8 | 1 | 437 | 261 | 711 | 1.52e-161 | 472 |
| Msa0227280 | MtrunA17_Chr7g0275581 | 54.023 | 435 | 169 | 9 | 2 | 416 | 264 | 687 | 1.11e-144 | 429 |
| Msa0227280 | MtrunA17_Chr8g0347121 | 46.122 | 490 | 202 | 8 | 1 | 434 | 240 | 723 | 5.62e-136 | 407 |
| Msa0227280 | MtrunA17_Chr2g0318561 | 37.767 | 421 | 227 | 9 | 3 | 397 | 68 | 479 | 9.34e-84 | 265 |
| Msa0227280 | MtrunA17_Chr2g0326851 | 90.076 | 131 | 9 | 1 | 311 | 437 | 3 | 133 | 6.53e-79 | 240 |
| Msa0227280 | MtrunA17_Chr8g0360821 | 37.755 | 392 | 211 | 9 | 3 | 371 | 246 | 627 | 2.97e-77 | 253 |
| Msa0227280 | MtrunA17_Chr6g0481021 | 35.062 | 405 | 222 | 9 | 1 | 376 | 303 | 695 | 8.70e-69 | 231 |
| Msa0227280 | MtrunA17_Chr7g0218341 | 32.918 | 401 | 239 | 10 | 3 | 382 | 295 | 686 | 3.83e-66 | 224 |
| Msa0227280 | MtrunA17_Chr6g0480781 | 34.328 | 402 | 224 | 11 | 1 | 376 | 349 | 736 | 5.62e-61 | 211 |
| Msa0227280 | MtrunA17_Chr2g0326861 | 95.652 | 92 | 4 | 0 | 1 | 92 | 119 | 210 | 1.28e-60 | 196 |
| Msa0227280 | MtrunA17_Chr6g0480851 | 33.750 | 400 | 229 | 10 | 1 | 376 | 364 | 751 | 4.02e-60 | 209 |
| Msa0227280 | MtrunA17_Chr6g0480671 | 34.466 | 412 | 220 | 12 | 3 | 382 | 373 | 766 | 2.12e-54 | 193 |
| Msa0227280 | MtrunA17_Chr6g0480741 | 31.605 | 405 | 235 | 13 | 1 | 376 | 291 | 682 | 1.03e-52 | 187 |
| Msa0227280 | MtrunA17_Chr6g0480681 | 29.545 | 440 | 262 | 14 | 1 | 414 | 319 | 736 | 2.79e-46 | 170 |
| Msa0227280 | MtrunA17_Chr5g0395421 | 32.123 | 358 | 200 | 13 | 19 | 351 | 18 | 357 | 6.16e-46 | 163 |
| Msa0227280 | MtrunA17_Chr6g0480771 | 35.081 | 248 | 136 | 9 | 137 | 370 | 17 | 253 | 4.03e-31 | 120 |
| Msa0227280 | MtrunA17_Chr6g0480841 | 40.404 | 198 | 98 | 7 | 186 | 370 | 2 | 192 | 1.59e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227280 | AT2G28260.1 | 71.429 | 448 | 101 | 4 | 1 | 437 | 247 | 678 | 0.0 | 653 |
| Msa0227280 | AT2G28260.2 | 71.429 | 448 | 101 | 4 | 1 | 437 | 207 | 638 | 0.0 | 652 |
| Msa0227280 | AT4G30360.1 | 56.317 | 467 | 170 | 5 | 1 | 437 | 255 | 717 | 0.0 | 526 |
| Msa0227280 | AT2G24610.1 | 55.508 | 472 | 167 | 7 | 3 | 435 | 256 | 723 | 1.66e-175 | 509 |
| Msa0227280 | AT2G24610.2 | 55.508 | 472 | 167 | 7 | 3 | 435 | 271 | 738 | 1.01e-174 | 507 |
| Msa0227280 | AT4G30560.5 | 57.081 | 459 | 164 | 10 | 1 | 437 | 257 | 704 | 3.67e-174 | 504 |
| Msa0227280 | AT4G30560.2 | 57.081 | 459 | 164 | 10 | 1 | 437 | 257 | 704 | 3.67e-174 | 504 |
| Msa0227280 | AT4G30560.3 | 57.081 | 459 | 164 | 10 | 1 | 437 | 257 | 704 | 3.67e-174 | 504 |
| Msa0227280 | AT4G30560.1 | 57.081 | 459 | 164 | 10 | 1 | 437 | 283 | 730 | 9.93e-174 | 504 |
| Msa0227280 | AT4G30560.4 | 57.081 | 459 | 164 | 10 | 1 | 437 | 283 | 730 | 9.93e-174 | 504 |
| Msa0227280 | AT2G23980.6 | 55.437 | 469 | 171 | 8 | 1 | 437 | 256 | 718 | 9.60e-172 | 499 |
| Msa0227280 | AT2G23980.9 | 55.437 | 469 | 171 | 8 | 1 | 437 | 283 | 745 | 4.18e-171 | 498 |
| Msa0227280 | AT2G23980.10 | 55.437 | 469 | 171 | 8 | 1 | 437 | 283 | 745 | 4.18e-171 | 498 |
| Msa0227280 | AT2G23980.1 | 55.437 | 469 | 171 | 8 | 1 | 437 | 283 | 745 | 4.18e-171 | 498 |
| Msa0227280 | AT2G23980.4 | 55.437 | 469 | 171 | 8 | 1 | 437 | 283 | 745 | 4.18e-171 | 498 |
| Msa0227280 | AT2G23980.5 | 55.437 | 469 | 171 | 8 | 1 | 437 | 283 | 745 | 4.18e-171 | 498 |
| Msa0227280 | AT5G57940.3 | 55.556 | 459 | 173 | 7 | 1 | 437 | 261 | 710 | 6.79e-169 | 491 |
| Msa0227280 | AT5G57940.1 | 55.556 | 459 | 173 | 7 | 1 | 437 | 268 | 717 | 7.15e-169 | 491 |
| Msa0227280 | AT5G57940.2 | 55.556 | 459 | 173 | 7 | 1 | 437 | 268 | 717 | 7.15e-169 | 491 |
| Msa0227280 | AT1G19780.2 | 54.352 | 471 | 171 | 9 | 3 | 434 | 68 | 533 | 5.07e-168 | 483 |
| Msa0227280 | AT1G15990.1 | 54.316 | 475 | 168 | 9 | 3 | 437 | 273 | 738 | 7.06e-167 | 487 |
| Msa0227280 | AT5G14870.1 | 50.412 | 486 | 186 | 7 | 1 | 435 | 219 | 700 | 7.58e-167 | 486 |
| Msa0227280 | AT2G23980.3 | 52.846 | 492 | 171 | 9 | 1 | 437 | 283 | 768 | 1.21e-165 | 485 |
| Msa0227280 | AT2G23980.2 | 52.846 | 492 | 171 | 9 | 1 | 437 | 283 | 768 | 1.21e-165 | 485 |
| Msa0227280 | AT2G23980.8 | 52.846 | 492 | 171 | 9 | 1 | 437 | 283 | 768 | 1.21e-165 | 485 |
| Msa0227280 | AT2G23980.7 | 52.846 | 492 | 171 | 9 | 1 | 437 | 283 | 768 | 1.21e-165 | 485 |
| Msa0227280 | AT1G19780.1 | 54.352 | 471 | 171 | 9 | 3 | 434 | 279 | 744 | 1.75e-165 | 484 |
| Msa0227280 | AT3G48010.1 | 58.586 | 396 | 141 | 4 | 1 | 377 | 225 | 616 | 7.44e-164 | 478 |
| Msa0227280 | AT5G53130.1 | 53.896 | 462 | 178 | 7 | 1 | 437 | 264 | 715 | 1.89e-158 | 465 |
| Msa0227280 | AT4G01010.1 | 52.088 | 455 | 186 | 9 | 2 | 435 | 249 | 692 | 2.38e-157 | 461 |
| Msa0227280 | AT4G01010.2 | 52.088 | 455 | 186 | 9 | 2 | 435 | 249 | 692 | 2.38e-157 | 461 |
| Msa0227280 | AT1G01340.2 | 50.531 | 471 | 181 | 10 | 2 | 435 | 249 | 704 | 3.36e-156 | 459 |
| Msa0227280 | AT1G01340.1 | 50.531 | 471 | 181 | 10 | 2 | 435 | 244 | 699 | 5.49e-156 | 458 |
| Msa0227280 | AT2G46430.1 | 51.087 | 460 | 189 | 10 | 1 | 434 | 252 | 701 | 1.98e-149 | 441 |
| Msa0227280 | AT2G46430.2 | 51.087 | 460 | 189 | 10 | 1 | 434 | 252 | 701 | 1.98e-149 | 441 |
| Msa0227280 | AT2G46440.2 | 47.170 | 424 | 197 | 9 | 1 | 405 | 28 | 443 | 2.39e-114 | 343 |
| Msa0227280 | AT2G46440.1 | 47.281 | 423 | 196 | 9 | 2 | 405 | 207 | 621 | 2.79e-112 | 343 |
| Msa0227280 | AT2G46450.2 | 40.278 | 432 | 221 | 11 | 2 | 414 | 184 | 597 | 1.24e-94 | 298 |
| Msa0227280 | AT2G46450.3 | 40.278 | 432 | 221 | 11 | 2 | 414 | 171 | 584 | 1.28e-94 | 297 |
| Msa0227280 | AT2G46450.4 | 40.278 | 432 | 221 | 11 | 2 | 414 | 207 | 620 | 3.62e-94 | 297 |
| Msa0227280 | AT2G46450.1 | 40.278 | 432 | 221 | 11 | 2 | 414 | 207 | 620 | 3.62e-94 | 297 |
| Msa0227280 | AT5G54250.2 | 37.028 | 397 | 218 | 9 | 3 | 377 | 268 | 654 | 7.62e-75 | 248 |
| Msa0227280 | AT5G54250.1 | 37.028 | 397 | 218 | 9 | 3 | 377 | 268 | 654 | 7.62e-75 | 248 |
| Msa0227280 | AT5G54250.4 | 37.028 | 397 | 218 | 9 | 3 | 377 | 268 | 654 | 7.62e-75 | 248 |
| Msa0227280 | AT5G54250.3 | 36.020 | 397 | 217 | 10 | 3 | 377 | 268 | 649 | 1.47e-69 | 233 |
| Msa0227280 | AT5G15410.2 | 33.850 | 387 | 223 | 10 | 3 | 365 | 299 | 676 | 2.62e-64 | 220 |
| Msa0227280 | AT5G15410.1 | 33.850 | 387 | 223 | 10 | 3 | 365 | 300 | 677 | 3.93e-64 | 219 |
| Msa0227280 | AT3G17690.1 | 36.020 | 397 | 210 | 15 | 1 | 371 | 338 | 716 | 1.18e-61 | 213 |
| Msa0227280 | AT3G17700.1 | 36.247 | 389 | 209 | 13 | 1 | 365 | 372 | 745 | 4.32e-60 | 209 |
| Msa0227280 | AT3G17690.2 | 35.783 | 313 | 166 | 11 | 1 | 296 | 338 | 632 | 1.55e-49 | 178 |
| Msa0227280 | AT3G17700.2 | 35.599 | 309 | 173 | 9 | 1 | 297 | 372 | 666 | 1.74e-49 | 179 |
| Msa0227280 | AT3G17690.3 | 32.105 | 190 | 101 | 8 | 1 | 173 | 338 | 516 | 7.60e-19 | 89.4 |
Find 111 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAATATAATCAATATAAA+TGG | 0.208829 | 2_1:+78074396 | Msa0227280:CDS |
| GTTTGGAGGGTGCAGTTCTT+TGG | 0.210884 | 2_1:+78073853 | Msa0227280:intron |
| AAAGGTGTTAATATGCATTC+TGG | 0.262434 | 2_1:+78075450 | Msa0227280:CDS |
| GAGAAATCAAATTGTCAATA+TGG | 0.294895 | 2_1:+78073490 | Msa0227280:CDS |
| GGAACCTGAGGCAAGTATTA+TGG | 0.296416 | 2_1:+78073701 | Msa0227280:CDS |
| CGAATAGACTCTCGTAGTTC+TGG | 0.297309 | 2_1:-78074374 | None:intergenic |
| TATTATTGCAGGTGTTGATT+TGG | 0.298468 | 2_1:+78072742 | Msa0227280:five_prime_UTR |
| TTTGGAGGGTGCAGTTCTTT+GGG | 0.302499 | 2_1:+78073854 | Msa0227280:intron |
| AAGGACTTCCGCTGGATCTT+AGG | 0.302671 | 2_1:+78074456 | Msa0227280:CDS |
| ATTGTGCAATTTGTTTGTTT+TGG | 0.304710 | 2_1:+78075560 | Msa0227280:three_prime_UTR |
| CACACTTGGTCTTGGATCTA+AGG | 0.318439 | 2_1:-78075094 | None:intergenic |
| CTAGCATTCTTTCATCCATT+TGG | 0.323336 | 2_1:-78074870 | None:intergenic |
| CTTGACGTTCTATTGATAGA+AGG | 0.346761 | 2_1:-78073438 | None:intergenic |
| ATTGTCTCTGGTGGGGATTA+AGG | 0.348176 | 2_1:+78073680 | Msa0227280:CDS |
| GCTATTGTGGTTGCAACTCT+TGG | 0.355052 | 2_1:+78073920 | Msa0227280:CDS |
| GAAATGCTCTTCATAATTAG+AGG | 0.358622 | 2_1:+78074970 | Msa0227280:CDS |
| GTTATTTATTCTATTATTGC+AGG | 0.385222 | 2_1:+78072731 | Msa0227280:five_prime_UTR |
| TTCATATATAAATTAGAGAT+AGG | 0.385858 | 2_1:+78075591 | Msa0227280:three_prime_UTR |
| CAAGGGTTGCAAGGAATACT+AGG | 0.391426 | 2_1:+78075427 | Msa0227280:CDS |
| TCACAAATTGTAAAAGCTAC+AGG | 0.394327 | 2_1:+78072878 | Msa0227280:five_prime_UTR |
| GGTTCCCTTGTTTGACCAAA+TGG | 0.396986 | 2_1:+78074855 | Msa0227280:intron |
| ATTCACACCAATGGAGAACT+TGG | 0.401526 | 2_1:+78075256 | Msa0227280:CDS |
| ATGAAGAGCATTTCGTTCAC+TGG | 0.405862 | 2_1:-78074961 | None:intergenic |
| AACGGATAAAAGCCGGCATT+TGG | 0.410069 | 2_1:-78073592 | None:intergenic |
| TATTATAATACCAACACTTA+GGG | 0.416742 | 2_1:+78072767 | Msa0227280:five_prime_UTR |
| ATAAGTACTTCTATTGTCTC+TGG | 0.417702 | 2_1:+78073668 | Msa0227280:CDS |
| CTTGATTCATACACAACAAA+TGG | 0.422331 | 2_1:+78074997 | Msa0227280:CDS |
| GGGAGTATCACACTTGGTCT+TGG | 0.424283 | 2_1:-78075102 | None:intergenic |
| TTTACAATTTGTGATGAAAG+TGG | 0.430401 | 2_1:-78072869 | None:intergenic |
| TTGGAAAAGTGTGTGCAATA+TGG | 0.436003 | 2_1:+78073468 | Msa0227280:CDS |
| TTAACTGTTCTTGTGGAAGA+AGG | 0.448046 | 2_1:-78075123 | None:intergenic |
| CTTTGTCTTGAACTAGTTCG+AGG | 0.455073 | 2_1:+78074497 | Msa0227280:CDS |
| CATGGAGAAGGCACAAGAAA+AGG | 0.459490 | 2_1:+78075301 | Msa0227280:CDS |
| GGAAAGAAGCTGCTGAATTG+AGG | 0.459874 | 2_1:+78075322 | Msa0227280:CDS |
| AAGGTGTTAATATGCATTCT+GGG | 0.461316 | 2_1:+78075451 | Msa0227280:CDS |
| TGTGGTTGCAACTCTTGGAT+TGG | 0.461815 | 2_1:+78073925 | Msa0227280:CDS |
| GAAAGAAGCTGCTGAATTGA+GGG | 0.466076 | 2_1:+78075323 | Msa0227280:CDS |
| TTATTATAATACCAACACTT+AGG | 0.470326 | 2_1:+78072766 | Msa0227280:five_prime_UTR |
| ACTATGCATGATGCACTTTG+TGG | 0.470656 | 2_1:+78075648 | Msa0227280:three_prime_UTR |
| TAAATATAATCAATATAAAT+GGG | 0.474688 | 2_1:+78074397 | Msa0227280:CDS |
| CAACCTCATGCTTTACATGT+TGG | 0.485217 | 2_1:+78072936 | Msa0227280:exon |
| TTCTTCAACTCATGTAGAAT+CGG | 0.487881 | 2_1:+78075033 | Msa0227280:CDS |
| AGAAATAATGGTTGCTATTG+TGG | 0.489273 | 2_1:+78073907 | Msa0227280:CDS |
| TTCATCCATTTGGTCAAACA+AGG | 0.490363 | 2_1:-78074860 | None:intergenic |
| TACTTCTATTGTCTCTGGTG+GGG | 0.502969 | 2_1:+78073673 | Msa0227280:CDS |
| TAGAAGTACTTATTGAAGAA+TGG | 0.503317 | 2_1:-78073658 | None:intergenic |
| GACGAACGGTTATCGATTGA+AGG | 0.504792 | 2_1:-78074289 | None:intergenic |
| GAATCTTGTGGCAGCTTCAG+AGG | 0.513529 | 2_1:+78075353 | Msa0227280:CDS |
| GCACTTTGTGGATGATGTCT+TGG | 0.518977 | 2_1:+78075660 | Msa0227280:three_prime_UTR |
| TTGTGATATACTTACATGGC+TGG | 0.519386 | 2_1:-78072959 | None:intergenic |
| AGCTGCTGAATTGAGGGCTA+AGG | 0.522860 | 2_1:+78075329 | Msa0227280:CDS |
| GTACTTCTATTGTCTCTGGT+GGG | 0.524354 | 2_1:+78073672 | Msa0227280:CDS |
| TTATTCAAGCTGCATGGAGA+AGG | 0.526489 | 2_1:+78075289 | Msa0227280:CDS |
| TAACTGTTCTTGTGGAAGAA+GGG | 0.531786 | 2_1:-78075122 | None:intergenic |
| TTAACCATAATACTTGCCTC+AGG | 0.533147 | 2_1:-78073705 | None:intergenic |
| GGGTGCAGTTCTTTGGGACA+AGG | 0.533291 | 2_1:+78073860 | Msa0227280:intron |
| AGTACTTCTATTGTCTCTGG+TGG | 0.533933 | 2_1:+78073671 | Msa0227280:CDS |
| AACTCATGTAGAATCGGTCC+AGG | 0.535190 | 2_1:+78075039 | Msa0227280:CDS |
| AATTTATGTTCACCAAATGC+CGG | 0.535721 | 2_1:+78073580 | Msa0227280:CDS |
| GAAAGCTTTAACTGTTCTTG+TGG | 0.538709 | 2_1:-78075130 | None:intergenic |
| TGATGTAACTTCGGAAGTCA+TGG | 0.553176 | 2_1:-78073632 | None:intergenic |
| TCTTCTCAAAGGACTTCCGC+TGG | 0.553705 | 2_1:+78074448 | Msa0227280:CDS |
| TATACCAAACGGATAAAAGC+CGG | 0.557769 | 2_1:-78073599 | None:intergenic |
| TTTATGGAACAAGGGTTGCA+AGG | 0.560809 | 2_1:+78075418 | Msa0227280:CDS |
| TCTTCACCACAGAAATCGCC+TGG | 0.562215 | 2_1:-78075057 | None:intergenic |
| TTCACACCAATGGAGAACTT+GGG | 0.569483 | 2_1:+78075257 | Msa0227280:CDS |
| GCATCAGCATATATACCAAA+CGG | 0.570370 | 2_1:-78073610 | None:intergenic |
| AAGCAGCCCAAGTTCTCCAT+TGG | 0.571876 | 2_1:-78075263 | None:intergenic |
| GTTCCCTCAGTGCATAATGC+AGG | 0.571915 | 2_1:-78074916 | None:intergenic |
| ACAACAAATGGAGGCCGTGA+CGG | 0.574379 | 2_1:+78075009 | Msa0227280:CDS |
| GAGGAAGAAGATCTTCTCAA+AGG | 0.575171 | 2_1:+78074437 | Msa0227280:CDS |
| TAGAACGTCAAGAAGCATGT+TGG | 0.581133 | 2_1:+78073449 | Msa0227280:CDS |
| CACAAATTGTAAAAGCTACA+GGG | 0.587593 | 2_1:+78072879 | Msa0227280:five_prime_UTR |
| GAATGGCGATGATGTAACTT+CGG | 0.588257 | 2_1:-78073641 | None:intergenic |
| GTTACAGAAACAGCATGGGC+AGG | 0.595665 | 2_1:+78072904 | Msa0227280:five_prime_UTR |
| GCTATAAACCAAGCTACTCT+CGG | 0.598310 | 2_1:-78073544 | None:intergenic |
| GGTGGCTACACGAGGAGTAG+AGG | 0.598943 | 2_1:+78074418 | Msa0227280:CDS |
| GGAACTTATCTTGTTCGCGA+AGG | 0.606182 | 2_1:+78074934 | Msa0227280:CDS |
| TTGTTGTGTATGAATCAAGA+TGG | 0.607110 | 2_1:-78074993 | None:intergenic |
| GTGGTGAAGAGCTCTTAACA+TGG | 0.607722 | 2_1:+78075070 | Msa0227280:CDS |
| GGGTTGTTACAGAAACAGCA+TGG | 0.610067 | 2_1:+78072899 | Msa0227280:five_prime_UTR |
| TAACCGTTCGTCTAGAAGAG+TGG | 0.612435 | 2_1:+78074300 | Msa0227280:CDS |
| AAGATGCTCCGAGAGTAGCT+TGG | 0.612832 | 2_1:+78073536 | Msa0227280:CDS |
| CCTCCACTCTTCTAGACGAA+CGG | 0.613285 | 2_1:-78074303 | None:intergenic |
| TCATCCATTTGGTCAAACAA+GGG | 0.614441 | 2_1:-78074859 | None:intergenic |
| GACTACATAGTAAACAACTT+AGG | 0.617133 | 2_1:+78075217 | Msa0227280:CDS |
| AAGCCTGCATTATGCACTGA+GGG | 0.618536 | 2_1:+78074913 | Msa0227280:CDS |
| ATTATAATACCAACACTTAG+GGG | 0.628546 | 2_1:+78072768 | Msa0227280:five_prime_UTR |
| CGTTCGTCTAGAAGAGTGGA+GGG | 0.630762 | 2_1:+78074304 | Msa0227280:CDS |
| AACACTTAGGGGTTCAACCA+TGG | 0.634663 | 2_1:+78072779 | Msa0227280:five_prime_UTR |
| CCGTTCGTCTAGAAGAGTGG+AGG | 0.639971 | 2_1:+78074303 | Msa0227280:CDS |
| AAAGAACTGACACAGAACAA+TGG | 0.642598 | 2_1:+78074330 | Msa0227280:CDS |
| ATAGACTCTCGTAGTTCTGG+AGG | 0.643923 | 2_1:-78074371 | None:intergenic |
| ATCGGTCCAGGCGATTTCTG+TGG | 0.645701 | 2_1:+78075051 | Msa0227280:CDS |
| GATTCATACACAACAAATGG+AGG | 0.646565 | 2_1:+78075000 | Msa0227280:CDS |
| GGTGGGGATTAAGGAACCTG+AGG | 0.650199 | 2_1:+78073689 | Msa0227280:CDS |
| ATATAATCAATATAAATGGG+TGG | 0.651864 | 2_1:+78074400 | Msa0227280:CDS |
| GAGGGCTAAGGAGAATCTTG+TGG | 0.656336 | 2_1:+78075341 | Msa0227280:CDS |
| TGGTGAAGAGCTCTTAACAT+GGG | 0.661791 | 2_1:+78075071 | Msa0227280:CDS |
| CTCGAACTAGTTCAAGACAA+AGG | 0.662676 | 2_1:-78074496 | None:intergenic |
| ATTTCTCTCCTAAGATCCAG+CGG | 0.666530 | 2_1:-78074464 | None:intergenic |
| GTTGCAAGGAATACTAGGAA+AGG | 0.669215 | 2_1:+78075432 | Msa0227280:CDS |
| ATGGTTGAACCCCTAAGTGT+TGG | 0.671733 | 2_1:-78072777 | None:intergenic |
| GAAGAAGGGAGTATCACACT+TGG | 0.672182 | 2_1:-78075108 | None:intergenic |
| GGTTGTTACAGAAACAGCAT+GGG | 0.675273 | 2_1:+78072900 | Msa0227280:five_prime_UTR |
| AGGTGTTAATATGCATTCTG+GGG | 0.675385 | 2_1:+78075452 | Msa0227280:CDS |
| TATAAATGGGTGGCTACACG+AGG | 0.677991 | 2_1:+78074410 | Msa0227280:CDS |
| ATGAGTTGAAGAATCCGTCA+CGG | 0.683468 | 2_1:-78075023 | None:intergenic |
| GAACTAGTTCAAGACAAAGG+TGG | 0.711572 | 2_1:-78074493 | None:intergenic |
| TGGCCAACATGTAAAGCATG+AGG | 0.724789 | 2_1:-78072939 | None:intergenic |
| AAAGCCTGCATTATGCACTG+AGG | 0.736004 | 2_1:+78074912 | Msa0227280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTTATAAGATATTA+TGG | - | chr2_1:78073176-78073195 | None:intergenic | 10.0% |
| !! | GTAAATATAATCAATATAAA+TGG | + | chr2_1:78074396-78074415 | Msa0227280:CDS | 10.0% |
| !!! | TTATATACTGAATAGATTTT+AGG | + | chr2_1:78073403-78073422 | Msa0227280:intron | 15.0% |
| !! | CTTATAAACAAATATAAACT+TGG | - | chr2_1:78074539-78074558 | None:intergenic | 15.0% |
| !! | CTAATTTATTAATTGTTAAC+AGG | + | chr2_1:78074834-78074853 | Msa0227280:intron | 15.0% |
| !! | AATGAAATAGCAAAAAAATA+TGG | + | chr2_1:78075381-78075400 | Msa0227280:CDS | 15.0% |
| !! | ATGAAATAGCAAAAAAATAT+GGG | + | chr2_1:78075382-78075401 | Msa0227280:CDS | 15.0% |
| !! | TTCATATATAAATTAGAGAT+AGG | + | chr2_1:78075591-78075610 | Msa0227280:three_prime_UTR | 15.0% |
| !! | GTTATTTATTCTATTATTGC+AGG | + | chr2_1:78072731-78072750 | Msa0227280:five_prime_UTR | 20.0% |
| !! | TTATTATAATACCAACACTT+AGG | + | chr2_1:78072766-78072785 | Msa0227280:five_prime_UTR | 20.0% |
| !! | TATTATAATACCAACACTTA+GGG | + | chr2_1:78072767-78072786 | Msa0227280:five_prime_UTR | 20.0% |
| !!! | TCATTTTTCAATATATTCCT+AGG | + | chr2_1:78072831-78072850 | Msa0227280:five_prime_UTR | 20.0% |
| !! | AAATATAATGTATTCACTCT+TGG | + | chr2_1:78073779-78073798 | Msa0227280:intron | 20.0% |
| !! | ATATAATCAATATAAATGGG+TGG | + | chr2_1:78074400-78074419 | Msa0227280:CDS | 20.0% |
| !! | TATTATTCATCAGAAAAATC+AGG | - | chr2_1:78075507-78075526 | None:intergenic | 20.0% |
| !!! | ATTAAACACAGTTTTTCAAA+TGG | - | chr2_1:78075627-78075646 | None:intergenic | 20.0% |
| ! | ATTATAATACCAACACTTAG+GGG | + | chr2_1:78072768-78072787 | Msa0227280:five_prime_UTR | 25.0% |
| ! | GAAAAATGATGAAAAAACGA+AGG | - | chr2_1:78072820-78072839 | None:intergenic | 25.0% |
| ! | TTTACAATTTGTGATGAAAG+TGG | - | chr2_1:78072872-78072891 | None:intergenic | 25.0% |
| ! | CATGCTACAAAATAGTAAAA+GGG | - | chr2_1:78073018-78073037 | None:intergenic | 25.0% |
| ! | AGACTATTTCAAAGAGTTTA+CGG | + | chr2_1:78073121-78073140 | Msa0227280:intron | 25.0% |
| !!! | TTAACTTGCTTATCCAAATT+TGG | + | chr2_1:78073301-78073320 | Msa0227280:intron | 25.0% |
| ! | GAGAAATCAAATTGTCAATA+TGG | + | chr2_1:78073490-78073509 | Msa0227280:CDS | 25.0% |
| !!! | TAGAAGTACTTATTGAAGAA+TGG | - | chr2_1:78073661-78073680 | None:intergenic | 25.0% |
| ! | ATAATCAACTAGATAAAGCA+AGG | - | chr2_1:78073743-78073762 | None:intergenic | 25.0% |
| ! | GCTAAAAAATGGATATAATG+AGG | + | chr2_1:78073804-78073823 | Msa0227280:intron | 25.0% |
| ! | AGTATTAATACCTTTCTGTT+TGG | + | chr2_1:78073836-78073855 | Msa0227280:intron | 25.0% |
| !! | TTTTCTCATACGATTCAATT+TGG | - | chr2_1:78074223-78074242 | None:intergenic | 25.0% |
| !! | TTCAAGTTATATTAGAGGTA+TGG | - | chr2_1:78074256-78074275 | None:intergenic | 25.0% |
| !! | CGAAATTCAAGTTATATTAG+AGG | - | chr2_1:78074261-78074280 | None:intergenic | 25.0% |
| ! | AATATATCAAAGATCGCTAT+GGG | - | chr2_1:78074576-78074595 | None:intergenic | 25.0% |
| ! | AAAAAAAGATATTCAGTCAG+AGG | - | chr2_1:78074764-78074783 | None:intergenic | 25.0% |
| ! | ATAGCAAAAAAATATGGGAA+AGG | + | chr2_1:78075387-78075406 | Msa0227280:CDS | 25.0% |
| !!! | TTTTGTTGTTTATGGAACAA+GGG | + | chr2_1:78075410-78075429 | Msa0227280:CDS | 25.0% |
| !!! | ATTGTGCAATTTGTTTGTTT+TGG | + | chr2_1:78075560-78075579 | Msa0227280:three_prime_UTR | 25.0% |
| !! | TATTATTGCAGGTGTTGATT+TGG | + | chr2_1:78072742-78072761 | Msa0227280:five_prime_UTR | 30.0% |
| TCACAAATTGTAAAAGCTAC+AGG | + | chr2_1:78072878-78072897 | Msa0227280:five_prime_UTR | 30.0% | |
| CACAAATTGTAAAAGCTACA+GGG | + | chr2_1:78072879-78072898 | Msa0227280:five_prime_UTR | 30.0% | |
| ! | TAGCTTGTGATATACTTACA+TGG | - | chr2_1:78072966-78072985 | None:intergenic | 30.0% |
| TATCACAAGCTATATTTCCT+TGG | + | chr2_1:78072974-78072993 | Msa0227280:intron | 30.0% | |
| GCATGCTACAAAATAGTAAA+AGG | - | chr2_1:78073019-78073038 | None:intergenic | 30.0% | |
| ! | TGTATTAGCTTATTCAAGCT+TGG | + | chr2_1:78073077-78073096 | Msa0227280:intron | 30.0% |
| AAGATATTATGGAGAGCTTA+TGG | - | chr2_1:78073165-78073184 | None:intergenic | 30.0% | |
| !! | ATTCTAGTTTAGGCCAAATT+TGG | - | chr2_1:78073317-78073336 | None:intergenic | 30.0% |
| AATTTATGTTCACCAAATGC+CGG | + | chr2_1:78073580-78073599 | Msa0227280:CDS | 30.0% | |
| ATAAGTACTTCTATTGTCTC+TGG | + | chr2_1:78073668-78073687 | Msa0227280:CDS | 30.0% | |
| ATTAATACCTTTCTGTTTGG+AGG | + | chr2_1:78073839-78073858 | Msa0227280:intron | 30.0% | |
| TTAATACCTTTCTGTTTGGA+GGG | + | chr2_1:78073840-78073859 | Msa0227280:intron | 30.0% | |
| ! | CTTCTTACTAGCACTTTTAT+CGG | + | chr2_1:78073884-78073903 | Msa0227280:CDS | 30.0% |
| ! | CACTTTTATCGGAGAAATAA+TGG | + | chr2_1:78073895-78073914 | Msa0227280:CDS | 30.0% |
| ! | AGAAATAATGGTTGCTATTG+TGG | + | chr2_1:78073907-78073926 | Msa0227280:CDS | 30.0% |
| ! | CGTGGTTAATTTATTTCTCT+TGG | + | chr2_1:78073985-78074004 | Msa0227280:intron | 30.0% |
| AGAGAAATCATTTCTTACGT+TGG | + | chr2_1:78074012-78074031 | Msa0227280:intron | 30.0% | |
| TTCTTACGTTGGATGAAATA+TGG | + | chr2_1:78074023-78074042 | Msa0227280:intron | 30.0% | |
| !! | ACCTTTCAAACCAGTTTTAT+AGG | + | chr2_1:78074081-78074100 | Msa0227280:intron | 30.0% |
| !! | CCTTTCAAACCAGTTTTATA+GGG | + | chr2_1:78074082-78074101 | Msa0227280:intron | 30.0% |
| CTAATTCAACCCTATAAAAC+TGG | - | chr2_1:78074094-78074113 | None:intergenic | 30.0% | |
| TCAAAAGCAGATATAAACGA+AGG | - | chr2_1:78074159-78074178 | None:intergenic | 30.0% | |
| ATATATCAAAGATCGCTATG+GGG | - | chr2_1:78074575-78074594 | None:intergenic | 30.0% | |
| GAATATATCAAAGATCGCTA+TGG | - | chr2_1:78074577-78074596 | None:intergenic | 30.0% | |
| GAATTTGACTGTGATTTCTA+TGG | - | chr2_1:78074599-78074618 | None:intergenic | 30.0% | |
| GAAATGCTCTTCATAATTAG+AGG | + | chr2_1:78074970-78074989 | Msa0227280:CDS | 30.0% | |
| TTGTTGTGTATGAATCAAGA+TGG | - | chr2_1:78074996-78075015 | None:intergenic | 30.0% | |
| CTTGATTCATACACAACAAA+TGG | + | chr2_1:78074997-78075016 | Msa0227280:CDS | 30.0% | |
| TTCTTCAACTCATGTAGAAT+CGG | + | chr2_1:78075033-78075052 | Msa0227280:CDS | 30.0% | |
| GACTACATAGTAAACAACTT+AGG | + | chr2_1:78075217-78075236 | Msa0227280:CDS | 30.0% | |
| ! | TCAGATTTTATTCACACCAA+TGG | + | chr2_1:78075247-78075266 | Msa0227280:CDS | 30.0% |
| !!! | GTTTTGTTGTTTATGGAACA+AGG | + | chr2_1:78075409-78075428 | Msa0227280:CDS | 30.0% |
| !! | AAAGGTGTTAATATGCATTC+TGG | + | chr2_1:78075450-78075469 | Msa0227280:CDS | 30.0% |
| ! | AAGGTGTTAATATGCATTCT+GGG | + | chr2_1:78075451-78075470 | Msa0227280:CDS | 30.0% |
| GGAAAAATCAAATACAGCCT+AGG | - | chr2_1:78072851-78072870 | None:intergenic | 35.0% | |
| TTGTGATATACTTACATGGC+TGG | - | chr2_1:78072962-78072981 | None:intergenic | 35.0% | |
| ! | CCAATTTGTTTGAACAACCA+AGG | - | chr2_1:78072994-78073013 | None:intergenic | 35.0% |
| CCTTGGTTGTTCAAACAAAT+TGG | + | chr2_1:78072991-78073010 | Msa0227280:intron | 35.0% | |
| ATTTGGCCTAAACTAGAATG+TGG | + | chr2_1:78073318-78073337 | Msa0227280:intron | 35.0% | |
| !! | CTCATTCCACATTCTAGTTT+AGG | - | chr2_1:78073327-78073346 | None:intergenic | 35.0% |
| !! | AATAGATTTTAGGAGCTTGC+TGG | + | chr2_1:78073413-78073432 | Msa0227280:intron | 35.0% |
| CTTGACGTTCTATTGATAGA+AGG | - | chr2_1:78073441-78073460 | None:intergenic | 35.0% | |
| ! | TTGGAAAAGTGTGTGCAATA+TGG | + | chr2_1:78073468-78073487 | Msa0227280:CDS | 35.0% |
| TATACCAAACGGATAAAAGC+CGG | - | chr2_1:78073602-78073621 | None:intergenic | 35.0% | |
| GCATCAGCATATATACCAAA+CGG | - | chr2_1:78073613-78073632 | None:intergenic | 35.0% | |
| TTAACCATAATACTTGCCTC+AGG | - | chr2_1:78073708-78073727 | None:intergenic | 35.0% | |
| CACTCTTGGAAGCTAAAAAA+TGG | + | chr2_1:78073793-78073812 | Msa0227280:intron | 35.0% | |
| ! | ATTGCTGATTGGTAATATGC+AGG | + | chr2_1:78073958-78073977 | Msa0227280:intron | 35.0% |
| !! | CCCTATAAAACTGGTTTGAA+AGG | - | chr2_1:78074085-78074104 | None:intergenic | 35.0% |
| ! | GGGTTGAATTAGTTTGAAGA+TGG | + | chr2_1:78074102-78074121 | Msa0227280:intron | 35.0% |
| AAAGAACTGACACAGAACAA+TGG | + | chr2_1:78074330-78074349 | Msa0227280:CDS | 35.0% | |
| TCATCCATTTGGTCAAACAA+GGG | - | chr2_1:78074862-78074881 | None:intergenic | 35.0% | |
| TTCATCCATTTGGTCAAACA+AGG | - | chr2_1:78074863-78074882 | None:intergenic | 35.0% | |
| CTAGCATTCTTTCATCCATT+TGG | - | chr2_1:78074873-78074892 | None:intergenic | 35.0% | |
| GATTCATACACAACAAATGG+AGG | + | chr2_1:78075000-78075019 | Msa0227280:CDS | 35.0% | |
| TAACTGTTCTTGTGGAAGAA+GGG | - | chr2_1:78075125-78075144 | None:intergenic | 35.0% | |
| TTAACTGTTCTTGTGGAAGA+AGG | - | chr2_1:78075126-78075145 | None:intergenic | 35.0% | |
| ! | GAAAGCTTTAACTGTTCTTG+TGG | - | chr2_1:78075133-78075152 | None:intergenic | 35.0% |
| !!! | CTTGTTTTATTCAAGCTGCA+TGG | + | chr2_1:78075283-78075302 | Msa0227280:CDS | 35.0% |
| !!! | GGGAAAGGTTTTGTTGTTTA+TGG | + | chr2_1:78075402-78075421 | Msa0227280:CDS | 35.0% |
| AGGTGTTAATATGCATTCTG+GGG | + | chr2_1:78075452-78075471 | Msa0227280:CDS | 35.0% | |
| TCAGAAAAATCAGGTTCTGT+TGG | - | chr2_1:78075498-78075517 | None:intergenic | 35.0% | |
| ! | GGACATTTTCGTATTTGCCA+TGG | - | chr2_1:78072799-78072818 | None:intergenic | 40.0% |
| GGTTGTTACAGAAACAGCAT+GGG | + | chr2_1:78072900-78072919 | Msa0227280:five_prime_UTR | 40.0% | |
| CAACCTCATGCTTTACATGT+TGG | + | chr2_1:78072936-78072955 | Msa0227280:exon | 40.0% | |
| ! | TAGAACGTCAAGAAGCATGT+TGG | + | chr2_1:78073449-78073468 | Msa0227280:CDS | 40.0% |
| GCTATAAACCAAGCTACTCT+CGG | - | chr2_1:78073547-78073566 | None:intergenic | 40.0% | |
| TGATGTAACTTCGGAAGTCA+TGG | - | chr2_1:78073635-78073654 | None:intergenic | 40.0% | |
| GAATGGCGATGATGTAACTT+CGG | - | chr2_1:78073644-78073663 | None:intergenic | 40.0% | |
| AGTACTTCTATTGTCTCTGG+TGG | + | chr2_1:78073671-78073690 | Msa0227280:CDS | 40.0% | |
| GTACTTCTATTGTCTCTGGT+GGG | + | chr2_1:78073672-78073691 | Msa0227280:CDS | 40.0% | |
| TACTTCTATTGTCTCTGGTG+GGG | + | chr2_1:78073673-78073692 | Msa0227280:CDS | 40.0% | |
| ! | GTACTTTTCGCATTGCTGAT+TGG | + | chr2_1:78073947-78073966 | Msa0227280:intron | 40.0% |
| CGAAGGATGTATGTGTTTCA+CGG | - | chr2_1:78074142-78074161 | None:intergenic | 40.0% | |
| GAGGAAGAAGATCTTCTCAA+AGG | + | chr2_1:78074437-78074456 | Msa0227280:CDS | 40.0% | |
| ATTTCTCTCCTAAGATCCAG+CGG | - | chr2_1:78074467-78074486 | None:intergenic | 40.0% | |
| GAACTAGTTCAAGACAAAGG+TGG | - | chr2_1:78074496-78074515 | None:intergenic | 40.0% | |
| CTCGAACTAGTTCAAGACAA+AGG | - | chr2_1:78074499-78074518 | None:intergenic | 40.0% | |
| CTTTGTCTTGAACTAGTTCG+AGG | + | chr2_1:78074497-78074516 | Msa0227280:CDS | 40.0% | |
| TGATCTGGATCACAACATCA+AGG | - | chr2_1:78074663-78074682 | None:intergenic | 40.0% | |
| AAAGATCTGCGACTATGATC+TGG | - | chr2_1:78074678-78074697 | None:intergenic | 40.0% | |
| !! | ATGAAGAGCATTTCGTTCAC+TGG | - | chr2_1:78074964-78074983 | None:intergenic | 40.0% |
| ! | ATGAGTTGAAGAATCCGTCA+CGG | - | chr2_1:78075026-78075045 | None:intergenic | 40.0% |
| TGGTGAAGAGCTCTTAACAT+GGG | + | chr2_1:78075071-78075090 | Msa0227280:CDS | 40.0% | |
| ATTCACACCAATGGAGAACT+TGG | + | chr2_1:78075256-78075275 | Msa0227280:CDS | 40.0% | |
| TTCACACCAATGGAGAACTT+GGG | + | chr2_1:78075257-78075276 | Msa0227280:CDS | 40.0% | |
| TTATTCAAGCTGCATGGAGA+AGG | + | chr2_1:78075289-78075308 | Msa0227280:CDS | 40.0% | |
| GAAAGAAGCTGCTGAATTGA+GGG | + | chr2_1:78075323-78075342 | Msa0227280:CDS | 40.0% | |
| TTTATGGAACAAGGGTTGCA+AGG | + | chr2_1:78075418-78075437 | Msa0227280:CDS | 40.0% | |
| GTTGCAAGGAATACTAGGAA+AGG | + | chr2_1:78075432-78075451 | Msa0227280:CDS | 40.0% | |
| ACTATGCATGATGCACTTTG+TGG | + | chr2_1:78075648-78075667 | Msa0227280:three_prime_UTR | 40.0% | |
| ATGGTTGAACCCCTAAGTGT+TGG | - | chr2_1:78072780-78072799 | None:intergenic | 45.0% | |
| AACACTTAGGGGTTCAACCA+TGG | + | chr2_1:78072779-78072798 | Msa0227280:five_prime_UTR | 45.0% | |
| GGGTTGTTACAGAAACAGCA+TGG | + | chr2_1:78072899-78072918 | Msa0227280:five_prime_UTR | 45.0% | |
| TGGCCAACATGTAAAGCATG+AGG | - | chr2_1:78072942-78072961 | None:intergenic | 45.0% | |
| AACGGATAAAAGCCGGCATT+TGG | - | chr2_1:78073595-78073614 | None:intergenic | 45.0% | |
| !!! | AATGCCGGCTTTTATCCGTT+TGG | + | chr2_1:78073595-78073614 | Msa0227280:CDS | 45.0% |
| ATTGTCTCTGGTGGGGATTA+AGG | + | chr2_1:78073680-78073699 | Msa0227280:CDS | 45.0% | |
| GGAACCTGAGGCAAGTATTA+TGG | + | chr2_1:78073701-78073720 | Msa0227280:CDS | 45.0% | |
| ! | TTTGGAGGGTGCAGTTCTTT+GGG | + | chr2_1:78073854-78073873 | Msa0227280:intron | 45.0% |
| GCTATTGTGGTTGCAACTCT+TGG | + | chr2_1:78073920-78073939 | Msa0227280:CDS | 45.0% | |
| TGTGGTTGCAACTCTTGGAT+TGG | + | chr2_1:78073925-78073944 | Msa0227280:CDS | 45.0% | |
| TGGTAATATGCAGGTAAGCG+TGG | + | chr2_1:78073967-78073986 | Msa0227280:intron | 45.0% | |
| ! | GACGAACGGTTATCGATTGA+AGG | - | chr2_1:78074292-78074311 | None:intergenic | 45.0% |
| TAACCGTTCGTCTAGAAGAG+TGG | + | chr2_1:78074300-78074319 | Msa0227280:CDS | 45.0% | |
| !! | ATAGACTCTCGTAGTTCTGG+AGG | - | chr2_1:78074374-78074393 | None:intergenic | 45.0% |
| CGAATAGACTCTCGTAGTTC+TGG | - | chr2_1:78074377-78074396 | None:intergenic | 45.0% | |
| TATAAATGGGTGGCTACACG+AGG | + | chr2_1:78074410-78074429 | Msa0227280:CDS | 45.0% | |
| ! | GGTTCCCTTGTTTGACCAAA+TGG | + | chr2_1:78074855-78074874 | Msa0227280:intron | 45.0% |
| AAAGCCTGCATTATGCACTG+AGG | + | chr2_1:78074912-78074931 | Msa0227280:CDS | 45.0% | |
| AAGCCTGCATTATGCACTGA+GGG | + | chr2_1:78074913-78074932 | Msa0227280:CDS | 45.0% | |
| GGAACTTATCTTGTTCGCGA+AGG | + | chr2_1:78074934-78074953 | Msa0227280:CDS | 45.0% | |
| AACTCATGTAGAATCGGTCC+AGG | + | chr2_1:78075039-78075058 | Msa0227280:CDS | 45.0% | |
| GTGGTGAAGAGCTCTTAACA+TGG | + | chr2_1:78075070-78075089 | Msa0227280:CDS | 45.0% | |
| !! | CACACTTGGTCTTGGATCTA+AGG | - | chr2_1:78075097-78075116 | None:intergenic | 45.0% |
| !! | GAAGAAGGGAGTATCACACT+TGG | - | chr2_1:78075111-78075130 | None:intergenic | 45.0% |
| ! | CATGGAGAAGGCACAAGAAA+AGG | + | chr2_1:78075301-78075320 | Msa0227280:CDS | 45.0% |
| GGAAAGAAGCTGCTGAATTG+AGG | + | chr2_1:78075322-78075341 | Msa0227280:CDS | 45.0% | |
| CAAGGGTTGCAAGGAATACT+AGG | + | chr2_1:78075427-78075446 | Msa0227280:CDS | 45.0% | |
| !! | TAAATATAATCAATATAAAT+GGG | + | chr2_1:78074397-78074416 | Msa0227280:CDS | 5.0% |
| GTTACAGAAACAGCATGGGC+AGG | + | chr2_1:78072904-78072923 | Msa0227280:five_prime_UTR | 50.0% | |
| AAGATGCTCCGAGAGTAGCT+TGG | + | chr2_1:78073536-78073555 | Msa0227280:CDS | 50.0% | |
| ACTGCACCCTCCAAACAGAA+AGG | - | chr2_1:78073849-78073868 | None:intergenic | 50.0% | |
| ! | GTTTGGAGGGTGCAGTTCTT+TGG | + | chr2_1:78073853-78073872 | Msa0227280:intron | 50.0% |
| CCTCCACTCTTCTAGACGAA+CGG | - | chr2_1:78074306-78074325 | None:intergenic | 50.0% | |
| CGTTCGTCTAGAAGAGTGGA+GGG | + | chr2_1:78074304-78074323 | Msa0227280:CDS | 50.0% | |
| TCTTCTCAAAGGACTTCCGC+TGG | + | chr2_1:78074448-78074467 | Msa0227280:CDS | 50.0% | |
| AAGGACTTCCGCTGGATCTT+AGG | + | chr2_1:78074456-78074475 | Msa0227280:CDS | 50.0% | |
| AGCTGAAGCAGCCACAATCA+CGG | + | chr2_1:78074619-78074638 | Msa0227280:intron | 50.0% | |
| TGTCTCCACAACCGTGATTG+TGG | - | chr2_1:78074633-78074652 | None:intergenic | 50.0% | |
| GTTCCCTCAGTGCATAATGC+AGG | - | chr2_1:78074919-78074938 | None:intergenic | 50.0% | |
| ACAACAAATGGAGGCCGTGA+CGG | + | chr2_1:78075009-78075028 | Msa0227280:CDS | 50.0% | |
| TCTTCACCACAGAAATCGCC+TGG | - | chr2_1:78075060-78075079 | None:intergenic | 50.0% | |
| !! | GGGAGTATCACACTTGGTCT+TGG | - | chr2_1:78075105-78075124 | None:intergenic | 50.0% |
| AAGCAGCCCAAGTTCTCCAT+TGG | - | chr2_1:78075266-78075285 | None:intergenic | 50.0% | |
| AGCTGCTGAATTGAGGGCTA+AGG | + | chr2_1:78075329-78075348 | Msa0227280:CDS | 50.0% | |
| GAGGGCTAAGGAGAATCTTG+TGG | + | chr2_1:78075341-78075360 | Msa0227280:CDS | 50.0% | |
| GAATCTTGTGGCAGCTTCAG+AGG | + | chr2_1:78075353-78075372 | Msa0227280:CDS | 50.0% | |
| GGTGGGGATTAAGGAACCTG+AGG | + | chr2_1:78073689-78073708 | Msa0227280:CDS | 55.0% | |
| !! | GGGTGCAGTTCTTTGGGACA+AGG | + | chr2_1:78073860-78073879 | Msa0227280:intron | 55.0% |
| CCGTTCGTCTAGAAGAGTGG+AGG | + | chr2_1:78074303-78074322 | Msa0227280:CDS | 55.0% | |
| AGCAGCCACAATCACGGTTG+TGG | + | chr2_1:78074625-78074644 | Msa0227280:intron | 55.0% | |
| ATCGGTCCAGGCGATTTCTG+TGG | + | chr2_1:78075051-78075070 | Msa0227280:CDS | 55.0% | |
| GGTGGCTACACGAGGAGTAG+AGG | + | chr2_1:78074418-78074437 | Msa0227280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78072719 | 78075680 | 78072719 | ID=Msa0227280;Name=Msa0227280 |
| chr2_1 | mRNA | 78072719 | 78075680 | 78072719 | ID=Msa0227280-mRNA-1;Parent=Msa0227280;Name=Msa0227280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=224|0.5|0.6|1|1|0.8|5|156|437 |
| chr2_1 | exon | 78072719 | 78072966 | 78072719 | ID=Msa0227280-mRNA-1:exon:23767;Parent=Msa0227280-mRNA-1 |
| chr2_1 | exon | 78073418 | 78073722 | 78073418 | ID=Msa0227280-mRNA-1:exon:23768;Parent=Msa0227280-mRNA-1 |
| chr2_1 | exon | 78073868 | 78073946 | 78073868 | ID=Msa0227280-mRNA-1:exon:23769;Parent=Msa0227280-mRNA-1 |
| chr2_1 | exon | 78074284 | 78074520 | 78074284 | ID=Msa0227280-mRNA-1:exon:23770;Parent=Msa0227280-mRNA-1 |
| chr2_1 | exon | 78074856 | 78075680 | 78074856 | ID=Msa0227280-mRNA-1:exon:23771;Parent=Msa0227280-mRNA-1 |
| chr2_1 | five_prime_UTR | 78072719 | 78072942 | 78072719 | ID=Msa0227280-mRNA-1:five_prime_utr;Parent=Msa0227280-mRNA-1 |
| chr2_1 | CDS | 78072943 | 78072966 | 78072943 | ID=Msa0227280-mRNA-1:cds;Parent=Msa0227280-mRNA-1 |
| chr2_1 | CDS | 78073418 | 78073722 | 78073418 | ID=Msa0227280-mRNA-1:cds;Parent=Msa0227280-mRNA-1 |
| chr2_1 | CDS | 78073868 | 78073946 | 78073868 | ID=Msa0227280-mRNA-1:cds;Parent=Msa0227280-mRNA-1 |
| chr2_1 | CDS | 78074284 | 78074520 | 78074284 | ID=Msa0227280-mRNA-1:cds;Parent=Msa0227280-mRNA-1 |
| chr2_1 | CDS | 78074856 | 78075524 | 78074856 | ID=Msa0227280-mRNA-1:cds;Parent=Msa0227280-mRNA-1 |
| chr2_1 | three_prime_UTR | 78075525 | 78075680 | 78075525 | ID=Msa0227280-mRNA-1:three_prime_utr;Parent=Msa0227280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
