AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173740 MtrunA17_Chr1g0193951 99.301 143 1 0 35 177 1 143 1.06e-104 296
Msa0173740 MtrunA17_Chr6g0476661 40.260 77 46 0 76 152 3 79 4.66e-16 69.7
Msa0173740 MtrunA17_Chr1g0188281 32.500 80 54 0 73 152 34 113 1.68e-12 61.6
Msa0173740 MtrunA17_Chr6g0476721 32.258 93 63 0 79 171 36 128 3.76e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173740 AT2G32650.2 67.133 143 42 2 35 176 1 139 5.43e-65 196
Msa0173740 AT2G32650.1 67.133 143 42 2 35 176 1 139 5.43e-65 196
Msa0173740 AT2G32180.1 67.133 143 42 2 35 176 1 139 7.22e-65 196
Msa0173740 AT2G32180.2 67.133 143 42 2 35 176 1 139 7.22e-65 196
Msa0173740 AT4G10290.1 35.065 77 47 1 79 152 16 92 5.62e-11 57.4
Msa0173740 AT4G10300.1 31.325 83 57 0 70 152 33 115 9.88e-11 57.4

Find 47 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAACGATAAACCCTTTC+TGG 0.136408 1_4:+59105908 None:intergenic
GCGAATGAGGTGAGAGATTT+TGG 0.184909 1_4:+59105869 None:intergenic
CGTTTCATGCAATTTGTTGC+CGG 0.346254 1_4:-59103765 Msa0173740:CDS
GAGGCTGATCTTTGGTTCAA+TGG 0.368609 1_4:-59103714 Msa0173740:CDS
ATGTTTCAAGATGGTCAGTA+TGG 0.381328 1_4:-59103884 Msa0173740:CDS
AGTGGTTTGAGGCTGATCTT+TGG 0.382114 1_4:-59103722 Msa0173740:CDS
CGTTATAGTTTCCGAGCATA+TGG 0.389309 1_4:-59103678 Msa0173740:CDS
ATGAAACGCTTGCTCCCTTC+AGG 0.397604 1_4:+59103780 None:intergenic
CTCCTTGAACCATTGTTGAT+AGG 0.416620 1_4:+59104038 None:intergenic
CAGATTTGTAGTTGCGAATG+AGG 0.449464 1_4:+59105856 None:intergenic
TTAAACGATAAACCCTTTCT+GGG 0.457873 1_4:+59105909 None:intergenic
CTGCCAATCCCATGGCAACC+TGG 0.474702 1_4:+59103848 None:intergenic
ACCATTGTTGATAGGAGAAT+AGG 0.477458 1_4:+59104046 None:intergenic
TTGTTGCCGGAGATTTAATC+CGG 0.479684 1_4:-59103752 Msa0173740:CDS
CAATGTGAAGGTAGAAAGAA+AGG 0.481006 1_4:-59103934 Msa0173740:CDS
CCTCAAACCACTTCGGATAC+CGG 0.486692 1_4:+59103733 None:intergenic
AATCCAGGTTGCCATGGGAT+TGG 0.488234 1_4:-59103851 Msa0173740:CDS
CTCCTATCAACAATGGTTCA+AGG 0.489683 1_4:-59104040 Msa0173740:CDS
CGGATACCGGATTAAATCTC+CGG 0.495277 1_4:+59103746 None:intergenic
ACTACAAATCTGCTTTCAAA+AGG 0.496221 1_4:-59105845 Msa0173740:intron
CAGGTTGCCATGGGATTGGC+AGG 0.499106 1_4:-59103847 Msa0173740:CDS
GGATTGGCAGGTAGACCAAC+TGG 0.504664 1_4:-59103835 Msa0173740:CDS
CCGGAAAATCCAGGTTGCCA+TGG 0.518583 1_4:-59103857 Msa0173740:CDS
CACATTGTATAATTCTTCCA+AGG 0.523416 1_4:+59103950 None:intergenic
AAACTATAACGTTCTTGATA+CGG 0.530071 1_4:+59103690 None:intergenic
CGGAAAATCCAGGTTGCCAT+GGG 0.538481 1_4:-59103856 Msa0173740:CDS
TATGGAAGACCGGAAAATCC+AGG 0.546447 1_4:-59103866 Msa0173740:CDS
ATAAAGCTGAATACCCAGAA+AGG 0.549047 1_4:-59105922 Msa0173740:CDS
AATGAAGATAGAGAAATCCT+TGG 0.554986 1_4:-59103967 Msa0173740:CDS
AGATGGTCAGTATGGAAGAC+CGG 0.563715 1_4:-59103876 Msa0173740:CDS
TAAAGCTGAATACCCAGAAA+GGG 0.563739 1_4:-59105921 Msa0173740:CDS
CTCAGCTTGATGTTTCAAGA+TGG 0.565626 1_4:-59103893 Msa0173740:CDS
CCGGTATCCGAAGTGGTTTG+AGG 0.566818 1_4:-59103733 Msa0173740:CDS
AATAATCATCACCATATGCT+CGG 0.568249 1_4:+59103667 None:intergenic
TCAAGTAACTCTTCTATGCG+AGG 0.580396 1_4:-59104005 Msa0173740:CDS
ATCGTTTAACAGTAGCAGCA+AGG 0.580476 1_4:-59105895 Msa0173740:CDS
CAAGTAACTCTTCTATGCGA+GGG 0.589742 1_4:-59104004 Msa0173740:CDS
CTTCTTCTATGTACACCAGT+TGG 0.594279 1_4:+59103820 None:intergenic
ACCTATTCTCCTATCAACAA+TGG 0.597081 1_4:-59104047 Msa0173740:CDS
CAACTGGTGTACATAGAAGA+AGG 0.600561 1_4:-59103819 Msa0173740:CDS
AAGTGAGAGTTGTTCCTGAA+GGG 0.600643 1_4:-59103794 Msa0173740:CDS
GAAGTGAGAGTTGTTCCTGA+AGG 0.600726 1_4:-59103795 Msa0173740:CDS
TGGTCTACCTGCCAATCCCA+TGG 0.603266 1_4:+59103840 None:intergenic
GGAAGAATTATACAATGTGA+AGG 0.609686 1_4:-59103946 Msa0173740:CDS
ATTTAATCCGGTATCCGAAG+TGG 0.624736 1_4:-59103740 Msa0173740:CDS
AGATCAGCCTCAAACCACTT+CGG 0.631094 1_4:+59103726 None:intergenic
GTTGATAGGAGAATAGGTGA+AGG 0.653020 1_4:+59104052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAGCTTATACATAA+GGG + chr1_4:59103957-59103976 None:intergenic 15.0%
!! ATAAAAATAGCTTATACATA+AGG + chr1_4:59103958-59103977 None:intergenic 15.0%
!! TTAAAATTATGCATATAACA+GGG + chr1_4:59104395-59104414 None:intergenic 15.0%
!! ATAACAATTAAATAAAGAGT+AGG + chr1_4:59104743-59104762 None:intergenic 15.0%
!!! TACTCTTTATTTAATTGTTA+TGG - chr1_4:59104742-59104761 Msa0173740:intron 15.0%
!!! ACTCTTTATTTAATTGTTAT+GGG - chr1_4:59104743-59104762 Msa0173740:intron 15.0%
!! TTTGTCTAATCTTTATTAAA+TGG + chr1_4:59105252-59105271 None:intergenic 15.0%
!! TAAAAATAGCTTATACATAA+GGG + chr1_4:59103957-59103976 None:intergenic 15.0%
!! ATAAAAATAGCTTATACATA+AGG + chr1_4:59103958-59103977 None:intergenic 15.0%
!! TTAAAATTATGCATATAACA+GGG + chr1_4:59104395-59104414 None:intergenic 15.0%
!! ATAACAATTAAATAAAGAGT+AGG + chr1_4:59104743-59104762 None:intergenic 15.0%
!!! TACTCTTTATTTAATTGTTA+TGG - chr1_4:59104742-59104761 Msa0173740:intron 15.0%
!!! ACTCTTTATTTAATTGTTAT+GGG - chr1_4:59104743-59104762 Msa0173740:intron 15.0%
!! TTTGTCTAATCTTTATTAAA+TGG + chr1_4:59105252-59105271 None:intergenic 15.0%
!! CTTAAAATTATGCATATAAC+AGG + chr1_4:59104396-59104415 None:intergenic 20.0%
!!! CTGTTATATGCATAATTTTA+AGG - chr1_4:59104394-59104413 Msa0173740:intron 20.0%
!!! ATCGATATTCTTTGATTTAA+AGG + chr1_4:59104464-59104483 None:intergenic 20.0%
!!! ATGACTTTTATTGGTTTTAA+TGG + chr1_4:59104522-59104541 None:intergenic 20.0%
!! TTTGAGTATAAAAAGTTAAC+AGG - chr1_4:59105493-59105512 Msa0173740:intron 20.0%
!! CTTAAAATTATGCATATAAC+AGG + chr1_4:59104396-59104415 None:intergenic 20.0%
!!! CTGTTATATGCATAATTTTA+AGG - chr1_4:59104394-59104413 Msa0173740:intron 20.0%
!!! ATCGATATTCTTTGATTTAA+AGG + chr1_4:59104464-59104483 None:intergenic 20.0%
!!! ATGACTTTTATTGGTTTTAA+TGG + chr1_4:59104522-59104541 None:intergenic 20.0%
!! TTTGAGTATAAAAAGTTAAC+AGG - chr1_4:59105493-59105512 Msa0173740:intron 20.0%
!!! TTTTTTCTGTTCTTCGTAAT+TGG - chr1_4:59103792-59103811 Msa0173740:CDS 25.0%
!! TTTTTCTGTTCTTCGTAATT+GGG - chr1_4:59103793-59103812 Msa0173740:CDS 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_4:59104114-59104133 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+TGG + chr1_4:59104115-59104134 None:intergenic 25.0%
!!! ATATGCATAATTTTAAGGCT+CGG - chr1_4:59104399-59104418 Msa0173740:intron 25.0%
! TTTACTAGAGAGATATTTGA+TGG + chr1_4:59104496-59104515 None:intergenic 25.0%
! CCAATAAAAGTCATACATAT+CGG - chr1_4:59104528-59104547 Msa0173740:intron 25.0%
!!! ACATAGAACCTTTAAAATTG+TGG - chr1_4:59104581-59104600 Msa0173740:intron 25.0%
!! ATTTTCCACCACAATTTTAA+AGG + chr1_4:59104592-59104611 None:intergenic 25.0%
! CAATTAAATAAAGAGTAGGT+AGG + chr1_4:59104739-59104758 None:intergenic 25.0%
! AACACCTTAAGTAAGAAAAT+TGG - chr1_4:59104880-59104899 Msa0173740:intron 25.0%
! ACACCTTAAGTAAGAAAATT+GGG - chr1_4:59104881-59104900 Msa0173740:intron 25.0%
!! AAACCCAATTTTCTTACTTA+AGG + chr1_4:59104887-59104906 None:intergenic 25.0%
! TTAAGTAAGAAAATTGGGTT+TGG - chr1_4:59104886-59104905 Msa0173740:intron 25.0%
! TTTGTTGAAATCAAAATGTG+AGG - chr1_4:59105002-59105021 Msa0173740:intron 25.0%
!! TTGGTAAATTGTTTCCTTTT+TGG - chr1_4:59105090-59105109 Msa0173740:intron 25.0%
!! TGGTAAATTGTTTCCTTTTT+GGG - chr1_4:59105091-59105110 Msa0173740:intron 25.0%
! CTATAGAATCAACAAAAGAT+TGG - chr1_4:59105189-59105208 Msa0173740:intron 25.0%
!!! AAAGATTGGAAGTTGTTTTT+AGG - chr1_4:59105203-59105222 Msa0173740:intron 25.0%
!!! AAATCAGCTTTAAATCAACT+CGG + chr1_4:59105282-59105301 None:intergenic 25.0%
! AAACTATAACGTTCTTGATA+CGG + chr1_4:59105904-59105923 None:intergenic 25.0%
!!! TTTTTTCTGTTCTTCGTAAT+TGG - chr1_4:59103792-59103811 Msa0173740:CDS 25.0%
!! TTTTTCTGTTCTTCGTAATT+GGG - chr1_4:59103793-59103812 Msa0173740:CDS 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG + chr1_4:59104114-59104133 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGACTATT+TGG + chr1_4:59104115-59104134 None:intergenic 25.0%
!!! ATATGCATAATTTTAAGGCT+CGG - chr1_4:59104399-59104418 Msa0173740:intron 25.0%
! TTTACTAGAGAGATATTTGA+TGG + chr1_4:59104496-59104515 None:intergenic 25.0%
! CCAATAAAAGTCATACATAT+CGG - chr1_4:59104528-59104547 Msa0173740:intron 25.0%
!!! ACATAGAACCTTTAAAATTG+TGG - chr1_4:59104581-59104600 Msa0173740:intron 25.0%
!! ATTTTCCACCACAATTTTAA+AGG + chr1_4:59104592-59104611 None:intergenic 25.0%
! CAATTAAATAAAGAGTAGGT+AGG + chr1_4:59104739-59104758 None:intergenic 25.0%
! AACACCTTAAGTAAGAAAAT+TGG - chr1_4:59104880-59104899 Msa0173740:intron 25.0%
! ACACCTTAAGTAAGAAAATT+GGG - chr1_4:59104881-59104900 Msa0173740:intron 25.0%
!! AAACCCAATTTTCTTACTTA+AGG + chr1_4:59104887-59104906 None:intergenic 25.0%
! TTAAGTAAGAAAATTGGGTT+TGG - chr1_4:59104886-59104905 Msa0173740:intron 25.0%
! TTTGTTGAAATCAAAATGTG+AGG - chr1_4:59105002-59105021 Msa0173740:intron 25.0%
!! TTGGTAAATTGTTTCCTTTT+TGG - chr1_4:59105090-59105109 Msa0173740:intron 25.0%
!! TGGTAAATTGTTTCCTTTTT+GGG - chr1_4:59105091-59105110 Msa0173740:intron 25.0%
! CTATAGAATCAACAAAAGAT+TGG - chr1_4:59105189-59105208 Msa0173740:intron 25.0%
!!! AAAGATTGGAAGTTGTTTTT+AGG - chr1_4:59105203-59105222 Msa0173740:intron 25.0%
!!! AAATCAGCTTTAAATCAACT+CGG + chr1_4:59105282-59105301 None:intergenic 25.0%
! AAACTATAACGTTCTTGATA+CGG + chr1_4:59105904-59105923 None:intergenic 25.0%
TTAAACGATAAACCCTTTCT+GGG + chr1_4:59103685-59103704 None:intergenic 30.0%
ACTACAAATCTGCTTTCAAA+AGG - chr1_4:59103746-59103765 Msa0173740:CDS 30.0%
! CATTTGAGTTCTTTAAGTCT+GGG - chr1_4:59103833-59103852 Msa0173740:CDS 30.0%
!!! GCTGTTTTTTCAAGCTATTT+TGG - chr1_4:59104023-59104042 Msa0173740:CDS 30.0%
! AGCATTTAGAACAACTTGAT+TGG - chr1_4:59104157-59104176 Msa0173740:intron 30.0%
! AATTTTCTGTTCTGTGTGTA+TGG - chr1_4:59104181-59104200 Msa0173740:intron 30.0%
CAGAAACAAATTACATCTAG+CGG + chr1_4:59104268-59104287 None:intergenic 30.0%
!! GCTAGATGTAATTTGTTTCT+GGG - chr1_4:59104267-59104286 Msa0173740:intron 30.0%
TTGATACTTCGTAGATTTGA+GGG + chr1_4:59104435-59104454 None:intergenic 30.0%
TTTGATACTTCGTAGATTTG+AGG + chr1_4:59104436-59104455 None:intergenic 30.0%
! CCGATATGTATGACTTTTAT+TGG + chr1_4:59104531-59104550 None:intergenic 30.0%
!! TAGAACCTTTAAAATTGTGG+TGG - chr1_4:59104584-59104603 Msa0173740:intron 30.0%
!! ATCGCTATTTTGCAATTTTG+AGG - chr1_4:59104673-59104692 Msa0173740:intron 30.0%
TTTAGTCCTTGAAATGGTAA+GGG + chr1_4:59104713-59104732 None:intergenic 30.0%
! TTTTAGTCCTTGAAATGGTA+AGG + chr1_4:59104714-59104733 None:intergenic 30.0%
!!! AGGTATTTTAGTCCTTGAAA+TGG + chr1_4:59104719-59104738 None:intergenic 30.0%
TGAAAACAAAAACACTCAGT+AGG + chr1_4:59104976-59104995 None:intergenic 30.0%
GGTGTTTGATCTTTATCTAA+TGG - chr1_4:59105023-59105042 Msa0173740:intron 30.0%
AGACTATATAGTGAGTGTAT+TGG - chr1_4:59105071-59105090 Msa0173740:intron 30.0%
TGTGTCTATTTCCATCTAAA+TGG + chr1_4:59105117-59105136 None:intergenic 30.0%
TCTCAAAAGGTTATGCTTAT+GGG - chr1_4:59105380-59105399 Msa0173740:intron 30.0%
! TGGTTTTCTTATGATGTCTT+TGG - chr1_4:59105423-59105442 Msa0173740:intron 30.0%
GTATAAAAAGTTAACAGGCA+TGG - chr1_4:59105498-59105517 Msa0173740:intron 30.0%
AATGAAGATAGAGAAATCCT+TGG - chr1_4:59105624-59105643 Msa0173740:intron 30.0%
CACATTGTATAATTCTTCCA+AGG + chr1_4:59105644-59105663 None:intergenic 30.0%
GGAAGAATTATACAATGTGA+AGG - chr1_4:59105645-59105664 Msa0173740:intron 30.0%
TTAAACGATAAACCCTTTCT+GGG + chr1_4:59103685-59103704 None:intergenic 30.0%
ACTACAAATCTGCTTTCAAA+AGG - chr1_4:59103746-59103765 Msa0173740:CDS 30.0%
! CATTTGAGTTCTTTAAGTCT+GGG - chr1_4:59103833-59103852 Msa0173740:CDS 30.0%
!!! GCTGTTTTTTCAAGCTATTT+TGG - chr1_4:59104023-59104042 Msa0173740:CDS 30.0%
! AGCATTTAGAACAACTTGAT+TGG - chr1_4:59104157-59104176 Msa0173740:intron 30.0%
! AATTTTCTGTTCTGTGTGTA+TGG - chr1_4:59104181-59104200 Msa0173740:intron 30.0%
CAGAAACAAATTACATCTAG+CGG + chr1_4:59104268-59104287 None:intergenic 30.0%
!! GCTAGATGTAATTTGTTTCT+GGG - chr1_4:59104267-59104286 Msa0173740:intron 30.0%
TTGATACTTCGTAGATTTGA+GGG + chr1_4:59104435-59104454 None:intergenic 30.0%
TTTGATACTTCGTAGATTTG+AGG + chr1_4:59104436-59104455 None:intergenic 30.0%
! CCGATATGTATGACTTTTAT+TGG + chr1_4:59104531-59104550 None:intergenic 30.0%
!! TAGAACCTTTAAAATTGTGG+TGG - chr1_4:59104584-59104603 Msa0173740:intron 30.0%
!! ATCGCTATTTTGCAATTTTG+AGG - chr1_4:59104673-59104692 Msa0173740:intron 30.0%
TTTAGTCCTTGAAATGGTAA+GGG + chr1_4:59104713-59104732 None:intergenic 30.0%
! TTTTAGTCCTTGAAATGGTA+AGG + chr1_4:59104714-59104733 None:intergenic 30.0%
!!! AGGTATTTTAGTCCTTGAAA+TGG + chr1_4:59104719-59104738 None:intergenic 30.0%
TGAAAACAAAAACACTCAGT+AGG + chr1_4:59104976-59104995 None:intergenic 30.0%
GGTGTTTGATCTTTATCTAA+TGG - chr1_4:59105023-59105042 Msa0173740:intron 30.0%
AGACTATATAGTGAGTGTAT+TGG - chr1_4:59105071-59105090 Msa0173740:intron 30.0%
TGTGTCTATTTCCATCTAAA+TGG + chr1_4:59105117-59105136 None:intergenic 30.0%
TCTCAAAAGGTTATGCTTAT+GGG - chr1_4:59105380-59105399 Msa0173740:intron 30.0%
! TGGTTTTCTTATGATGTCTT+TGG - chr1_4:59105423-59105442 Msa0173740:intron 30.0%
GTATAAAAAGTTAACAGGCA+TGG - chr1_4:59105498-59105517 Msa0173740:intron 30.0%
AATGAAGATAGAGAAATCCT+TGG - chr1_4:59105624-59105643 Msa0173740:intron 30.0%
CACATTGTATAATTCTTCCA+AGG + chr1_4:59105644-59105663 None:intergenic 30.0%
GGAAGAATTATACAATGTGA+AGG - chr1_4:59105645-59105664 Msa0173740:intron 30.0%
ATAAAGCTGAATACCCAGAA+AGG - chr1_4:59103669-59103688 Msa0173740:CDS 35.0%
TAAAGCTGAATACCCAGAAA+GGG - chr1_4:59103670-59103689 Msa0173740:CDS 35.0%
GTTAAACGATAAACCCTTTC+TGG + chr1_4:59103686-59103705 None:intergenic 35.0%
! GCATTTGAGTTCTTTAAGTC+TGG - chr1_4:59103832-59103851 Msa0173740:CDS 35.0%
TCTCACAAAACTTATGCTAC+TGG - chr1_4:59104120-59104139 Msa0173740:intron 35.0%
TGTTCTGTGTGTATGGATAT+GGG - chr1_4:59104188-59104207 Msa0173740:intron 35.0%
AACAAATTACATCTAGCGGA+GGG + chr1_4:59104264-59104283 None:intergenic 35.0%
AAACAAATTACATCTAGCGG+AGG + chr1_4:59104265-59104284 None:intergenic 35.0%
!! CGCTAGATGTAATTTGTTTC+TGG - chr1_4:59104266-59104285 Msa0173740:intron 35.0%
GAAGACTAAGCTCTTTCAAT+AGG - chr1_4:59104364-59104383 Msa0173740:intron 35.0%
ACTAGAGAGATATTTGATGG+AGG + chr1_4:59104493-59104512 None:intergenic 35.0%
AGTCAGCAAATTGAAACCAT+TGG - chr1_4:59104943-59104962 Msa0173740:intron 35.0%
GACACAACAAAACCTATATC+AGG - chr1_4:59105131-59105150 Msa0173740:intron 35.0%
CAACAAAACCTATATCAGGA+AGG - chr1_4:59105135-59105154 Msa0173740:intron 35.0%
AAAACCTATATCAGGAAGGA+AGG - chr1_4:59105139-59105158 Msa0173740:intron 35.0%
TGGTCTATACTTGCAATTGT+GGG + chr1_4:59105232-59105251 None:intergenic 35.0%
ATGGTCTATACTTGCAATTG+TGG + chr1_4:59105233-59105252 None:intergenic 35.0%
ACACGAAATTTCGCAATCAA+GGG + chr1_4:59105333-59105352 None:intergenic 35.0%
AACACGAAATTTCGCAATCA+AGG + chr1_4:59105334-59105353 None:intergenic 35.0%
CTCTCAAAAGGTTATGCTTA+TGG - chr1_4:59105379-59105398 Msa0173740:intron 35.0%
AATTGAGGAGGAAAATGTGT+TGG - chr1_4:59105403-59105422 Msa0173740:intron 35.0%
ACCTATTCTCCTATCAACAA+TGG - chr1_4:59105544-59105563 Msa0173740:intron 35.0%
! ACCATTGTTGATAGGAGAAT+AGG + chr1_4:59105548-59105567 None:intergenic 35.0%
CAATGTGAAGGTAGAAAGAA+AGG - chr1_4:59105657-59105676 Msa0173740:intron 35.0%
ATGTTTCAAGATGGTCAGTA+TGG - chr1_4:59105707-59105726 Msa0173740:intron 35.0%
ATAAAGCTGAATACCCAGAA+AGG - chr1_4:59103669-59103688 Msa0173740:CDS 35.0%
TAAAGCTGAATACCCAGAAA+GGG - chr1_4:59103670-59103689 Msa0173740:CDS 35.0%
GTTAAACGATAAACCCTTTC+TGG + chr1_4:59103686-59103705 None:intergenic 35.0%
! GCATTTGAGTTCTTTAAGTC+TGG - chr1_4:59103832-59103851 Msa0173740:CDS 35.0%
TCTCACAAAACTTATGCTAC+TGG - chr1_4:59104120-59104139 Msa0173740:intron 35.0%
TGTTCTGTGTGTATGGATAT+GGG - chr1_4:59104188-59104207 Msa0173740:intron 35.0%
AACAAATTACATCTAGCGGA+GGG + chr1_4:59104264-59104283 None:intergenic 35.0%
AAACAAATTACATCTAGCGG+AGG + chr1_4:59104265-59104284 None:intergenic 35.0%
!! CGCTAGATGTAATTTGTTTC+TGG - chr1_4:59104266-59104285 Msa0173740:intron 35.0%
GAAGACTAAGCTCTTTCAAT+AGG - chr1_4:59104364-59104383 Msa0173740:intron 35.0%
ACTAGAGAGATATTTGATGG+AGG + chr1_4:59104493-59104512 None:intergenic 35.0%
AGTCAGCAAATTGAAACCAT+TGG - chr1_4:59104943-59104962 Msa0173740:intron 35.0%
GACACAACAAAACCTATATC+AGG - chr1_4:59105131-59105150 Msa0173740:intron 35.0%
CAACAAAACCTATATCAGGA+AGG - chr1_4:59105135-59105154 Msa0173740:intron 35.0%
AAAACCTATATCAGGAAGGA+AGG - chr1_4:59105139-59105158 Msa0173740:intron 35.0%
TGGTCTATACTTGCAATTGT+GGG + chr1_4:59105232-59105251 None:intergenic 35.0%
ATGGTCTATACTTGCAATTG+TGG + chr1_4:59105233-59105252 None:intergenic 35.0%
ACACGAAATTTCGCAATCAA+GGG + chr1_4:59105333-59105352 None:intergenic 35.0%
AACACGAAATTTCGCAATCA+AGG + chr1_4:59105334-59105353 None:intergenic 35.0%
CTCTCAAAAGGTTATGCTTA+TGG - chr1_4:59105379-59105398 Msa0173740:intron 35.0%
AATTGAGGAGGAAAATGTGT+TGG - chr1_4:59105403-59105422 Msa0173740:intron 35.0%
ACCTATTCTCCTATCAACAA+TGG - chr1_4:59105544-59105563 Msa0173740:intron 35.0%
! ACCATTGTTGATAGGAGAAT+AGG + chr1_4:59105548-59105567 None:intergenic 35.0%
CAATGTGAAGGTAGAAAGAA+AGG - chr1_4:59105657-59105676 Msa0173740:intron 35.0%
ATGTTTCAAGATGGTCAGTA+TGG - chr1_4:59105707-59105726 Msa0173740:intron 35.0%
ATCGTTTAACAGTAGCAGCA+AGG - chr1_4:59103696-59103715 Msa0173740:CDS 40.0%
CAGATTTGTAGTTGCGAATG+AGG + chr1_4:59103738-59103757 None:intergenic 40.0%
ACTCGTTTCGTTCGTGAATT+GGG - chr1_4:59103875-59103894 Msa0173740:CDS 40.0%
CTGTTCTGTGTGTATGGATA+TGG - chr1_4:59104187-59104206 Msa0173740:intron 40.0%
GTTCTGTGTGTATGGATATG+GGG - chr1_4:59104189-59104208 Msa0173740:intron 40.0%
!! AATTTGTTTCTGGGCACTGT+CGG - chr1_4:59104276-59104295 Msa0173740:intron 40.0%
AATCTCTGATCTCTTCCAGT+CGG - chr1_4:59104313-59104332 Msa0173740:intron 40.0%
TTCTACAATGTGACGAACCA+CGG + chr1_4:59104347-59104366 None:intergenic 40.0%
ACAGACACAGACTAACACAA+GGG + chr1_4:59104840-59104859 None:intergenic 40.0%
! TGTTAGTCTGTGTCTGTGTT+TGG - chr1_4:59104843-59104862 Msa0173740:intron 40.0%
!! TCCTTTTTGGGCCATTTAGA+TGG - chr1_4:59105103-59105122 Msa0173740:intron 40.0%
TCCATCTAAATGGCCCAAAA+AGG + chr1_4:59105107-59105126 None:intergenic 40.0%
GTTTGAATCCAGCTCTCAAA+AGG - chr1_4:59105367-59105386 Msa0173740:intron 40.0%
!! AAGCATAACCTTTTGAGAGC+TGG + chr1_4:59105378-59105397 None:intergenic 40.0%
GGTTATGCTTATGGGAATTG+AGG - chr1_4:59105388-59105407 Msa0173740:intron 40.0%
TATGCTTATGGGAATTGAGG+AGG - chr1_4:59105391-59105410 Msa0173740:intron 40.0%
! GTTGATAGGAGAATAGGTGA+AGG + chr1_4:59105542-59105561 None:intergenic 40.0%
CTCCTATCAACAATGGTTCA+AGG - chr1_4:59105551-59105570 Msa0173740:intron 40.0%
CTCCTTGAACCATTGTTGAT+AGG + chr1_4:59105556-59105575 None:intergenic 40.0%
TCAAGTAACTCTTCTATGCG+AGG - chr1_4:59105586-59105605 Msa0173740:intron 40.0%
CAAGTAACTCTTCTATGCGA+GGG - chr1_4:59105587-59105606 Msa0173740:intron 40.0%
!!! TCAAGCTGAGCTAGTTTTTC+AGG + chr1_4:59105688-59105707 None:intergenic 40.0%
CTCAGCTTGATGTTTCAAGA+TGG - chr1_4:59105698-59105717 Msa0173740:intron 40.0%
CTTCTTCTATGTACACCAGT+TGG + chr1_4:59105774-59105793 None:intergenic 40.0%
CAACTGGTGTACATAGAAGA+AGG - chr1_4:59105772-59105791 Msa0173740:intron 40.0%
AAGTGAGAGTTGTTCCTGAA+GGG - chr1_4:59105797-59105816 Msa0173740:intron 40.0%
!! CGTTTCATGCAATTTGTTGC+CGG - chr1_4:59105826-59105845 Msa0173740:intron 40.0%
TTGTTGCCGGAGATTTAATC+CGG - chr1_4:59105839-59105858 Msa0173740:intron 40.0%
ATTTAATCCGGTATCCGAAG+TGG - chr1_4:59105851-59105870 Msa0173740:CDS 40.0%
CGTTATAGTTTCCGAGCATA+TGG - chr1_4:59105913-59105932 Msa0173740:CDS 40.0%
ATCGTTTAACAGTAGCAGCA+AGG - chr1_4:59103696-59103715 Msa0173740:CDS 40.0%
CAGATTTGTAGTTGCGAATG+AGG + chr1_4:59103738-59103757 None:intergenic 40.0%
ACTCGTTTCGTTCGTGAATT+GGG - chr1_4:59103875-59103894 Msa0173740:CDS 40.0%
CTGTTCTGTGTGTATGGATA+TGG - chr1_4:59104187-59104206 Msa0173740:intron 40.0%
GTTCTGTGTGTATGGATATG+GGG - chr1_4:59104189-59104208 Msa0173740:intron 40.0%
!! AATTTGTTTCTGGGCACTGT+CGG - chr1_4:59104276-59104295 Msa0173740:intron 40.0%
AATCTCTGATCTCTTCCAGT+CGG - chr1_4:59104313-59104332 Msa0173740:intron 40.0%
TTCTACAATGTGACGAACCA+CGG + chr1_4:59104347-59104366 None:intergenic 40.0%
ACAGACACAGACTAACACAA+GGG + chr1_4:59104840-59104859 None:intergenic 40.0%
! TGTTAGTCTGTGTCTGTGTT+TGG - chr1_4:59104843-59104862 Msa0173740:intron 40.0%
!! TCCTTTTTGGGCCATTTAGA+TGG - chr1_4:59105103-59105122 Msa0173740:intron 40.0%
TCCATCTAAATGGCCCAAAA+AGG + chr1_4:59105107-59105126 None:intergenic 40.0%
GTTTGAATCCAGCTCTCAAA+AGG - chr1_4:59105367-59105386 Msa0173740:intron 40.0%
!! AAGCATAACCTTTTGAGAGC+TGG + chr1_4:59105378-59105397 None:intergenic 40.0%
GGTTATGCTTATGGGAATTG+AGG - chr1_4:59105388-59105407 Msa0173740:intron 40.0%
TATGCTTATGGGAATTGAGG+AGG - chr1_4:59105391-59105410 Msa0173740:intron 40.0%
! GTTGATAGGAGAATAGGTGA+AGG + chr1_4:59105542-59105561 None:intergenic 40.0%
CTCCTATCAACAATGGTTCA+AGG - chr1_4:59105551-59105570 Msa0173740:intron 40.0%
CTCCTTGAACCATTGTTGAT+AGG + chr1_4:59105556-59105575 None:intergenic 40.0%
TCAAGTAACTCTTCTATGCG+AGG - chr1_4:59105586-59105605 Msa0173740:intron 40.0%
CAAGTAACTCTTCTATGCGA+GGG - chr1_4:59105587-59105606 Msa0173740:intron 40.0%
!!! TCAAGCTGAGCTAGTTTTTC+AGG + chr1_4:59105688-59105707 None:intergenic 40.0%
CTCAGCTTGATGTTTCAAGA+TGG - chr1_4:59105698-59105717 Msa0173740:intron 40.0%
CTTCTTCTATGTACACCAGT+TGG + chr1_4:59105774-59105793 None:intergenic 40.0%
CAACTGGTGTACATAGAAGA+AGG - chr1_4:59105772-59105791 Msa0173740:intron 40.0%
AAGTGAGAGTTGTTCCTGAA+GGG - chr1_4:59105797-59105816 Msa0173740:intron 40.0%
!! CGTTTCATGCAATTTGTTGC+CGG - chr1_4:59105826-59105845 Msa0173740:intron 40.0%
TTGTTGCCGGAGATTTAATC+CGG - chr1_4:59105839-59105858 Msa0173740:intron 40.0%
ATTTAATCCGGTATCCGAAG+TGG - chr1_4:59105851-59105870 Msa0173740:CDS 40.0%
CGTTATAGTTTCCGAGCATA+TGG - chr1_4:59105913-59105932 Msa0173740:CDS 40.0%
! GCGAATGAGGTGAGAGATTT+TGG + chr1_4:59103725-59103744 None:intergenic 45.0%
CACTCGTTTCGTTCGTGAAT+TGG - chr1_4:59103874-59103893 Msa0173740:CDS 45.0%
ATCTCTGATCTCTTCCAGTC+GGG - chr1_4:59104314-59104333 Msa0173740:intron 45.0%
GATCGACCCTTACCATTTCA+AGG - chr1_4:59104704-59104723 Msa0173740:intron 45.0%
TGAGCAAGGGATCTAGGAAA+GGG + chr1_4:59104797-59104816 None:intergenic 45.0%
TAGGAATGACCTGTGAGCAA+GGG + chr1_4:59104810-59104829 None:intergenic 45.0%
ATAGGAATGACCTGTGAGCA+AGG + chr1_4:59104811-59104830 None:intergenic 45.0%
CTAACACAAGGGAAGGCAAT+AGG + chr1_4:59104829-59104848 None:intergenic 45.0%
ACACAGACTAACACAAGGGA+AGG + chr1_4:59104836-59104855 None:intergenic 45.0%
CACAGACACAGACTAACACA+AGG + chr1_4:59104841-59104860 None:intergenic 45.0%
CTCAGTAGGTGAGTATCCAA+TGG + chr1_4:59104962-59104981 None:intergenic 45.0%
GTCTCCTTCCTTCCTGATAT+AGG + chr1_4:59105146-59105165 None:intergenic 45.0%
AGATGGTCAGTATGGAAGAC+CGG - chr1_4:59105715-59105734 Msa0173740:intron 45.0%
TATGGAAGACCGGAAAATCC+AGG - chr1_4:59105725-59105744 Msa0173740:intron 45.0%
GAAGTGAGAGTTGTTCCTGA+AGG - chr1_4:59105796-59105815 Msa0173740:intron 45.0%
CGGATACCGGATTAAATCTC+CGG + chr1_4:59105848-59105867 None:intergenic 45.0%
AGATCAGCCTCAAACCACTT+CGG + chr1_4:59105868-59105887 None:intergenic 45.0%
! AGTGGTTTGAGGCTGATCTT+TGG - chr1_4:59105869-59105888 Msa0173740:CDS 45.0%
! GAGGCTGATCTTTGGTTCAA+TGG - chr1_4:59105877-59105896 Msa0173740:CDS 45.0%
! GCGAATGAGGTGAGAGATTT+TGG + chr1_4:59103725-59103744 None:intergenic 45.0%
CACTCGTTTCGTTCGTGAAT+TGG - chr1_4:59103874-59103893 Msa0173740:CDS 45.0%
ATCTCTGATCTCTTCCAGTC+GGG - chr1_4:59104314-59104333 Msa0173740:intron 45.0%
GATCGACCCTTACCATTTCA+AGG - chr1_4:59104704-59104723 Msa0173740:intron 45.0%
TGAGCAAGGGATCTAGGAAA+GGG + chr1_4:59104797-59104816 None:intergenic 45.0%
TAGGAATGACCTGTGAGCAA+GGG + chr1_4:59104810-59104829 None:intergenic 45.0%
ATAGGAATGACCTGTGAGCA+AGG + chr1_4:59104811-59104830 None:intergenic 45.0%
CTAACACAAGGGAAGGCAAT+AGG + chr1_4:59104829-59104848 None:intergenic 45.0%
ACACAGACTAACACAAGGGA+AGG + chr1_4:59104836-59104855 None:intergenic 45.0%
CACAGACACAGACTAACACA+AGG + chr1_4:59104841-59104860 None:intergenic 45.0%
CTCAGTAGGTGAGTATCCAA+TGG + chr1_4:59104962-59104981 None:intergenic 45.0%
GTCTCCTTCCTTCCTGATAT+AGG + chr1_4:59105146-59105165 None:intergenic 45.0%
AGATGGTCAGTATGGAAGAC+CGG - chr1_4:59105715-59105734 Msa0173740:intron 45.0%
TATGGAAGACCGGAAAATCC+AGG - chr1_4:59105725-59105744 Msa0173740:intron 45.0%
GAAGTGAGAGTTGTTCCTGA+AGG - chr1_4:59105796-59105815 Msa0173740:intron 45.0%
CGGATACCGGATTAAATCTC+CGG + chr1_4:59105848-59105867 None:intergenic 45.0%
AGATCAGCCTCAAACCACTT+CGG + chr1_4:59105868-59105887 None:intergenic 45.0%
! AGTGGTTTGAGGCTGATCTT+TGG - chr1_4:59105869-59105888 Msa0173740:CDS 45.0%
! GAGGCTGATCTTTGGTTCAA+TGG - chr1_4:59105877-59105896 Msa0173740:CDS 45.0%
CGTTTCGTTCGTGAATTGGG+TGG - chr1_4:59103878-59103897 Msa0173740:CDS 50.0%
! TGGGGTCAAGCAACTAGCTT+TGG - chr1_4:59104207-59104226 Msa0173740:intron 50.0%
GTGAGCAAGGGATCTAGGAA+AGG + chr1_4:59104798-59104817 None:intergenic 50.0%
TTCCTAGATCCCTTGCTCAC+AGG - chr1_4:59104798-59104817 Msa0173740:intron 50.0%
CAGGAAGGAAGGAGACTAAG+TGG - chr1_4:59105150-59105169 Msa0173740:intron 50.0%
! CCATGGCAACCTGGATTTTC+CGG + chr1_4:59105737-59105756 None:intergenic 50.0%
CGGAAAATCCAGGTTGCCAT+GGG - chr1_4:59105735-59105754 Msa0173740:intron 50.0%
AATCCAGGTTGCCATGGGAT+TGG - chr1_4:59105740-59105759 Msa0173740:intron 50.0%
ATGAAACGCTTGCTCCCTTC+AGG + chr1_4:59105814-59105833 None:intergenic 50.0%
CCTCAAACCACTTCGGATAC+CGG + chr1_4:59105861-59105880 None:intergenic 50.0%
CGTTTCGTTCGTGAATTGGG+TGG - chr1_4:59103878-59103897 Msa0173740:CDS 50.0%
! TGGGGTCAAGCAACTAGCTT+TGG - chr1_4:59104207-59104226 Msa0173740:intron 50.0%
GTGAGCAAGGGATCTAGGAA+AGG + chr1_4:59104798-59104817 None:intergenic 50.0%
TTCCTAGATCCCTTGCTCAC+AGG - chr1_4:59104798-59104817 Msa0173740:intron 50.0%
CAGGAAGGAAGGAGACTAAG+TGG - chr1_4:59105150-59105169 Msa0173740:intron 50.0%
! CCATGGCAACCTGGATTTTC+CGG + chr1_4:59105737-59105756 None:intergenic 50.0%
CGGAAAATCCAGGTTGCCAT+GGG - chr1_4:59105735-59105754 Msa0173740:intron 50.0%
AATCCAGGTTGCCATGGGAT+TGG - chr1_4:59105740-59105759 Msa0173740:intron 50.0%
ATGAAACGCTTGCTCCCTTC+AGG + chr1_4:59105814-59105833 None:intergenic 50.0%
CCTCAAACCACTTCGGATAC+CGG + chr1_4:59105861-59105880 None:intergenic 50.0%
CACTGTCGGACACTAGAGGT+CGG - chr1_4:59104290-59104309 Msa0173740:intron 55.0%
TCCAGTCGGGATTCAAACCG+TGG - chr1_4:59104327-59104346 Msa0173740:intron 55.0%
ACCACGGTTTGAATCCCGAC+TGG + chr1_4:59104331-59104350 None:intergenic 55.0%
GACCTGTGAGCAAGGGATCT+AGG + chr1_4:59104803-59104822 None:intergenic 55.0%
CCGGAAAATCCAGGTTGCCA+TGG - chr1_4:59105734-59105753 Msa0173740:intron 55.0%
TGGTCTACCTGCCAATCCCA+TGG + chr1_4:59105754-59105773 None:intergenic 55.0%
! GGATTGGCAGGTAGACCAAC+TGG - chr1_4:59105756-59105775 Msa0173740:intron 55.0%
CCGGTATCCGAAGTGGTTTG+AGG - chr1_4:59105858-59105877 Msa0173740:CDS 55.0%
CACTGTCGGACACTAGAGGT+CGG - chr1_4:59104290-59104309 Msa0173740:intron 55.0%
TCCAGTCGGGATTCAAACCG+TGG - chr1_4:59104327-59104346 Msa0173740:intron 55.0%
ACCACGGTTTGAATCCCGAC+TGG + chr1_4:59104331-59104350 None:intergenic 55.0%
GACCTGTGAGCAAGGGATCT+AGG + chr1_4:59104803-59104822 None:intergenic 55.0%
CCGGAAAATCCAGGTTGCCA+TGG - chr1_4:59105734-59105753 Msa0173740:intron 55.0%
TGGTCTACCTGCCAATCCCA+TGG + chr1_4:59105754-59105773 None:intergenic 55.0%
! GGATTGGCAGGTAGACCAAC+TGG - chr1_4:59105756-59105775 Msa0173740:intron 55.0%
CCGGTATCCGAAGTGGTTTG+AGG - chr1_4:59105858-59105877 Msa0173740:CDS 55.0%
! TGGGCACTGTCGGACACTAG+AGG - chr1_4:59104286-59104305 Msa0173740:intron 60.0%
CTGCCAATCCCATGGCAACC+TGG + chr1_4:59105746-59105765 None:intergenic 60.0%
! CAGGTTGCCATGGGATTGGC+AGG - chr1_4:59105744-59105763 Msa0173740:intron 60.0%
! TGGGCACTGTCGGACACTAG+AGG - chr1_4:59104286-59104305 Msa0173740:intron 60.0%
CTGCCAATCCCATGGCAACC+TGG + chr1_4:59105746-59105765 None:intergenic 60.0%
! CAGGTTGCCATGGGATTGGC+AGG - chr1_4:59105744-59105763 Msa0173740:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59103668 59105945 59103668 ID=Msa0173740;Name=Msa0173740
chr1_4 mRNA 59103668 59105945 59103668 ID=Msa0173740-mRNA-1;Parent=Msa0173740;Name=Msa0173740-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|0|0|2|0|177
chr1_4 exon 59105846 59105945 59105846 ID=Msa0173740-mRNA-1:exon:18540;Parent=Msa0173740-mRNA-1
chr1_4 exon 59103668 59104098 59103668 ID=Msa0173740-mRNA-1:exon:18539;Parent=Msa0173740-mRNA-1
chr1_4 CDS 59105846 59105945 59105846 ID=Msa0173740-mRNA-1:cds;Parent=Msa0173740-mRNA-1
chr1_4 CDS 59103668 59104098 59103668 ID=Msa0173740-mRNA-1:cds;Parent=Msa0173740-mRNA-1
Gene Sequence

>Msa0173740

GATAAAGCTGAATACCCAGAAAGGGTTTATCGTTTAACAGTAGCAGCAAGGAAACCAAAATCTCTCACCTCATTCGCAACTACAAATCTGCTTTCAAAAGGCATGGCAAGCTTGTTGACATCAACCTTCACCTATTCTCCTATCAACAATGGTTCAAGGAGTTTGAGAAAATCAAGTAACTCTTCTATGCGAGGGTGTTGCGTAAAAGCAATGAAGATAGAGAAATCCTTGGAAGAATTATACAATGTGAAGGTAGAAAGAAAGGTGTCACCTGAAAAACTAGCTCAGCTTGATGTTTCAAGATGGTCAGTATGGAAGACCGGAAAATCCAGGTTGCCATGGGATTGGCAGGTAGACCAACTGGTGTACATAGAAGAAGGTGAAGTGAGAGTTGTTCCTGAAGGGAGCAAGCGTTTCATGCAATTTGTTGCCGGAGATTTAATCCGGTATCCGAAGTGGTTTGAGGCTGATCTTTGGTTCAATGGTCCGTATCAAGAACGTTATAGTTTCCGAGCATATGGTGATGATTAT

Protein sequence

>Msa0173740

DKAEYPERVYRLTVAARKPKSLTSFATTNLLSKGMASLLTSTFTYSPINNGSRSLRKSSNSSMRGCCVKAMKIEKSLEELYNVKVERKVSPEKLAQLDVSRWSVWKTGKSRLPWDWQVDQLVYIEEGEVRVVPEGSKRFMQFVAGDLIRYPKWFEADLWFNGPYQERYSFRAYGDDY