AlfalfaGEDB | Msa0230140

M. sativa cultivar zhongmu-4 / Msa0230140

KEGG: -
GO: -
PFAM: PF03330.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230140	AES73668.1	96.732	153	2	2	1	153	1	150	3.65e-103	301

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230140	sp\|Q9ZV52\|EGC2_ARATH	37.879	132	68	5	23	151	7	127	1.75e-18	79.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230140	G7JB40	96.732	153	2	2	1	153	1	150	1.75e-103	301

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0059880	Msa0230140	0.814731	1.326881e-51	-8.615850e-47
Msa0143710	Msa0230140	0.803609	3.212476e-49	-8.615850e-47
Msa0230140	Msa0382610	0.972814	2.197172e-135	-8.615850e-47
Msa0230140	Msa0480400	0.932774	5.132669e-95	-8.615850e-47
Msa0230140	Msa0524900	0.809583	1.761352e-50	-8.615850e-47
Msa0230140	Msa0524930	0.871929	4.696472e-67	-8.615850e-47
Msa0230140	Msa0933580	0.801319	9.525381e-49	-8.615850e-47
Msa0230140	Msa1109890	0.802331	5.901878e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230140	MtrunA17_Chr3g0137931	96.732	153	2	2	1	153	1	150	3.36e-107	301
Msa0230140	MtrunA17_Chr6g0477991	93.750	96	6	0	58	153	7	102	5.64e-65	193
Msa0230140	MtrunA17_Chr6g0476161	87.879	66	8	0	76	141	10	75	1.65e-38	127
Msa0230140	MtrunA17_Chr3g0138201	61.538	52	20	0	43	94	28	79	4.12e-19	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230140	AT2G18660.1	37.879	132	68	5	23	151	7	127	1.78e-19	79.3
Msa0230140	AT4G30380.1	33.333	132	68	6	27	152	5	122	4.97e-11	57.0

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Find 31 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAGGGTTGTGGGATAA+TGG	0.441192	2_2:+1988104	Msa0230140:CDS
ACTGCCACAAATATATTTCC+TGG	0.404012	2_2:-1988080	None:intergenic
AGCATTATTCTTGCAGATGT+TGG	0.481138	2_2:+1987481	Msa0230140:CDS
AGGAGACAACAGTTTCCACC+AGG	0.667613	2_2:+1988062	Msa0230140:CDS
AGTTGACATGTGGAAAGTGT+GGG	0.573051	2_2:-1988249	None:intergenic
ATAATGGTGCAGCATGTGGA+AGG	0.648736	2_2:+1988120	Msa0230140:CDS
ATACTACTACCACCTTTGCA+TGG	0.578652	2_2:-1988179	None:intergenic
ATATTTGTGGCAGTGAATGA+AGG	0.490865	2_2:+1988089	Msa0230140:CDS
ATCAATAAGCCATGCAAAGG+TGG	0.523686	2_2:+1988170	Msa0230140:CDS
CAAATGCTTCAGTTGACATG+TGG	0.644023	2_2:-1988259	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAATCGGTATCATTATA+GGG	-	chr2_2:1987692-1987711	None:intergenic	30.0%
AACCAATCGGTATCATTATA+GGG	-	chr2_2:1987692-1987711	None:intergenic	30.0%
TGCTCATTTGTTTGAGCAAT+AGG	-	chr2_2:1987465-1987484	None:intergenic	35.0%
AGCATTATTCTTGCAGATGT+TGG	+	chr2_2:1987481-1987500	Msa0230140:CDS	35.0%
AGTTTAGTGCATCACCTTAT+AGG	+	chr2_2:1987646-1987665	Msa0230140:intron	35.0%
ACCAATCGGTATCATTATAG+GGG	-	chr2_2:1987691-1987710	None:intergenic	35.0%
CAACCAATCGGTATCATTAT+AGG	-	chr2_2:1987693-1987712	None:intergenic	35.0%
TCCACCAGGAAATATATTTG+TGG	+	chr2_2:1988076-1988095	Msa0230140:CDS	35.0%
ACTGCCACAAATATATTTCC+TGG	-	chr2_2:1988083-1988102	None:intergenic	35.0%
ATATTTGTGGCAGTGAATGA+AGG	+	chr2_2:1988089-1988108	Msa0230140:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	1987367	1988334	1987367	ID=Msa0230140;Name=Msa0230140
chr2_2	mRNA	1987367	1988334	1987367	ID=Msa0230140-mRNA-1;Parent=Msa0230140;Name=Msa0230140-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|153
chr2_2	exon	1987367	1987535	1987367	ID=Msa0230140-mRNA-1:exon:760;Parent=Msa0230140-mRNA-1
chr2_2	exon	1988042	1988334	1988042	ID=Msa0230140-mRNA-1:exon:761;Parent=Msa0230140-mRNA-1
chr2_2	CDS	1987367	1987535	1987367	ID=Msa0230140-mRNA-1:cds;Parent=Msa0230140-mRNA-1
chr2_2	CDS	1988042	1988334	1988042	ID=Msa0230140-mRNA-1:cds;Parent=Msa0230140-mRNA-1

Gene Sequence

>Msa0230140

ATGTACCATCAAGCAAAAAATCATAGTTTGCGTATATCAATCATAGCTCAAAAACAAATAATGAGGTCATTTATGCTTGTTGTAATAATTTCAAGCCTATTGCTCAAACAAATGAGCATTATTCTTGCAGATGTTGGTACTGCTTCTTCTTATGGTCCTCCATATATACCTACAGCTTGTGATGGGAATAGGAGACAACAGTTTCCACCAGGAAATATATTTGTGGCAGTGAATGAAGGGTTGTGGGATAATGGTGCAGCATGTGGAAGGAGATACAGAGTAAGGTGTGTAAGTGGAATCAATAAGCCATGCAAAGGTGGTAGTAGTATTGATGTTAAAGTTGTTGATTCTATTACTTGTACAAGATCCTCATGCCCCCACACTTTCCACATGTCAACTGAAGCATTTGCAGCTATCTCACGCTTCCCTAATGCAAATATCAATGTTGAATACATTCAGTAA

Protein sequence

>Msa0230140

MYHQAKNHSLRISIIAQKQIMRSFMLVVIISSLLLKQMSIILADVGTASSYGPPYIPTACDGNRRQQFPPGNIFVAVNEGLWDNGAACGRRYRVRCVSGINKPCKGGSSIDVKVVDSITCTRSSCPHTFHMSTEAFAAISRFPNANINVEYIQ*