AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0429290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429290 MtrunA17_Chr3g0133161 88.732 284 0 1 1 284 1 252 0.0 500
Msa0429290 MtrunA17_Chr3g0132301 67.658 269 54 2 11 279 8 243 6.75e-129 366
Msa0429290 MtrunA17_Chr5g0426551 66.543 269 57 2 11 279 8 243 2.86e-128 365
Msa0429290 MtrunA17_Chr1g0164601 64.982 277 60 4 1 276 1 241 9.04e-117 335
Msa0429290 MtrunA17_Chr3g0082111 64.621 277 61 4 1 276 31 271 1.70e-115 333
Msa0429290 MtrunA17_Chr2g0325591 57.664 274 81 2 10 283 6 244 2.74e-109 317
Msa0429290 MtrunA17_Chr5g0418971 58.801 267 75 2 11 277 7 238 1.72e-106 310
Msa0429290 MtrunA17_Chr8g0379011 57.621 269 79 2 11 279 7 240 5.61e-106 308
Msa0429290 MtrunA17_Chr2g0283791 56.877 269 80 3 12 280 6 238 2.38e-102 299
Msa0429290 MtrunA17_Chr2g0316011 56.929 267 80 2 11 277 8 239 7.21e-102 298
Msa0429290 MtrunA17_Chr4g0043141 59.483 232 81 2 46 277 14 232 2.55e-95 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429290 AT5G10450.1 74.275 276 39 1 8 283 4 247 4.11e-149 417
Msa0429290 AT5G65430.1 73.188 276 42 1 8 283 4 247 1.78e-147 413
Msa0429290 AT5G10450.2 74.539 271 37 1 8 278 4 242 5.52e-146 409
Msa0429290 AT5G10450.3 74.539 271 37 1 8 278 4 242 1.30e-145 409
Msa0429290 AT5G10450.4 74.539 271 37 1 8 278 4 242 1.42e-145 409
Msa0429290 AT5G65430.2 73.432 271 40 1 8 278 4 242 1.60e-144 406
Msa0429290 AT5G65430.3 73.432 271 40 1 8 278 4 242 6.25e-144 405
Msa0429290 AT1G35160.1 64.835 273 63 2 11 283 11 250 8.74e-126 359
Msa0429290 AT1G78300.1 65.185 270 61 2 10 279 4 240 2.33e-125 358
Msa0429290 AT4G09000.1 64.576 271 63 2 11 281 10 247 1.01e-124 357
Msa0429290 AT3G02520.1 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0429290 AT3G02520.2 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0429290 AT1G35160.2 65.299 268 60 2 11 278 11 245 4.53e-124 356
Msa0429290 AT5G38480.1 64.576 271 63 2 10 280 3 240 5.36e-123 352
Msa0429290 AT4G09000.2 64.925 268 61 2 11 278 10 244 2.32e-122 352
Msa0429290 AT5G38480.3 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0429290 AT5G38480.2 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0429290 AT5G16050.1 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0429290 AT5G16050.2 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0429290 AT1G26480.1 59.551 267 73 2 11 277 10 241 8.95e-109 316
Msa0429290 AT2G42590.2 56.410 273 84 2 11 283 7 244 2.81e-101 297
Msa0429290 AT2G42590.1 56.667 270 82 2 11 280 7 241 1.16e-100 295
Msa0429290 AT2G42590.3 56.667 270 82 2 11 280 7 241 1.48e-100 295
Msa0429290 AT1G34760.1 55.762 269 84 2 11 279 5 238 3.47e-100 294
Msa0429290 AT1G34760.2 55.762 269 84 2 11 279 5 238 3.50e-100 294
Msa0429290 AT1G22300.1 56.044 273 85 2 11 283 5 242 6.92e-97 285
Msa0429290 AT1G22300.2 56.044 273 85 2 11 283 5 242 7.23e-97 285
Msa0429290 AT1G22300.3 55.926 270 84 2 11 280 5 239 1.30e-95 282
Msa0429290 AT1G78220.1 38.346 266 128 3 11 275 5 235 5.98e-55 178
Msa0429290 AT1G22290.1 38.776 196 99 5 14 207 8 184 4.71e-32 117
Msa0429290 AT1G22290.2 38.776 196 99 5 14 207 8 184 1.25e-31 117
Msa0429290 AT2G10450.1 68.421 38 12 0 243 280 16 53 2.30e-11 59.3

Find 71 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATCAATTTATAAATT+AGG 0.111804 3_2:+80635176 None:intergenic
TGCGCCAGATATAATTTAAT+TGG 0.184846 3_2:+80635066 None:intergenic
GCCAATCAATTTATAAATTA+GGG 0.197574 3_2:+80635177 None:intergenic
TATAAGTGTGCTGTCTTTGT+AGG 0.261422 3_2:+80635492 None:intergenic
TGAGCCTTGATATCCCTTAT+AGG 0.276927 3_2:-80635269 Msa0429290:exon
GAATGTTTGTGGTAGTATTC+TGG 0.294961 3_2:-80637327 Msa0429290:CDS
ATACAACCCGTCAACCTATA+AGG 0.301012 3_2:+80635255 None:intergenic
AGGTCAGAAAACTTCTTATC+AGG 0.307623 3_2:+80636736 None:intergenic
GGGTGATTATCATAGGTATT+TGG 0.311976 3_2:-80637234 Msa0429290:CDS
ACACATACTGTTCTCTGTTT+AGG 0.318322 3_2:+80637615 None:intergenic
ACCCTAATTTATAAATTGAT+TGG 0.328807 3_2:-80635178 Msa0429290:three_prime_UTR
ATCAACTCATCCTATAAGAT+TGG 0.331215 3_2:-80637035 Msa0429290:CDS
TGAGGAAGCAATTGCTGAAC+TGG 0.348492 3_2:-80635533 Msa0429290:CDS
AGAGCCAAACCCAATCTTAT+AGG 0.362825 3_2:+80637025 None:intergenic
AGCTTGTGACATGGCCAAAC+AGG 0.376909 3_2:-80636957 Msa0429290:intron
AGATCCAATTAAATTATATC+TGG 0.377385 3_2:-80635070 Msa0429290:three_prime_UTR
CGTTAACTCTGATTCAACTT+TGG 0.380898 3_2:+80637349 None:intergenic
TCATCCTATAAGATTGGGTT+TGG 0.386635 3_2:-80637029 Msa0429290:CDS
TGCTTCTTCAAGTGAAAGTA+AGG 0.390843 3_2:-80637276 Msa0429290:CDS
TCAACATAACAGAATCTTTG+TGG 0.397796 3_2:+80636691 None:intergenic
CAGATTAACACAAACCTGTT+TGG 0.398433 3_2:+80636943 None:intergenic
TGAGAGACAACCTCACCCTT+TGG 0.419313 3_2:-80635459 Msa0429290:CDS
TATTTGGCTGAGTTTAAGAT+TGG 0.435348 3_2:-80637218 Msa0429290:CDS
TGATATCCCTTATAGGTTGA+CGG 0.443417 3_2:-80635262 Msa0429290:three_prime_UTR
ATTGCTGAACTGGACACATT+AGG 0.448432 3_2:-80635523 Msa0429290:CDS
TACAACCCGTCAACCTATAA+GGG 0.450779 3_2:+80635256 None:intergenic
TCAACTCATCCTATAAGATT+GGG 0.451846 3_2:-80637034 Msa0429290:CDS
TGGTAGTATTCTGGAGTTGT+TGG 0.453677 3_2:-80637318 Msa0429290:CDS
GATATCCCTTATAGGTTGAC+GGG 0.458675 3_2:-80635261 Msa0429290:three_prime_UTR
AGATGAAGGGTGATTATCAT+AGG 0.459315 3_2:-80637241 Msa0429290:CDS
TATTCTTCCTCTGAAGGAGG+TGG 0.459941 3_2:-80635235 Msa0429290:three_prime_UTR
TCTTGTAAGCGACGGATATG+AGG 0.463010 3_2:+80637480 None:intergenic
ATTTGGATATATTGTCTGAA+TGG 0.473124 3_2:-80635094 Msa0429290:three_prime_UTR
AAGAGAGAAGAGAGAATCAT+GGG 0.475360 3_2:-80637656 Msa0429290:exon
CGTTTCTTCGATTGAACAGA+AGG 0.478904 3_2:-80637423 Msa0429290:CDS
AAAGAGAGAAGAGAGAATCA+TGG 0.480567 3_2:-80637657 Msa0429290:exon
CCTTTGGACTTCTGATGTCC+AGG 0.486316 3_2:-80635443 Msa0429290:intron
TTTGGATATATTGTCTGAAT+GGG 0.490091 3_2:-80635093 Msa0429290:three_prime_UTR
GTTGTCTTACAAAGCTGCAC+AGG 0.491542 3_2:-80637162 Msa0429290:intron
TTCATGCAGAAGCTTGTAGT+GGG 0.493249 3_2:-80637542 Msa0429290:CDS
AATCTTATAGGATGAGTTGA+TGG 0.494756 3_2:+80637037 None:intergenic
TCAGAGTTAACGAATGTTTG+TGG 0.495537 3_2:-80637338 Msa0429290:CDS
TCGATTGAACAGAAGGAAGA+AGG 0.502247 3_2:-80637416 Msa0429290:CDS
GATATCAAGGCTCATCTAGC+TGG 0.506112 3_2:+80635278 None:intergenic
CTTCATGCAGAAGCTTGTAG+TGG 0.529618 3_2:-80637543 Msa0429290:CDS
TCAACCTATAAGGGATATCA+AGG 0.529736 3_2:+80635265 None:intergenic
CTTTCACTTGAAGAAGCAGA+AGG 0.537834 3_2:+80637281 None:intergenic
ATTTGTGATATAGTGTCGTA+TGG 0.540446 3_2:-80635153 Msa0429290:three_prime_UTR
TAAAATTGCTTGACCAAACA+AGG 0.540686 3_2:+80636716 None:intergenic
GGGTTGTATTCTTCCTCTGA+AGG 0.548463 3_2:-80635241 Msa0429290:three_prime_UTR
CACTACAAGCTTCTGCATGA+AGG 0.552358 3_2:+80637544 None:intergenic
ATTCTTCCTCTGAAGGAGGT+GGG 0.567808 3_2:-80635234 Msa0429290:three_prime_UTR
GTCGCTTACAAGAACGTGAT+CGG 0.573437 3_2:-80637470 Msa0429290:CDS
CAGAGCTTAGCGTCGAAGAG+AGG 0.573495 3_2:-80637505 Msa0429290:CDS
CTGGACATCAGAAGTCCAAA+GGG 0.585147 3_2:+80635444 None:intergenic
AGCTGAACGCTACGAGGAGA+TGG 0.585286 3_2:-80637570 Msa0429290:CDS
TCGACGCTAAGCTCTGATGA+TGG 0.586328 3_2:+80637512 None:intergenic
CATCAGAAGTCCAAAGGGTG+AGG 0.595169 3_2:+80635449 None:intergenic
TCATAGCCCACCTCCTTCAG+AGG 0.601484 3_2:+80635228 None:intergenic
TTGTATTCTTCCTCTGAAGG+AGG 0.611172 3_2:-80635238 Msa0429290:three_prime_UTR
ATCTGACAAAGCTTGTGACA+TGG 0.613255 3_2:-80636966 Msa0429290:CDS
CCTGGACATCAGAAGTCCAA+AGG 0.616148 3_2:+80635443 None:intergenic
AAATTCAACACTAATTGCTG+AGG 0.616281 3_2:-80636667 Msa0429290:intron
AGATCATGTTGTGCTTGTGA+AGG 0.627894 3_2:-80637381 Msa0429290:CDS
GTTTAAGGATATTGCTGCTG+CGG 0.646957 3_2:-80637065 Msa0429290:intron
GCTAAGCTCTGATGATGGTG+TGG 0.653682 3_2:+80637517 None:intergenic
TCATGCAGAAGCTTGTAGTG+GGG 0.666058 3_2:-80637541 Msa0429290:CDS
AGAGAAGAGAGAATCATGGG+TGG 0.672151 3_2:-80637653 Msa0429290:exon
TCGGATCGCTACGTGCTGCG+TGG 0.678712 3_2:-80637451 Msa0429290:CDS
AGAACAAGCTGAACGCTACG+AGG 0.693981 3_2:-80637576 Msa0429290:CDS
GATCACGTTCTTGTAAGCGA+CGG 0.709037 3_2:+80637472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATCACAAATTAA+AGG + chr3_2:80635952-80635971 None:intergenic 10.0%
!!! GTTTTTTATTATAAGATGAA+GGG - chr3_2:80635476-80635495 Msa0429290:CDS 15.0%
!! TCAAAAAATTTCATAGTTAT+TGG - chr3_2:80636284-80636303 Msa0429290:intron 15.0%
!!! TATGATTTATATTTTAAGCT+CGG + chr3_2:80636385-80636404 None:intergenic 15.0%
!!! GGTTTTTTATTATAAGATGA+AGG - chr3_2:80635475-80635494 Msa0429290:CDS 20.0%
!! TGAGGTTATTATAATCTAAT+GGG - chr3_2:80636081-80636100 Msa0429290:intron 20.0%
!!! AACTATGAAATTTTTTGACT+AGG + chr3_2:80636282-80636301 None:intergenic 20.0%
!! GAGCTTAAAATATAAATCAT+AGG - chr3_2:80636384-80636403 Msa0429290:intron 20.0%
!!! TTTTAAAAAAGGTTTGTGTT+TGG - chr3_2:80636623-80636642 Msa0429290:intron 20.0%
!! TGCATTAAAGAAATCTATAT+TGG - chr3_2:80636658-80636677 Msa0429290:intron 20.0%
!!! AATTCTCTTTTTTTTCTGTT+TGG - chr3_2:80636791-80636810 Msa0429290:intron 20.0%
!!! AATATTGTTATTCATTTGCA+AGG - chr3_2:80636820-80636839 Msa0429290:intron 20.0%
!! ATTATAAAATTAAACAGAGG+GGG + chr3_2:80637042-80637061 None:intergenic 20.0%
!! CATTATAAAATTAAACAGAG+GGG + chr3_2:80637043-80637062 None:intergenic 20.0%
!! GCATTATAAAATTAAACAGA+GGG + chr3_2:80637044-80637063 None:intergenic 20.0%
!! AGCATTATAAAATTAAACAG+AGG + chr3_2:80637045-80637064 None:intergenic 20.0%
!!! AAACAATTTTCTTTTCCTTT+TGG - chr3_2:80637165-80637184 Msa0429290:CDS 20.0%
!!! TATGTTAAAAACATTTTACC+TGG + chr3_2:80637308-80637327 None:intergenic 20.0%
!!! GCATTTTGATTAATAATCAT+TGG - chr3_2:80637362-80637381 Msa0429290:CDS 20.0%
!! ACCCTAATTTATAAATTGAT+TGG - chr3_2:80637552-80637571 Msa0429290:CDS 20.0%
!! GCCAATCAATTTATAAATTA+GGG + chr3_2:80637556-80637575 None:intergenic 20.0%
!! TGCCAATCAATTTATAAATT+AGG + chr3_2:80637557-80637576 None:intergenic 20.0%
!! AAAACAAACATAAAAAAGTC+TGG + chr3_2:80637604-80637623 None:intergenic 20.0%
!! AGATCCAATTAAATTATATC+TGG - chr3_2:80637660-80637679 Msa0429290:exon 20.0%
!! ATTGTTGTGTTTTGTGTTTA+AGG - chr3_2:80635650-80635669 Msa0429290:intron 25.0%
!!! ATCTTGGTTTTTTGTTTGTT+TGG - chr3_2:80635810-80635829 Msa0429290:intron 25.0%
!! ACAAATTAAAGGAAGCATAT+AGG + chr3_2:80635941-80635960 None:intergenic 25.0%
! CTGAGGTTATTATAATCTAA+TGG - chr3_2:80636080-80636099 Msa0429290:intron 25.0%
!!! ATGAAATTTTTTGACTAGGA+GGG + chr3_2:80636278-80636297 None:intergenic 25.0%
!!! TATGAAATTTTTTGACTAGG+AGG + chr3_2:80636279-80636298 None:intergenic 25.0%
! AATTTCATAGTTATTGGAGT+TGG - chr3_2:80636290-80636309 Msa0429290:intron 25.0%
! AATTCTAACTGCAGAAAATT+TGG - chr3_2:80636457-80636476 Msa0429290:intron 25.0%
!!! AAGAGCGTATATCTATTTTA+CGG + chr3_2:80636485-80636504 None:intergenic 25.0%
! AACTGCAAATATATGGATAT+TGG - chr3_2:80636560-80636579 Msa0429290:intron 25.0%
! TTTCATGGTTAAGTTATTGT+GGG - chr3_2:80636586-80636605 Msa0429290:intron 25.0%
!! ACTTGCTAGAGAAAAAAAAA+AGG - chr3_2:80636983-80637002 Msa0429290:CDS 25.0%
! TTATTCATCTGCAACAAATT+TGG - chr3_2:80637007-80637026 Msa0429290:CDS 25.0%
!! ATTTTCTTTTCCTTTTGGAT+AGG - chr3_2:80637170-80637189 Msa0429290:CDS 25.0%
!!! ACAGAAAAATGTTCTGAAAA+GGG + chr3_2:80637338-80637357 None:intergenic 25.0%
! AACTCAGATTATGATCAATT+TGG + chr3_2:80637408-80637427 None:intergenic 25.0%
! AATCTGAGTTAAGCTATATT+TGG - chr3_2:80637418-80637437 Msa0429290:CDS 25.0%
!!! GTTTTTTATGTCTCATGATT+TGG - chr3_2:80637619-80637638 Msa0429290:CDS 25.0%
! ATTTGGATATATTGTCTGAA+TGG - chr3_2:80637636-80637655 Msa0429290:CDS 25.0%
! TTTGGATATATTGTCTGAAT+GGG - chr3_2:80637637-80637656 Msa0429290:CDS 25.0%
! TATTTGGCTGAGTTTAAGAT+TGG - chr3_2:80635512-80635531 Msa0429290:CDS 30.0%
! AATCTTATAGGATGAGTTGA+TGG + chr3_2:80635696-80635715 None:intergenic 30.0%
ATCAACTCATCCTATAAGAT+TGG - chr3_2:80635695-80635714 Msa0429290:intron 30.0%
TCAACTCATCCTATAAGATT+GGG - chr3_2:80635696-80635715 Msa0429290:intron 30.0%
TAAAATTGCTTGACCAAACA+AGG + chr3_2:80636017-80636036 None:intergenic 30.0%
TCAACATAACAGAATCTTTG+TGG + chr3_2:80636042-80636061 None:intergenic 30.0%
AAATTCAACACTAATTGCTG+AGG - chr3_2:80636063-80636082 Msa0429290:intron 30.0%
CATCCTTTCATAAGATACAT+AGG + chr3_2:80636194-80636213 None:intergenic 30.0%
AAGAAATTCACAGCATATCT+AGG + chr3_2:80636234-80636253 None:intergenic 30.0%
! TATACGCTCTTTCTTTTACA+TGG - chr3_2:80636494-80636513 Msa0429290:intron 30.0%
ATTTGCAGTTAGACTACTAT+GGG + chr3_2:80636550-80636569 None:intergenic 30.0%
TATTTGCAGTTAGACTACTA+TGG + chr3_2:80636551-80636570 None:intergenic 30.0%
GTAGTCTAACTGCAAATATA+TGG - chr3_2:80636553-80636572 Msa0429290:intron 30.0%
! TATGGATATTGGTAGTTTCA+TGG - chr3_2:80636571-80636590 Msa0429290:intron 30.0%
GTTTCATGGTTAAGTTATTG+TGG - chr3_2:80636585-80636604 Msa0429290:intron 30.0%
TTCATGGTTAAGTTATTGTG+GGG - chr3_2:80636587-80636606 Msa0429290:intron 30.0%
TGAGTGAATTTAACTCAGAA+TGG - chr3_2:80636724-80636743 Msa0429290:CDS 30.0%
GAGTGAATTTAACTCAGAAT+GGG - chr3_2:80636725-80636744 Msa0429290:CDS 30.0%
AGTGAATTTAACTCAGAATG+GGG - chr3_2:80636726-80636745 Msa0429290:CDS 30.0%
AGAATTCTCTCTTTACTCTT+TGG - chr3_2:80636908-80636927 Msa0429290:intron 30.0%
AAAGAAAAGAGAAACACAGA+AGG + chr3_2:80637126-80637145 None:intergenic 30.0%
!! GACAGAAAAATGTTCTGAAA+AGG + chr3_2:80637339-80637358 None:intergenic 30.0%
! GATCAATTTGGAGCAATATT+AGG + chr3_2:80637396-80637415 None:intergenic 30.0%
ATTTGTGATATAGTGTCGTA+TGG - chr3_2:80637577-80637596 Msa0429290:CDS 30.0%
TGCGCCAGATATAATTTAAT+TGG + chr3_2:80637667-80637686 None:intergenic 30.0%
AAAGAGAGAAGAGAGAATCA+TGG - chr3_2:80635073-80635092 Msa0429290:three_prime_UTR 35.0%
AAGAGAGAAGAGAGAATCAT+GGG - chr3_2:80635074-80635093 Msa0429290:three_prime_UTR 35.0%
!! TGTTCTCTGTTTAGGTTTTC+TGG + chr3_2:80635110-80635129 None:intergenic 35.0%
ACACATACTGTTCTCTGTTT+AGG + chr3_2:80635118-80635137 None:intergenic 35.0%
CGTTAACTCTGATTCAACTT+TGG + chr3_2:80635384-80635403 None:intergenic 35.0%
TCAGAGTTAACGAATGTTTG+TGG - chr3_2:80635392-80635411 Msa0429290:intron 35.0%
GAATGTTTGTGGTAGTATTC+TGG - chr3_2:80635403-80635422 Msa0429290:intron 35.0%
TGCTTCTTCAAGTGAAAGTA+AGG - chr3_2:80635454-80635473 Msa0429290:CDS 35.0%
AGATGAAGGGTGATTATCAT+AGG - chr3_2:80635489-80635508 Msa0429290:CDS 35.0%
GGGTGATTATCATAGGTATT+TGG - chr3_2:80635496-80635515 Msa0429290:CDS 35.0%
TCATCCTATAAGATTGGGTT+TGG - chr3_2:80635701-80635720 Msa0429290:intron 35.0%
CAGATTAACACAAACCTGTT+TGG + chr3_2:80635790-80635809 None:intergenic 35.0%
GGTTTGTGTTAATCTGATCT+TGG - chr3_2:80635794-80635813 Msa0429290:intron 35.0%
AGGTCAGAAAACTTCTTATC+AGG + chr3_2:80635997-80636016 None:intergenic 35.0%
! AGAAGTTTTCTGACCTTGTT+TGG - chr3_2:80636001-80636020 Msa0429290:intron 35.0%
TGTCAATTGCTCATTCTTAG+TGG + chr3_2:80636118-80636137 None:intergenic 35.0%
GAATGAGCAATTGACATGTT+TGG - chr3_2:80636122-80636141 Msa0429290:intron 35.0%
! GTAAGAAATCCGTTTGACTT+TGG - chr3_2:80636160-80636179 Msa0429290:intron 35.0%
GTGCCTATGTATCTTATGAA+AGG - chr3_2:80636188-80636207 Msa0429290:intron 35.0%
TTCTGATTTACACACTGTGT+TGG - chr3_2:80636422-80636441 Msa0429290:intron 35.0%
TATGGGTTCATTGTTCATTC+AGG + chr3_2:80636533-80636552 None:intergenic 35.0%
! TAAAAGTTTGCTCATGAAGC+TGG - chr3_2:80636684-80636703 Msa0429290:CDS 35.0%
! AAAAGTTTGCTCATGAAGCT+GGG - chr3_2:80636685-80636704 Msa0429290:CDS 35.0%
ATTAAACAGAGGGGGAAAAA+AGG + chr3_2:80637034-80637053 None:intergenic 35.0%
!! AAGAGTGTTGTTTACCATAC+TGG - chr3_2:80637066-80637085 Msa0429290:intron 35.0%
! ACTTGATAACACAACCAGTA+TGG + chr3_2:80637083-80637102 None:intergenic 35.0%
TATAAGTGTGCTGTCTTTGT+AGG + chr3_2:80637241-80637260 None:intergenic 35.0%
!! GAAAAATGTTCTGAAAAGGG+TGG + chr3_2:80637335-80637354 None:intergenic 35.0%
! AAGCTATATTTGGCTTATGC+AGG - chr3_2:80637428-80637447 Msa0429290:CDS 35.0%
TCAACCTATAAGGGATATCA+AGG + chr3_2:80637468-80637487 None:intergenic 35.0%
! TGATATCCCTTATAGGTTGA+CGG - chr3_2:80637468-80637487 Msa0429290:CDS 35.0%
TTCATGCAGAAGCTTGTAGT+GGG - chr3_2:80635188-80635207 Msa0429290:three_prime_UTR 40.0%
CGTTTCTTCGATTGAACAGA+AGG - chr3_2:80635307-80635326 Msa0429290:intron 40.0%
TCGATTGAACAGAAGGAAGA+AGG - chr3_2:80635314-80635333 Msa0429290:intron 40.0%
AGATCATGTTGTGCTTGTGA+AGG - chr3_2:80635349-80635368 Msa0429290:intron 40.0%
!! TGGTAGTATTCTGGAGTTGT+TGG - chr3_2:80635412-80635431 Msa0429290:intron 40.0%
CTTTCACTTGAAGAAGCAGA+AGG + chr3_2:80635452-80635471 None:intergenic 40.0%
TGAGAAAAAATCTGCTGCTG+AGG - chr3_2:80635538-80635557 Msa0429290:CDS 40.0%
GTTTAAGGATATTGCTGCTG+CGG - chr3_2:80635665-80635684 Msa0429290:intron 40.0%
AGAGCCAAACCCAATCTTAT+AGG + chr3_2:80635708-80635727 None:intergenic 40.0%
ATCTGACAAAGCTTGTGACA+TGG - chr3_2:80635764-80635783 Msa0429290:intron 40.0%
GCACAAACACCAAAGTCAAA+CGG + chr3_2:80636172-80636191 None:intergenic 40.0%
ATGAAAGGATGTGTGAAAGC+TGG - chr3_2:80636203-80636222 Msa0429290:intron 40.0%
! CTCTTTCTTTTACATGGCTG+TGG - chr3_2:80636500-80636519 Msa0429290:intron 40.0%
! TCCTTTTGGATAGGCTTTTG+AGG - chr3_2:80637179-80637198 Msa0429290:CDS 40.0%
TCCTCAAAAGCCTATCCAAA+AGG + chr3_2:80637183-80637202 None:intergenic 40.0%
ATTGCTGAACTGGACACATT+AGG - chr3_2:80637207-80637226 Msa0429290:CDS 40.0%
TGGAGCAATATTAGGAAGAG+AGG + chr3_2:80637388-80637407 None:intergenic 40.0%
TGAGCCTTGATATCCCTTAT+AGG - chr3_2:80637461-80637480 Msa0429290:CDS 40.0%
! GATATCCCTTATAGGTTGAC+GGG - chr3_2:80637469-80637488 Msa0429290:CDS 40.0%
TACAACCCGTCAACCTATAA+GGG + chr3_2:80637477-80637496 None:intergenic 40.0%
ATACAACCCGTCAACCTATA+AGG + chr3_2:80637478-80637497 None:intergenic 40.0%
! TTGTATTCTTCCTCTGAAGG+AGG - chr3_2:80637492-80637511 Msa0429290:CDS 40.0%
AGAGAAGAGAGAATCATGGG+TGG - chr3_2:80635077-80635096 Msa0429290:three_prime_UTR 45.0%
! CTTGTTCTGCGAGTTTTGCT+AGG + chr3_2:80635142-80635161 None:intergenic 45.0%
CACTACAAGCTTCTGCATGA+AGG + chr3_2:80635189-80635208 None:intergenic 45.0%
CTTCATGCAGAAGCTTGTAG+TGG - chr3_2:80635187-80635206 Msa0429290:three_prime_UTR 45.0%
TCATGCAGAAGCTTGTAGTG+GGG - chr3_2:80635189-80635208 Msa0429290:three_prime_UTR 45.0%
TCTTGTAAGCGACGGATATG+AGG + chr3_2:80635253-80635272 None:intergenic 45.0%
GATCACGTTCTTGTAAGCGA+CGG + chr3_2:80635261-80635280 None:intergenic 45.0%
GTCGCTTACAAGAACGTGAT+CGG - chr3_2:80635260-80635279 Msa0429290:three_prime_UTR 45.0%
GTTGTCTTACAAAGCTGCAC+AGG - chr3_2:80635568-80635587 Msa0429290:intron 45.0%
CAGAATGGGGAAATTGCACA+TGG - chr3_2:80636739-80636758 Msa0429290:CDS 45.0%
ATGGGGAAATTGCACATGGA+AGG - chr3_2:80636743-80636762 Msa0429290:CDS 45.0%
TGAGGAAGCAATTGCTGAAC+TGG - chr3_2:80637197-80637216 Msa0429290:CDS 45.0%
CTGGACATCAGAAGTCCAAA+GGG + chr3_2:80637289-80637308 None:intergenic 45.0%
GATATCAAGGCTCATCTAGC+TGG + chr3_2:80637455-80637474 None:intergenic 45.0%
GGGTTGTATTCTTCCTCTGA+AGG - chr3_2:80637489-80637508 Msa0429290:CDS 45.0%
! TATTCTTCCTCTGAAGGAGG+TGG - chr3_2:80637495-80637514 Msa0429290:CDS 45.0%
! ATTCTTCCTCTGAAGGAGGT+GGG - chr3_2:80637496-80637515 Msa0429290:CDS 45.0%
!!! TTTATTATATTGAAAATTTT+AGG - chr3_2:80635967-80635986 Msa0429290:intron 5.0%
!!! AACTTATAATTTTTTAAAAA+AGG - chr3_2:80636612-80636631 Msa0429290:intron 5.0%
AGAACAAGCTGAACGCTACG+AGG - chr3_2:80635154-80635173 Msa0429290:three_prime_UTR 50.0%
!! GCTAAGCTCTGATGATGGTG+TGG + chr3_2:80635216-80635235 None:intergenic 50.0%
! TCGACGCTAAGCTCTGATGA+TGG + chr3_2:80635221-80635240 None:intergenic 50.0%
AGCTTGTGACATGGCCAAAC+AGG - chr3_2:80635773-80635792 Msa0429290:intron 50.0%
TGAGAGACAACCTCACCCTT+TGG - chr3_2:80637271-80637290 Msa0429290:CDS 50.0%
CATCAGAAGTCCAAAGGGTG+AGG + chr3_2:80637284-80637303 None:intergenic 50.0%
CCTGGACATCAGAAGTCCAA+AGG + chr3_2:80637290-80637309 None:intergenic 50.0%
CCTTTGGACTTCTGATGTCC+AGG - chr3_2:80637287-80637306 Msa0429290:CDS 50.0%
AGCTGAACGCTACGAGGAGA+TGG - chr3_2:80635160-80635179 Msa0429290:three_prime_UTR 55.0%
! CAGAGCTTAGCGTCGAAGAG+AGG - chr3_2:80635225-80635244 Msa0429290:three_prime_UTR 55.0%
TCATAGCCCACCTCCTTCAG+AGG + chr3_2:80637505-80637524 None:intergenic 55.0%
TCGGATCGCTACGTGCTGCG+TGG - chr3_2:80635279-80635298 Msa0429290:exon 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 80635041 80637711 80635041 ID=Msa0429290;Name=Msa0429290
chr3_2 mRNA 80635041 80637711 80635041 ID=Msa0429290-mRNA-1;Parent=Msa0429290;Name=Msa0429290-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|0.5|0.8|0.8|1|1|5|241|284
chr3_2 exon 80635041 80635302 80635041 ID=Msa0429290-mRNA-1:exon:22151;Parent=Msa0429290-mRNA-1
chr3_2 exon 80635444 80635560 80635444 ID=Msa0429290-mRNA-1:exon:22150;Parent=Msa0429290-mRNA-1
chr3_2 exon 80636668 80636763 80636668 ID=Msa0429290-mRNA-1:exon:22149;Parent=Msa0429290-mRNA-1
chr3_2 exon 80636958 80637080 80636958 ID=Msa0429290-mRNA-1:exon:22148;Parent=Msa0429290-mRNA-1
chr3_2 exon 80637163 80637711 80637163 ID=Msa0429290-mRNA-1:exon:22147;Parent=Msa0429290-mRNA-1
chr3_2 five_prime_UTR 80637661 80637711 80637661 ID=Msa0429290-mRNA-1:five_prime_utr;Parent=Msa0429290-mRNA-1
chr3_2 CDS 80637163 80637660 80637163 ID=Msa0429290-mRNA-1:cds;Parent=Msa0429290-mRNA-1
chr3_2 CDS 80636958 80637080 80636958 ID=Msa0429290-mRNA-1:cds;Parent=Msa0429290-mRNA-1
chr3_2 CDS 80636668 80636763 80636668 ID=Msa0429290-mRNA-1:cds;Parent=Msa0429290-mRNA-1
chr3_2 CDS 80635444 80635560 80635444 ID=Msa0429290-mRNA-1:cds;Parent=Msa0429290-mRNA-1
chr3_2 CDS 80635282 80635302 80635282 ID=Msa0429290-mRNA-1:cds;Parent=Msa0429290-mRNA-1
chr3_2 three_prime_UTR 80635041 80635281 80635041 ID=Msa0429290-mRNA-1:three_prime_utr;Parent=Msa0429290-mRNA-1
Gene Sequence

>Msa0429290

ATGGGTGGTGCGATTCCAGAAAACCTAAACAGAGAACAGTATGTGTACCTAGCAAAACTCGCAGAACAAGCTGAACGCTACGAGGAGATGGTCTCCTTCATGCAGAAGCTTGTAGTGGGGTCCACACCATCATCAGAGCTTAGCGTCGAAGAGAGGAACCTCATATCCGTCGCTTACAAGAACGTGATCGGATCGCTACGTGCTGCGTGGAGAATCGTTTCTTCGATTGAACAGAAGGAAGAAGGTAGAAAGAACGAAGATCATGTTGTGCTTGTGAAGGATTACAGATCCAAAGTTGAATCAGAGTTAACGAATGTTTGTGGTAGTATTCTGGAGTTGTTGGATTCGAATCTTATACCTTCTGCTTCTTCAAGTGAAAGTAAGGTTTTTTATTATAAGATGAAGGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGGTGATGAGAAAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGATATTGCTGCTGCGGATCTTCCATCAACTCATCCTATAAGATTGGGTTTGGCTCTGAATTTCTCTGTTTTCTATTATGAAATTCTCAATCAATCTGACAAAGCTTGTGACATGGCCAAACAGGTCAACCTGATAAGAAGTTTTCTGACCTTGTTTGGTCAAGCAATTTTAAGCCACAAAGATTCTGTTATGTTGAAAAATTCAACACTAATTGCTGAGGCTTTTGAGGAAGCAATTGCTGAACTGGACACATTAGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGACCAGCTAGATGAGCCTTGA

Protein sequence

>Msa0429290

MGGAIPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVGSTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTNVCGSILELLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIGDEKKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACDMAKQVNLIRSFLTLFGQAILSHKDSVMLKNSTLIAEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP*