AlfalfaGEDB | Msa0933580

M. sativa cultivar zhongmu-4 / Msa0933580

KEGG: -
GO: -
PFAM: PF00190.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933580	KAF1870101.1	69.289	394	72	6	5	350	4	396	1.90e-171	493

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933580	sp\|Q6K5Q0\|GL21_ORYSJ	70.225	178	51	1	174	349	39	216	9.63e-80	246
Msa0933580	sp\|Q6K5Q0\|GL21_ORYSJ	65.363	179	54	4	1	173	1	177	4.91e-66	211

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0933580	0.828502	8.676649e-55	-8.615850e-47
Msa0012820	Msa0933580	0.800617	1.324969e-48	-8.615850e-47
Msa0014590	Msa0933580	0.808848	2.530939e-50	-8.615850e-47
Msa0024280	Msa0933580	0.800089	1.697350e-48	-8.615850e-47
Msa0027860	Msa0933580	0.815821	7.596507e-52	-8.615850e-47
Msa0036580	Msa0933580	0.810583	1.072651e-50	-8.615850e-47
Msa0048950	Msa0933580	0.806428	8.264097e-50	-8.615850e-47
Msa0059880	Msa0933580	0.868678	5.460349e-66	-8.615850e-47
Msa0061600	Msa0933580	0.806384	8.445867e-50	-8.615850e-47
Msa0064990	Msa0933580	0.811923	5.490915e-51	-8.615850e-47

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933580	MtrunA17_Chr6g0449731	94.022	184	11	0	170	353	36	219	3.85e-121	348
Msa0933580	MtrunA17_Chr6g0449731	90.576	191	12	2	1	185	1	191	6.08e-118	340
Msa0933580	MtrunA17_Chr6g0449771	93.011	186	13	0	169	354	35	220	4.20e-121	348
Msa0933580	MtrunA17_Chr6g0449771	90.052	191	13	2	1	185	1	191	3.38e-117	338
Msa0933580	MtrunA17_Chr6g0449751	95.028	181	9	0	174	354	40	220	3.21e-120	346
Msa0933580	MtrunA17_Chr6g0449751	87.435	191	18	2	1	185	1	191	3.26e-113	328
Msa0933580	MtrunA17_Chr6g0449761	93.370	181	12	0	170	350	36	216	1.03e-117	340
Msa0933580	MtrunA17_Chr6g0449761	89.005	191	15	2	1	185	1	191	5.84e-116	336
Msa0933580	MtrunA17_Chr1g0189841	70.909	220	56	3	143	354	3	222	7.51e-102	299
Msa0933580	MtrunA17_Chr1g0189841	82.081	173	25	4	7	173	6	178	2.49e-91	272

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0933580	AT5G38940.1	64.550	189	65	1	163	349	33	221	4.03e-79	242
Msa0933580	AT5G38940.1	68.790	157	44	2	22	173	26	182	2.80e-68	214
Msa0933580	AT5G38940.2	64.550	189	65	1	163	349	57	245	8.64e-79	242
Msa0933580	AT5G38940.2	68.790	157	44	2	22	173	50	206	5.03e-68	214
Msa0933580	AT5G38930.1	67.760	183	57	1	169	349	39	221	1.92e-78	240
Msa0933580	AT5G38930.1	68.553	159	45	2	20	173	24	182	5.90e-68	213
Msa0933580	AT5G39110.1	65.385	182	60	2	171	349	39	220	7.12e-76	233
Msa0933580	AT5G39110.1	65.143	175	55	3	4	172	6	180	1.14e-68	215
Msa0933580	AT3G05950.1	68.156	179	54	2	174	349	43	221	4.65e-75	231
Msa0933580	AT3G05950.1	66.471	170	49	5	11	173	14	182	1.36e-64	205

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

Find 78 sgRNAs with CRISPR-Local

Find 805 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAAGTCTTGTAGAGGGC+TGG	0.457530	6_3:-2099434	Msa0933570:intron
ACAAGATGCTAAAGCCAAGA+AGG	0.574992	6_3:-2099395	Msa0933570:intron
ACTATTGCTAATGCTGTATT+TGG	0.046653	6_3:+2112264	Msa0933580:CDS
ACTTGGTTCAAAAGTGACAC+CGG	0.669513	6_3:+2111936	Msa0933580:CDS
AGAACTTCTGAAGAGATCTT+TGG	0.276106	6_3:-2112294	None:intergenic
AGGGCTGGGATCAAAGGCAA+AGG	0.641928	6_3:-2099419	Msa0933570:intron
AGTATACATACCACCATTCT+TGG	0.356363	6_3:-2099473	Msa0933570:intron
AGTATCTCATTAACGGTAAC+CGG	0.427049	6_3:-2111955	None:intergenic
ATAAGAATCTCAGTGGCTCT+AGG	0.464256	6_3:-2112054	None:intergenic
ATAAGAATTTCAGTGGCTCT+AGG	0.464256	6_3:-2099865	Msa0933570:intron

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAACCGTTAACGAGATATTA+GGG	+	chr6_3:2099770-2099789	Msa0933580:CDS	30.0%
TAACCCTAATATCTCGTTAA+CGG	-	chr6_3:2099776-2099795	Msa0933570:intron	30.0%
ATATTAGGGTTAAACACACT+TGG	+	chr6_3:2099784-2099803	Msa0933580:CDS	30.0%
CATTCAATTGAAAGTGAATG+AGG	-	chr6_3:2105240-2105259	Msa0933590:CDS	30.0%
TTTCAATTGAATGTTGGGTA+TGG	+	chr6_3:2100003-2100022	Msa0933580:CDS	30.0%
ACTATTGCTAATGCTGTATT+TGG	+	chr6_3:2100075-2100094	Msa0933580:intron	30.0%
CTATTGCTAATGCTGTATTT+GGG	+	chr6_3:2100076-2100095	Msa0933580:intron	30.0%
GAAACACAAATATAAGAGCA+AGG	-	chr6_3:2100320-2100339	Msa0933570:intron	30.0%
TGCTTATAATTTGAACCAGA+AGG	-	chr6_3:2100561-2100580	Msa0933570:intron	30.0%
GTTTCTATCCTCATAGTTAA+TGG	-	chr6_3:2100636-2100655	Msa0933570:intron	30.0%

Showing 1 to 10 of 805 entries

Previous1 2 3 4 5…81Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	2099367	2112389	2099367	ID=Msa0933580;Name=Msa0933580
chr6_3	mRNA	2099367	2112389	2099367	ID=Msa0933580-mRNA-1;Parent=Msa0933580;Name=Msa0933580-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|1\|0.33\|0.5\|4\|0\|354
chr6_3	exon	2099367	2099484	2099367	ID=Msa0933580-mRNA-1:exon:863;Parent=Msa0933580-mRNA-1
chr6_3	exon	2099656	2099888	2099656	ID=Msa0933580-mRNA-1:exon:864;Parent=Msa0933580-mRNA-1
chr6_3	exon	2099898	2100066	2099898	ID=Msa0933580-mRNA-1:exon:865;Parent=Msa0933580-mRNA-1
chr6_3	exon	2111845	2112389	2111845	ID=Msa0933580-mRNA-1:exon:866;Parent=Msa0933580-mRNA-1
chr6_3	CDS	2099367	2099484	2099367	ID=Msa0933580-mRNA-1:cds;Parent=Msa0933580-mRNA-1
chr6_3	CDS	2099656	2099888	2099656	ID=Msa0933580-mRNA-1:cds;Parent=Msa0933580-mRNA-1
chr6_3	CDS	2099898	2100066	2099898	ID=Msa0933580-mRNA-1:cds;Parent=Msa0933580-mRNA-1
chr6_3	CDS	2111845	2112389	2111845	ID=Msa0933580-mRNA-1:cds;Parent=Msa0933580-mRNA-1

Gene Sequence

>Msa0933580

ATGAAGACTTCAATCTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCCAGCCCTCTACAAGACTTTTGTGTGGCTATCAATGACACCAAGAATGGTGTATTTGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTACACCAAATGATTTCTTTTTCTCAGTTAAAGAAGGAAACACGTCAAATCCACTTGGTTCAAAAGTGACACAAGTAACCGTTAACGAGATATTAGGGTTAAACACACTTGGTATCTCTCTTGCTCGCGTTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAAATTCTTATAGGTACACTTTATGTCGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTAAATAAAGGAGATGTGTTTGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCTCTCGCCATTGCTGGACTTAGCAGCCAAAATCCAGTGTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCATGCTACGGCAAATGATTTCTTCTACTCGGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACACCGGTTACCGTTAATGAGATACTAGGACTAAACACTCTAGGTATCTCTCTTGCTCGTATTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATAGTGTTGGAGGGTACTCTCTATGTCGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCTCTCGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTTATTACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAGATCTCTTCAGAAGTTCTCGCCAAAGCTTTTCAAGTGGATAATAAAATAGTGAACAATCTTCAAAAACAATTTTGGGTGGACAACAACTAG

Protein sequence

>Msa0933580

MKTSILFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATPNDFFFSVKEGNTSNPLGSKVTQVTVNEILGLNTLGISLARVDFASRGLNPPHTHPRATEILIGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNALAIAGLSSQNPVFVNGKFCKDPKHATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNALAIAGLSSQNPGVITIANAVFGSNPKISSEVLAKAFQVDNKIVNNLQKQFWVDNN*