Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0524930 | AES73668.1 | 96.732 | 153 | 2 | 2 | 1 | 153 | 1 | 150 | 3.65e-103 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0524930 | sp|Q9ZV52|EGC2_ARATH | 37.879 | 132 | 68 | 5 | 23 | 151 | 7 | 127 | 1.75e-18 | 79.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0524930 | G7JB40 | 96.732 | 153 | 2 | 2 | 1 | 153 | 1 | 150 | 1.75e-103 | 301 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000800 | Msa0524930 | 0.801762 | 7.724996e-49 | -8.615850e-47 |
Msa0120860 | Msa0524930 | 0.816308 | 5.911865e-52 | -8.615850e-47 |
Msa0230140 | Msa0524930 | 0.871929 | 4.696472e-67 | -8.615850e-47 |
Msa0382610 | Msa0524930 | 0.873226 | 1.732870e-67 | -8.615850e-47 |
Msa0480400 | Msa0524930 | 0.859702 | 3.444514e-63 | -8.615850e-47 |
Msa0242720 | Msa0524930 | 0.800718 | 1.263400e-48 | -8.615850e-47 |
Msa0524900 | Msa0524930 | 0.848839 | 4.746052e-60 | -8.615850e-47 |
Msa0524930 | Msa0526880 | 0.805154 | 1.530915e-49 | -8.615850e-47 |
Msa0524930 | Msa0538050 | -0.810413 | 1.166890e-50 | -8.615850e-47 |
Msa0524930 | Msa0652610 | 0.800914 | 1.152206e-48 | -8.615850e-47 |
Msa0524930 | Msa0826360 | 0.807483 | 4.944162e-50 | -8.615850e-47 |
Msa0524930 | Msa0850480 | 0.801401 | 9.161859e-49 | -8.615850e-47 |
Msa0524930 | Msa0861820 | 0.803642 | 3.162072e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0524930 | MtrunA17_Chr3g0137931 | 96.732 | 153 | 2 | 2 | 1 | 153 | 1 | 150 | 3.36e-107 | 301 |
Msa0524930 | MtrunA17_Chr6g0477991 | 93.750 | 96 | 6 | 0 | 58 | 153 | 7 | 102 | 5.64e-65 | 193 |
Msa0524930 | MtrunA17_Chr6g0476161 | 87.879 | 66 | 8 | 0 | 76 | 141 | 10 | 75 | 1.65e-38 | 127 |
Msa0524930 | MtrunA17_Chr3g0138201 | 61.538 | 52 | 20 | 0 | 43 | 94 | 28 | 79 | 4.12e-19 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0524930 | AT2G18660.1 | 37.879 | 132 | 68 | 5 | 23 | 151 | 7 | 127 | 1.78e-19 | 79.3 |
Msa0524930 | AT4G30380.1 | 33.333 | 132 | 68 | 6 | 27 | 152 | 5 | 122 | 4.97e-11 | 57.0 |
Find 31 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGGTACTGCTTCTTCTTA+TGG | 0.173763 | 3_4:-78483622 | Msa0524930:CDS |
CAACATTGATATTTGCATTA+GGG | 0.294856 | 3_4:+78482824 | None:intergenic |
TGCTCATTTGTTTGAGCAAT+AGG | 0.304172 | 3_4:+78483659 | None:intergenic |
TCAACATTGATATTTGCATT+AGG | 0.306005 | 3_4:+78482823 | None:intergenic |
ACTGCCACAAATATATTTCC+TGG | 0.404012 | 3_4:+78483042 | None:intergenic |
CTACAGCTTGTGATGGGAAT+AGG | 0.406360 | 3_4:-78483080 | Msa0524930:CDS |
TGGGTGTACTCACGTATATA+TGG | 0.432788 | 3_4:+78483595 | None:intergenic |
AATGAAGGGTTGTGGGATAA+TGG | 0.441192 | 3_4:-78483018 | Msa0524930:CDS |
AGCATTATTCTTGCAGATGT+TGG | 0.481138 | 3_4:-78483640 | Msa0524930:CDS |
TGGCAGTGAATGAAGGGTTG+TGG | 0.485625 | 3_4:-78483026 | Msa0524930:CDS |
ATATTTGTGGCAGTGAATGA+AGG | 0.490865 | 3_4:-78483033 | Msa0524930:CDS |
TACAGAGTAAGGTGTGTAAG+TGG | 0.500626 | 3_4:-78482976 | Msa0524930:CDS |
GGCAGTGAATGAAGGGTTGT+GGG | 0.502397 | 3_4:-78483025 | Msa0524930:CDS |
ATCAATAAGCCATGCAAAGG+TGG | 0.523686 | 3_4:-78482952 | Msa0524930:CDS |
TCCACCAGGAAATATATTTG+TGG | 0.549161 | 3_4:-78483046 | Msa0524930:CDS |
AGTTGACATGTGGAAAGTGT+GGG | 0.573051 | 3_4:+78482873 | None:intergenic |
CAGTTGACATGTGGAAAGTG+TGG | 0.576339 | 3_4:+78482872 | None:intergenic |
ATACTACTACCACCTTTGCA+TGG | 0.578652 | 3_4:+78482943 | None:intergenic |
GTGGAAGGAGATACAGAGTA+AGG | 0.582766 | 3_4:-78482987 | Msa0524930:CDS |
TGGGATAATGGTGCAGCATG+TGG | 0.603337 | 3_4:-78483006 | Msa0524930:CDS |
GGAATCAATAAGCCATGCAA+AGG | 0.623535 | 3_4:-78482955 | Msa0524930:CDS |
TATTTGTGGCAGTGAATGAA+GGG | 0.626127 | 3_4:-78483032 | Msa0524930:CDS |
TGTGCAGCTACAGCTTGTGA+TGG | 0.627923 | 3_4:-78483087 | Msa0524930:intron |
GTGCAGCTACAGCTTGTGAT+GGG | 0.628864 | 3_4:-78483086 | Msa0524930:intron |
GCCACAAATATATTTCCTGG+TGG | 0.638508 | 3_4:+78483045 | None:intergenic |
CAAATGCTTCAGTTGACATG+TGG | 0.644023 | 3_4:+78482863 | None:intergenic |
ATAATGGTGCAGCATGTGGA+AGG | 0.648736 | 3_4:-78483002 | Msa0524930:CDS |
AGGAGACAACAGTTTCCACC+AGG | 0.667613 | 3_4:-78483060 | Msa0524930:CDS |
GTGTACTCACGTATATATGG+AGG | 0.706847 | 3_4:+78483598 | None:intergenic |
TTGACATGTGGAAAGTGTGG+GGG | 0.720155 | 3_4:+78482875 | None:intergenic |
GTTGACATGTGGAAAGTGTG+GGG | 0.728941 | 3_4:+78482874 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAATATTGAATGAATAAA+TGG | + | chr3_4:78482995-78483014 | None:intergenic | 15.0% |
!! | AGAAATATTGAATGAATAAA+TGG | + | chr3_4:78482995-78483014 | None:intergenic | 15.0% |
!! | ATATTGAATGAATAAATGGT+GGG | + | chr3_4:78482991-78483010 | None:intergenic | 20.0% |
!! | AATATTGAATGAATAAATGG+TGG | + | chr3_4:78482992-78483011 | None:intergenic | 20.0% |
!!! | GTTCCAAACATTTTAAAAAT+GGG | + | chr3_4:78483305-78483324 | None:intergenic | 20.0% |
!! | ATTAATATGTGAAATTTGTG+TGG | + | chr3_4:78483327-78483346 | None:intergenic | 20.0% |
!! | ATATTGAATGAATAAATGGT+GGG | + | chr3_4:78482991-78483010 | None:intergenic | 20.0% |
!! | AATATTGAATGAATAAATGG+TGG | + | chr3_4:78482992-78483011 | None:intergenic | 20.0% |
!!! | GTTCCAAACATTTTAAAAAT+GGG | + | chr3_4:78483305-78483324 | None:intergenic | 20.0% |
!! | ATTAATATGTGAAATTTGTG+TGG | + | chr3_4:78483327-78483346 | None:intergenic | 20.0% |
!!! | AACTATGATTTTTTGCTTGA+TGG | + | chr3_4:78482818-78482837 | None:intergenic | 25.0% |
! | TAGCTCAAAAACAAATAATG+AGG | - | chr3_4:78482853-78482872 | Msa0524930:CDS | 25.0% |
! | ATGATATATCATGTATACGT+AGG | + | chr3_4:78483022-78483041 | None:intergenic | 25.0% |
! | AGTGTTAAACTAAATGTTGA+TGG | + | chr3_4:78483237-78483256 | None:intergenic | 25.0% |
!!! | AGTCCCATTTTTAAAATGTT+TGG | - | chr3_4:78483299-78483318 | Msa0524930:intron | 25.0% |
!!! | GGTTCCAAACATTTTAAAAA+TGG | + | chr3_4:78483306-78483325 | None:intergenic | 25.0% |
! | CAACATTGATATTTGCATTA+GGG | + | chr3_4:78483743-78483762 | None:intergenic | 25.0% |
! | TCAACATTGATATTTGCATT+AGG | + | chr3_4:78483744-78483763 | None:intergenic | 25.0% |
!!! | AACTATGATTTTTTGCTTGA+TGG | + | chr3_4:78482818-78482837 | None:intergenic | 25.0% |
! | TAGCTCAAAAACAAATAATG+AGG | - | chr3_4:78482853-78482872 | Msa0524930:CDS | 25.0% |
! | ATGATATATCATGTATACGT+AGG | + | chr3_4:78483022-78483041 | None:intergenic | 25.0% |
! | AGTGTTAAACTAAATGTTGA+TGG | + | chr3_4:78483237-78483256 | None:intergenic | 25.0% |
!!! | AGTCCCATTTTTAAAATGTT+TGG | - | chr3_4:78483299-78483318 | Msa0524930:intron | 25.0% |
!!! | GGTTCCAAACATTTTAAAAA+TGG | + | chr3_4:78483306-78483325 | None:intergenic | 25.0% |
! | CAACATTGATATTTGCATTA+GGG | + | chr3_4:78483743-78483762 | None:intergenic | 25.0% |
! | TCAACATTGATATTTGCATT+AGG | + | chr3_4:78483744-78483763 | None:intergenic | 25.0% |
!! | AAAGAGATTAGTCTCCTATA+AGG | + | chr3_4:78483107-78483126 | None:intergenic | 30.0% |
!! | AAAGAGATTAGTCTCCTATA+AGG | + | chr3_4:78483107-78483126 | None:intergenic | 30.0% |
TGCTCATTTGTTTGAGCAAT+AGG | + | chr3_4:78482908-78482927 | None:intergenic | 35.0% | |
AGCATTATTCTTGCAGATGT+TGG | - | chr3_4:78482924-78482943 | Msa0524930:CDS | 35.0% | |
!! | AGAGGTGTTGATATTTAACG+TGG | + | chr3_4:78483065-78483084 | None:intergenic | 35.0% |
AGTTTAGTGCATCACCTTAT+AGG | - | chr3_4:78483090-78483109 | Msa0524930:intron | 35.0% | |
AACCAATCGGTATCATTGTA+GGG | + | chr3_4:78483136-78483155 | None:intergenic | 35.0% | |
TCCACCAGGAAATATATTTG+TGG | - | chr3_4:78483518-78483537 | Msa0524930:intron | 35.0% | |
ACTGCCACAAATATATTTCC+TGG | + | chr3_4:78483525-78483544 | None:intergenic | 35.0% | |
ATATTTGTGGCAGTGAATGA+AGG | - | chr3_4:78483531-78483550 | Msa0524930:intron | 35.0% | |
TATTTGTGGCAGTGAATGAA+GGG | - | chr3_4:78483532-78483551 | Msa0524930:intron | 35.0% | |
TGCTCATTTGTTTGAGCAAT+AGG | + | chr3_4:78482908-78482927 | None:intergenic | 35.0% | |
AGCATTATTCTTGCAGATGT+TGG | - | chr3_4:78482924-78482943 | Msa0524930:CDS | 35.0% | |
!! | AGAGGTGTTGATATTTAACG+TGG | + | chr3_4:78483065-78483084 | None:intergenic | 35.0% |
AGTTTAGTGCATCACCTTAT+AGG | - | chr3_4:78483090-78483109 | Msa0524930:intron | 35.0% | |
AACCAATCGGTATCATTGTA+GGG | + | chr3_4:78483136-78483155 | None:intergenic | 35.0% | |
TCCACCAGGAAATATATTTG+TGG | - | chr3_4:78483518-78483537 | Msa0524930:intron | 35.0% | |
ACTGCCACAAATATATTTCC+TGG | + | chr3_4:78483525-78483544 | None:intergenic | 35.0% | |
ATATTTGTGGCAGTGAATGA+AGG | - | chr3_4:78483531-78483550 | Msa0524930:intron | 35.0% | |
TATTTGTGGCAGTGAATGAA+GGG | - | chr3_4:78483532-78483551 | Msa0524930:intron | 35.0% | |
GTTGGTACTGCTTCTTCTTA+TGG | - | chr3_4:78482942-78482961 | Msa0524930:CDS | 40.0% | |
GTGTACTCACGTATATATGG+AGG | + | chr3_4:78482969-78482988 | None:intergenic | 40.0% | |
TGGGTGTACTCACGTATATA+TGG | + | chr3_4:78482972-78482991 | None:intergenic | 40.0% | |
GATGCACTAAACTACAAGAG+AGG | + | chr3_4:78483083-78483102 | None:intergenic | 40.0% | |
ACCAATCGGTATCATTGTAG+GGG | + | chr3_4:78483135-78483154 | None:intergenic | 40.0% | |
CAACCAATCGGTATCATTGT+AGG | + | chr3_4:78483137-78483156 | None:intergenic | 40.0% | |
! | CTACAATGATACCGATTGGT+TGG | - | chr3_4:78483135-78483154 | Msa0524930:intron | 40.0% |
! | TTTTACCACCTCCAACCAAT+CGG | + | chr3_4:78483149-78483168 | None:intergenic | 40.0% |
GCCACAAATATATTTCCTGG+TGG | + | chr3_4:78483522-78483541 | None:intergenic | 40.0% | |
AATGAAGGGTTGTGGGATAA+TGG | - | chr3_4:78483546-78483565 | Msa0524930:intron | 40.0% | |
TACAGAGTAAGGTGTGTAAG+TGG | - | chr3_4:78483588-78483607 | Msa0524930:intron | 40.0% | |
GGAATCAATAAGCCATGCAA+AGG | - | chr3_4:78483609-78483628 | Msa0524930:CDS | 40.0% | |
ATCAATAAGCCATGCAAAGG+TGG | - | chr3_4:78483612-78483631 | Msa0524930:CDS | 40.0% | |
ATACTACTACCACCTTTGCA+TGG | + | chr3_4:78483624-78483643 | None:intergenic | 40.0% | |
! | AGTTGACATGTGGAAAGTGT+GGG | + | chr3_4:78483694-78483713 | None:intergenic | 40.0% |
CAAATGCTTCAGTTGACATG+TGG | + | chr3_4:78483704-78483723 | None:intergenic | 40.0% | |
GTTGGTACTGCTTCTTCTTA+TGG | - | chr3_4:78482942-78482961 | Msa0524930:CDS | 40.0% | |
GTGTACTCACGTATATATGG+AGG | + | chr3_4:78482969-78482988 | None:intergenic | 40.0% | |
TGGGTGTACTCACGTATATA+TGG | + | chr3_4:78482972-78482991 | None:intergenic | 40.0% | |
GATGCACTAAACTACAAGAG+AGG | + | chr3_4:78483083-78483102 | None:intergenic | 40.0% | |
ACCAATCGGTATCATTGTAG+GGG | + | chr3_4:78483135-78483154 | None:intergenic | 40.0% | |
CAACCAATCGGTATCATTGT+AGG | + | chr3_4:78483137-78483156 | None:intergenic | 40.0% | |
! | CTACAATGATACCGATTGGT+TGG | - | chr3_4:78483135-78483154 | Msa0524930:intron | 40.0% |
! | TTTTACCACCTCCAACCAAT+CGG | + | chr3_4:78483149-78483168 | None:intergenic | 40.0% |
GCCACAAATATATTTCCTGG+TGG | + | chr3_4:78483522-78483541 | None:intergenic | 40.0% | |
AATGAAGGGTTGTGGGATAA+TGG | - | chr3_4:78483546-78483565 | Msa0524930:intron | 40.0% | |
TACAGAGTAAGGTGTGTAAG+TGG | - | chr3_4:78483588-78483607 | Msa0524930:intron | 40.0% | |
GGAATCAATAAGCCATGCAA+AGG | - | chr3_4:78483609-78483628 | Msa0524930:CDS | 40.0% | |
ATCAATAAGCCATGCAAAGG+TGG | - | chr3_4:78483612-78483631 | Msa0524930:CDS | 40.0% | |
ATACTACTACCACCTTTGCA+TGG | + | chr3_4:78483624-78483643 | None:intergenic | 40.0% | |
! | AGTTGACATGTGGAAAGTGT+GGG | + | chr3_4:78483694-78483713 | None:intergenic | 40.0% |
CAAATGCTTCAGTTGACATG+TGG | + | chr3_4:78483704-78483723 | None:intergenic | 40.0% | |
ACCCCTACAATGATACCGAT+TGG | - | chr3_4:78483131-78483150 | Msa0524930:intron | 45.0% | |
! | CAATGATACCGATTGGTTGG+AGG | - | chr3_4:78483138-78483157 | Msa0524930:intron | 45.0% |
! | CTACAGCTTGTGATGGGAAT+AGG | - | chr3_4:78483484-78483503 | Msa0524930:intron | 45.0% |
ATAATGGTGCAGCATGTGGA+AGG | - | chr3_4:78483562-78483581 | Msa0524930:intron | 45.0% | |
GTGGAAGGAGATACAGAGTA+AGG | - | chr3_4:78483577-78483596 | Msa0524930:intron | 45.0% | |
! | TTGACATGTGGAAAGTGTGG+GGG | + | chr3_4:78483692-78483711 | None:intergenic | 45.0% |
! | GTTGACATGTGGAAAGTGTG+GGG | + | chr3_4:78483693-78483712 | None:intergenic | 45.0% |
CAGTTGACATGTGGAAAGTG+TGG | + | chr3_4:78483695-78483714 | None:intergenic | 45.0% | |
ACCCCTACAATGATACCGAT+TGG | - | chr3_4:78483131-78483150 | Msa0524930:intron | 45.0% | |
! | CAATGATACCGATTGGTTGG+AGG | - | chr3_4:78483138-78483157 | Msa0524930:intron | 45.0% |
! | CTACAGCTTGTGATGGGAAT+AGG | - | chr3_4:78483484-78483503 | Msa0524930:intron | 45.0% |
ATAATGGTGCAGCATGTGGA+AGG | - | chr3_4:78483562-78483581 | Msa0524930:intron | 45.0% | |
GTGGAAGGAGATACAGAGTA+AGG | - | chr3_4:78483577-78483596 | Msa0524930:intron | 45.0% | |
! | TTGACATGTGGAAAGTGTGG+GGG | + | chr3_4:78483692-78483711 | None:intergenic | 45.0% |
! | GTTGACATGTGGAAAGTGTG+GGG | + | chr3_4:78483693-78483712 | None:intergenic | 45.0% |
CAGTTGACATGTGGAAAGTG+TGG | + | chr3_4:78483695-78483714 | None:intergenic | 45.0% | |
! | TGATACCGATTGGTTGGAGG+TGG | - | chr3_4:78483141-78483160 | Msa0524930:intron | 50.0% |
TGTGCAGCTACAGCTTGTGA+TGG | - | chr3_4:78483477-78483496 | Msa0524930:intron | 50.0% | |
GTGCAGCTACAGCTTGTGAT+GGG | - | chr3_4:78483478-78483497 | Msa0524930:intron | 50.0% | |
AGGAGACAACAGTTTCCACC+AGG | - | chr3_4:78483504-78483523 | Msa0524930:intron | 50.0% | |
TGGCAGTGAATGAAGGGTTG+TGG | - | chr3_4:78483538-78483557 | Msa0524930:intron | 50.0% | |
GGCAGTGAATGAAGGGTTGT+GGG | - | chr3_4:78483539-78483558 | Msa0524930:intron | 50.0% | |
! | TGGGATAATGGTGCAGCATG+TGG | - | chr3_4:78483558-78483577 | Msa0524930:intron | 50.0% |
! | TGATACCGATTGGTTGGAGG+TGG | - | chr3_4:78483141-78483160 | Msa0524930:intron | 50.0% |
TGTGCAGCTACAGCTTGTGA+TGG | - | chr3_4:78483477-78483496 | Msa0524930:intron | 50.0% | |
GTGCAGCTACAGCTTGTGAT+GGG | - | chr3_4:78483478-78483497 | Msa0524930:intron | 50.0% | |
AGGAGACAACAGTTTCCACC+AGG | - | chr3_4:78483504-78483523 | Msa0524930:intron | 50.0% | |
TGGCAGTGAATGAAGGGTTG+TGG | - | chr3_4:78483538-78483557 | Msa0524930:intron | 50.0% | |
GGCAGTGAATGAAGGGTTGT+GGG | - | chr3_4:78483539-78483558 | Msa0524930:intron | 50.0% | |
! | TGGGATAATGGTGCAGCATG+TGG | - | chr3_4:78483558-78483577 | Msa0524930:intron | 50.0% |
! | GTGGAAAGTGTGGGGGCATG+AGG | + | chr3_4:78483685-78483704 | None:intergenic | 60.0% |
! | GTGGAAAGTGTGGGGGCATG+AGG | + | chr3_4:78483685-78483704 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 78482810 | 78483776 | 78482810 | ID=Msa0524930;Name=Msa0524930 |
chr3_4 | mRNA | 78482810 | 78483776 | 78482810 | ID=Msa0524930-mRNA-1;Parent=Msa0524930;Name=Msa0524930-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|153 |
chr3_4 | exon | 78483608 | 78483776 | 78483608 | ID=Msa0524930-mRNA-1:exon:23261;Parent=Msa0524930-mRNA-1 |
chr3_4 | exon | 78482810 | 78483102 | 78482810 | ID=Msa0524930-mRNA-1:exon:23260;Parent=Msa0524930-mRNA-1 |
chr3_4 | CDS | 78483608 | 78483776 | 78483608 | ID=Msa0524930-mRNA-1:cds;Parent=Msa0524930-mRNA-1 |
chr3_4 | CDS | 78482810 | 78483102 | 78482810 | ID=Msa0524930-mRNA-1:cds;Parent=Msa0524930-mRNA-1 |
Gene Sequence |
Protein sequence |