Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0230140 | AES73668.1 | 96.732 | 153 | 2 | 2 | 1 | 153 | 1 | 150 | 3.65e-103 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0230140 | sp|Q9ZV52|EGC2_ARATH | 37.879 | 132 | 68 | 5 | 23 | 151 | 7 | 127 | 1.75e-18 | 79.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0230140 | G7JB40 | 96.732 | 153 | 2 | 2 | 1 | 153 | 1 | 150 | 1.75e-103 | 301 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0059880 | Msa0230140 | 0.814731 | 1.326881e-51 | -8.615850e-47 |
Msa0143710 | Msa0230140 | 0.803609 | 3.212476e-49 | -8.615850e-47 |
Msa0230140 | Msa0382610 | 0.972814 | 2.197172e-135 | -8.615850e-47 |
Msa0230140 | Msa0480400 | 0.932774 | 5.132669e-95 | -8.615850e-47 |
Msa0230140 | Msa0524900 | 0.809583 | 1.761352e-50 | -8.615850e-47 |
Msa0230140 | Msa0524930 | 0.871929 | 4.696472e-67 | -8.615850e-47 |
Msa0230140 | Msa0933580 | 0.801319 | 9.525381e-49 | -8.615850e-47 |
Msa0230140 | Msa1109890 | 0.802331 | 5.901878e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0230140 | MtrunA17_Chr3g0137931 | 96.732 | 153 | 2 | 2 | 1 | 153 | 1 | 150 | 3.36e-107 | 301 |
Msa0230140 | MtrunA17_Chr6g0477991 | 93.750 | 96 | 6 | 0 | 58 | 153 | 7 | 102 | 5.64e-65 | 193 |
Msa0230140 | MtrunA17_Chr6g0476161 | 87.879 | 66 | 8 | 0 | 76 | 141 | 10 | 75 | 1.65e-38 | 127 |
Msa0230140 | MtrunA17_Chr3g0138201 | 61.538 | 52 | 20 | 0 | 43 | 94 | 28 | 79 | 4.12e-19 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0230140 | AT2G18660.1 | 37.879 | 132 | 68 | 5 | 23 | 151 | 7 | 127 | 1.78e-19 | 79.3 |
Msa0230140 | AT4G30380.1 | 33.333 | 132 | 68 | 6 | 27 | 152 | 5 | 122 | 4.97e-11 | 57.0 |
Find 31 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGGTACTGCTTCTTCTTA+TGG | 0.173763 | 2_2:+1987499 | Msa0230140:CDS |
CAACATTGATATTTGCATTA+GGG | 0.294856 | 2_2:-1988298 | None:intergenic |
TGCTCATTTGTTTGAGCAAT+AGG | 0.304172 | 2_2:-1987462 | None:intergenic |
TCAACATTGATATTTGCATT+AGG | 0.306005 | 2_2:-1988299 | None:intergenic |
ACTGCCACAAATATATTTCC+TGG | 0.404012 | 2_2:-1988080 | None:intergenic |
CTACAGCTTGTGATGGGAAT+AGG | 0.406360 | 2_2:+1988042 | Msa0230140:CDS |
TGGGTGTACTCACGTATATA+TGG | 0.432788 | 2_2:-1987526 | None:intergenic |
AATGAAGGGTTGTGGGATAA+TGG | 0.441192 | 2_2:+1988104 | Msa0230140:CDS |
AGCATTATTCTTGCAGATGT+TGG | 0.481138 | 2_2:+1987481 | Msa0230140:CDS |
TGGCAGTGAATGAAGGGTTG+TGG | 0.485625 | 2_2:+1988096 | Msa0230140:CDS |
ATATTTGTGGCAGTGAATGA+AGG | 0.490865 | 2_2:+1988089 | Msa0230140:CDS |
TACAGAGTAAGGTGTGTAAG+TGG | 0.500626 | 2_2:+1988146 | Msa0230140:CDS |
GGCAGTGAATGAAGGGTTGT+GGG | 0.502397 | 2_2:+1988097 | Msa0230140:CDS |
ATCAATAAGCCATGCAAAGG+TGG | 0.523686 | 2_2:+1988170 | Msa0230140:CDS |
TCCACCAGGAAATATATTTG+TGG | 0.549161 | 2_2:+1988076 | Msa0230140:CDS |
AGTTGACATGTGGAAAGTGT+GGG | 0.573051 | 2_2:-1988249 | None:intergenic |
CAGTTGACATGTGGAAAGTG+TGG | 0.576339 | 2_2:-1988250 | None:intergenic |
ATACTACTACCACCTTTGCA+TGG | 0.578652 | 2_2:-1988179 | None:intergenic |
GTGGAAGGAGATACAGAGTA+AGG | 0.582766 | 2_2:+1988135 | Msa0230140:CDS |
TGGGATAATGGTGCAGCATG+TGG | 0.603337 | 2_2:+1988116 | Msa0230140:CDS |
GGAATCAATAAGCCATGCAA+AGG | 0.623535 | 2_2:+1988167 | Msa0230140:CDS |
TATTTGTGGCAGTGAATGAA+GGG | 0.626127 | 2_2:+1988090 | Msa0230140:CDS |
TGTGCAGCTACAGCTTGTGA+TGG | 0.627923 | 2_2:+1988035 | Msa0230140:intron |
GTGCAGCTACAGCTTGTGAT+GGG | 0.628864 | 2_2:+1988036 | Msa0230140:intron |
GCCACAAATATATTTCCTGG+TGG | 0.638508 | 2_2:-1988077 | None:intergenic |
CAAATGCTTCAGTTGACATG+TGG | 0.644023 | 2_2:-1988259 | None:intergenic |
ATAATGGTGCAGCATGTGGA+AGG | 0.648736 | 2_2:+1988120 | Msa0230140:CDS |
AGGAGACAACAGTTTCCACC+AGG | 0.667613 | 2_2:+1988062 | Msa0230140:CDS |
GTGTACTCACGTATATATGG+AGG | 0.706847 | 2_2:-1987523 | None:intergenic |
TTGACATGTGGAAAGTGTGG+GGG | 0.720155 | 2_2:-1988247 | None:intergenic |
GTTGACATGTGGAAAGTGTG+GGG | 0.728941 | 2_2:-1988248 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAATATTGAATGAATAAA+TGG | - | chr2_2:1987552-1987571 | None:intergenic | 15.0% |
!! | AGAAATATTGAATGAATAAA+TGG | - | chr2_2:1987552-1987571 | None:intergenic | 15.0% |
!! | ATATTGAATGAATAAATGGT+GGG | - | chr2_2:1987548-1987567 | None:intergenic | 20.0% |
!! | AATATTGAATGAATAAATGG+TGG | - | chr2_2:1987549-1987568 | None:intergenic | 20.0% |
!! | TATTTAACGTGGAAAAAAAA+TGG | - | chr2_2:1987610-1987629 | None:intergenic | 20.0% |
!!! | GTTCCAAACATTTTAAAAAT+GGG | - | chr2_2:1987861-1987880 | None:intergenic | 20.0% |
!! | ATTAATATGTGAAATTTGTG+TGG | - | chr2_2:1987883-1987902 | None:intergenic | 20.0% |
!! | ATATTGAATGAATAAATGGT+GGG | - | chr2_2:1987548-1987567 | None:intergenic | 20.0% |
!! | AATATTGAATGAATAAATGG+TGG | - | chr2_2:1987549-1987568 | None:intergenic | 20.0% |
!! | TATTTAACGTGGAAAAAAAA+TGG | - | chr2_2:1987610-1987629 | None:intergenic | 20.0% |
!!! | GTTCCAAACATTTTAAAAAT+GGG | - | chr2_2:1987861-1987880 | None:intergenic | 20.0% |
!! | ATTAATATGTGAAATTTGTG+TGG | - | chr2_2:1987883-1987902 | None:intergenic | 20.0% |
!!! | AACTATGATTTTTTGCTTGA+TGG | - | chr2_2:1987375-1987394 | None:intergenic | 25.0% |
! | TAGCTCAAAAACAAATAATG+AGG | + | chr2_2:1987410-1987429 | Msa0230140:CDS | 25.0% |
! | ATGATATATCATGTATACGT+AGG | - | chr2_2:1987579-1987598 | None:intergenic | 25.0% |
! | AGTGTTAAACTAAATGTTGA+TGG | - | chr2_2:1987793-1987812 | None:intergenic | 25.0% |
!!! | AGTCCCATTTTTAAAATGTT+TGG | + | chr2_2:1987855-1987874 | Msa0230140:intron | 25.0% |
!!! | GGTTCCAAACATTTTAAAAA+TGG | - | chr2_2:1987862-1987881 | None:intergenic | 25.0% |
! | CAACATTGATATTTGCATTA+GGG | - | chr2_2:1988301-1988320 | None:intergenic | 25.0% |
! | TCAACATTGATATTTGCATT+AGG | - | chr2_2:1988302-1988321 | None:intergenic | 25.0% |
!!! | AACTATGATTTTTTGCTTGA+TGG | - | chr2_2:1987375-1987394 | None:intergenic | 25.0% |
! | TAGCTCAAAAACAAATAATG+AGG | + | chr2_2:1987410-1987429 | Msa0230140:CDS | 25.0% |
! | ATGATATATCATGTATACGT+AGG | - | chr2_2:1987579-1987598 | None:intergenic | 25.0% |
! | AGTGTTAAACTAAATGTTGA+TGG | - | chr2_2:1987793-1987812 | None:intergenic | 25.0% |
!!! | AGTCCCATTTTTAAAATGTT+TGG | + | chr2_2:1987855-1987874 | Msa0230140:intron | 25.0% |
!!! | GGTTCCAAACATTTTAAAAA+TGG | - | chr2_2:1987862-1987881 | None:intergenic | 25.0% |
! | CAACATTGATATTTGCATTA+GGG | - | chr2_2:1988301-1988320 | None:intergenic | 25.0% |
! | TCAACATTGATATTTGCATT+AGG | - | chr2_2:1988302-1988321 | None:intergenic | 25.0% |
!! | AAAGAGATTAGTCTCCTATA+AGG | - | chr2_2:1987663-1987682 | None:intergenic | 30.0% |
AACCAATCGGTATCATTATA+GGG | - | chr2_2:1987692-1987711 | None:intergenic | 30.0% | |
!! | AAAGAGATTAGTCTCCTATA+AGG | - | chr2_2:1987663-1987682 | None:intergenic | 30.0% |
AACCAATCGGTATCATTATA+GGG | - | chr2_2:1987692-1987711 | None:intergenic | 30.0% | |
TGCTCATTTGTTTGAGCAAT+AGG | - | chr2_2:1987465-1987484 | None:intergenic | 35.0% | |
AGCATTATTCTTGCAGATGT+TGG | + | chr2_2:1987481-1987500 | Msa0230140:CDS | 35.0% | |
!! | AGAGGTGTTGATATTTAACG+TGG | - | chr2_2:1987621-1987640 | None:intergenic | 35.0% |
AGTTTAGTGCATCACCTTAT+AGG | + | chr2_2:1987646-1987665 | Msa0230140:intron | 35.0% | |
ACCAATCGGTATCATTATAG+GGG | - | chr2_2:1987691-1987710 | None:intergenic | 35.0% | |
CAACCAATCGGTATCATTAT+AGG | - | chr2_2:1987693-1987712 | None:intergenic | 35.0% | |
! | CTATAATGATACCGATTGGT+TGG | + | chr2_2:1987691-1987710 | Msa0230140:intron | 35.0% |
TCCACCAGGAAATATATTTG+TGG | + | chr2_2:1988076-1988095 | Msa0230140:CDS | 35.0% | |
ACTGCCACAAATATATTTCC+TGG | - | chr2_2:1988083-1988102 | None:intergenic | 35.0% | |
ATATTTGTGGCAGTGAATGA+AGG | + | chr2_2:1988089-1988108 | Msa0230140:CDS | 35.0% | |
TATTTGTGGCAGTGAATGAA+GGG | + | chr2_2:1988090-1988109 | Msa0230140:CDS | 35.0% | |
TGCTCATTTGTTTGAGCAAT+AGG | - | chr2_2:1987465-1987484 | None:intergenic | 35.0% | |
AGCATTATTCTTGCAGATGT+TGG | + | chr2_2:1987481-1987500 | Msa0230140:CDS | 35.0% | |
!! | AGAGGTGTTGATATTTAACG+TGG | - | chr2_2:1987621-1987640 | None:intergenic | 35.0% |
AGTTTAGTGCATCACCTTAT+AGG | + | chr2_2:1987646-1987665 | Msa0230140:intron | 35.0% | |
ACCAATCGGTATCATTATAG+GGG | - | chr2_2:1987691-1987710 | None:intergenic | 35.0% | |
CAACCAATCGGTATCATTAT+AGG | - | chr2_2:1987693-1987712 | None:intergenic | 35.0% | |
! | CTATAATGATACCGATTGGT+TGG | + | chr2_2:1987691-1987710 | Msa0230140:intron | 35.0% |
TCCACCAGGAAATATATTTG+TGG | + | chr2_2:1988076-1988095 | Msa0230140:CDS | 35.0% | |
ACTGCCACAAATATATTTCC+TGG | - | chr2_2:1988083-1988102 | None:intergenic | 35.0% | |
ATATTTGTGGCAGTGAATGA+AGG | + | chr2_2:1988089-1988108 | Msa0230140:CDS | 35.0% | |
TATTTGTGGCAGTGAATGAA+GGG | + | chr2_2:1988090-1988109 | Msa0230140:CDS | 35.0% | |
GTTGGTACTGCTTCTTCTTA+TGG | + | chr2_2:1987499-1987518 | Msa0230140:CDS | 40.0% | |
GTGTACTCACGTATATATGG+AGG | - | chr2_2:1987526-1987545 | None:intergenic | 40.0% | |
TGGGTGTACTCACGTATATA+TGG | - | chr2_2:1987529-1987548 | None:intergenic | 40.0% | |
GATGCACTAAACTACAAGAG+AGG | - | chr2_2:1987639-1987658 | None:intergenic | 40.0% | |
ACCCCTATAATGATACCGAT+TGG | + | chr2_2:1987687-1987706 | Msa0230140:intron | 40.0% | |
! | TAATGATACCGATTGGTTGG+AGG | + | chr2_2:1987694-1987713 | Msa0230140:intron | 40.0% |
! | TTTTACCACCTCCAACCAAT+CGG | - | chr2_2:1987705-1987724 | None:intergenic | 40.0% |
GCCACAAATATATTTCCTGG+TGG | - | chr2_2:1988080-1988099 | None:intergenic | 40.0% | |
AATGAAGGGTTGTGGGATAA+TGG | + | chr2_2:1988104-1988123 | Msa0230140:CDS | 40.0% | |
TACAGAGTAAGGTGTGTAAG+TGG | + | chr2_2:1988146-1988165 | Msa0230140:CDS | 40.0% | |
GGAATCAATAAGCCATGCAA+AGG | + | chr2_2:1988167-1988186 | Msa0230140:CDS | 40.0% | |
ATCAATAAGCCATGCAAAGG+TGG | + | chr2_2:1988170-1988189 | Msa0230140:CDS | 40.0% | |
ATACTACTACCACCTTTGCA+TGG | - | chr2_2:1988182-1988201 | None:intergenic | 40.0% | |
! | AGTTGACATGTGGAAAGTGT+GGG | - | chr2_2:1988252-1988271 | None:intergenic | 40.0% |
CAAATGCTTCAGTTGACATG+TGG | - | chr2_2:1988262-1988281 | None:intergenic | 40.0% | |
GTTGGTACTGCTTCTTCTTA+TGG | + | chr2_2:1987499-1987518 | Msa0230140:CDS | 40.0% | |
GTGTACTCACGTATATATGG+AGG | - | chr2_2:1987526-1987545 | None:intergenic | 40.0% | |
TGGGTGTACTCACGTATATA+TGG | - | chr2_2:1987529-1987548 | None:intergenic | 40.0% | |
GATGCACTAAACTACAAGAG+AGG | - | chr2_2:1987639-1987658 | None:intergenic | 40.0% | |
ACCCCTATAATGATACCGAT+TGG | + | chr2_2:1987687-1987706 | Msa0230140:intron | 40.0% | |
! | TAATGATACCGATTGGTTGG+AGG | + | chr2_2:1987694-1987713 | Msa0230140:intron | 40.0% |
! | TTTTACCACCTCCAACCAAT+CGG | - | chr2_2:1987705-1987724 | None:intergenic | 40.0% |
GCCACAAATATATTTCCTGG+TGG | - | chr2_2:1988080-1988099 | None:intergenic | 40.0% | |
AATGAAGGGTTGTGGGATAA+TGG | + | chr2_2:1988104-1988123 | Msa0230140:CDS | 40.0% | |
TACAGAGTAAGGTGTGTAAG+TGG | + | chr2_2:1988146-1988165 | Msa0230140:CDS | 40.0% | |
GGAATCAATAAGCCATGCAA+AGG | + | chr2_2:1988167-1988186 | Msa0230140:CDS | 40.0% | |
ATCAATAAGCCATGCAAAGG+TGG | + | chr2_2:1988170-1988189 | Msa0230140:CDS | 40.0% | |
ATACTACTACCACCTTTGCA+TGG | - | chr2_2:1988182-1988201 | None:intergenic | 40.0% | |
! | AGTTGACATGTGGAAAGTGT+GGG | - | chr2_2:1988252-1988271 | None:intergenic | 40.0% |
CAAATGCTTCAGTTGACATG+TGG | - | chr2_2:1988262-1988281 | None:intergenic | 40.0% | |
! | CTACAGCTTGTGATGGGAAT+AGG | + | chr2_2:1988042-1988061 | Msa0230140:CDS | 45.0% |
ATAATGGTGCAGCATGTGGA+AGG | + | chr2_2:1988120-1988139 | Msa0230140:CDS | 45.0% | |
GTGGAAGGAGATACAGAGTA+AGG | + | chr2_2:1988135-1988154 | Msa0230140:CDS | 45.0% | |
! | TTGACATGTGGAAAGTGTGG+GGG | - | chr2_2:1988250-1988269 | None:intergenic | 45.0% |
! | GTTGACATGTGGAAAGTGTG+GGG | - | chr2_2:1988251-1988270 | None:intergenic | 45.0% |
CAGTTGACATGTGGAAAGTG+TGG | - | chr2_2:1988253-1988272 | None:intergenic | 45.0% | |
! | CTACAGCTTGTGATGGGAAT+AGG | + | chr2_2:1988042-1988061 | Msa0230140:CDS | 45.0% |
ATAATGGTGCAGCATGTGGA+AGG | + | chr2_2:1988120-1988139 | Msa0230140:CDS | 45.0% | |
GTGGAAGGAGATACAGAGTA+AGG | + | chr2_2:1988135-1988154 | Msa0230140:CDS | 45.0% | |
! | TTGACATGTGGAAAGTGTGG+GGG | - | chr2_2:1988250-1988269 | None:intergenic | 45.0% |
! | GTTGACATGTGGAAAGTGTG+GGG | - | chr2_2:1988251-1988270 | None:intergenic | 45.0% |
CAGTTGACATGTGGAAAGTG+TGG | - | chr2_2:1988253-1988272 | None:intergenic | 45.0% | |
! | TGATACCGATTGGTTGGAGG+TGG | + | chr2_2:1987697-1987716 | Msa0230140:intron | 50.0% |
TGTGCAGCTACAGCTTGTGA+TGG | + | chr2_2:1988035-1988054 | Msa0230140:intron | 50.0% | |
GTGCAGCTACAGCTTGTGAT+GGG | + | chr2_2:1988036-1988055 | Msa0230140:intron | 50.0% | |
AGGAGACAACAGTTTCCACC+AGG | + | chr2_2:1988062-1988081 | Msa0230140:CDS | 50.0% | |
TGGCAGTGAATGAAGGGTTG+TGG | + | chr2_2:1988096-1988115 | Msa0230140:CDS | 50.0% | |
GGCAGTGAATGAAGGGTTGT+GGG | + | chr2_2:1988097-1988116 | Msa0230140:CDS | 50.0% | |
! | TGGGATAATGGTGCAGCATG+TGG | + | chr2_2:1988116-1988135 | Msa0230140:CDS | 50.0% |
! | TGATACCGATTGGTTGGAGG+TGG | + | chr2_2:1987697-1987716 | Msa0230140:intron | 50.0% |
TGTGCAGCTACAGCTTGTGA+TGG | + | chr2_2:1988035-1988054 | Msa0230140:intron | 50.0% | |
GTGCAGCTACAGCTTGTGAT+GGG | + | chr2_2:1988036-1988055 | Msa0230140:intron | 50.0% | |
AGGAGACAACAGTTTCCACC+AGG | + | chr2_2:1988062-1988081 | Msa0230140:CDS | 50.0% | |
TGGCAGTGAATGAAGGGTTG+TGG | + | chr2_2:1988096-1988115 | Msa0230140:CDS | 50.0% | |
GGCAGTGAATGAAGGGTTGT+GGG | + | chr2_2:1988097-1988116 | Msa0230140:CDS | 50.0% | |
! | TGGGATAATGGTGCAGCATG+TGG | + | chr2_2:1988116-1988135 | Msa0230140:CDS | 50.0% |
! | GTGGAAAGTGTGGGGGCATG+AGG | - | chr2_2:1988243-1988262 | None:intergenic | 60.0% |
! | GTGGAAAGTGTGGGGGCATG+AGG | - | chr2_2:1988243-1988262 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 1987367 | 1988334 | 1987367 | ID=Msa0230140;Name=Msa0230140 |
chr2_2 | mRNA | 1987367 | 1988334 | 1987367 | ID=Msa0230140-mRNA-1;Parent=Msa0230140;Name=Msa0230140-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|153 |
chr2_2 | exon | 1987367 | 1987535 | 1987367 | ID=Msa0230140-mRNA-1:exon:760;Parent=Msa0230140-mRNA-1 |
chr2_2 | exon | 1988042 | 1988334 | 1988042 | ID=Msa0230140-mRNA-1:exon:761;Parent=Msa0230140-mRNA-1 |
chr2_2 | CDS | 1987367 | 1987535 | 1987367 | ID=Msa0230140-mRNA-1:cds;Parent=Msa0230140-mRNA-1 |
chr2_2 | CDS | 1988042 | 1988334 | 1988042 | ID=Msa0230140-mRNA-1:cds;Parent=Msa0230140-mRNA-1 |
Gene Sequence |
Protein sequence |