AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036850 MtrunA17_Chr1g0193411 95.652 391 2 2 1 383 1 384 0.0 754
Msa0036850 MtrunA17_Chr8g0380081 25.606 289 190 7 1 281 1 272 3.31e-15 75.9
Msa0036850 MtrunA17_Chr7g0246801 30.282 284 160 16 1 273 1 257 2.94e-14 74.3
Msa0036850 MtrunA17_Chr6g0482931 24.784 347 239 10 1 334 1 338 6.04e-14 73.2
Msa0036850 MtrunA17_Chr7g0228021 30.508 118 72 2 133 250 1031 1138 9.86e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036850 AT5G26680.2 81.074 391 58 3 1 383 1 383 0.0 646
Msa0036850 AT5G26680.5 82.880 368 48 2 1 360 1 361 0.0 628
Msa0036850 AT5G26680.4 82.880 368 48 2 1 360 1 361 0.0 628
Msa0036850 AT5G26680.3 82.880 368 48 2 1 360 1 361 0.0 628
Msa0036850 AT5G26680.1 83.060 366 47 2 1 358 1 359 0.0 623
Msa0036850 AT1G29630.2 28.214 280 176 7 1 271 1 264 1.01e-17 85.5
Msa0036850 AT3G28030.4 31.579 133 81 3 118 250 721 843 2.82e-13 72.0
Msa0036850 AT3G28030.2 31.579 133 81 3 118 250 913 1035 3.24e-13 72.0
Msa0036850 AT3G28030.1 31.579 133 81 3 118 250 913 1035 3.66e-13 71.6
Msa0036850 AT3G28030.3 31.579 133 81 3 118 250 939 1061 3.67e-13 71.6
Msa0036850 AT1G01880.2 28.629 248 153 10 19 263 16 242 8.01e-13 70.5

Find 101 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGACTTATGTATACTTTC+TGG 0.201124 1_1:+65691892 Msa0036850:CDS
TTTGTTCTCCTTCATTGATT+TGG 0.219066 1_1:-65689077 None:intergenic
ATTAGATGGCGAAGAAATTT+AGG 0.232530 1_1:-65691703 None:intergenic
TTGTTCTCCTTCATTGATTT+GGG 0.261805 1_1:-65689076 None:intergenic
GCAACGTCAAATTCCATTAC+TGG 0.277285 1_1:-65691748 None:intergenic
TAATTTAAGTTAGATAATTC+TGG 0.292059 1_1:+65695027 Msa0036850:three_prime_UTR
CAATGTGTGCCACAGGTATT+GGG 0.301115 1_1:+65692044 Msa0036850:intron
ACCAGATGATTGGCCGTATC+AGG 0.302586 1_1:+65692398 Msa0036850:CDS
TAAATTTCTTCGCCATCTAA+TGG 0.313159 1_1:+65691705 Msa0036850:CDS
AGTTGGATTTGTATCTTAGA+TGG 0.321968 1_1:+65694794 Msa0036850:exon
ATAGTTATTACTTCTTCATC+TGG 0.327089 1_1:-65692492 None:intergenic
TCAAACAACGATGGGTATTA+AGG 0.329268 1_1:+65688908 Msa0036850:exon
CCGTACGAAAACACCTTTAC+AGG 0.342794 1_1:+65688795 None:intergenic
TTGAACTAGGATCCATTAGA+TGG 0.369663 1_1:-65691717 None:intergenic
GTACATACCTTCCGTTTGAT+AGG 0.370776 1_1:-65692964 None:intergenic
AGAATGGGTTCAACAGTGAT+AGG 0.372124 1_1:+65692667 Msa0036850:CDS
TGTGCTGCACTTTGCAAAGC+TGG 0.379737 1_1:+65690511 Msa0036850:CDS
GACATGGATTCCTTAACGTT+TGG 0.380008 1_1:+65691676 Msa0036850:CDS
CAAGTTAAATTAACTCGAAA+AGG 0.387802 1_1:-65695102 None:intergenic
TGAAACCACTTACAAGAAAC+TGG 0.396979 1_1:-65689153 None:intergenic
AGCTCTTGATTCTTCATCTC+CGG 0.402266 1_1:-65689893 None:intergenic
TCCTGATACGGCCAATCATC+TGG 0.411236 1_1:-65692399 None:intergenic
AACAAATTCGAATCTTACTT+TGG 0.413135 1_1:+65689094 Msa0036850:CDS
TGACGGCAGAAAGATGAATA+AGG 0.423648 1_1:-65688850 None:intergenic
TTTAGGAGCTCCAAACGTTA+AGG 0.426815 1_1:-65691686 None:intergenic
GTATACATAAGTCAATAAAT+TGG 0.431271 1_1:-65691885 None:intergenic
ACATTTCTAGTAAATGAGAA+TGG 0.445257 1_1:+65692651 Msa0036850:CDS
GTGAATGATGCTAAAGCTAA+AGG 0.452022 1_1:+65694727 Msa0036850:CDS
TGCAACGTCACCTCAACAAC+AGG 0.456473 1_1:-65690398 None:intergenic
ATGAAGTACTTAATCTTAAG+TGG 0.475016 1_1:+65692463 Msa0036850:CDS
CGAGGCTACCGCGGGTTTGA+CGG 0.478333 1_1:+65690039 Msa0036850:CDS
TTCAAAGAAGATTCCAGTAA+TGG 0.481227 1_1:+65691735 Msa0036850:CDS
TTGCAGAGGATAATGTGAAC+TGG 0.481897 1_1:-65688877 None:intergenic
ACATTGAGCCTCTGCTTCTG+AGG 0.483766 1_1:-65690491 None:intergenic
TCATCATCAGTTATGACCTC+TGG 0.494511 1_1:-65692444 None:intergenic
TTAGCTTTAGCATCATTCAC+TGG 0.498319 1_1:-65694724 None:intergenic
ACTGGAATCTTCTTTGAACT+AGG 0.498453 1_1:-65691730 None:intergenic
ATCCATCAGTACCTATCAAA+CGG 0.498859 1_1:+65692953 Msa0036850:CDS
TGAATGATGCTAAAGCTAAA+GGG 0.506104 1_1:+65694728 Msa0036850:CDS
GTTGGATTTGTATCTTAGAT+GGG 0.507708 1_1:+65694795 Msa0036850:exon
TGCACTTTGCAAAGCTGGAA+AGG 0.511154 1_1:+65690516 Msa0036850:CDS
TAGATTGTTGTGGGAAGAAG+TGG 0.512021 1_1:+65689248 Msa0036850:intron
GGTACTGATGGATTTGCAGT+TGG 0.513657 1_1:-65692943 None:intergenic
TTCCGTTTGATAGGTACTGA+TGG 0.513936 1_1:-65692955 None:intergenic
CATTTCTAGTAAATGAGAAT+GGG 0.515548 1_1:+65692652 Msa0036850:CDS
GGTACCAGGTACCAGATGAT+TGG 0.518316 1_1:+65692388 Msa0036850:intron
CAATCAGACTTCTAGAAGCC+GGG 0.522415 1_1:+65689729 Msa0036850:CDS
TAGCATCAACAGCAATCTTA+CGG 0.527772 1_1:-65689117 None:intergenic
ACAATCAGACTTCTAGAAGC+CGG 0.528458 1_1:+65689728 Msa0036850:CDS
CATGGGAGTGCCTGTTGTTG+AGG 0.530578 1_1:+65690388 Msa0036850:CDS
AGTCGTCGAGCCTCCTGATA+CGG 0.531492 1_1:-65692411 None:intergenic
CATTGAGCCTCTGCTTCTGA+GGG 0.532841 1_1:-65690490 None:intergenic
AAGTTAAATTAACTCGAAAA+GGG 0.536894 1_1:-65695101 None:intergenic
CGTCAAACCCGCGGTAGCCT+CGG 0.539383 1_1:-65690038 None:intergenic
AGGGAGTAACAAGAAAACTA+AGG 0.546996 1_1:+65694747 Msa0036850:CDS
TCCCGCGCACTCTCCTGTAA+AGG 0.554282 1_1:-65688808 None:intergenic
GAATTACACTGGCTTCATCC+CGG 0.555023 1_1:-65689747 None:intergenic
GTCATTTCAGGCTGACAACA+AGG 0.555566 1_1:+65690168 Msa0036850:intron
GTTATTACTTCTTCATCTGG+AGG 0.556809 1_1:-65692489 None:intergenic
TGCTGTGGCTTCTGAAGACA+TGG 0.557625 1_1:+65691660 Msa0036850:CDS
ATTCTCATTCAAACAACGAT+GGG 0.565501 1_1:+65688900 Msa0036850:exon
TAATGCTCCCAAATCAATGA+AGG 0.565914 1_1:+65689069 Msa0036850:CDS
GAGTCATTTACATGTTGACC+AGG 0.570576 1_1:+65694820 Msa0036850:three_prime_UTR
CACCTTTACAGGAGAGTGCG+CGG 0.572258 1_1:+65688806 Msa0036850:five_prime_UTR
AAAGAGAGCCGAGGCTACCG+CGG 0.575078 1_1:+65690030 Msa0036850:CDS
TAAGTCAATAAATTGGTCCA+TGG 0.575375 1_1:-65691878 None:intergenic
GATTACTGTGACAACATTCG+AGG 0.577617 1_1:+65691919 Msa0036850:CDS
GAAATGTTGACTAATGAAGC+TGG 0.580121 1_1:+65689275 Msa0036850:CDS
AATGGAATTTGACGTTGCAA+AGG 0.585097 1_1:+65691753 Msa0036850:CDS
AAGAGAGCCGAGGCTACCGC+GGG 0.585100 1_1:+65690031 Msa0036850:CDS
TTTGCAGTTGGCATGAAGGA+GGG 0.585902 1_1:+65694942 Msa0036850:intron
AATTCTCATTCAAACAACGA+TGG 0.591195 1_1:+65688899 Msa0036850:exon
ACGGCCAATCATCTGGTACC+TGG 0.591435 1_1:-65692392 None:intergenic
AAGAAAACTAAGGCCGGTGG+CGG 0.593257 1_1:+65694757 Msa0036850:CDS
AGAACAAGTCATCACAAGGC+CGG 0.593889 1_1:+65692818 Msa0036850:CDS
TCTTGATTCTTCATCTCCGG+TGG 0.593963 1_1:-65689890 None:intergenic
GGGTTTGACGGAAGCTCTAG+AGG 0.596065 1_1:+65690051 Msa0036850:CDS
GAATGGGTTCAACAGTGATA+GGG 0.599805 1_1:+65692668 Msa0036850:CDS
AATGTGTGCCACAGGTATTG+GGG 0.602638 1_1:+65692045 Msa0036850:intron
ATCAGTACCTATCAAACGGA+AGG 0.602952 1_1:+65692957 Msa0036850:CDS
CAACAGTGATAGGGTGACAA+AGG 0.605881 1_1:+65692677 Msa0036850:CDS
GCAGGCACCCTCAGAAGCAG+AGG 0.611684 1_1:+65690483 Msa0036850:intron
AGTAACAAGAAAACTAAGGC+CGG 0.615091 1_1:+65694751 Msa0036850:CDS
ATGTGTGCCACAGGTATTGG+GGG 0.618919 1_1:+65692046 Msa0036850:intron
TTACCACCGATTCAGGTACC+AGG 0.619372 1_1:+65692374 Msa0036850:intron
ACCTTTACAGGAGAGTGCGC+GGG 0.621575 1_1:+65688807 Msa0036850:five_prime_UTR
TATTATACAGGTGTATGCTG+TGG 0.633214 1_1:+65691645 Msa0036850:intron
ATTCAGTAAACGGACAGTGA+AGG 0.645257 1_1:+65690204 Msa0036850:CDS
GGAGGAGCTAGATTTGACCA+TGG 0.645396 1_1:+65691861 Msa0036850:CDS
AGATGATTGGCCGTATCAGG+AGG 0.645693 1_1:+65692401 Msa0036850:CDS
GCAAAGAACAAGTCATCACA+AGG 0.651244 1_1:+65692814 Msa0036850:CDS
TGGAAAACATAAGCAAAGAG+AGG 0.655385 1_1:+65692119 Msa0036850:CDS
TAGAGCTTCCGTCAAACCCG+CGG 0.656861 1_1:-65690047 None:intergenic
CAGTCTCTCAAAGAGAGCCG+AGG 0.661691 1_1:+65690021 Msa0036850:intron
CTGAAGCTCATACGCCAACA+CGG 0.665576 1_1:+65692079 Msa0036850:CDS
ATTTGCAAGGAATGTTTGCG+CGG 0.671541 1_1:+65689705 Msa0036850:intron
TTGTGATACAATGCTTCATG+TGG 0.680961 1_1:+65695060 Msa0036850:three_prime_UTR
AACAAGAAAACTAAGGCCGG+TGG 0.687823 1_1:+65694754 Msa0036850:CDS
GTTTGAATGAGAATTTGCAG+AGG 0.689167 1_1:-65688891 None:intergenic
TAATGTGAACTGGAGTGTGA+CGG 0.699602 1_1:-65688867 None:intergenic
TGTGTGCCACAGGTATTGGG+GGG 0.726679 1_1:+65692047 Msa0036850:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTTAATAAAATAA+AGG - chr1_1:65693522-65693541 None:intergenic 0.0%
!!! TTTTATTAAATATTAATAAT+AGG + chr1_1:65693525-65693544 Msa0036850:intron 0.0%
!! TTTATTAAATATTAATAATA+GGG + chr1_1:65693526-65693545 Msa0036850:intron 0.0%
!!! TTTAATGTTGATTAATTTTT+AGG + chr1_1:65689024-65689043 Msa0036850:intron 10.0%
!!! TTAATGTTGATTAATTTTTA+GGG + chr1_1:65689025-65689044 Msa0036850:intron 10.0%
!!! AAACATTTTATATATTATAC+AGG + chr1_1:65691633-65691652 Msa0036850:intron 10.0%
!!! TTTTGTTTAATTTTTCTGTA+AGG + chr1_1:65689632-65689651 Msa0036850:intron 15.0%
!!! TTTGTTTAATTTTTCTGTAA+GGG + chr1_1:65689633-65689652 Msa0036850:intron 15.0%
!! ATATTGAAAAATTCAGTAAA+CGG + chr1_1:65690194-65690213 Msa0036850:CDS 15.0%
!!! TTATTTATTTTTCATTTCCA+TGG - chr1_1:65690622-65690641 None:intergenic 15.0%
!!! TATTAATTTTAGTTAACATG+TGG + chr1_1:65691019-65691038 Msa0036850:intron 15.0%
!!! ATTAATTTTAGTTAACATGT+GGG + chr1_1:65691020-65691039 Msa0036850:intron 15.0%
!! TCACTTTGAATAAAAATTAT+AGG + chr1_1:65691370-65691389 Msa0036850:intron 15.0%
!!! GTAATGTAACATTTAATTTT+GGG - chr1_1:65691473-65691492 None:intergenic 15.0%
!! TTAAATAGTTTCATAAATAG+TGG - chr1_1:65691495-65691514 None:intergenic 15.0%
!! TCAAATGCAAAAAATATTAA+AGG - chr1_1:65691535-65691554 None:intergenic 15.0%
!! AAAACAAAGAATTTCAAAAT+GGG - chr1_1:65692158-65692177 None:intergenic 15.0%
!! AAATTAATAAAATTTGACTG+TGG - chr1_1:65692330-65692349 None:intergenic 15.0%
!!! ATATCTATGTATCAATTTTT+TGG + chr1_1:65692584-65692603 Msa0036850:intron 15.0%
!!! ATGATTTTTTTTTCAATGTT+AGG + chr1_1:65692771-65692790 Msa0036850:intron 15.0%
!! AATAAATTATAATCACTTAC+CGG - chr1_1:65692840-65692859 None:intergenic 15.0%
!!! CTTAATTTTTTTGGTAAATT+TGG - chr1_1:65693609-65693628 None:intergenic 15.0%
!!! AAATATCAGCTTAATTTTTT+TGG - chr1_1:65693618-65693637 None:intergenic 15.0%
!! TTAATAAAGTAGAAATGAAA+AGG - chr1_1:65694263-65694282 None:intergenic 15.0%
!!! ATTACAGAAAATTGTTATTA+TGG + chr1_1:65694320-65694339 Msa0036850:intron 15.0%
!!! TTATTATCAATTTGTTTTCA+TGG - chr1_1:65694430-65694449 None:intergenic 15.0%
!!! TTTTCAATTATCTTTAACAT+TGG - chr1_1:65694619-65694638 None:intergenic 15.0%
!!! TAATTTAAGTTAGATAATTC+TGG + chr1_1:65695027-65695046 Msa0036850:three_prime_UTR 15.0%
!! TTTCAATTTCAACCTAAAAT+GGG + chr1_1:65689171-65689190 Msa0036850:intron 20.0%
!! AAAAAAAAGAAGAATTACAC+TGG - chr1_1:65689761-65689780 None:intergenic 20.0%
!! TAGAAGAAAATGCATTAATT+AGG - chr1_1:65689991-65690010 None:intergenic 20.0%
!!! TATTATAATGGATTGAAACA+AGG + chr1_1:65690279-65690298 Msa0036850:intron 20.0%
!! AGTATAGAATATATTCTCAA+CGG - chr1_1:65690317-65690336 None:intergenic 20.0%
!! AATATATTCTATACTCTTGT+AGG + chr1_1:65690322-65690341 Msa0036850:intron 20.0%
!!! TATCATTTTAGTTTTCAAGA+AGG - chr1_1:65690566-65690585 None:intergenic 20.0%
!!! TATCATTTTAGTTTTCAAGA+AGG - chr1_1:65690566-65690585 None:intergenic 20.0%
!! GTGTTTAATTAAAAACTAGA+GGG - chr1_1:65690852-65690871 None:intergenic 20.0%
!! AGTGTTTAATTAAAAACTAG+AGG - chr1_1:65690853-65690872 None:intergenic 20.0%
!!! TCGCTTTGAATAAAAATTAA+GGG - chr1_1:65690881-65690900 None:intergenic 20.0%
!!! GGTAATGTAACATTTAATTT+TGG - chr1_1:65691474-65691493 None:intergenic 20.0%
!!! CTTGTATTAATTTGATATGA+AGG - chr1_1:65691578-65691597 None:intergenic 20.0%
!! GTATACATAAGTCAATAAAT+TGG - chr1_1:65691888-65691907 None:intergenic 20.0%
!! GAAAACAAAGAATTTCAAAA+TGG - chr1_1:65692159-65692178 None:intergenic 20.0%
!!! AACTTAAAGTATTCTTTCAA+AGG + chr1_1:65692525-65692544 Msa0036850:intron 20.0%
!!! ACTTAAAGTATTCTTTCAAA+GGG + chr1_1:65692526-65692545 Msa0036850:intron 20.0%
!! TACATAGATATAACAAACAT+AGG - chr1_1:65692575-65692594 None:intergenic 20.0%
!!! TTTAGTTTTTCTTCTTCTTT+TGG + chr1_1:65693102-65693121 Msa0036850:intron 20.0%
!!! TTAGTTTTTCTTCTTCTTTT+GGG + chr1_1:65693103-65693122 Msa0036850:intron 20.0%
!! AATAATGTATATCCATATCT+CGG - chr1_1:65693309-65693328 None:intergenic 20.0%
!! ATTATTCATGCATTTGATAT+GGG + chr1_1:65693323-65693342 Msa0036850:intron 20.0%
!!! ATATGGGGTATTTTTTTTAT+TGG + chr1_1:65693339-65693358 Msa0036850:intron 20.0%
!! ATAAAATAAAGGAACACAAA+GGG - chr1_1:65693511-65693530 None:intergenic 20.0%
!! AATAAAATAAAGGAACACAA+AGG - chr1_1:65693512-65693531 None:intergenic 20.0%
!!! ATGTAGTTTTAAAATTTCTC+AGG - chr1_1:65693937-65693956 None:intergenic 20.0%
!!! AGAAATTTTAAAACTACATC+AGG + chr1_1:65693938-65693957 Msa0036850:intron 20.0%
!!! AGAAAATTGTTATTATGGTT+TGG + chr1_1:65694325-65694344 Msa0036850:intron 20.0%
!!! CACACAAATATTTTACAATT+TGG - chr1_1:65694996-65695015 None:intergenic 20.0%
!! AAGTTAAATTAACTCGAAAA+GGG - chr1_1:65695104-65695123 None:intergenic 20.0%
! GAAATTGAGAGAAAAATAGA+GGG - chr1_1:65688948-65688967 None:intergenic 25.0%
! AGAAATTGAGAGAAAAATAG+AGG - chr1_1:65688949-65688968 None:intergenic 25.0%
! AACAAATTCGAATCTTACTT+TGG + chr1_1:65689094-65689113 Msa0036850:CDS 25.0%
! GTTTCAATTTCAACCTAAAA+TGG + chr1_1:65689170-65689189 Msa0036850:intron 25.0%
!! AACAAAAGTTAACCCATTTT+AGG - chr1_1:65689186-65689205 None:intergenic 25.0%
!!! ATTTTGATGTAGATTGTTGT+GGG + chr1_1:65689239-65689258 Msa0036850:intron 25.0%
! GTAGTAATTAAATCTCTTAG+TGG + chr1_1:65689314-65689333 Msa0036850:intron 25.0%
! ATAAACTGATTATCCAAACA+GGG - chr1_1:65689363-65689382 None:intergenic 25.0%
! AATAAACTGATTATCCAAAC+AGG - chr1_1:65689364-65689383 None:intergenic 25.0%
! AAACAACTGAACACAATTAA+GGG - chr1_1:65689614-65689633 None:intergenic 25.0%
! AAAACAACTGAACACAATTA+AGG - chr1_1:65689615-65689634 None:intergenic 25.0%
!! GAATTTTATAGTCATTTGCA+AGG + chr1_1:65689692-65689711 Msa0036850:intron 25.0%
!!! TATCCAGATATGTTTTTGAT+GGG + chr1_1:65689864-65689883 Msa0036850:intron 25.0%
! GAGATATCTTGTATTAAATC+AGG + chr1_1:65690118-65690137 Msa0036850:intron 25.0%
!!! AAAAGACTTTTAAGACTCAT+GGG + chr1_1:65690371-65690390 Msa0036850:CDS 25.0%
! GCTATTTAAGAAAACCTAAA+GGG - chr1_1:65690820-65690839 None:intergenic 25.0%
!! TGCTATTTAAGAAAACCTAA+AGG - chr1_1:65690821-65690840 None:intergenic 25.0%
! CTTTGAATAAAAATTAAGGG+AGG - chr1_1:65690878-65690897 None:intergenic 25.0%
!! GTCGCTTTGAATAAAAATTA+AGG - chr1_1:65690882-65690901 None:intergenic 25.0%
! AGTGTTTAGTTAAAAAGTAG+AGG + chr1_1:65691398-65691417 Msa0036850:intron 25.0%
! GTGTTTAGTTAAAAAGTAGA+GGG + chr1_1:65691399-65691418 Msa0036850:intron 25.0%
! TGTTTAGTTAAAAAGTAGAG+GGG + chr1_1:65691400-65691419 Msa0036850:intron 25.0%
!! ATATCTCATGTTTCAGATTT+TGG + chr1_1:65691840-65691859 Msa0036850:intron 25.0%
!! ATTGACTTATGTATACTTTC+TGG + chr1_1:65691892-65691911 Msa0036850:CDS 25.0%
! CATTAAAGATCCAAATATAC+AGG - chr1_1:65692253-65692272 None:intergenic 25.0%
! TGTAAAATGTGTCATATAAG+TGG - chr1_1:65692282-65692301 None:intergenic 25.0%
!! ATGAAGTACTTAATCTTAAG+TGG + chr1_1:65692463-65692482 Msa0036850:CDS 25.0%
! ATAGTTATTACTTCTTCATC+TGG - chr1_1:65692495-65692514 None:intergenic 25.0%
!!! AATTTTTTGGCAAGATAATC+AGG + chr1_1:65692597-65692616 Msa0036850:intron 25.0%
!!! ACATTTCTAGTAAATGAGAA+TGG + chr1_1:65692651-65692670 Msa0036850:CDS 25.0%
!!! CATTTCTAGTAAATGAGAAT+GGG + chr1_1:65692652-65692671 Msa0036850:CDS 25.0%
! CTTAAAAAATGATTCCAATC+TGG - chr1_1:65692923-65692942 None:intergenic 25.0%
! TTTGAATGTTTAACACATAG+TGG - chr1_1:65693015-65693034 None:intergenic 25.0%
!! ACATTCAAAATTGTTGTTGA+AGG + chr1_1:65693026-65693045 Msa0036850:intron 25.0%
!! ATAATTCATGATCTAGTTTC+AGG - chr1_1:65693143-65693162 None:intergenic 25.0%
! AACATTATGAAAACTATGCA+AGG - chr1_1:65693171-65693190 None:intergenic 25.0%
! CATTATTCATGCATTTGATA+TGG + chr1_1:65693322-65693341 Msa0036850:intron 25.0%
! TTATTCATGCATTTGATATG+GGG + chr1_1:65693324-65693343 Msa0036850:intron 25.0%
! TAAAATAAAGGAACACAAAG+GGG - chr1_1:65693510-65693529 None:intergenic 25.0%
!!! TCAATTTTTTTTCTCAGATG+TGG - chr1_1:65693563-65693582 None:intergenic 25.0%
! TTCCTTTAGCATAAGTATAT+AGG + chr1_1:65694049-65694068 Msa0036850:intron 25.0%
!!! AAACTTTTAAGAAGTCTCAT+TGG + chr1_1:65694099-65694118 Msa0036850:intron 25.0%
! ATAAAGTAGAAATGAAAAGG+AGG - chr1_1:65694260-65694279 None:intergenic 25.0%
!! TTTTCTGTAATAGATTGAAC+AGG - chr1_1:65694311-65694330 None:intergenic 25.0%
!!! TATCAATTTGTTTTCATGGT+AGG - chr1_1:65694426-65694445 None:intergenic 25.0%
! AAAAAGAAACTAATCCTACA+AGG + chr1_1:65694498-65694517 Msa0036850:intron 25.0%
! AATTATCCTAATTACCTTGT+AGG - chr1_1:65694515-65694534 None:intergenic 25.0%
! AAAACAGTAACATATTATGC+AGG - chr1_1:65694652-65694671 None:intergenic 25.0%
!! TGCATAATATGTTACTGTTT+TGG + chr1_1:65694651-65694670 Msa0036850:intron 25.0%
! GTAGAATCATAGATGTTAAT+AGG - chr1_1:65694904-65694923 None:intergenic 25.0%
! CAAGTTAAATTAACTCGAAA+AGG - chr1_1:65695105-65695124 None:intergenic 25.0%
AATTCTCATTCAAACAACGA+TGG + chr1_1:65688899-65688918 Msa0036850:exon 30.0%
ATTCTCATTCAAACAACGAT+GGG + chr1_1:65688900-65688919 Msa0036850:exon 30.0%
!! TTGTTCTCCTTCATTGATTT+GGG - chr1_1:65689079-65689098 None:intergenic 30.0%
! TTTGTTCTCCTTCATTGATT+TGG - chr1_1:65689080-65689099 None:intergenic 30.0%
ATTTACCAGTTTCTTGTAAG+TGG + chr1_1:65689148-65689167 Msa0036850:intron 30.0%
!! GATTTTGATGTAGATTGTTG+TGG + chr1_1:65689238-65689257 Msa0036850:intron 30.0%
TCCAAGATAGCTTATGAAAA+CGG - chr1_1:65689474-65689493 None:intergenic 30.0%
TTTCATAAGTTCTTCCAAAC+AGG + chr1_1:65689537-65689556 Msa0036850:intron 30.0%
CAAAACGACTTATTCTCATA+TGG - chr1_1:65689809-65689828 None:intergenic 30.0%
!! GTATCCAGATATGTTTTTGA+TGG + chr1_1:65689863-65689882 Msa0036850:intron 30.0%
AGAATCAAGAGCTGAAAAAA+CGG + chr1_1:65689903-65689922 Msa0036850:CDS 30.0%
!! CTGAAAAAACGGTATTTTTG+CGG + chr1_1:65689914-65689933 Msa0036850:intron 30.0%
!! TGAAAAAACGGTATTTTTGC+GGG + chr1_1:65689915-65689934 Msa0036850:intron 30.0%
!!! AATGGATTGAAACAAGGTTT+TGG + chr1_1:65690285-65690304 Msa0036850:intron 30.0%
!!! CAAAAGACTTTTAAGACTCA+TGG + chr1_1:65690370-65690389 Msa0036850:CDS 30.0%
!!! CATTTTAGTTTTCAAGAAGG+TGG - chr1_1:65690563-65690582 None:intergenic 30.0%
ATTTAAGAAAACCTAAAGGG+AGG - chr1_1:65690817-65690836 None:intergenic 30.0%
CTAACGATGTTACATAACAA+TGG - chr1_1:65690913-65690932 None:intergenic 30.0%
TAATATACCACAGTCTAGTA+TGG - chr1_1:65691004-65691023 None:intergenic 30.0%
TTTGATGAGATACGAAAAGT+AGG + chr1_1:65691183-65691202 Msa0036850:intron 30.0%
! TGCTATTTAAGAAGACCTTA+AGG + chr1_1:65691430-65691449 Msa0036850:intron 30.0%
GCTATTTAAGAAGACCTTAA+GGG + chr1_1:65691431-65691450 Msa0036850:intron 30.0%
ATTAGATGGCGAAGAAATTT+AGG - chr1_1:65691706-65691725 None:intergenic 30.0%
TAAATTTCTTCGCCATCTAA+TGG + chr1_1:65691705-65691724 Msa0036850:CDS 30.0%
TTCAAAGAAGATTCCAGTAA+TGG + chr1_1:65691735-65691754 Msa0036850:CDS 30.0%
!! ATACATTTTGAAAGCAGTCA+AGG - chr1_1:65691787-65691806 None:intergenic 30.0%
TTGACTGCTTTCAAAATGTA+TGG + chr1_1:65691786-65691805 Msa0036850:intron 30.0%
TGACTGCTTTCAAAATGTAT+GGG + chr1_1:65691787-65691806 Msa0036850:intron 30.0%
TAAGTCAATAAATTGGTCCA+TGG - chr1_1:65691881-65691900 None:intergenic 30.0%
! TGTTTAGAGTTGAGTTTCAT+TGG + chr1_1:65692716-65692735 Msa0036850:intron 30.0%
! GTTTAGAGTTGAGTTTCATT+GGG + chr1_1:65692717-65692736 Msa0036850:intron 30.0%
GTATTTCCAGAAAGAAAGTT+AGG - chr1_1:65692901-65692920 None:intergenic 30.0%
! AACATTTATGGTCAGACTTT+TGG + chr1_1:65693069-65693088 Msa0036850:intron 30.0%
AAGAAAAACTAAATCACAGC+AGG - chr1_1:65693095-65693114 None:intergenic 30.0%
TAGTTTCAGGAAGACAAATA+CGG - chr1_1:65693130-65693149 None:intergenic 30.0%
CAATTTAATGCGACTTATCA+TGG - chr1_1:65693253-65693272 None:intergenic 30.0%
AACGTTAAGACAAACATTGT+TGG + chr1_1:65693374-65693393 Msa0036850:intron 30.0%
ACGTTAAGACAAACATTGTT+GGG + chr1_1:65693375-65693394 Msa0036850:intron 30.0%
!! ATTGAAAACACTGATTTGTG+TGG + chr1_1:65693413-65693432 Msa0036850:intron 30.0%
ATTTGTTCACTAACTGGATT+TGG + chr1_1:65693466-65693485 Msa0036850:intron 30.0%
AAAATAAAGGAACACAAAGG+GGG - chr1_1:65693509-65693528 None:intergenic 30.0%
!!! TTTTTTTTCTCAGATGTGGA+AGG - chr1_1:65693559-65693578 None:intergenic 30.0%
! AAAATTGAAGTACCAGAAAC+AGG + chr1_1:65693575-65693594 Msa0036850:intron 30.0%
TTGGTAAAAATTCCTGTTTC+TGG - chr1_1:65693590-65693609 None:intergenic 30.0%
! ATTTTGCTACACTTAATGAC+AGG + chr1_1:65693645-65693664 Msa0036850:intron 30.0%
TTGGAACACAAACTATAGAT+CGG - chr1_1:65693778-65693797 None:intergenic 30.0%
AGACAAATTATGCATTAGCA+TGG - chr1_1:65693878-65693897 None:intergenic 30.0%
AGCCTATATACTTATGCTAA+AGG - chr1_1:65694054-65694073 None:intergenic 30.0%
TTGTTTCAAGCCTAATCAAT+GGG - chr1_1:65694146-65694165 None:intergenic 30.0%
! GAAACAAGTTTCCATTGATT+AGG + chr1_1:65694159-65694178 Msa0036850:intron 30.0%
! GTTTGGTATGATTGATGATT+TGG + chr1_1:65694342-65694361 Msa0036850:intron 30.0%
ACTAATCCTACAAGGTAATT+AGG + chr1_1:65694506-65694525 Msa0036850:intron 30.0%
!!! ATGTACTCTTTTTTCTTGAC+AGG + chr1_1:65694696-65694715 Msa0036850:intron 30.0%
TGAATGATGCTAAAGCTAAA+GGG + chr1_1:65694728-65694747 Msa0036850:CDS 30.0%
CGGTAAGAAGAAAAAATAGT+TGG + chr1_1:65694777-65694796 Msa0036850:exon 30.0%
AGTTGGATTTGTATCTTAGA+TGG + chr1_1:65694794-65694813 Msa0036850:exon 30.0%
GTTGGATTTGTATCTTAGAT+GGG + chr1_1:65694795-65694814 Msa0036850:exon 30.0%
AGATGTTAATAGGTGCAAAA+GGG - chr1_1:65694894-65694913 None:intergenic 30.0%
TAGATGTTAATAGGTGCAAA+AGG - chr1_1:65694895-65694914 None:intergenic 30.0%
CAAAAAACCAAAGAAAAGAG+AGG - chr1_1:65694926-65694945 None:intergenic 30.0%
!!! TTTCTTTGGTTTTTTGCAGT+TGG + chr1_1:65694930-65694949 Msa0036850:intron 30.0%
GTTTGAATGAGAATTTGCAG+AGG - chr1_1:65688894-65688913 None:intergenic 35.0%
TCAAACAACGATGGGTATTA+AGG + chr1_1:65688908-65688927 Msa0036850:exon 35.0%
TAATGCTCCCAAATCAATGA+AGG + chr1_1:65689069-65689088 Msa0036850:CDS 35.0%
TAGCATCAACAGCAATCTTA+CGG - chr1_1:65689120-65689139 None:intergenic 35.0%
TGAAACCACTTACAAGAAAC+TGG - chr1_1:65689156-65689175 None:intergenic 35.0%
! GAAATGTTGACTAATGAAGC+TGG + chr1_1:65689275-65689294 Msa0036850:CDS 35.0%
AGATAAGCTTAATCCCTGTT+TGG + chr1_1:65689347-65689366 Msa0036850:intron 35.0%
TCAAATAACCTGATCCAAAC+AGG + chr1_1:65689588-65689607 Msa0036850:intron 35.0%
! GCATTGGTAAAAATCGACAA+GGG - chr1_1:65689841-65689860 None:intergenic 35.0%
!! AGCATTGGTAAAAATCGACA+AGG - chr1_1:65689842-65689861 None:intergenic 35.0%
CTTCCCATCAAAAACATATC+TGG - chr1_1:65689870-65689889 None:intergenic 35.0%
!! GAAAAAACGGTATTTTTGCG+GGG + chr1_1:65689916-65689935 Msa0036850:intron 35.0%
! GAGGTATATGCATAGTTTGT+TGG + chr1_1:65690070-65690089 Msa0036850:intron 35.0%
AAATCAGGATATTCATCCCT+TGG + chr1_1:65690133-65690152 Msa0036850:intron 35.0%
! CTGATCTTTGTTGTCATTTC+AGG + chr1_1:65690156-65690175 Msa0036850:intron 35.0%
TGTACAATGAGTTCACCATT+TGG + chr1_1:65690443-65690462 Msa0036850:intron 35.0%
! AATTTGAAGCCTTAGCCAAA+TGG - chr1_1:65690461-65690480 None:intergenic 35.0%
! AATCCTTTTCATACAGACCA+TGG + chr1_1:65690602-65690621 Msa0036850:intron 35.0%
TTTCCATGGTCTGTATGAAA+AGG - chr1_1:65690608-65690627 None:intergenic 35.0%
! TCCTTTTCAAACACACTTCA+TGG + chr1_1:65690756-65690775 Msa0036850:intron 35.0%
TCCATGAAGTGTGTTTGAAA+AGG - chr1_1:65690760-65690779 None:intergenic 35.0%
ACGATGTTACATAACAATGG+AGG - chr1_1:65690910-65690929 None:intergenic 35.0%
AAAATATCTCATGGAGTGTG+AGG - chr1_1:65690969-65690988 None:intergenic 35.0%
! ACTCCATGAGATATTTTCTC+TGG + chr1_1:65690972-65690991 Msa0036850:intron 35.0%
CAACCAGAGAAAATATCTCA+TGG - chr1_1:65690978-65690997 None:intergenic 35.0%
! GAAGGAAATAGCTTTTCACT+TGG + chr1_1:65691124-65691143 Msa0036850:intron 35.0%
TTGGAGATAGACATTCGTTT+AGG + chr1_1:65691143-65691162 Msa0036850:intron 35.0%
ATAGAAGGTAACAGGAAGAA+TGG - chr1_1:65691279-65691298 None:intergenic 35.0%
TTCTTCCTGTTACCTTCTAT+TGG + chr1_1:65691279-65691298 Msa0036850:intron 35.0%
GAATGAAAACCACCAATAGA+AGG - chr1_1:65691294-65691313 None:intergenic 35.0%
ATTTAAGAAGACCTTAAGGG+AGG + chr1_1:65691434-65691453 Msa0036850:intron 35.0%
TATTATACAGGTGTATGCTG+TGG + chr1_1:65691645-65691664 Msa0036850:intron 35.0%
TTGAACTAGGATCCATTAGA+TGG - chr1_1:65691720-65691739 None:intergenic 35.0%
ACTGGAATCTTCTTTGAACT+AGG - chr1_1:65691733-65691752 None:intergenic 35.0%
AATGGAATTTGACGTTGCAA+AGG + chr1_1:65691753-65691772 Msa0036850:CDS 35.0%
TTGAAAGCAGTCAAGGATAA+CGG - chr1_1:65691780-65691799 None:intergenic 35.0%
! TCTCATGTTTCAGATTTTGG+AGG + chr1_1:65691843-65691862 Msa0036850:intron 35.0%
TAATAATCAATGTGTGCCAC+AGG + chr1_1:65692037-65692056 Msa0036850:intron 35.0%
!!! TTTTTTCAATAGAGCCGTGT+TGG - chr1_1:65692096-65692115 None:intergenic 35.0%
CGGCTCTATTGAAAAAATAC+TGG + chr1_1:65692099-65692118 Msa0036850:CDS 35.0%
TGGAAAACATAAGCAAAGAG+AGG + chr1_1:65692119-65692138 Msa0036850:CDS 35.0%
!!! TTTTCAAGTGCATGCAATAG+AGG + chr1_1:65692174-65692193 Msa0036850:intron 35.0%
TGCATTACGAATCAGATATC+TGG + chr1_1:65692227-65692246 Msa0036850:intron 35.0%
AGATATCTGGCCTGTATATT+TGG + chr1_1:65692240-65692259 Msa0036850:intron 35.0%
GTTATTACTTCTTCATCTGG+AGG - chr1_1:65692492-65692511 None:intergenic 35.0%
AGTATTCTTTCAAAGGGACA+AGG + chr1_1:65692532-65692551 Msa0036850:intron 35.0%
TTGCATGTTGTCTTTCTTAC+AGG + chr1_1:65692620-65692639 Msa0036850:intron 35.0%
TGCATGTTGTCTTTCTTACA+GGG + chr1_1:65692621-65692640 Msa0036850:intron 35.0%
! TCTTTCTGGAAATACCAGAT+TGG + chr1_1:65692906-65692925 Msa0036850:intron 35.0%
ATCCATCAGTACCTATCAAA+CGG + chr1_1:65692953-65692972 Msa0036850:CDS 35.0%
GAATGTTTAACACATAGTGG+AGG - chr1_1:65693012-65693031 None:intergenic 35.0%
ATTCTCCACCAGAACATTTA+TGG + chr1_1:65693057-65693076 Msa0036850:intron 35.0%
AAGTCTGACCATAAATGTTC+TGG - chr1_1:65693068-65693087 None:intergenic 35.0%
AAGAGGATGAAAATTAAGCG+AGG - chr1_1:65693195-65693214 None:intergenic 35.0%
CATCGATATGACATCATAAG+AGG - chr1_1:65693212-65693231 None:intergenic 35.0%
!!! GCATTTTAAAGTCCGAGATA+TGG + chr1_1:65693294-65693313 Msa0036850:intron 35.0%
! GTGAACAAATGATGGGATAA+AGG - chr1_1:65693456-65693475 None:intergenic 35.0%
CCAGTTAGTGAACAAATGAT+GGG - chr1_1:65693463-65693482 None:intergenic 35.0%
TCCAGTTAGTGAACAAATGA+TGG - chr1_1:65693464-65693483 None:intergenic 35.0%
AAATAAAGGAACACAAAGGG+GGG - chr1_1:65693508-65693527 None:intergenic 35.0%
GACATCTTATGATCAATTGC+CGG - chr1_1:65693700-65693719 None:intergenic 35.0%
! TTAGCATGGATTGACATTGA+AGG - chr1_1:65693864-65693883 None:intergenic 35.0%
TAAAACTACATCAGGCCTTA+CGG + chr1_1:65693946-65693965 Msa0036850:intron 35.0%
!! TAACTCTGAAATGTTGTTCC+TGG + chr1_1:65694015-65694034 Msa0036850:intron 35.0%
AAAGGAACTAAAGTGAAACC+AGG - chr1_1:65694036-65694055 None:intergenic 35.0%
AGCATAAGTATATAGGCTTC+TGG + chr1_1:65694056-65694075 Msa0036850:intron 35.0%
! GAAACAAGTTCCCATTGATT+AGG + chr1_1:65694133-65694152 Msa0036850:intron 35.0%
CTTGTTTCAAGCCTAATCAA+TGG - chr1_1:65694147-65694166 None:intergenic 35.0%
! TGTTTGAGATTGAGGCTTAT+TGG - chr1_1:65694287-65694306 None:intergenic 35.0%
ATATGAGAAGTAATCTCCAG+TGG + chr1_1:65694460-65694479 Msa0036850:intron 35.0%
! TGAGTATCTAAAACTACCAC+TGG - chr1_1:65694479-65694498 None:intergenic 35.0%
AGGCTTCTTGTTAGAAGATA+TGG - chr1_1:65694549-65694568 None:intergenic 35.0%
!! TATCCGCGTGTATTTTGAAA+AGG - chr1_1:65694585-65694604 None:intergenic 35.0%
!!! TGTTACTGTTTTGGTTCTGT+AGG + chr1_1:65694660-65694679 Msa0036850:intron 35.0%
! AAAGAGTACATGTCAAACCA+TGG - chr1_1:65694687-65694706 None:intergenic 35.0%
!! TTAGCTTTAGCATCATTCAC+TGG - chr1_1:65694727-65694746 None:intergenic 35.0%
GTGAATGATGCTAAAGCTAA+AGG + chr1_1:65694727-65694746 Msa0036850:CDS 35.0%
AGGGAGTAACAAGAAAACTA+AGG + chr1_1:65694747-65694766 Msa0036850:CDS 35.0%
AGTAACAAGAAAACTAAGGC+CGG + chr1_1:65694751-65694770 Msa0036850:CDS 35.0%
AAACATCTACAACACTAACC+TGG - chr1_1:65694841-65694860 None:intergenic 35.0%
! GATTCTACCTCTCTTTTCTT+TGG + chr1_1:65694916-65694935 Msa0036850:intron 35.0%
TTGTGATACAATGCTTCATG+TGG + chr1_1:65695060-65695079 Msa0036850:three_prime_UTR 35.0%
TGACGGCAGAAAGATGAATA+AGG - chr1_1:65688853-65688872 None:intergenic 40.0%
TAATGTGAACTGGAGTGTGA+CGG - chr1_1:65688870-65688889 None:intergenic 40.0%
TTGCAGAGGATAATGTGAAC+TGG - chr1_1:65688880-65688899 None:intergenic 40.0%
! GGGTTTAACGAAGCTTTTAG+CGG + chr1_1:65689045-65689064 Msa0036850:intron 40.0%
TAGATTGTTGTGGGAAGAAG+TGG + chr1_1:65689248-65689267 Msa0036850:intron 40.0%
ATGAAGCTGGTGAAGTTACT+AGG + chr1_1:65689288-65689307 Msa0036850:intron 40.0%
!! GCCGTTTTCATAAGCTATCT+TGG + chr1_1:65689470-65689489 Msa0036850:intron 40.0%
AACACAATTAAGGGCCTGTT+TGG - chr1_1:65689605-65689624 None:intergenic 40.0%
ATTTGCAAGGAATGTTTGCG+CGG + chr1_1:65689705-65689724 Msa0036850:intron 40.0%
! ACAATCAGACTTCTAGAAGC+CGG + chr1_1:65689728-65689747 Msa0036850:CDS 40.0%
ACATATCTGGATACGAGCAT+TGG - chr1_1:65689857-65689876 None:intergenic 40.0%
AGCTCTTGATTCTTCATCTC+CGG - chr1_1:65689896-65689915 None:intergenic 40.0%
! TTGTTGGCGACTTTTCTATG+TGG + chr1_1:65690086-65690105 Msa0036850:intron 40.0%
TGACAACAAAGATCAGCCAA+GGG - chr1_1:65690152-65690171 None:intergenic 40.0%
ATGACAACAAAGATCAGCCA+AGG - chr1_1:65690153-65690172 None:intergenic 40.0%
ATTCAGTAAACGGACAGTGA+AGG + chr1_1:65690204-65690223 Msa0036850:CDS 40.0%
ATGAGTTCACCATTTGGCTA+AGG + chr1_1:65690449-65690468 Msa0036850:intron 40.0%
TCTTCCACTCTTTGCAAAAC+TGG + chr1_1:65690662-65690681 Msa0036850:intron 40.0%
CACTCTTTGCAAAACTGGAA+CGG + chr1_1:65690667-65690686 Msa0036850:intron 40.0%
AATTACACTCACCTCCCTTT+AGG + chr1_1:65690803-65690822 Msa0036850:intron 40.0%
! GTTGATTCCATACTAGACTG+TGG + chr1_1:65690994-65691013 Msa0036850:intron 40.0%
CACAATAATTCGCCATTGCT+TGG - chr1_1:65691075-65691094 None:intergenic 40.0%
CAATGGCGAATTATTGTGAC+CGG + chr1_1:65691077-65691096 Msa0036850:intron 40.0%
AATTATTGTGACCGGTGGTA+TGG + chr1_1:65691085-65691104 Msa0036850:intron 40.0%
! GGTGTCGTATGAACAAATGA+AGG + chr1_1:65691106-65691125 Msa0036850:intron 40.0%
GAGATAGACATTCGTTTAGG+TGG + chr1_1:65691146-65691165 Msa0036850:intron 40.0%
TTCCTGTTACCTTCTATTGG+TGG + chr1_1:65691282-65691301 Msa0036850:intron 40.0%
AACCACCAATAGAAGGTAAC+AGG - chr1_1:65691287-65691306 None:intergenic 40.0%
! GTGGTTTTCATTCGCAATGT+GGG + chr1_1:65691301-65691320 Msa0036850:intron 40.0%
! TTTTCATTCGCAATGTGGGT+GGG + chr1_1:65691305-65691324 Msa0036850:intron 40.0%
! GTGCTTGAGAGTATAACCAA+TGG + chr1_1:65691333-65691352 Msa0036850:intron 40.0%
! TGAGAGTATAACCAATGGTG+CGG + chr1_1:65691338-65691357 Msa0036850:intron 40.0%
AATTACACTCACCTCCCTTA+AGG - chr1_1:65691448-65691467 None:intergenic 40.0%
GACATGGATTCCTTAACGTT+TGG + chr1_1:65691676-65691695 Msa0036850:CDS 40.0%
TTTAGGAGCTCCAAACGTTA+AGG - chr1_1:65691689-65691708 None:intergenic 40.0%
GCAACGTCAAATTCCATTAC+TGG - chr1_1:65691751-65691770 None:intergenic 40.0%
GATTACTGTGACAACATTCG+AGG + chr1_1:65691919-65691938 Msa0036850:CDS 40.0%
!! TTTGTCCCGCTTTTATCCAA+CGG + chr1_1:65691947-65691966 Msa0036850:intron 40.0%
!! TTCAAGTTTACCACCGATTC+AGG + chr1_1:65692367-65692386 Msa0036850:intron 40.0%
!! ACGACTTTTTAAAGAGCCAG+AGG + chr1_1:65692428-65692447 Msa0036850:CDS 40.0%
TCATCATCAGTTATGACCTC+TGG - chr1_1:65692447-65692466 None:intergenic 40.0%
GCATGTTGTCTTTCTTACAG+GGG + chr1_1:65692622-65692641 Msa0036850:intron 40.0%
! AGAATGGGTTCAACAGTGAT+AGG + chr1_1:65692667-65692686 Msa0036850:CDS 40.0%
! GAATGGGTTCAACAGTGATA+GGG + chr1_1:65692668-65692687 Msa0036850:CDS 40.0%
GCAAAGAACAAGTCATCACA+AGG + chr1_1:65692814-65692833 Msa0036850:CDS 40.0%
GCACGACAAGACAATAGAAA+AGG - chr1_1:65692879-65692898 None:intergenic 40.0%
!! TTCCGTTTGATAGGTACTGA+TGG - chr1_1:65692958-65692977 None:intergenic 40.0%
ATCAGTACCTATCAAACGGA+AGG + chr1_1:65692957-65692976 Msa0036850:CDS 40.0%
GTACATACCTTCCGTTTGAT+AGG - chr1_1:65692967-65692986 None:intergenic 40.0%
! CAAAATTGTTGTTGAAGGCC+TGG + chr1_1:65693031-65693050 Msa0036850:intron 40.0%
TCTGACCATAAATGTTCTGG+TGG - chr1_1:65693065-65693084 None:intergenic 40.0%
CCCATCATTTGTTCACTAAC+TGG + chr1_1:65693460-65693479 Msa0036850:intron 40.0%
CGTGCTTAGATCTTTCAAAC+CGG + chr1_1:65693678-65693697 Msa0036850:intron 40.0%
TGCGAATTTCTAACTGCTCA+AGG + chr1_1:65693725-65693744 Msa0036850:intron 40.0%
AGACAATGGCATGGAAAGAT+TGG - chr1_1:65693797-65693816 None:intergenic 40.0%
ATTGACATTGAAGGTTCACC+AGG - chr1_1:65693855-65693874 None:intergenic 40.0%
AGTCATCTCTGCCTAATCAA+TGG - chr1_1:65694173-65694192 None:intergenic 40.0%
ATTGATTAGGCAGAGATGAC+TGG + chr1_1:65694172-65694191 Msa0036850:intron 40.0%
! GAACAGGTTGTTTGAGATTG+AGG - chr1_1:65694295-65694314 None:intergenic 40.0%
! GAAAAGGCTGTTGCTTCATT+AGG - chr1_1:65694569-65694588 None:intergenic 40.0%
! CAGCCTTTTCAAAATACACG+CGG + chr1_1:65694579-65694598 Msa0036850:intron 40.0%
!!! TTTTTTCTTCTTACCGCCAC+CGG - chr1_1:65694773-65694792 None:intergenic 40.0%
GAGTCATTTACATGTTGACC+AGG + chr1_1:65694820-65694839 Msa0036850:three_prime_UTR 40.0%
GGACAGTCACAAAAATTAGC+TGG - chr1_1:65694873-65694892 None:intergenic 40.0%
!!! GTTTTTTGCAGTTGGCATGA+AGG + chr1_1:65694938-65694957 Msa0036850:intron 40.0%
AGTTCTTCCAAACAGGCTCA+CGG + chr1_1:65689544-65689563 Msa0036850:intron 45.0%
ATAAGTTCCGTGAGCCTGTT+TGG - chr1_1:65689554-65689573 None:intergenic 45.0%
ATTAAGGGCCTGTTTGGATC+AGG - chr1_1:65689599-65689618 None:intergenic 45.0%
! CAATCAGACTTCTAGAAGCC+GGG + chr1_1:65689729-65689748 Msa0036850:CDS 45.0%
!! GAATTACACTGGCTTCATCC+CGG - chr1_1:65689750-65689769 None:intergenic 45.0%
!! TGTTTTTGATGGGAAGCCAC+CGG + chr1_1:65689874-65689893 Msa0036850:CDS 45.0%
TCTTGATTCTTCATCTCCGG+TGG - chr1_1:65689893-65689912 None:intergenic 45.0%
GTCATTTCAGGCTGACAACA+AGG + chr1_1:65690168-65690187 Msa0036850:intron 45.0%
GCTAAGGCTTCAAATTCTGC+AGG + chr1_1:65690465-65690484 Msa0036850:intron 45.0%
TGCACTTTGCAAAGCTGGAA+AGG + chr1_1:65690516-65690535 Msa0036850:CDS 45.0%
! CGTTCCAGTTTTGCAAAGAG+TGG - chr1_1:65690669-65690688 None:intergenic 45.0%
GAGCTTAAAGCTCCAAGCAA+TGG + chr1_1:65691060-65691079 Msa0036850:intron 45.0%
TTCATACGACACCATACCAC+CGG - chr1_1:65691099-65691118 None:intergenic 45.0%
CGAAAAGTAGGTTTGCGAAG+AGG + chr1_1:65691195-65691214 Msa0036850:intron 45.0%
! GGTGGTTTTCATTCGCAATG+TGG + chr1_1:65691300-65691319 Msa0036850:intron 45.0%
! GTTTTCATTCGCAATGTGGG+TGG + chr1_1:65691304-65691323 Msa0036850:intron 45.0%
TTTCATTCGCAATGTGGGTG+GGG + chr1_1:65691306-65691325 Msa0036850:intron 45.0%
GACAATAATAGCCGCACCAT+TGG - chr1_1:65691352-65691371 None:intergenic 45.0%
!! TTGTCCCGCTTTTATCCAAC+GGG + chr1_1:65691948-65691967 Msa0036850:intron 45.0%
TAGCACCCGTTGGATAAAAG+CGG - chr1_1:65691956-65691975 None:intergenic 45.0%
TCAATGTGTGCCACAGGTAT+TGG + chr1_1:65692043-65692062 Msa0036850:intron 45.0%
CAATGTGTGCCACAGGTATT+GGG + chr1_1:65692044-65692063 Msa0036850:intron 45.0%
! AATGTGTGCCACAGGTATTG+GGG + chr1_1:65692045-65692064 Msa0036850:intron 45.0%
CAACAGTGATAGGGTGACAA+AGG + chr1_1:65692677-65692696 Msa0036850:CDS 45.0%
AGAACAAGTCATCACAAGGC+CGG + chr1_1:65692818-65692837 Msa0036850:CDS 45.0%
GTCGTGCCTAACTTTCTTTC+TGG + chr1_1:65692892-65692911 Msa0036850:intron 45.0%
!! GGTACTGATGGATTTGCAGT+TGG - chr1_1:65692946-65692965 None:intergenic 45.0%
AGTGGAGGTGATAGATGTAG+TGG - chr1_1:65692997-65693016 None:intergenic 45.0%
!! ACACTGATTTGTGTGGCAAC+TGG + chr1_1:65693420-65693439 Msa0036850:intron 45.0%
GCAGTTAGAAATTCGCAGAG+AGG - chr1_1:65693722-65693741 None:intergenic 45.0%
TTCTAACTGCTCAAGGTCCA+TGG + chr1_1:65693732-65693751 Msa0036850:intron 45.0%
! TGCTCAAGGTCCATGGTTTT+TGG + chr1_1:65693739-65693758 Msa0036850:intron 45.0%
TATAGATCGGCATGCTCAAC+TGG - chr1_1:65693765-65693784 None:intergenic 45.0%
CTTTCCATGCCATTGTCTAG+AGG + chr1_1:65693799-65693818 Msa0036850:intron 45.0%
AAGCAGACACCTCTAGACAA+TGG - chr1_1:65693811-65693830 None:intergenic 45.0%
!! TTGTCTAGAGGTGTCTGCTT+TGG + chr1_1:65693811-65693830 Msa0036850:intron 45.0%
!!! GTTTTGGTTCTGTAGGTCCA+TGG + chr1_1:65694667-65694686 Msa0036850:intron 45.0%
AACAAGAAAACTAAGGCCGG+TGG + chr1_1:65694754-65694773 Msa0036850:CDS 45.0%
! TTTTGCAGTTGGCATGAAGG+AGG + chr1_1:65694941-65694960 Msa0036850:intron 45.0%
TTTGCAGTTGGCATGAAGGA+GGG + chr1_1:65694942-65694961 Msa0036850:intron 45.0%
!!! TTCAATTTTTAATATTATAA+TGG + chr1_1:65690267-65690286 Msa0036850:intron 5.0%
TGCAACGTCACCTCAACAAC+AGG - chr1_1:65690401-65690420 None:intergenic 50.0%
CATTGAGCCTCTGCTTCTGA+GGG - chr1_1:65690493-65690512 None:intergenic 50.0%
ACATTGAGCCTCTGCTTCTG+AGG - chr1_1:65690494-65690513 None:intergenic 50.0%
TGTGCTGCACTTTGCAAAGC+TGG + chr1_1:65690511-65690530 Msa0036850:CDS 50.0%
ATCTCATGGAGTGTGAGGCA+GGG - chr1_1:65690964-65690983 None:intergenic 50.0%
TATCTCATGGAGTGTGAGGC+AGG - chr1_1:65690965-65690984 None:intergenic 50.0%
GTTAACATGTGGGACGAGCT+TGG + chr1_1:65691030-65691049 Msa0036850:intron 50.0%
TGGCGAATTATTGTGACCGG+TGG + chr1_1:65691080-65691099 Msa0036850:intron 50.0%
! TGCTGTGGCTTCTGAAGACA+TGG + chr1_1:65691660-65691679 Msa0036850:CDS 50.0%
GGAGGAGCTAGATTTGACCA+TGG + chr1_1:65691861-65691880 Msa0036850:CDS 50.0%
AGCACCCGTTGGATAAAAGC+GGG - chr1_1:65691955-65691974 None:intergenic 50.0%
! GCTTTTATCCAACGGGTGCT+AGG + chr1_1:65691955-65691974 Msa0036850:intron 50.0%
!! ATGTGTGCCACAGGTATTGG+GGG + chr1_1:65692046-65692065 Msa0036850:intron 50.0%
CTGAAGCTCATACGCCAACA+CGG + chr1_1:65692079-65692098 Msa0036850:CDS 50.0%
!! TTACCACCGATTCAGGTACC+AGG + chr1_1:65692374-65692393 Msa0036850:intron 50.0%
CTGGTACCTGGTACCTGAAT+CGG - chr1_1:65692383-65692402 None:intergenic 50.0%
GGTACCAGGTACCAGATGAT+TGG + chr1_1:65692388-65692407 Msa0036850:intron 50.0%
! ACCAGATGATTGGCCGTATC+AGG + chr1_1:65692398-65692417 Msa0036850:CDS 50.0%
TCCTGATACGGCCAATCATC+TGG - chr1_1:65692402-65692421 None:intergenic 50.0%
! AGATGATTGGCCGTATCAGG+AGG + chr1_1:65692401-65692420 Msa0036850:CDS 50.0%
GTTCTGGTGGAGAATTTGCC+AGG - chr1_1:65693052-65693071 None:intergenic 50.0%
GCTCAACTGGCCAAAAACCA+TGG - chr1_1:65693752-65693771 None:intergenic 50.0%
GACACCTCTAGACAATGGCA+TGG - chr1_1:65693806-65693825 None:intergenic 50.0%
TGCCTGAAGCTGAATAGACC+TGG + chr1_1:65693834-65693853 Msa0036850:intron 50.0%
CACCAGGTCTATTCAGCTTC+AGG - chr1_1:65693839-65693858 None:intergenic 50.0%
AAGAAAACTAAGGCCGGTGG+CGG + chr1_1:65694757-65694776 Msa0036850:CDS 50.0%
! CACCTTTACAGGAGAGTGCG+CGG + chr1_1:65688806-65688825 Msa0036850:five_prime_UTR 55.0%
! ACCTTTACAGGAGAGTGCGC+GGG + chr1_1:65688807-65688826 Msa0036850:five_prime_UTR 55.0%
CAGTCTCTCAAAGAGAGCCG+AGG + chr1_1:65690021-65690040 Msa0036850:intron 55.0%
TAGAGCTTCCGTCAAACCCG+CGG - chr1_1:65690050-65690069 None:intergenic 55.0%
! GGGTTTGACGGAAGCTCTAG+AGG + chr1_1:65690051-65690070 Msa0036850:CDS 55.0%
!! CATGGGAGTGCCTGTTGTTG+AGG + chr1_1:65690388-65690407 Msa0036850:CDS 55.0%
TGTGAGGCAGGGGAAAATGG+AGG - chr1_1:65690953-65690972 None:intergenic 55.0%
GAGTGTGAGGCAGGGGAAAA+TGG - chr1_1:65690956-65690975 None:intergenic 55.0%
TCTCATGGAGTGTGAGGCAG+GGG - chr1_1:65690963-65690982 None:intergenic 55.0%
AGCTTGAACCTAGCACCCGT+TGG - chr1_1:65691966-65691985 None:intergenic 55.0%
!! TGTGTGCCACAGGTATTGGG+GGG + chr1_1:65692047-65692066 Msa0036850:intron 55.0%
TGTCATCCCCCCAATACCTG+TGG - chr1_1:65692056-65692075 None:intergenic 55.0%
GTACCTGGTACCTGAATCGG+TGG - chr1_1:65692380-65692399 None:intergenic 55.0%
ACGGCCAATCATCTGGTACC+TGG - chr1_1:65692395-65692414 None:intergenic 55.0%
AGTCGTCGAGCCTCCTGATA+CGG - chr1_1:65692414-65692433 None:intergenic 55.0%
CTTACGGTGCTCGACTGCTA+GGG + chr1_1:65693962-65693981 Msa0036850:intron 55.0%
TCCCGCGCACTCTCCTGTAA+AGG - chr1_1:65688811-65688830 None:intergenic 60.0%
AAAGAGAGCCGAGGCTACCG+CGG + chr1_1:65690030-65690049 Msa0036850:CDS 60.0%
! CCTAGCAGTCGAGCACCGTA+AGG - chr1_1:65693964-65693983 None:intergenic 60.0%
CCTTACGGTGCTCGACTGCT+AGG + chr1_1:65693961-65693980 Msa0036850:intron 60.0%
AAGAGAGCCGAGGCTACCGC+GGG + chr1_1:65690031-65690050 Msa0036850:CDS 65.0%
CGTCAAACCCGCGGTAGCCT+CGG - chr1_1:65690041-65690060 None:intergenic 65.0%
CGAGGCTACCGCGGGTTTGA+CGG + chr1_1:65690039-65690058 Msa0036850:CDS 65.0%
GCAGGCACCCTCAGAAGCAG+AGG + chr1_1:65690483-65690502 Msa0036850:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65688799 65695138 65688799 ID=Msa0036850;Name=Msa0036850
chr1_1 mRNA 65688799 65695138 65688799 ID=Msa0036850-mRNA-1;Parent=Msa0036850;Name=Msa0036850-mRNA-1;_AED=0.22;_eAED=0.22;_QI=119|0.88|0.83|1|0.94|0.88|18|236|383
chr1_1 exon 65688799 65688929 65688799 ID=Msa0036850-mRNA-1:exon:21155;Parent=Msa0036850-mRNA-1
chr1_1 exon 65689046 65689162 65689046 ID=Msa0036850-mRNA-1:exon:21156;Parent=Msa0036850-mRNA-1
chr1_1 exon 65689251 65689296 65689251 ID=Msa0036850-mRNA-1:exon:21157;Parent=Msa0036850-mRNA-1
chr1_1 exon 65689714 65689762 65689714 ID=Msa0036850-mRNA-1:exon:21158;Parent=Msa0036850-mRNA-1
chr1_1 exon 65689871 65689924 65689871 ID=Msa0036850-mRNA-1:exon:21159;Parent=Msa0036850-mRNA-1
chr1_1 exon 65690024 65690072 65690024 ID=Msa0036850-mRNA-1:exon:21160;Parent=Msa0036850-mRNA-1
chr1_1 exon 65690178 65690225 65690178 ID=Msa0036850-mRNA-1:exon:21161;Parent=Msa0036850-mRNA-1
chr1_1 exon 65690344 65690409 65690344 ID=Msa0036850-mRNA-1:exon:21162;Parent=Msa0036850-mRNA-1
chr1_1 exon 65690487 65690558 65690487 ID=Msa0036850-mRNA-1:exon:21163;Parent=Msa0036850-mRNA-1
chr1_1 exon 65691655 65691774 65691655 ID=Msa0036850-mRNA-1:exon:21164;Parent=Msa0036850-mRNA-1
chr1_1 exon 65691856 65691940 65691856 ID=Msa0036850-mRNA-1:exon:21165;Parent=Msa0036850-mRNA-1
chr1_1 exon 65692059 65692140 65692059 ID=Msa0036850-mRNA-1:exon:21166;Parent=Msa0036850-mRNA-1
chr1_1 exon 65692389 65692503 65692389 ID=Msa0036850-mRNA-1:exon:21167;Parent=Msa0036850-mRNA-1
chr1_1 exon 65692642 65692698 65692642 ID=Msa0036850-mRNA-1:exon:21168;Parent=Msa0036850-mRNA-1
chr1_1 exon 65692793 65692839 65692793 ID=Msa0036850-mRNA-1:exon:21169;Parent=Msa0036850-mRNA-1
chr1_1 exon 65692924 65692978 65692924 ID=Msa0036850-mRNA-1:exon:21170;Parent=Msa0036850-mRNA-1
chr1_1 exon 65694718 65694841 65694718 ID=Msa0036850-mRNA-1:exon:21171;Parent=Msa0036850-mRNA-1
chr1_1 exon 65694949 65695138 65694949 ID=Msa0036850-mRNA-1:exon:21172;Parent=Msa0036850-mRNA-1
chr1_1 five_prime_UTR 65688799 65688917 65688799 ID=Msa0036850-mRNA-1:five_prime_utr;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65688918 65688929 65688918 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65689046 65689162 65689046 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65689251 65689296 65689251 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65689714 65689762 65689714 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65689871 65689924 65689871 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65690024 65690072 65690024 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65690178 65690225 65690178 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65690344 65690409 65690344 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65690487 65690558 65690487 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65691655 65691774 65691655 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65691856 65691940 65691856 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65692059 65692140 65692059 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65692389 65692503 65692389 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65692642 65692698 65692642 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65692793 65692839 65692793 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65692924 65692978 65692924 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 CDS 65694718 65694795 65694718 ID=Msa0036850-mRNA-1:cds;Parent=Msa0036850-mRNA-1
chr1_1 three_prime_UTR 65694796 65694841 65694796 ID=Msa0036850-mRNA-1:three_prime_utr;Parent=Msa0036850-mRNA-1
chr1_1 three_prime_UTR 65694949 65695138 65694949 ID=Msa0036850-mRNA-1:three_prime_utr;Parent=Msa0036850-mRNA-1
Gene Sequence

>Msa0036850

ATGGGTATTAAGGGTTTAACGAAGCTTTTAGCGGATAATGCTCCCAAATCAATGAAGGAGAACAAATTCGAATCTTACTTTGGCCGTAAGATTGCTGTTGATGCTAGTATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAACTGAAATGTTGACTAATGAAGCTGGAATGTTTGCGCGGACAATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGAGATGAAGAATCAAGAGCTGAAAAAACGTCTCTCAAAGAGAGCCGAGGCTACCGCGGGTTTGACGGAAGCTCTAGAGGCTGACAACAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAACATAATGACGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGCAAGTTCAAATCTGCTGTGTGTGTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGTTCAAAGAAGATTCCAGTAATGGAATTTGACGTTGCAAAGATTTTGGAGGAGCTAGATTTGACCATGGACCAATTTATTGACTTATGTATACTTTCTGGATGTGATTACTGTGACAACATTCGAGGTATTGGGGGGATGACAGCTCTGAAGCTCATACGCCAACACGGCTCTATTGAAAAAATACTGGAAAACATAAGCAAAGAGAGGTACCAGGTACCAGATGATTGGCCGTATCAGGAGGCTCGACGACTTTTTAAAGAGCCAGAGGTCATAACTGATGATGAAGTACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCAGTACCTATCAAACGGAAGGAAACTCCAGTGAATGATGCTAAAGCTAAAGGGAGTAACAAGAAAACTAAGGCCGGTGGCGGTAAGAAGAAAAAATAG

Protein sequence

>Msa0036850

MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSNLLCVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVITDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAKAKGSNKKTKAGGGKKKK*