AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030380 MtrunA17_Chr1g0193951 99.301 143 1 0 35 177 1 143 1.06e-104 296
Msa0030380 MtrunA17_Chr6g0476661 40.260 77 46 0 76 152 3 79 4.66e-16 69.7
Msa0030380 MtrunA17_Chr1g0188281 32.500 80 54 0 73 152 34 113 1.68e-12 61.6
Msa0030380 MtrunA17_Chr6g0476721 32.258 93 63 0 79 171 36 128 3.76e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030380 AT2G32650.2 67.133 143 42 2 35 176 1 139 5.43e-65 196
Msa0030380 AT2G32650.1 67.133 143 42 2 35 176 1 139 5.43e-65 196
Msa0030380 AT2G32180.1 67.133 143 42 2 35 176 1 139 7.22e-65 196
Msa0030380 AT2G32180.2 67.133 143 42 2 35 176 1 139 7.22e-65 196
Msa0030380 AT4G10290.1 35.065 77 47 1 79 152 16 92 5.62e-11 57.4
Msa0030380 AT4G10300.1 31.325 83 57 0 70 152 33 115 9.88e-11 57.4

Find 47 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAACGATAAACCCTTTC+TGG 0.136408 1_1:+56704063 None:intergenic
GCGAATGAGGTGAGAGATTT+TGG 0.184909 1_1:+56704024 None:intergenic
CGTTTCATGCAATTTGTTGC+CGG 0.346254 1_1:-56701917 Msa0030380:CDS
GAGGCTGATCTTTGGTTCAA+TGG 0.368609 1_1:-56701866 Msa0030380:CDS
ATGTTTCAAGATGGTCAGTA+TGG 0.381328 1_1:-56702036 Msa0030380:CDS
AGTGGTTTGAGGCTGATCTT+TGG 0.382114 1_1:-56701874 Msa0030380:CDS
CGTTATAGTTTCCGAGCATA+TGG 0.389309 1_1:-56701830 Msa0030380:CDS
ATGAAACGCTTGCTCCCTTC+AGG 0.397604 1_1:+56701932 None:intergenic
CTCCTTGAACCATTGTTGAT+AGG 0.416620 1_1:+56702190 None:intergenic
CAGATTTGTAGTTGCGAATG+AGG 0.449464 1_1:+56704011 None:intergenic
TTAAACGATAAACCCTTTCT+GGG 0.457873 1_1:+56704064 None:intergenic
CTGCCAATCCCATGGCAACC+TGG 0.474702 1_1:+56702000 None:intergenic
ACCATTGTTGATAGGAGAAT+AGG 0.477458 1_1:+56702198 None:intergenic
TTGTTGCCGGAGATTTAATC+CGG 0.479684 1_1:-56701904 Msa0030380:CDS
CAATGTGAAGGTAGAAAGAA+AGG 0.481006 1_1:-56702086 Msa0030380:CDS
CCTCAAACCACTTCGGATAC+CGG 0.486692 1_1:+56701885 None:intergenic
AATCCAGGTTGCCATGGGAT+TGG 0.488234 1_1:-56702003 Msa0030380:CDS
CTCCTATCAACAATGGTTCA+AGG 0.489683 1_1:-56702192 Msa0030380:CDS
CGGATACCGGATTAAATCTC+CGG 0.495277 1_1:+56701898 None:intergenic
ACTACAAATCTGCTTTCAAA+AGG 0.496221 1_1:-56704000 Msa0030380:intron
CAGGTTGCCATGGGATTGGC+AGG 0.499106 1_1:-56701999 Msa0030380:CDS
GGATTGGCAGGTAGACCAAC+TGG 0.504664 1_1:-56701987 Msa0030380:CDS
CCGGAAAATCCAGGTTGCCA+TGG 0.518583 1_1:-56702009 Msa0030380:CDS
CACATTGTATAATTCTTCCA+AGG 0.523416 1_1:+56702102 None:intergenic
AAACTATAACGTTCTTGATA+CGG 0.530071 1_1:+56701842 None:intergenic
CGGAAAATCCAGGTTGCCAT+GGG 0.538481 1_1:-56702008 Msa0030380:CDS
TATGGAAGACCGGAAAATCC+AGG 0.546447 1_1:-56702018 Msa0030380:CDS
ATAAAGCTGAATACCCAGAA+AGG 0.549047 1_1:-56704077 Msa0030380:CDS
AATGAAGATAGAGAAATCCT+TGG 0.554986 1_1:-56702119 Msa0030380:CDS
AGATGGTCAGTATGGAAGAC+CGG 0.563715 1_1:-56702028 Msa0030380:CDS
TAAAGCTGAATACCCAGAAA+GGG 0.563739 1_1:-56704076 Msa0030380:CDS
CTCAGCTTGATGTTTCAAGA+TGG 0.565626 1_1:-56702045 Msa0030380:CDS
CCGGTATCCGAAGTGGTTTG+AGG 0.566818 1_1:-56701885 Msa0030380:CDS
AATAATCATCACCATATGCT+CGG 0.568249 1_1:+56701819 None:intergenic
TCAAGTAACTCTTCTATGCG+AGG 0.580396 1_1:-56702157 Msa0030380:CDS
ATCGTTTAACAGTAGCAGCA+AGG 0.580476 1_1:-56704050 Msa0030380:CDS
CAAGTAACTCTTCTATGCGA+GGG 0.589742 1_1:-56702156 Msa0030380:CDS
CTTCTTCTATGTACACCAGT+TGG 0.594279 1_1:+56701972 None:intergenic
ACCTATTCTCCTATCAACAA+TGG 0.597081 1_1:-56702199 Msa0030380:CDS
CAACTGGTGTACATAGAAGA+AGG 0.600561 1_1:-56701971 Msa0030380:CDS
AAGTGAGAGTTGTTCCTGAA+GGG 0.600643 1_1:-56701946 Msa0030380:CDS
GAAGTGAGAGTTGTTCCTGA+AGG 0.600726 1_1:-56701947 Msa0030380:CDS
TGGTCTACCTGCCAATCCCA+TGG 0.603266 1_1:+56701992 None:intergenic
GGAAGAATTATACAATGTGA+AGG 0.609686 1_1:-56702098 Msa0030380:CDS
ATTTAATCCGGTATCCGAAG+TGG 0.624736 1_1:-56701892 Msa0030380:CDS
AGATCAGCCTCAAACCACTT+CGG 0.631094 1_1:+56701878 None:intergenic
GTTGATAGGAGAATAGGTGA+AGG 0.653020 1_1:+56702204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAGCTTATACATAA+GGG + chr1_1:56702109-56702128 None:intergenic 15.0%
!! ATAAAAATAGCTTATACATA+AGG + chr1_1:56702110-56702129 None:intergenic 15.0%
!! TTAAAATTATGCATATAACA+GGG + chr1_1:56702547-56702566 None:intergenic 15.0%
!! TTTGTCTAATCTTTATTAAA+TGG + chr1_1:56703407-56703426 None:intergenic 15.0%
!! TAAAAATAGCTTATACATAA+GGG + chr1_1:56702109-56702128 None:intergenic 15.0%
!! ATAAAAATAGCTTATACATA+AGG + chr1_1:56702110-56702129 None:intergenic 15.0%
!! TTAAAATTATGCATATAACA+GGG + chr1_1:56702547-56702566 None:intergenic 15.0%
!! TTTGTCTAATCTTTATTAAA+TGG + chr1_1:56703407-56703426 None:intergenic 15.0%
!! CTTAAAATTATGCATATAAC+AGG + chr1_1:56702548-56702567 None:intergenic 20.0%
!!! CTGTTATATGCATAATTTTA+AGG - chr1_1:56702546-56702565 Msa0030380:intron 20.0%
!!! ATCGATATTCTTTGATTTAA+AGG + chr1_1:56702616-56702635 None:intergenic 20.0%
!!! ATGACTTTTATTGGTTTTAA+TGG + chr1_1:56702674-56702693 None:intergenic 20.0%
!! TATTCAGATAAATTAAGAGT+AGG + chr1_1:56702927-56702946 None:intergenic 20.0%
!! TTTGAGTATAAAAAGTTAAC+AGG - chr1_1:56703648-56703667 Msa0030380:intron 20.0%
!! CTTAAAATTATGCATATAAC+AGG + chr1_1:56702548-56702567 None:intergenic 20.0%
!!! CTGTTATATGCATAATTTTA+AGG - chr1_1:56702546-56702565 Msa0030380:intron 20.0%
!!! ATCGATATTCTTTGATTTAA+AGG + chr1_1:56702616-56702635 None:intergenic 20.0%
!!! ATGACTTTTATTGGTTTTAA+TGG + chr1_1:56702674-56702693 None:intergenic 20.0%
!! TATTCAGATAAATTAAGAGT+AGG + chr1_1:56702927-56702946 None:intergenic 20.0%
!! TTTGAGTATAAAAAGTTAAC+AGG - chr1_1:56703648-56703667 Msa0030380:intron 20.0%
!!! TTTTTTCTGTTCTTCGTAAT+TGG - chr1_1:56701944-56701963 Msa0030380:CDS 25.0%
!! TTTTTCTGTTCTTCGTAATT+GGG - chr1_1:56701945-56701964 Msa0030380:CDS 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_1:56702266-56702285 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+TGG + chr1_1:56702267-56702286 None:intergenic 25.0%
!!! ATATGCATAATTTTAAGGCT+CGG - chr1_1:56702551-56702570 Msa0030380:intron 25.0%
! TTTACTAGAGAGATATTTGA+TGG + chr1_1:56702648-56702667 None:intergenic 25.0%
! CCAATAAAAGTCATACATAT+CGG - chr1_1:56702680-56702699 Msa0030380:intron 25.0%
!!! ACATAGAACCTTTAAAATTG+TGG - chr1_1:56702733-56702752 Msa0030380:intron 25.0%
!! ATTTTCCACCACAATTTTAA+AGG + chr1_1:56702744-56702763 None:intergenic 25.0%
! AACACCTTAAGTAAGAAAAT+TGG - chr1_1:56703035-56703054 Msa0030380:intron 25.0%
! ACACCTTAAGTAAGAAAATT+GGG - chr1_1:56703036-56703055 Msa0030380:intron 25.0%
!! AAACCCAATTTTCTTACTTA+AGG + chr1_1:56703042-56703061 None:intergenic 25.0%
! TTAAGTAAGAAAATTGGGTT+TGG - chr1_1:56703041-56703060 Msa0030380:intron 25.0%
! TTTGTTGAAATCAAAATGTG+AGG - chr1_1:56703157-56703176 Msa0030380:intron 25.0%
!! TTGGTAAATTGTTTCCTTTT+TGG - chr1_1:56703245-56703264 Msa0030380:intron 25.0%
!! TGGTAAATTGTTTCCTTTTT+GGG - chr1_1:56703246-56703265 Msa0030380:intron 25.0%
! CTATAGAATCAACAAAAGAT+TGG - chr1_1:56703344-56703363 Msa0030380:intron 25.0%
!!! AAAGATTGGAAGTTGTTTTT+AGG - chr1_1:56703358-56703377 Msa0030380:intron 25.0%
!!! AAATCAGCTTTAAATCAACT+CGG + chr1_1:56703437-56703456 None:intergenic 25.0%
! AAACTATAACGTTCTTGATA+CGG + chr1_1:56704059-56704078 None:intergenic 25.0%
!!! TTTTTTCTGTTCTTCGTAAT+TGG - chr1_1:56701944-56701963 Msa0030380:CDS 25.0%
!! TTTTTCTGTTCTTCGTAATT+GGG - chr1_1:56701945-56701964 Msa0030380:CDS 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_1:56702266-56702285 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+TGG + chr1_1:56702267-56702286 None:intergenic 25.0%
!!! ATATGCATAATTTTAAGGCT+CGG - chr1_1:56702551-56702570 Msa0030380:intron 25.0%
! TTTACTAGAGAGATATTTGA+TGG + chr1_1:56702648-56702667 None:intergenic 25.0%
! CCAATAAAAGTCATACATAT+CGG - chr1_1:56702680-56702699 Msa0030380:intron 25.0%
!!! ACATAGAACCTTTAAAATTG+TGG - chr1_1:56702733-56702752 Msa0030380:intron 25.0%
!! ATTTTCCACCACAATTTTAA+AGG + chr1_1:56702744-56702763 None:intergenic 25.0%
! AACACCTTAAGTAAGAAAAT+TGG - chr1_1:56703035-56703054 Msa0030380:intron 25.0%
! ACACCTTAAGTAAGAAAATT+GGG - chr1_1:56703036-56703055 Msa0030380:intron 25.0%
!! AAACCCAATTTTCTTACTTA+AGG + chr1_1:56703042-56703061 None:intergenic 25.0%
! TTAAGTAAGAAAATTGGGTT+TGG - chr1_1:56703041-56703060 Msa0030380:intron 25.0%
! TTTGTTGAAATCAAAATGTG+AGG - chr1_1:56703157-56703176 Msa0030380:intron 25.0%
!! TTGGTAAATTGTTTCCTTTT+TGG - chr1_1:56703245-56703264 Msa0030380:intron 25.0%
!! TGGTAAATTGTTTCCTTTTT+GGG - chr1_1:56703246-56703265 Msa0030380:intron 25.0%
! CTATAGAATCAACAAAAGAT+TGG - chr1_1:56703344-56703363 Msa0030380:intron 25.0%
!!! AAAGATTGGAAGTTGTTTTT+AGG - chr1_1:56703358-56703377 Msa0030380:intron 25.0%
!!! AAATCAGCTTTAAATCAACT+CGG + chr1_1:56703437-56703456 None:intergenic 25.0%
! AAACTATAACGTTCTTGATA+CGG + chr1_1:56704059-56704078 None:intergenic 25.0%
TTAAACGATAAACCCTTTCT+GGG + chr1_1:56701837-56701856 None:intergenic 30.0%
ACTACAAATCTGCTTTCAAA+AGG - chr1_1:56701898-56701917 Msa0030380:CDS 30.0%
! CATTTGAGTTCTTTAAGTCT+GGG - chr1_1:56701985-56702004 Msa0030380:CDS 30.0%
!!! GCTGTTTTTTCAAGCTATTT+TGG - chr1_1:56702175-56702194 Msa0030380:CDS 30.0%
! AGCATTTAGAACAACTTGAT+TGG - chr1_1:56702309-56702328 Msa0030380:intron 30.0%
! AATTTTCTGTTCTGTGTGTA+TGG - chr1_1:56702333-56702352 Msa0030380:intron 30.0%
CAGAAACAAATTACATCTAG+CGG + chr1_1:56702420-56702439 None:intergenic 30.0%
!! GCTAGATGTAATTTGTTTCT+GGG - chr1_1:56702419-56702438 Msa0030380:intron 30.0%
TTGATACTTCGTAGATTTGA+GGG + chr1_1:56702587-56702606 None:intergenic 30.0%
TTTGATACTTCGTAGATTTG+AGG + chr1_1:56702588-56702607 None:intergenic 30.0%
! CCGATATGTATGACTTTTAT+TGG + chr1_1:56702683-56702702 None:intergenic 30.0%
!! TAGAACCTTTAAAATTGTGG+TGG - chr1_1:56702736-56702755 Msa0030380:intron 30.0%
!! ATCGCTATTTTGCAATTTTG+AGG - chr1_1:56702825-56702844 Msa0030380:intron 30.0%
TTTAGTCCTTGAAATGGTAA+GGG + chr1_1:56702865-56702884 None:intergenic 30.0%
! TTTTAGTCCTTGAAATGGTA+AGG + chr1_1:56702866-56702885 None:intergenic 30.0%
!!! AGGTATTTTAGTCCTTGAAA+TGG + chr1_1:56702871-56702890 None:intergenic 30.0%
TAGTCCTTGAAATAAAGAGT+AGG + chr1_1:56702895-56702914 None:intergenic 30.0%
CAGATAAATTAAGAGTAGGT+AGG + chr1_1:56702923-56702942 None:intergenic 30.0%
TGAAAACAAAAACACTCAGT+AGG + chr1_1:56703131-56703150 None:intergenic 30.0%
GGTGTTTGATCTTTATCTAA+TGG - chr1_1:56703178-56703197 Msa0030380:intron 30.0%
AGACTATATAGTGAGTGTAT+TGG - chr1_1:56703226-56703245 Msa0030380:intron 30.0%
TGTGTCTATTTCCATCTAAA+TGG + chr1_1:56703272-56703291 None:intergenic 30.0%
TCTCAAAAGGTTATGCTTAT+GGG - chr1_1:56703535-56703554 Msa0030380:intron 30.0%
! TGGTTTTCTTATGATGTCTT+TGG - chr1_1:56703578-56703597 Msa0030380:intron 30.0%
GTATAAAAAGTTAACAGGCA+TGG - chr1_1:56703653-56703672 Msa0030380:intron 30.0%
AATGAAGATAGAGAAATCCT+TGG - chr1_1:56703779-56703798 Msa0030380:intron 30.0%
CACATTGTATAATTCTTCCA+AGG + chr1_1:56703799-56703818 None:intergenic 30.0%
GGAAGAATTATACAATGTGA+AGG - chr1_1:56703800-56703819 Msa0030380:intron 30.0%
TTAAACGATAAACCCTTTCT+GGG + chr1_1:56701837-56701856 None:intergenic 30.0%
ACTACAAATCTGCTTTCAAA+AGG - chr1_1:56701898-56701917 Msa0030380:CDS 30.0%
! CATTTGAGTTCTTTAAGTCT+GGG - chr1_1:56701985-56702004 Msa0030380:CDS 30.0%
!!! GCTGTTTTTTCAAGCTATTT+TGG - chr1_1:56702175-56702194 Msa0030380:CDS 30.0%
! AGCATTTAGAACAACTTGAT+TGG - chr1_1:56702309-56702328 Msa0030380:intron 30.0%
! AATTTTCTGTTCTGTGTGTA+TGG - chr1_1:56702333-56702352 Msa0030380:intron 30.0%
CAGAAACAAATTACATCTAG+CGG + chr1_1:56702420-56702439 None:intergenic 30.0%
!! GCTAGATGTAATTTGTTTCT+GGG - chr1_1:56702419-56702438 Msa0030380:intron 30.0%
TTGATACTTCGTAGATTTGA+GGG + chr1_1:56702587-56702606 None:intergenic 30.0%
TTTGATACTTCGTAGATTTG+AGG + chr1_1:56702588-56702607 None:intergenic 30.0%
! CCGATATGTATGACTTTTAT+TGG + chr1_1:56702683-56702702 None:intergenic 30.0%
!! TAGAACCTTTAAAATTGTGG+TGG - chr1_1:56702736-56702755 Msa0030380:intron 30.0%
!! ATCGCTATTTTGCAATTTTG+AGG - chr1_1:56702825-56702844 Msa0030380:intron 30.0%
TTTAGTCCTTGAAATGGTAA+GGG + chr1_1:56702865-56702884 None:intergenic 30.0%
! TTTTAGTCCTTGAAATGGTA+AGG + chr1_1:56702866-56702885 None:intergenic 30.0%
!!! AGGTATTTTAGTCCTTGAAA+TGG + chr1_1:56702871-56702890 None:intergenic 30.0%
TAGTCCTTGAAATAAAGAGT+AGG + chr1_1:56702895-56702914 None:intergenic 30.0%
CAGATAAATTAAGAGTAGGT+AGG + chr1_1:56702923-56702942 None:intergenic 30.0%
TGAAAACAAAAACACTCAGT+AGG + chr1_1:56703131-56703150 None:intergenic 30.0%
GGTGTTTGATCTTTATCTAA+TGG - chr1_1:56703178-56703197 Msa0030380:intron 30.0%
AGACTATATAGTGAGTGTAT+TGG - chr1_1:56703226-56703245 Msa0030380:intron 30.0%
TGTGTCTATTTCCATCTAAA+TGG + chr1_1:56703272-56703291 None:intergenic 30.0%
TCTCAAAAGGTTATGCTTAT+GGG - chr1_1:56703535-56703554 Msa0030380:intron 30.0%
! TGGTTTTCTTATGATGTCTT+TGG - chr1_1:56703578-56703597 Msa0030380:intron 30.0%
GTATAAAAAGTTAACAGGCA+TGG - chr1_1:56703653-56703672 Msa0030380:intron 30.0%
AATGAAGATAGAGAAATCCT+TGG - chr1_1:56703779-56703798 Msa0030380:intron 30.0%
CACATTGTATAATTCTTCCA+AGG + chr1_1:56703799-56703818 None:intergenic 30.0%
GGAAGAATTATACAATGTGA+AGG - chr1_1:56703800-56703819 Msa0030380:intron 30.0%
ATAAAGCTGAATACCCAGAA+AGG - chr1_1:56701821-56701840 Msa0030380:CDS 35.0%
TAAAGCTGAATACCCAGAAA+GGG - chr1_1:56701822-56701841 Msa0030380:CDS 35.0%
GTTAAACGATAAACCCTTTC+TGG + chr1_1:56701838-56701857 None:intergenic 35.0%
! GCATTTGAGTTCTTTAAGTC+TGG - chr1_1:56701984-56702003 Msa0030380:CDS 35.0%
TCTCACAAAACTTATGCTAC+TGG - chr1_1:56702272-56702291 Msa0030380:intron 35.0%
TGTTCTGTGTGTATGGATAT+GGG - chr1_1:56702340-56702359 Msa0030380:intron 35.0%
AACAAATTACATCTAGCGGA+GGG + chr1_1:56702416-56702435 None:intergenic 35.0%
AAACAAATTACATCTAGCGG+AGG + chr1_1:56702417-56702436 None:intergenic 35.0%
!! CGCTAGATGTAATTTGTTTC+TGG - chr1_1:56702418-56702437 Msa0030380:intron 35.0%
GAAGACTAAGCTCTTTCAAT+AGG - chr1_1:56702516-56702535 Msa0030380:intron 35.0%
ACTAGAGAGATATTTGATGG+AGG + chr1_1:56702645-56702664 None:intergenic 35.0%
CCTTGAAATAAAGAGTAGGT+AGG + chr1_1:56702891-56702910 None:intergenic 35.0%
! CCTACCTACTCTTTATTTCA+AGG - chr1_1:56702888-56702907 Msa0030380:intron 35.0%
AGTCAGCAAATTGAAACCAT+TGG - chr1_1:56703098-56703117 Msa0030380:intron 35.0%
GACACAACAAAACCTATATC+AGG - chr1_1:56703286-56703305 Msa0030380:intron 35.0%
CAACAAAACCTATATCAGGA+AGG - chr1_1:56703290-56703309 Msa0030380:intron 35.0%
AAAACCTATATCAGGAAGGA+AGG - chr1_1:56703294-56703313 Msa0030380:intron 35.0%
TGGTCTATACTTGCAATTGT+GGG + chr1_1:56703387-56703406 None:intergenic 35.0%
ATGGTCTATACTTGCAATTG+TGG + chr1_1:56703388-56703407 None:intergenic 35.0%
ACACGAAATTTCGCAATCAA+GGG + chr1_1:56703488-56703507 None:intergenic 35.0%
AACACGAAATTTCGCAATCA+AGG + chr1_1:56703489-56703508 None:intergenic 35.0%
CTCTCAAAAGGTTATGCTTA+TGG - chr1_1:56703534-56703553 Msa0030380:intron 35.0%
AATTGAGGAGGAAAATGTGT+TGG - chr1_1:56703558-56703577 Msa0030380:intron 35.0%
ACCTATTCTCCTATCAACAA+TGG - chr1_1:56703699-56703718 Msa0030380:intron 35.0%
! ACCATTGTTGATAGGAGAAT+AGG + chr1_1:56703703-56703722 None:intergenic 35.0%
CAATGTGAAGGTAGAAAGAA+AGG - chr1_1:56703812-56703831 Msa0030380:intron 35.0%
ATGTTTCAAGATGGTCAGTA+TGG - chr1_1:56703862-56703881 Msa0030380:intron 35.0%
ATAAAGCTGAATACCCAGAA+AGG - chr1_1:56701821-56701840 Msa0030380:CDS 35.0%
TAAAGCTGAATACCCAGAAA+GGG - chr1_1:56701822-56701841 Msa0030380:CDS 35.0%
GTTAAACGATAAACCCTTTC+TGG + chr1_1:56701838-56701857 None:intergenic 35.0%
! GCATTTGAGTTCTTTAAGTC+TGG - chr1_1:56701984-56702003 Msa0030380:CDS 35.0%
TCTCACAAAACTTATGCTAC+TGG - chr1_1:56702272-56702291 Msa0030380:intron 35.0%
TGTTCTGTGTGTATGGATAT+GGG - chr1_1:56702340-56702359 Msa0030380:intron 35.0%
AACAAATTACATCTAGCGGA+GGG + chr1_1:56702416-56702435 None:intergenic 35.0%
AAACAAATTACATCTAGCGG+AGG + chr1_1:56702417-56702436 None:intergenic 35.0%
!! CGCTAGATGTAATTTGTTTC+TGG - chr1_1:56702418-56702437 Msa0030380:intron 35.0%
GAAGACTAAGCTCTTTCAAT+AGG - chr1_1:56702516-56702535 Msa0030380:intron 35.0%
ACTAGAGAGATATTTGATGG+AGG + chr1_1:56702645-56702664 None:intergenic 35.0%
CCTTGAAATAAAGAGTAGGT+AGG + chr1_1:56702891-56702910 None:intergenic 35.0%
! CCTACCTACTCTTTATTTCA+AGG - chr1_1:56702888-56702907 Msa0030380:intron 35.0%
AGTCAGCAAATTGAAACCAT+TGG - chr1_1:56703098-56703117 Msa0030380:intron 35.0%
GACACAACAAAACCTATATC+AGG - chr1_1:56703286-56703305 Msa0030380:intron 35.0%
CAACAAAACCTATATCAGGA+AGG - chr1_1:56703290-56703309 Msa0030380:intron 35.0%
AAAACCTATATCAGGAAGGA+AGG - chr1_1:56703294-56703313 Msa0030380:intron 35.0%
TGGTCTATACTTGCAATTGT+GGG + chr1_1:56703387-56703406 None:intergenic 35.0%
ATGGTCTATACTTGCAATTG+TGG + chr1_1:56703388-56703407 None:intergenic 35.0%
ACACGAAATTTCGCAATCAA+GGG + chr1_1:56703488-56703507 None:intergenic 35.0%
AACACGAAATTTCGCAATCA+AGG + chr1_1:56703489-56703508 None:intergenic 35.0%
CTCTCAAAAGGTTATGCTTA+TGG - chr1_1:56703534-56703553 Msa0030380:intron 35.0%
AATTGAGGAGGAAAATGTGT+TGG - chr1_1:56703558-56703577 Msa0030380:intron 35.0%
ACCTATTCTCCTATCAACAA+TGG - chr1_1:56703699-56703718 Msa0030380:intron 35.0%
! ACCATTGTTGATAGGAGAAT+AGG + chr1_1:56703703-56703722 None:intergenic 35.0%
CAATGTGAAGGTAGAAAGAA+AGG - chr1_1:56703812-56703831 Msa0030380:intron 35.0%
ATGTTTCAAGATGGTCAGTA+TGG - chr1_1:56703862-56703881 Msa0030380:intron 35.0%
ATCGTTTAACAGTAGCAGCA+AGG - chr1_1:56701848-56701867 Msa0030380:CDS 40.0%
CAGATTTGTAGTTGCGAATG+AGG + chr1_1:56701890-56701909 None:intergenic 40.0%
ACTCGTTTCGTTCGTGAATT+GGG - chr1_1:56702027-56702046 Msa0030380:CDS 40.0%
CTGTTCTGTGTGTATGGATA+TGG - chr1_1:56702339-56702358 Msa0030380:intron 40.0%
GTTCTGTGTGTATGGATATG+GGG - chr1_1:56702341-56702360 Msa0030380:intron 40.0%
!! AATTTGTTTCTGGGCACTGT+CGG - chr1_1:56702428-56702447 Msa0030380:intron 40.0%
AATCTCTGATCTCTTCCAGT+CGG - chr1_1:56702465-56702484 Msa0030380:intron 40.0%
TTCTACAATGTGACGAACCA+CGG + chr1_1:56702499-56702518 None:intergenic 40.0%
ACAGACACAGACTAACACAA+GGG + chr1_1:56702995-56703014 None:intergenic 40.0%
! TGTTAGTCTGTGTCTGTGTT+TGG - chr1_1:56702998-56703017 Msa0030380:intron 40.0%
!! TCCTTTTTGGGCCATTTAGA+TGG - chr1_1:56703258-56703277 Msa0030380:intron 40.0%
TCCATCTAAATGGCCCAAAA+AGG + chr1_1:56703262-56703281 None:intergenic 40.0%
GTTTGAATCCAGCTCTCAAA+AGG - chr1_1:56703522-56703541 Msa0030380:intron 40.0%
!! AAGCATAACCTTTTGAGAGC+TGG + chr1_1:56703533-56703552 None:intergenic 40.0%
GGTTATGCTTATGGGAATTG+AGG - chr1_1:56703543-56703562 Msa0030380:intron 40.0%
TATGCTTATGGGAATTGAGG+AGG - chr1_1:56703546-56703565 Msa0030380:intron 40.0%
! GTTGATAGGAGAATAGGTGA+AGG + chr1_1:56703697-56703716 None:intergenic 40.0%
CTCCTATCAACAATGGTTCA+AGG - chr1_1:56703706-56703725 Msa0030380:intron 40.0%
CTCCTTGAACCATTGTTGAT+AGG + chr1_1:56703711-56703730 None:intergenic 40.0%
TCAAGTAACTCTTCTATGCG+AGG - chr1_1:56703741-56703760 Msa0030380:intron 40.0%
CAAGTAACTCTTCTATGCGA+GGG - chr1_1:56703742-56703761 Msa0030380:intron 40.0%
!!! TCAAGCTGAGCTAGTTTTTC+AGG + chr1_1:56703843-56703862 None:intergenic 40.0%
CTCAGCTTGATGTTTCAAGA+TGG - chr1_1:56703853-56703872 Msa0030380:intron 40.0%
CTTCTTCTATGTACACCAGT+TGG + chr1_1:56703929-56703948 None:intergenic 40.0%
CAACTGGTGTACATAGAAGA+AGG - chr1_1:56703927-56703946 Msa0030380:intron 40.0%
AAGTGAGAGTTGTTCCTGAA+GGG - chr1_1:56703952-56703971 Msa0030380:intron 40.0%
!! CGTTTCATGCAATTTGTTGC+CGG - chr1_1:56703981-56704000 Msa0030380:intron 40.0%
TTGTTGCCGGAGATTTAATC+CGG - chr1_1:56703994-56704013 Msa0030380:intron 40.0%
ATTTAATCCGGTATCCGAAG+TGG - chr1_1:56704006-56704025 Msa0030380:CDS 40.0%
CGTTATAGTTTCCGAGCATA+TGG - chr1_1:56704068-56704087 Msa0030380:CDS 40.0%
ATCGTTTAACAGTAGCAGCA+AGG - chr1_1:56701848-56701867 Msa0030380:CDS 40.0%
CAGATTTGTAGTTGCGAATG+AGG + chr1_1:56701890-56701909 None:intergenic 40.0%
ACTCGTTTCGTTCGTGAATT+GGG - chr1_1:56702027-56702046 Msa0030380:CDS 40.0%
CTGTTCTGTGTGTATGGATA+TGG - chr1_1:56702339-56702358 Msa0030380:intron 40.0%
GTTCTGTGTGTATGGATATG+GGG - chr1_1:56702341-56702360 Msa0030380:intron 40.0%
!! AATTTGTTTCTGGGCACTGT+CGG - chr1_1:56702428-56702447 Msa0030380:intron 40.0%
AATCTCTGATCTCTTCCAGT+CGG - chr1_1:56702465-56702484 Msa0030380:intron 40.0%
TTCTACAATGTGACGAACCA+CGG + chr1_1:56702499-56702518 None:intergenic 40.0%
ACAGACACAGACTAACACAA+GGG + chr1_1:56702995-56703014 None:intergenic 40.0%
! TGTTAGTCTGTGTCTGTGTT+TGG - chr1_1:56702998-56703017 Msa0030380:intron 40.0%
!! TCCTTTTTGGGCCATTTAGA+TGG - chr1_1:56703258-56703277 Msa0030380:intron 40.0%
TCCATCTAAATGGCCCAAAA+AGG + chr1_1:56703262-56703281 None:intergenic 40.0%
GTTTGAATCCAGCTCTCAAA+AGG - chr1_1:56703522-56703541 Msa0030380:intron 40.0%
!! AAGCATAACCTTTTGAGAGC+TGG + chr1_1:56703533-56703552 None:intergenic 40.0%
GGTTATGCTTATGGGAATTG+AGG - chr1_1:56703543-56703562 Msa0030380:intron 40.0%
TATGCTTATGGGAATTGAGG+AGG - chr1_1:56703546-56703565 Msa0030380:intron 40.0%
! GTTGATAGGAGAATAGGTGA+AGG + chr1_1:56703697-56703716 None:intergenic 40.0%
CTCCTATCAACAATGGTTCA+AGG - chr1_1:56703706-56703725 Msa0030380:intron 40.0%
CTCCTTGAACCATTGTTGAT+AGG + chr1_1:56703711-56703730 None:intergenic 40.0%
TCAAGTAACTCTTCTATGCG+AGG - chr1_1:56703741-56703760 Msa0030380:intron 40.0%
CAAGTAACTCTTCTATGCGA+GGG - chr1_1:56703742-56703761 Msa0030380:intron 40.0%
!!! TCAAGCTGAGCTAGTTTTTC+AGG + chr1_1:56703843-56703862 None:intergenic 40.0%
CTCAGCTTGATGTTTCAAGA+TGG - chr1_1:56703853-56703872 Msa0030380:intron 40.0%
CTTCTTCTATGTACACCAGT+TGG + chr1_1:56703929-56703948 None:intergenic 40.0%
CAACTGGTGTACATAGAAGA+AGG - chr1_1:56703927-56703946 Msa0030380:intron 40.0%
AAGTGAGAGTTGTTCCTGAA+GGG - chr1_1:56703952-56703971 Msa0030380:intron 40.0%
!! CGTTTCATGCAATTTGTTGC+CGG - chr1_1:56703981-56704000 Msa0030380:intron 40.0%
TTGTTGCCGGAGATTTAATC+CGG - chr1_1:56703994-56704013 Msa0030380:intron 40.0%
ATTTAATCCGGTATCCGAAG+TGG - chr1_1:56704006-56704025 Msa0030380:CDS 40.0%
CGTTATAGTTTCCGAGCATA+TGG - chr1_1:56704068-56704087 Msa0030380:CDS 40.0%
! GCGAATGAGGTGAGAGATTT+TGG + chr1_1:56701877-56701896 None:intergenic 45.0%
CACTCGTTTCGTTCGTGAAT+TGG - chr1_1:56702026-56702045 Msa0030380:CDS 45.0%
ATCTCTGATCTCTTCCAGTC+GGG - chr1_1:56702466-56702485 Msa0030380:intron 45.0%
GATCGACCCTTACCATTTCA+AGG - chr1_1:56702856-56702875 Msa0030380:intron 45.0%
TGAGCAAGGGATCTAGGAAA+GGG + chr1_1:56702952-56702971 None:intergenic 45.0%
TAGGAATGACCTGTGAGCAA+GGG + chr1_1:56702965-56702984 None:intergenic 45.0%
ATAGGAATGACCTGTGAGCA+AGG + chr1_1:56702966-56702985 None:intergenic 45.0%
CTAACACAAGGGAAGGCAAT+AGG + chr1_1:56702984-56703003 None:intergenic 45.0%
ACACAGACTAACACAAGGGA+AGG + chr1_1:56702991-56703010 None:intergenic 45.0%
CACAGACACAGACTAACACA+AGG + chr1_1:56702996-56703015 None:intergenic 45.0%
CTCAGTAGGTGAGTATCCAA+TGG + chr1_1:56703117-56703136 None:intergenic 45.0%
GTCTCCTTCCTTCCTGATAT+AGG + chr1_1:56703301-56703320 None:intergenic 45.0%
AGATGGTCAGTATGGAAGAC+CGG - chr1_1:56703870-56703889 Msa0030380:intron 45.0%
TATGGAAGACCGGAAAATCC+AGG - chr1_1:56703880-56703899 Msa0030380:intron 45.0%
GAAGTGAGAGTTGTTCCTGA+AGG - chr1_1:56703951-56703970 Msa0030380:intron 45.0%
CGGATACCGGATTAAATCTC+CGG + chr1_1:56704003-56704022 None:intergenic 45.0%
AGATCAGCCTCAAACCACTT+CGG + chr1_1:56704023-56704042 None:intergenic 45.0%
! AGTGGTTTGAGGCTGATCTT+TGG - chr1_1:56704024-56704043 Msa0030380:CDS 45.0%
! GAGGCTGATCTTTGGTTCAA+TGG - chr1_1:56704032-56704051 Msa0030380:CDS 45.0%
! GCGAATGAGGTGAGAGATTT+TGG + chr1_1:56701877-56701896 None:intergenic 45.0%
CACTCGTTTCGTTCGTGAAT+TGG - chr1_1:56702026-56702045 Msa0030380:CDS 45.0%
ATCTCTGATCTCTTCCAGTC+GGG - chr1_1:56702466-56702485 Msa0030380:intron 45.0%
GATCGACCCTTACCATTTCA+AGG - chr1_1:56702856-56702875 Msa0030380:intron 45.0%
TGAGCAAGGGATCTAGGAAA+GGG + chr1_1:56702952-56702971 None:intergenic 45.0%
TAGGAATGACCTGTGAGCAA+GGG + chr1_1:56702965-56702984 None:intergenic 45.0%
ATAGGAATGACCTGTGAGCA+AGG + chr1_1:56702966-56702985 None:intergenic 45.0%
CTAACACAAGGGAAGGCAAT+AGG + chr1_1:56702984-56703003 None:intergenic 45.0%
ACACAGACTAACACAAGGGA+AGG + chr1_1:56702991-56703010 None:intergenic 45.0%
CACAGACACAGACTAACACA+AGG + chr1_1:56702996-56703015 None:intergenic 45.0%
CTCAGTAGGTGAGTATCCAA+TGG + chr1_1:56703117-56703136 None:intergenic 45.0%
GTCTCCTTCCTTCCTGATAT+AGG + chr1_1:56703301-56703320 None:intergenic 45.0%
AGATGGTCAGTATGGAAGAC+CGG - chr1_1:56703870-56703889 Msa0030380:intron 45.0%
TATGGAAGACCGGAAAATCC+AGG - chr1_1:56703880-56703899 Msa0030380:intron 45.0%
GAAGTGAGAGTTGTTCCTGA+AGG - chr1_1:56703951-56703970 Msa0030380:intron 45.0%
CGGATACCGGATTAAATCTC+CGG + chr1_1:56704003-56704022 None:intergenic 45.0%
AGATCAGCCTCAAACCACTT+CGG + chr1_1:56704023-56704042 None:intergenic 45.0%
! AGTGGTTTGAGGCTGATCTT+TGG - chr1_1:56704024-56704043 Msa0030380:CDS 45.0%
! GAGGCTGATCTTTGGTTCAA+TGG - chr1_1:56704032-56704051 Msa0030380:CDS 45.0%
CGTTTCGTTCGTGAATTGGG+TGG - chr1_1:56702030-56702049 Msa0030380:CDS 50.0%
! TGGGGTCAAGCAACTAGCTT+TGG - chr1_1:56702359-56702378 Msa0030380:intron 50.0%
GTGAGCAAGGGATCTAGGAA+AGG + chr1_1:56702953-56702972 None:intergenic 50.0%
TTCCTAGATCCCTTGCTCAC+AGG - chr1_1:56702953-56702972 Msa0030380:intron 50.0%
CAGGAAGGAAGGAGACTAAG+TGG - chr1_1:56703305-56703324 Msa0030380:intron 50.0%
! CCATGGCAACCTGGATTTTC+CGG + chr1_1:56703892-56703911 None:intergenic 50.0%
CGGAAAATCCAGGTTGCCAT+GGG - chr1_1:56703890-56703909 Msa0030380:intron 50.0%
AATCCAGGTTGCCATGGGAT+TGG - chr1_1:56703895-56703914 Msa0030380:intron 50.0%
ATGAAACGCTTGCTCCCTTC+AGG + chr1_1:56703969-56703988 None:intergenic 50.0%
CCTCAAACCACTTCGGATAC+CGG + chr1_1:56704016-56704035 None:intergenic 50.0%
CGTTTCGTTCGTGAATTGGG+TGG - chr1_1:56702030-56702049 Msa0030380:CDS 50.0%
! TGGGGTCAAGCAACTAGCTT+TGG - chr1_1:56702359-56702378 Msa0030380:intron 50.0%
GTGAGCAAGGGATCTAGGAA+AGG + chr1_1:56702953-56702972 None:intergenic 50.0%
TTCCTAGATCCCTTGCTCAC+AGG - chr1_1:56702953-56702972 Msa0030380:intron 50.0%
CAGGAAGGAAGGAGACTAAG+TGG - chr1_1:56703305-56703324 Msa0030380:intron 50.0%
! CCATGGCAACCTGGATTTTC+CGG + chr1_1:56703892-56703911 None:intergenic 50.0%
CGGAAAATCCAGGTTGCCAT+GGG - chr1_1:56703890-56703909 Msa0030380:intron 50.0%
AATCCAGGTTGCCATGGGAT+TGG - chr1_1:56703895-56703914 Msa0030380:intron 50.0%
ATGAAACGCTTGCTCCCTTC+AGG + chr1_1:56703969-56703988 None:intergenic 50.0%
CCTCAAACCACTTCGGATAC+CGG + chr1_1:56704016-56704035 None:intergenic 50.0%
CACTGTCGGACACTAGAGGT+CGG - chr1_1:56702442-56702461 Msa0030380:intron 55.0%
TCCAGTCGGGATTCAAACCG+TGG - chr1_1:56702479-56702498 Msa0030380:intron 55.0%
ACCACGGTTTGAATCCCGAC+TGG + chr1_1:56702483-56702502 None:intergenic 55.0%
GACCTGTGAGCAAGGGATCT+AGG + chr1_1:56702958-56702977 None:intergenic 55.0%
CCGGAAAATCCAGGTTGCCA+TGG - chr1_1:56703889-56703908 Msa0030380:intron 55.0%
TGGTCTACCTGCCAATCCCA+TGG + chr1_1:56703909-56703928 None:intergenic 55.0%
! GGATTGGCAGGTAGACCAAC+TGG - chr1_1:56703911-56703930 Msa0030380:intron 55.0%
CCGGTATCCGAAGTGGTTTG+AGG - chr1_1:56704013-56704032 Msa0030380:CDS 55.0%
CACTGTCGGACACTAGAGGT+CGG - chr1_1:56702442-56702461 Msa0030380:intron 55.0%
TCCAGTCGGGATTCAAACCG+TGG - chr1_1:56702479-56702498 Msa0030380:intron 55.0%
ACCACGGTTTGAATCCCGAC+TGG + chr1_1:56702483-56702502 None:intergenic 55.0%
GACCTGTGAGCAAGGGATCT+AGG + chr1_1:56702958-56702977 None:intergenic 55.0%
CCGGAAAATCCAGGTTGCCA+TGG - chr1_1:56703889-56703908 Msa0030380:intron 55.0%
TGGTCTACCTGCCAATCCCA+TGG + chr1_1:56703909-56703928 None:intergenic 55.0%
! GGATTGGCAGGTAGACCAAC+TGG - chr1_1:56703911-56703930 Msa0030380:intron 55.0%
CCGGTATCCGAAGTGGTTTG+AGG - chr1_1:56704013-56704032 Msa0030380:CDS 55.0%
! TGGGCACTGTCGGACACTAG+AGG - chr1_1:56702438-56702457 Msa0030380:intron 60.0%
CTGCCAATCCCATGGCAACC+TGG + chr1_1:56703901-56703920 None:intergenic 60.0%
! CAGGTTGCCATGGGATTGGC+AGG - chr1_1:56703899-56703918 Msa0030380:intron 60.0%
! TGGGCACTGTCGGACACTAG+AGG - chr1_1:56702438-56702457 Msa0030380:intron 60.0%
CTGCCAATCCCATGGCAACC+TGG + chr1_1:56703901-56703920 None:intergenic 60.0%
! CAGGTTGCCATGGGATTGGC+AGG - chr1_1:56703899-56703918 Msa0030380:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56701820 56704100 56701820 ID=Msa0030380;Name=Msa0030380
chr1_1 mRNA 56701820 56704100 56701820 ID=Msa0030380-mRNA-1;Parent=Msa0030380;Name=Msa0030380-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|0|0|2|0|177
chr1_1 exon 56704001 56704100 56704001 ID=Msa0030380-mRNA-1:exon:17010;Parent=Msa0030380-mRNA-1
chr1_1 exon 56701820 56702250 56701820 ID=Msa0030380-mRNA-1:exon:17009;Parent=Msa0030380-mRNA-1
chr1_1 CDS 56704001 56704100 56704001 ID=Msa0030380-mRNA-1:cds;Parent=Msa0030380-mRNA-1
chr1_1 CDS 56701820 56702250 56701820 ID=Msa0030380-mRNA-1:cds;Parent=Msa0030380-mRNA-1
Gene Sequence

>Msa0030380

GATAAAGCTGAATACCCAGAAAGGGTTTATCGTTTAACAGTAGCAGCAAGGAAACCAAAATCTCTCACCTCATTCGCAACTACAAATCTGCTTTCAAAAGGCATGGCAAGCTTGTTGACATCAACCTTCACCTATTCTCCTATCAACAATGGTTCAAGGAGTTTGAGAAAATCAAGTAACTCTTCTATGCGAGGGTGTTGCGTAAAAGCAATGAAGATAGAGAAATCCTTGGAAGAATTATACAATGTGAAGGTAGAAAGAAAGGTGTCACCTGAAAAACTAGCTCAGCTTGATGTTTCAAGATGGTCAGTATGGAAGACCGGAAAATCCAGGTTGCCATGGGATTGGCAGGTAGACCAACTGGTGTACATAGAAGAAGGTGAAGTGAGAGTTGTTCCTGAAGGGAGCAAGCGTTTCATGCAATTTGTTGCCGGAGATTTAATCCGGTATCCGAAGTGGTTTGAGGCTGATCTTTGGTTCAATGGTCCGTATCAAGAACGTTATAGTTTCCGAGCATATGGTGATGATTAT

Protein sequence

>Msa0030380

DKAEYPERVYRLTVAARKPKSLTSFATTNLLSKGMASLLTSTFTYSPINNGSRSLRKSSNSSMRGCCVKAMKIEKSLEELYNVKVERKVSPEKLAQLDVSRWSVWKTGKSRLPWDWQVDQLVYIEEGEVRVVPEGSKRFMQFVAGDLIRYPKWFEADLWFNGPYQERYSFRAYGDDY