Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242520 | KEH37161.1 | 94.444 | 108 | 6 | 0 | 116 | 223 | 33 | 140 | 2.14e-68 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242520 | A0A072V6A6 | 94.444 | 108 | 6 | 0 | 116 | 223 | 33 | 140 | 1.02e-68 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030380 | Msa0242520 | 0.802404 | 5.702567e-49 | -8.615850e-47 |
| Msa0173740 | Msa0242520 | 0.803161 | 3.977843e-49 | -8.615850e-47 |
| Msa0173820 | Msa0242520 | 0.804733 | 1.874685e-49 | -8.615850e-47 |
| Msa0200010 | Msa0242520 | 0.890608 | 8.449797e-74 | -8.615850e-47 |
| Msa0242520 | Msa0280730 | 0.894248 | 2.947305e-75 | -8.615850e-47 |
| Msa0242520 | Msa0328210 | 0.800022 | 1.750996e-48 | -8.615850e-47 |
| Msa0242520 | Msa0429290 | 0.801848 | 7.419636e-49 | -8.615850e-47 |
| Msa0242520 | Msa0690250 | 0.802981 | 4.334835e-49 | -8.615850e-47 |
| Msa0242520 | Msa0846030 | 0.813216 | 2.864332e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242520 | MtrunA17_Chr2g0294771 | 95.604 | 91 | 4 | 0 | 133 | 223 | 1 | 91 | 6.54e-62 | 188 |
| Msa0242520 | MtrunA17_Chr5g0417751 | 45.946 | 111 | 49 | 3 | 116 | 219 | 1 | 107 | 4.85e-20 | 82.8 |
| Msa0242520 | MtrunA17_Chr2g0312591 | 63.793 | 58 | 18 | 1 | 154 | 211 | 36 | 90 | 6.08e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242520 | AT4G16146.1 | 72.368 | 76 | 21 | 0 | 148 | 223 | 18 | 93 | 3.63e-35 | 120 |
| Msa0242520 | AT1G69510.3 | 60.526 | 76 | 27 | 1 | 148 | 223 | 26 | 98 | 1.10e-21 | 87.4 |
| Msa0242520 | AT1G69510.2 | 60.526 | 76 | 27 | 1 | 148 | 223 | 26 | 98 | 1.10e-21 | 87.4 |
| Msa0242520 | AT1G69510.1 | 60.526 | 76 | 27 | 1 | 148 | 223 | 26 | 98 | 1.10e-21 | 87.4 |
| Msa0242520 | AT5G64130.1 | 51.190 | 84 | 36 | 2 | 130 | 211 | 7 | 87 | 5.40e-18 | 77.0 |
| Msa0242520 | AT5G64130.3 | 39.450 | 109 | 36 | 3 | 130 | 211 | 7 | 112 | 5.63e-13 | 64.3 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGAGTCCGTCCTAAATT+TGG | 0.252184 | 2_2:-18744683 | None:intergenic |
| ATCTTCTCTTCGCTTGATTT+TGG | 0.271225 | 2_2:+18741827 | Msa0242520:CDS |
| GTTATGTACCTCAACGTTAT+TGG | 0.287248 | 2_2:-18742044 | None:intergenic |
| AAAATATGTACCTGTAGTTT+TGG | 0.291948 | 2_2:-18744148 | None:intergenic |
| GATGTGCATGCAGGTCTTCT+TGG | 0.315613 | 2_2:-18744309 | None:intergenic |
| ATGTGCATGCAGGTCTTCTT+GGG | 0.321512 | 2_2:-18744308 | None:intergenic |
| AGAGAAGATGCTATAGTAAA+TGG | 0.328525 | 2_2:-18741813 | None:intergenic |
| CCAAAACGTGGGGTTGAACT+TGG | 0.335529 | 2_2:+18744641 | Msa0242520:three_prime_UTR |
| AGAAGACCTGCATGCACATC+TGG | 0.388554 | 2_2:+18744312 | Msa0242520:CDS |
| CCAAGTTCAACCCCACGTTT+TGG | 0.389622 | 2_2:-18744641 | None:intergenic |
| AACAACATAGAAAATAAAAT+AGG | 0.392062 | 2_2:-18741752 | None:intergenic |
| AAAAGCATCAAGTGAACTAA+TGG | 0.409581 | 2_2:-18744549 | None:intergenic |
| AATGTGGTAGATCCAAATTT+AGG | 0.416458 | 2_2:+18744671 | Msa0242520:three_prime_UTR |
| ATGTAATATATCTTAGCATT+TGG | 0.417547 | 2_2:+18741571 | Msa0242520:CDS |
| ACATCTGTGGGCAAGAAGTA+TGG | 0.427721 | 2_2:+18743766 | Msa0242520:CDS |
| TACTCTCCCTGCAAAACAAT+TGG | 0.431697 | 2_2:-18744445 | None:intergenic |
| CTAGGAAAGAAGCTACAAAA+TGG | 0.435486 | 2_2:-18741519 | None:intergenic |
| GACCCTGCGGCCAAAACTAC+AGG | 0.475768 | 2_2:+18744138 | Msa0242520:CDS |
| AAATCATATATATGAATCAC+TGG | 0.499705 | 2_2:+18744342 | Msa0242520:three_prime_UTR |
| TAATCTCTACAGCAAGGTGC+TGG | 0.502471 | 2_2:+18744085 | Msa0242520:intron |
| CAAAAGCAAGATGAAAGATA+AGG | 0.509914 | 2_2:-18741877 | None:intergenic |
| CAAAACGTGGGGTTGAACTT+GGG | 0.522746 | 2_2:+18744642 | Msa0242520:three_prime_UTR |
| GAAGAGAGGTTTGAGTGAGA+AGG | 0.524064 | 2_2:-18741617 | None:intergenic |
| AAATTATAGTCAACATCTGT+GGG | 0.528268 | 2_2:+18743754 | Msa0242520:intron |
| TGAACTTGGGATTTGAAATG+TGG | 0.551105 | 2_2:+18744655 | Msa0242520:three_prime_UTR |
| AGGCTTACATTGGATATCAA+AGG | 0.559362 | 2_2:-18743811 | None:intergenic |
| ATTACCTTGTGGTGGGAGCA+AGG | 0.568180 | 2_2:-18741697 | None:intergenic |
| AATCAACCAGATGTGCATGC+AGG | 0.569567 | 2_2:-18744318 | None:intergenic |
| TAAATTATAGTCAACATCTG+TGG | 0.573145 | 2_2:+18743753 | Msa0242520:intron |
| TGTTGAATAGGTAAAGGAGA+TGG | 0.580212 | 2_2:+18741991 | Msa0242520:intron |
| CCATCTATTTGACCAAAACG+TGG | 0.581829 | 2_2:+18744629 | Msa0242520:three_prime_UTR |
| TGTTGATAATTACCTTGTGG+TGG | 0.586982 | 2_2:-18741705 | None:intergenic |
| AGCAGACTGGGCATTATGCA+AGG | 0.588087 | 2_2:+18743982 | Msa0242520:CDS |
| AAAGTAGAGACAATGAAGAG+AGG | 0.589022 | 2_2:-18741631 | None:intergenic |
| CATCTATTTGACCAAAACGT+GGG | 0.591595 | 2_2:+18744630 | Msa0242520:three_prime_UTR |
| CTGTGGGCAAGAAGTATGGT+GGG | 0.597221 | 2_2:+18743770 | Msa0242520:CDS |
| TAATTATATTATACGAGGAG+AGG | 0.605739 | 2_2:-18741542 | None:intergenic |
| ATATTATACGAGGAGAGGCT+AGG | 0.606715 | 2_2:-18741537 | None:intergenic |
| TGTGCATGCAGGTCTTCTTG+GGG | 0.609417 | 2_2:-18744307 | None:intergenic |
| TCTGTGGGCAAGAAGTATGG+TGG | 0.617985 | 2_2:+18743769 | Msa0242520:CDS |
| GTTGATAATTACCTTGTGGT+GGG | 0.633369 | 2_2:-18741704 | None:intergenic |
| TCTACCTTGCTCCCACCACA+AGG | 0.640342 | 2_2:+18741693 | Msa0242520:CDS |
| TATAATAATTATATTATACG+AGG | 0.643160 | 2_2:-18741547 | None:intergenic |
| TGGTAGATCCAAATTTAGGA+CGG | 0.646366 | 2_2:+18744675 | Msa0242520:three_prime_UTR |
| ATATATCTTAGCATTTGGTG+TGG | 0.651457 | 2_2:+18741576 | Msa0242520:CDS |
| ATCTATTTGACCAAAACGTG+GGG | 0.659449 | 2_2:+18744631 | Msa0242520:three_prime_UTR |
| GTGCATGCAGGTCTTCTTGG+GGG | 0.664744 | 2_2:-18744306 | None:intergenic |
| TTATGCTGCCAATAACGTTG+AGG | 0.670547 | 2_2:+18742036 | Msa0242520:CDS |
| TGATGTTGATAATTACCTTG+TGG | 0.710613 | 2_2:-18741708 | None:intergenic |
| CAGCAGCCGTAGAGACCCTG+CGG | 0.737276 | 2_2:+18744125 | Msa0242520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTATATTATACG+AGG | - | chr2_2:18741550-18741569 | None:intergenic | 10.0% |
| !! | ATATTTAATGTGAAAATATA+AGG | - | chr2_2:18742152-18742171 | None:intergenic | 10.0% |
| !! | CAAAAAAATAAATAATAAGT+AGG | - | chr2_2:18742684-18742703 | None:intergenic | 10.0% |
| !!! | CTTATTATTTATTTTTTTGA+AGG | + | chr2_2:18742685-18742704 | Msa0242520:intron | 10.0% |
| !!! | ATAAAGCATTTTTAAAATTA+AGG | + | chr2_2:18742749-18742768 | Msa0242520:intron | 10.0% |
| !!! | ATTTTTAAAATTAAGGAAAA+AGG | + | chr2_2:18742756-18742775 | Msa0242520:intron | 10.0% |
| !!! | TTTTTAACACAAAAAAAAAA+TGG | - | chr2_2:18743935-18743954 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTGTGTTAAAA+AGG | + | chr2_2:18743934-18743953 | Msa0242520:intron | 10.0% |
| !!! | AATATAGATATATAATTTGT+TGG | + | chr2_2:18744058-18744077 | Msa0242520:intron | 10.0% |
| !! | TAAAAATAAAAATAAAACAG+AGG | - | chr2_2:18744246-18744265 | None:intergenic | 10.0% |
| !!! | TACTTTTTATCTTTTTTCTT+TGG | + | chr2_2:18741648-18741667 | Msa0242520:CDS | 15.0% |
| !! | AACAACATAGAAAATAAAAT+AGG | - | chr2_2:18741755-18741774 | None:intergenic | 15.0% |
| !! | ATTGATTAATCTTCATTAAA+TGG | + | chr2_2:18741951-18741970 | Msa0242520:intron | 15.0% |
| !! | TGAAAAATATTTCATGTATA+TGG | - | chr2_2:18742122-18742141 | None:intergenic | 15.0% |
| !! | TTTAGTTGTACAATATATAA+TGG | - | chr2_2:18742179-18742198 | None:intergenic | 15.0% |
| !!! | TAAATGGTAATGAAAATTAA+AGG | + | chr2_2:18742280-18742299 | Msa0242520:intron | 15.0% |
| !! | ATCCTTATGTAAAAAAATTA+TGG | - | chr2_2:18743501-18743520 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAATAACAGTCAA+TGG | - | chr2_2:18743603-18743622 | None:intergenic | 15.0% |
| !! | ATTCAGTATTATAAAAGTTA+GGG | - | chr2_2:18743686-18743705 | None:intergenic | 15.0% |
| !! | TATTCAGTATTATAAAAGTT+AGG | - | chr2_2:18743687-18743706 | None:intergenic | 15.0% |
| !! | AAATCAAAAAGAAATTGAAA+TGG | - | chr2_2:18744599-18744618 | None:intergenic | 15.0% |
| !!! | ACTTCAAATAAATTTTACTT+AGG | + | chr2_2:18744715-18744734 | Msa0242520:three_prime_UTR | 15.0% |
| !! | ATGTAATATATCTTAGCATT+TGG | + | chr2_2:18741571-18741590 | Msa0242520:CDS | 20.0% |
| !! | CACTTATATGCTATAAAAAT+TGG | + | chr2_2:18741777-18741796 | Msa0242520:CDS | 20.0% |
| !! | TATGCTATAAAAATTGGATA+TGG | + | chr2_2:18741783-18741802 | Msa0242520:CDS | 20.0% |
| !!! | TTTGATTTGTTTTGTTGAAT+AGG | + | chr2_2:18741979-18741998 | Msa0242520:intron | 20.0% |
| !!! | AAATCCTCTAAAAAAAATGT+AGG | - | chr2_2:18742600-18742619 | None:intergenic | 20.0% |
| !! | GTAGGTGTAAATTAATATTA+AGG | - | chr2_2:18742666-18742685 | None:intergenic | 20.0% |
| !!! | TTTTAGCATGAAGATATTTT+TGG | + | chr2_2:18742787-18742806 | Msa0242520:intron | 20.0% |
| !!! | TTTAGCATGAAGATATTTTT+GGG | + | chr2_2:18742788-18742807 | Msa0242520:intron | 20.0% |
| !! | TTATATATAGAAAGAAAGCA+AGG | - | chr2_2:18742999-18743018 | None:intergenic | 20.0% |
| !! | ATAATTTCTTATGTGTAGTA+GGG | - | chr2_2:18743059-18743078 | None:intergenic | 20.0% |
| !! | TGATTAAATCAAAGTAGATT+AGG | + | chr2_2:18743141-18743160 | Msa0242520:intron | 20.0% |
| !! | TATGGTAAAAGAATTAAGAA+CGG | + | chr2_2:18743263-18743282 | Msa0242520:intron | 20.0% |
| !!! | AATGTTACACAGTTTTTTTA+GGG | - | chr2_2:18743476-18743495 | None:intergenic | 20.0% |
| !!! | CTCCATAATTTTTTTACATA+AGG | + | chr2_2:18743496-18743515 | Msa0242520:intron | 20.0% |
| !!! | GTTCTTTTATTTCTTTTTGT+TGG | + | chr2_2:18743713-18743732 | Msa0242520:intron | 20.0% |
| !!! | TGTTGGAAATAACTTTTTTT+TGG | + | chr2_2:18743730-18743749 | Msa0242520:intron | 20.0% |
| !!! | TAAATGTTGTTTTTCATCAT+AGG | - | chr2_2:18743834-18743853 | None:intergenic | 20.0% |
| !! | TGTTAAAAAGGATAATGAAA+GGG | + | chr2_2:18743946-18743965 | Msa0242520:intron | 20.0% |
| !! | AAATCATATATATGAATCAC+TGG | + | chr2_2:18744342-18744361 | Msa0242520:three_prime_UTR | 20.0% |
| !! | AAATTTCATTATGTTCTAGT+TGG | + | chr2_2:18744512-18744531 | Msa0242520:intron | 20.0% |
| !!! | TCAATTTCTTTTTGATTTCA+AGG | + | chr2_2:18744601-18744620 | Msa0242520:three_prime_UTR | 20.0% |
| ! | TAATTATATTATACGAGGAG+AGG | - | chr2_2:18741545-18741564 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTGAATAGGTAA+AGG | + | chr2_2:18741985-18742004 | Msa0242520:intron | 25.0% |
| ! | TCTTGATTGCAATGTTTAAA+TGG | + | chr2_2:18742264-18742283 | Msa0242520:intron | 25.0% |
| !!! | TAGGCTTTCTGAAATTATAT+TGG | + | chr2_2:18742427-18742446 | Msa0242520:intron | 25.0% |
| ! | TCATTTATTTATTGGACACA+TGG | - | chr2_2:18742543-18742562 | None:intergenic | 25.0% |
| !!! | ATGACCTACATTTTTTTTAG+AGG | + | chr2_2:18742593-18742612 | Msa0242520:intron | 25.0% |
| ! | TACAATGTACATGTGTATTT+AGG | - | chr2_2:18742628-18742647 | None:intergenic | 25.0% |
| ! | TTTCTAACCGACAATTTAAT+TGG | - | chr2_2:18742817-18742836 | None:intergenic | 25.0% |
| ! | AGAAAGCAAGGATTAATTAT+TGG | - | chr2_2:18742987-18743006 | None:intergenic | 25.0% |
| ! | CATAATTTCTTATGTGTAGT+AGG | - | chr2_2:18743060-18743079 | None:intergenic | 25.0% |
| ! | CTACTACACATAAGAAATTA+TGG | + | chr2_2:18743058-18743077 | Msa0242520:intron | 25.0% |
| ! | AAGTAGATTAGGTTCAAATT+AGG | + | chr2_2:18743152-18743171 | Msa0242520:intron | 25.0% |
| ! | TTCTCATTTGACTAATTCTA+GGG | - | chr2_2:18743182-18743201 | None:intergenic | 25.0% |
| ! | ATTCTCATTTGACTAATTCT+AGG | - | chr2_2:18743183-18743202 | None:intergenic | 25.0% |
| ! | ATGGTAAAAGAATTAAGAAC+GGG | + | chr2_2:18743264-18743283 | Msa0242520:intron | 25.0% |
| !! | TTGTCGTTTCAAAAAACAAA+AGG | + | chr2_2:18743349-18743368 | Msa0242520:intron | 25.0% |
| ! | AAGGTCAGTAAAAAATCATA+TGG | + | chr2_2:18743368-18743387 | Msa0242520:intron | 25.0% |
| ! | AGGTCAGTAAAAAATCATAT+GGG | + | chr2_2:18743369-18743388 | Msa0242520:intron | 25.0% |
| ! | AAGCAAATTAGTAGATCATA+AGG | + | chr2_2:18743416-18743435 | Msa0242520:intron | 25.0% |
| !!! | GAATGTTACACAGTTTTTTT+AGG | - | chr2_2:18743477-18743496 | None:intergenic | 25.0% |
| !! | ATCCAAATGCATTTTAAATG+AGG | + | chr2_2:18743519-18743538 | Msa0242520:intron | 25.0% |
| ! | TATCACATTTATTCAGTCAA+TGG | - | chr2_2:18743629-18743648 | None:intergenic | 25.0% |
| !! | ATAGTCTTGAATTTATCTTG+TGG | + | chr2_2:18743646-18743665 | Msa0242520:intron | 25.0% |
| ! | TAAATTATAGTCAACATCTG+TGG | + | chr2_2:18743753-18743772 | Msa0242520:intron | 25.0% |
| ! | AAATTATAGTCAACATCTGT+GGG | + | chr2_2:18743754-18743773 | Msa0242520:intron | 25.0% |
| !!! | ATATCAAAGGCTTTTTCTTT+GGG | - | chr2_2:18743801-18743820 | None:intergenic | 25.0% |
| ! | GTGTTAAAAAGGATAATGAA+AGG | + | chr2_2:18743945-18743964 | Msa0242520:intron | 25.0% |
| !! | AAAATATGTACCTGTAGTTT+TGG | - | chr2_2:18744151-18744170 | None:intergenic | 25.0% |
| ! | AAAATAAAACAGAGGAAAAG+TGG | - | chr2_2:18744238-18744257 | None:intergenic | 25.0% |
| ! | ATATATCTTAGCATTTGGTG+TGG | + | chr2_2:18741576-18741595 | Msa0242520:CDS | 30.0% |
| !! | TGATGTTGATAATTACCTTG+TGG | - | chr2_2:18741711-18741730 | None:intergenic | 30.0% |
| AGAGAAGATGCTATAGTAAA+TGG | - | chr2_2:18741816-18741835 | None:intergenic | 30.0% | |
| CAAAAGCAAGATGAAAGATA+AGG | - | chr2_2:18741880-18741899 | None:intergenic | 30.0% | |
| !! | TATCTTTCATCTTGCTTTTG+TGG | + | chr2_2:18741880-18741899 | Msa0242520:CDS | 30.0% |
| !! | ATCTTTCATCTTGCTTTTGT+GGG | + | chr2_2:18741881-18741900 | Msa0242520:CDS | 30.0% |
| ! | AAACAAAACAGATGAGTTGA+GGG | - | chr2_2:18742074-18742093 | None:intergenic | 30.0% |
| AAAACAAAACAGATGAGTTG+AGG | - | chr2_2:18742075-18742094 | None:intergenic | 30.0% | |
| ! | GATGAAAAAAAAGAGTACGT+TGG | - | chr2_2:18742356-18742375 | None:intergenic | 30.0% |
| ! | CAATTGAAGTACTAAGTACA+TGG | - | chr2_2:18742388-18742407 | None:intergenic | 30.0% |
| ! | TATATTGGTTGTCTAGTTTC+TGG | + | chr2_2:18742442-18742461 | Msa0242520:intron | 30.0% |
| ATACACATGTACATTGTAGA+AGG | + | chr2_2:18742630-18742649 | Msa0242520:intron | 30.0% | |
| TACACATGTACATTGTAGAA+GGG | + | chr2_2:18742631-18742650 | Msa0242520:intron | 30.0% | |
| TGGGAATCCAATTAAATTGT+CGG | + | chr2_2:18742807-18742826 | Msa0242520:intron | 30.0% | |
| TCAGTAAAAAATCATATGGG+TGG | + | chr2_2:18743372-18743391 | Msa0242520:intron | 30.0% | |
| CAGTAAAAAATCATATGGGT+GGG | + | chr2_2:18743373-18743392 | Msa0242520:intron | 30.0% | |
| ! | TGCCTCATTTAAAATGCATT+TGG | - | chr2_2:18743524-18743543 | None:intergenic | 30.0% |
| AGTCAATGGTTGTTATATAG+TGG | - | chr2_2:18743589-18743608 | None:intergenic | 30.0% | |
| TCTTGAATTTATCTTGTGGT+TGG | + | chr2_2:18743650-18743669 | Msa0242520:intron | 30.0% | |
| !! | GATATCAAAGGCTTTTTCTT+TGG | - | chr2_2:18743802-18743821 | None:intergenic | 30.0% |
| ! | TTTTCATCATAGGCTTACAT+TGG | - | chr2_2:18743824-18743843 | None:intergenic | 30.0% |
| !!! | ATTTTTTGATTCAGCAGACT+GGG | + | chr2_2:18743970-18743989 | Msa0242520:CDS | 30.0% |
| AGAGGAAAAGTGGATAAATA+AGG | - | chr2_2:18744228-18744247 | None:intergenic | 30.0% | |
| !! | AAAAGCATCAAGTGAACTAA+TGG | - | chr2_2:18744552-18744571 | None:intergenic | 30.0% |
| !! | CACTTGATGCTTTTGATTAT+TGG | + | chr2_2:18744558-18744577 | Msa0242520:three_prime_UTR | 30.0% |
| AATGTGGTAGATCCAAATTT+AGG | + | chr2_2:18744671-18744690 | Msa0242520:three_prime_UTR | 30.0% | |
| CTAGGAAAGAAGCTACAAAA+TGG | - | chr2_2:18741522-18741541 | None:intergenic | 35.0% | |
| AAAGTAGAGACAATGAAGAG+AGG | - | chr2_2:18741634-18741653 | None:intergenic | 35.0% | |
| !! | GTTGATAATTACCTTGTGGT+GGG | - | chr2_2:18741707-18741726 | None:intergenic | 35.0% |
| !! | TGTTGATAATTACCTTGTGG+TGG | - | chr2_2:18741708-18741727 | None:intergenic | 35.0% |
| ! | ATCTTCTCTTCGCTTGATTT+TGG | + | chr2_2:18741827-18741846 | Msa0242520:CDS | 35.0% |
| TGTTGAATAGGTAAAGGAGA+TGG | + | chr2_2:18741991-18742010 | Msa0242520:intron | 35.0% | |
| GTTATGTACCTCAACGTTAT+TGG | - | chr2_2:18742047-18742066 | None:intergenic | 35.0% | |
| !! | CATTTTAATCTCCTCTAACG+TGG | + | chr2_2:18742225-18742244 | Msa0242520:intron | 35.0% |
| TGTCTATCATACATGCATCT+AGG | + | chr2_2:18742408-18742427 | Msa0242520:intron | 35.0% | |
| TTGGACACATGGAAATGAAA+GGG | - | chr2_2:18742532-18742551 | None:intergenic | 35.0% | |
| ATTGGACACATGGAAATGAA+AGG | - | chr2_2:18742533-18742552 | None:intergenic | 35.0% | |
| ! | TTGTCGGTTAGAAAGTTCTA+AGG | + | chr2_2:18742823-18742842 | Msa0242520:intron | 35.0% |
| ! | TGTCGGTTAGAAAGTTCTAA+GGG | + | chr2_2:18742824-18742843 | Msa0242520:intron | 35.0% |
| TATGTTGTGACATCCTCATA+AGG | - | chr2_2:18742857-18742876 | None:intergenic | 35.0% | |
| CAAAACAAAACAAGCCTAAC+TGG | + | chr2_2:18742901-18742920 | Msa0242520:intron | 35.0% | |
| !! | ATCCCTTTTAAGTCACTCAA+AGG | + | chr2_2:18743217-18743236 | Msa0242520:intron | 35.0% |
| CTCCTTTGAGTGACTTAAAA+GGG | - | chr2_2:18743222-18743241 | None:intergenic | 35.0% | |
| TCTCCTTTGAGTGACTTAAA+AGG | - | chr2_2:18743223-18743242 | None:intergenic | 35.0% | |
| AAGGAGATACAAGAATGACT+TGG | + | chr2_2:18743236-18743255 | Msa0242520:intron | 35.0% | |
| AGGCTTACATTGGATATCAA+AGG | - | chr2_2:18743814-18743833 | None:intergenic | 35.0% | |
| !! | GAAAAAGCATTAGACTCTGT+TGG | - | chr2_2:18743913-18743932 | None:intergenic | 35.0% |
| !!! | CATTTTTTGATTCAGCAGAC+TGG | + | chr2_2:18743969-18743988 | Msa0242520:CDS | 35.0% |
| GGAATTTAATCTCTACAGCA+AGG | + | chr2_2:18744079-18744098 | Msa0242520:intron | 35.0% | |
| !! | TCATACACCAATTGTTTTGC+AGG | + | chr2_2:18744438-18744457 | Msa0242520:three_prime_UTR | 35.0% |
| !! | CATACACCAATTGTTTTGCA+GGG | + | chr2_2:18744439-18744458 | Msa0242520:three_prime_UTR | 35.0% |
| TAGATTCAACTATTGGCACA+AGG | + | chr2_2:18744466-18744485 | Msa0242520:intron | 35.0% | |
| CATCTATTTGACCAAAACGT+GGG | + | chr2_2:18744630-18744649 | Msa0242520:three_prime_UTR | 35.0% | |
| ATCTATTTGACCAAAACGTG+GGG | + | chr2_2:18744631-18744650 | Msa0242520:three_prime_UTR | 35.0% | |
| ! | TGAACTTGGGATTTGAAATG+TGG | + | chr2_2:18744655-18744674 | Msa0242520:three_prime_UTR | 35.0% |
| TGGTAGATCCAAATTTAGGA+CGG | + | chr2_2:18744675-18744694 | Msa0242520:three_prime_UTR | 35.0% | |
| ATATTATACGAGGAGAGGCT+AGG | - | chr2_2:18741540-18741559 | None:intergenic | 40.0% | |
| TTATGCTGCCAATAACGTTG+AGG | + | chr2_2:18742036-18742055 | Msa0242520:CDS | 40.0% | |
| ! | AAACAGATGAGTTGAGGGTT+AGG | - | chr2_2:18742069-18742088 | None:intergenic | 40.0% |
| GAATAAGATACGTGCACATG+TGG | + | chr2_2:18742304-18742323 | Msa0242520:intron | 40.0% | |
| GTACAAGTAACGTGCACAAT+TGG | - | chr2_2:18742334-18742353 | None:intergenic | 40.0% | |
| TGGACACATGGAAATGAAAG+GGG | - | chr2_2:18742531-18742550 | None:intergenic | 40.0% | |
| !! | GTCGGTTAGAAAGTTCTAAG+GGG | + | chr2_2:18742825-18742844 | Msa0242520:intron | 40.0% |
| TGTGACATCCTCATAAGGTA+GGG | - | chr2_2:18742852-18742871 | None:intergenic | 40.0% | |
| TTGTGACATCCTCATAAGGT+AGG | - | chr2_2:18742853-18742872 | None:intergenic | 40.0% | |
| GCTCATGTTTGGGAGAAATA+AGG | - | chr2_2:18742956-18742975 | None:intergenic | 40.0% | |
| TTCTTATGTGTAGTAGGGAG+AGG | - | chr2_2:18743054-18743073 | None:intergenic | 40.0% | |
| ! | GAGATACAAGAATGACTTGG+TGG | + | chr2_2:18743239-18743258 | Msa0242520:intron | 40.0% |
| TACTCTCCCTGCAAAACAAT+TGG | - | chr2_2:18744448-18744467 | None:intergenic | 40.0% | |
| GGGAGAGTAGATTCAACTAT+TGG | + | chr2_2:18744459-18744478 | Msa0242520:intron | 40.0% | |
| !! | CCACGTTTTGGTCAAATAGA+TGG | - | chr2_2:18744632-18744651 | None:intergenic | 40.0% |
| CCATCTATTTGACCAAAACG+TGG | + | chr2_2:18744629-18744648 | Msa0242520:three_prime_UTR | 40.0% | |
| GTAAGAGTCCGTCCTAAATT+TGG | - | chr2_2:18744686-18744705 | None:intergenic | 40.0% | |
| GAAGAGAGGTTTGAGTGAGA+AGG | - | chr2_2:18741620-18741639 | None:intergenic | 45.0% | |
| ACATTAGTTCGCCACGTTAG+AGG | - | chr2_2:18742239-18742258 | None:intergenic | 45.0% | |
| AAACAAGCCTAACTGGCTGT+AGG | + | chr2_2:18742908-18742927 | Msa0242520:intron | 45.0% | |
| AACAAGCCTAACTGGCTGTA+GGG | + | chr2_2:18742909-18742928 | Msa0242520:intron | 45.0% | |
| GGCATGAGAAGCTCATGTTT+GGG | - | chr2_2:18742966-18742985 | None:intergenic | 45.0% | |
| TGGCATGAGAAGCTCATGTT+TGG | - | chr2_2:18742967-18742986 | None:intergenic | 45.0% | |
| !! | CAAGAATGACTTGGTGGCTA+TGG | + | chr2_2:18743245-18743264 | Msa0242520:intron | 45.0% |
| ACATCTGTGGGCAAGAAGTA+TGG | + | chr2_2:18743766-18743785 | Msa0242520:CDS | 45.0% | |
| TAATCTCTACAGCAAGGTGC+TGG | + | chr2_2:18744085-18744104 | Msa0242520:intron | 45.0% | |
| ATGTGCATGCAGGTCTTCTT+GGG | - | chr2_2:18744311-18744330 | None:intergenic | 45.0% | |
| AATCAACCAGATGTGCATGC+AGG | - | chr2_2:18744321-18744340 | None:intergenic | 45.0% | |
| CAAAACGTGGGGTTGAACTT+GGG | + | chr2_2:18744642-18744661 | Msa0242520:three_prime_UTR | 45.0% | |
| !! | TTATAAAATCATTTATTTAT+TGG | - | chr2_2:18742551-18742570 | None:intergenic | 5.0% |
| !!! | TTATTATTTATTTTTTTGAA+GGG | + | chr2_2:18742686-18742705 | Msa0242520:intron | 5.0% |
| ! | ATTACCTTGTGGTGGGAGCA+AGG | - | chr2_2:18741700-18741719 | None:intergenic | 50.0% |
| TAAGGGGTCCCTACCTTATG+AGG | + | chr2_2:18742841-18742860 | Msa0242520:intron | 50.0% | |
| TGACAACCCTACAGCCAGTT+AGG | - | chr2_2:18742918-18742937 | None:intergenic | 50.0% | |
| ! | TCTGTGGGCAAGAAGTATGG+TGG | + | chr2_2:18743769-18743788 | Msa0242520:CDS | 50.0% |
| ! | CTGTGGGCAAGAAGTATGGT+GGG | + | chr2_2:18743770-18743789 | Msa0242520:CDS | 50.0% |
| AGCAGACTGGGCATTATGCA+AGG | + | chr2_2:18743982-18744001 | Msa0242520:CDS | 50.0% | |
| !!! | TACCTGTAGTTTTGGCCGCA+GGG | - | chr2_2:18744143-18744162 | None:intergenic | 50.0% |
| TGTGCATGCAGGTCTTCTTG+GGG | - | chr2_2:18744310-18744329 | None:intergenic | 50.0% | |
| GATGTGCATGCAGGTCTTCT+TGG | - | chr2_2:18744312-18744331 | None:intergenic | 50.0% | |
| AGAAGACCTGCATGCACATC+TGG | + | chr2_2:18744312-18744331 | Msa0242520:CDS | 50.0% | |
| ! | CCAAGTTCAACCCCACGTTT+TGG | - | chr2_2:18744644-18744663 | None:intergenic | 50.0% |
| CCAAAACGTGGGGTTGAACT+TGG | + | chr2_2:18744641-18744660 | Msa0242520:three_prime_UTR | 50.0% | |
| TCTACCTTGCTCCCACCACA+AGG | + | chr2_2:18741693-18741712 | Msa0242520:CDS | 55.0% | |
| ! | TTTTGGCCGCAGGGTCTCTA+CGG | - | chr2_2:18744134-18744153 | None:intergenic | 55.0% |
| !!! | GTACCTGTAGTTTTGGCCGC+AGG | - | chr2_2:18744144-18744163 | None:intergenic | 55.0% |
| GTGCATGCAGGTCTTCTTGG+GGG | - | chr2_2:18744309-18744328 | None:intergenic | 55.0% | |
| GACCCTGCGGCCAAAACTAC+AGG | + | chr2_2:18744138-18744157 | Msa0242520:CDS | 60.0% | |
| CAGCAGCCGTAGAGACCCTG+CGG | + | chr2_2:18744125-18744144 | Msa0242520:CDS | 65.0% | |
| CTTGGGGGAAGCTGCTGACG+TGG | - | chr2_2:18744294-18744313 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 18741516 | 18744739 | 18741516 | ID=Msa0242520;Name=Msa0242520 |
| chr2_2 | mRNA | 18741516 | 18744739 | 18741516 | ID=Msa0242520-mRNA-1;Parent=Msa0242520;Name=Msa0242520-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|1|0.85|1|0.83|0.71|7|317|223 |
| chr2_2 | exon | 18741516 | 18741902 | 18741516 | ID=Msa0242520-mRNA-1:exon:7670;Parent=Msa0242520-mRNA-1 |
| chr2_2 | exon | 18742001 | 18742057 | 18742001 | ID=Msa0242520-mRNA-1:exon:7671;Parent=Msa0242520-mRNA-1 |
| chr2_2 | exon | 18743763 | 18743825 | 18743763 | ID=Msa0242520-mRNA-1:exon:7672;Parent=Msa0242520-mRNA-1 |
| chr2_2 | exon | 18743956 | 18744003 | 18743956 | ID=Msa0242520-mRNA-1:exon:7673;Parent=Msa0242520-mRNA-1 |
| chr2_2 | exon | 18744097 | 18744159 | 18744097 | ID=Msa0242520-mRNA-1:exon:7674;Parent=Msa0242520-mRNA-1 |
| chr2_2 | exon | 18744285 | 18744460 | 18744285 | ID=Msa0242520-mRNA-1:exon:7675;Parent=Msa0242520-mRNA-1 |
| chr2_2 | exon | 18744545 | 18744739 | 18744545 | ID=Msa0242520-mRNA-1:exon:7676;Parent=Msa0242520-mRNA-1 |
| chr2_2 | CDS | 18741516 | 18741902 | 18741516 | ID=Msa0242520-mRNA-1:cds;Parent=Msa0242520-mRNA-1 |
| chr2_2 | CDS | 18742001 | 18742057 | 18742001 | ID=Msa0242520-mRNA-1:cds;Parent=Msa0242520-mRNA-1 |
| chr2_2 | CDS | 18743763 | 18743825 | 18743763 | ID=Msa0242520-mRNA-1:cds;Parent=Msa0242520-mRNA-1 |
| chr2_2 | CDS | 18743956 | 18744003 | 18743956 | ID=Msa0242520-mRNA-1:cds;Parent=Msa0242520-mRNA-1 |
| chr2_2 | CDS | 18744097 | 18744159 | 18744097 | ID=Msa0242520-mRNA-1:cds;Parent=Msa0242520-mRNA-1 |
| chr2_2 | CDS | 18744285 | 18744338 | 18744285 | ID=Msa0242520-mRNA-1:cds;Parent=Msa0242520-mRNA-1 |
| chr2_2 | three_prime_UTR | 18744339 | 18744460 | 18744339 | ID=Msa0242520-mRNA-1:three_prime_utr;Parent=Msa0242520-mRNA-1 |
| chr2_2 | three_prime_UTR | 18744545 | 18744739 | 18744545 | ID=Msa0242520-mRNA-1:three_prime_utr;Parent=Msa0242520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
