AlfalfaGEDB | Msa1018790

M. sativa cultivar zhongmu-4 / Msa1018790

KEGG: -
GO: GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123
PFAM: PF16851.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018790	XP_003622774.1	99.065	107	0	1	1	106	1	107	6.31e-71	216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018790	sp\|Q9SV72\|EPFL9_ARATH	64.557	79	23	2	30	105	26	102	1.77e-29	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018790	G7KY15	99.065	107	0	1	1	106	1	107	3.02e-71	216

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000860	Msa1018790	0.801991	6.932441e-49	-8.615850e-47
Msa0001950	Msa1018790	0.851164	1.060457e-60	-8.615850e-47
Msa0003470	Msa1018790	0.854637	1.078024e-61	-8.615850e-47
Msa0004360	Msa1018790	0.854148	1.492360e-61	-8.615850e-47
Msa0005050	Msa1018790	0.839801	1.274825e-57	-8.615850e-47
Msa0005710	Msa1018790	0.805238	1.470341e-49	-8.615850e-47
Msa0007450	Msa1018790	0.809100	2.235979e-50	-8.615850e-47
Msa0008830	Msa1018790	0.833667	4.675763e-56	-8.615850e-47
Msa0008850	Msa1018790	0.808538	2.948308e-50	-8.615850e-47
Msa0011720	Msa1018790	0.818113	2.321945e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018790	MtrunA17_Chr7g0234251	99.065	107	0	1	1	106	1	107	5.81e-75	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018790	AT4G12970.1	64.557	79	23	2	30	105	26	102	1.80e-30	104

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Find 46 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATCTGTAGTGATAA+GGG	0.502259	7_1:-39414411	None:intergenic
AACTTTAGCTGCAAGAATTA+AGG	0.311122	7_1:-39413502	None:intergenic
AAGAGTAGCATGAGTACTTT+TGG	0.271602	7_1:-39413477	None:intergenic
AATTACTAGATTGCCCATAA+TGG	0.364394	7_1:-39413191	None:intergenic
AATTCTAGAAGATTGATGAT+TGG	0.426618	7_1:+39414289	Msa1018790:CDS
ACTAACAACTAATTAGAAGA+AGG	0.530841	7_1:-39414548	None:intergenic
AGATAAAGATGAGGAAAGAT+AGG	0.392912	7_1:-39413358	None:intergenic
AGCTGAGCAAGTTCCTGTGG+AGG	0.603576	7_1:+39414369	Msa1018790:CDS
AGTGACCATAAGAGATAGAC+TGG	0.525935	7_1:-39413308	None:intergenic
AGTGATAAGGGCTGTTGATG+GGG	0.645976	7_1:-39414399	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTACTAGATTGCCCATAA+TGG	-	chr7_1:39413194-39413213	None:intergenic	30.0%
GGCAATCTAGTAATTCTAAT+TGG	+	chr7_1:39413199-39413218	Msa1018790:five_prime_UTR	30.0%
AGAGGAACATGATCAAAAAA+AGG	-	chr7_1:39413270-39413289	None:intergenic	30.0%
GAAAGATAGGTAAGATAATG+TGG	-	chr7_1:39413348-39413367	None:intergenic	30.0%
AGATAAAGATGAGGAAAGAT+AGG	-	chr7_1:39413361-39413380	None:intergenic	30.0%
AACTTTAGCTGCAAGAATTA+AGG	-	chr7_1:39413505-39413524	None:intergenic	30.0%
AGCACTTCTCTAAATTATCA+AGG	+	chr7_1:39413976-39413995	Msa1018790:intron	30.0%
TTTGCAGGAATTGAAACAAA+AGG	+	chr7_1:39414089-39414108	Msa1018790:intron	30.0%
TTGCAGGAATTGAAACAAAA+GGG	+	chr7_1:39414090-39414109	Msa1018790:intron	30.0%
TCAAAGAGAACTAAGTTTGA+AGG	+	chr7_1:39414136-39414155	Msa1018790:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	39413073	39414675	39413073	ID=Msa1018790;Name=Msa1018790
chr7_1	mRNA	39413073	39414675	39413073	ID=Msa1018790-mRNA-1;Parent=Msa1018790;Name=Msa1018790-mRNA-1;_AED=0.19;_eAED=0.19;_QI=386\|1\|1\|1\|1\|1\|3\|228\|106
chr7_1	exon	39413073	39413531	39413073	ID=Msa1018790-mRNA-1:exon:7655;Parent=Msa1018790-mRNA-1
chr7_1	exon	39414096	39414157	39414096	ID=Msa1018790-mRNA-1:exon:7656;Parent=Msa1018790-mRNA-1
chr7_1	exon	39414262	39414675	39414262	ID=Msa1018790-mRNA-1:exon:7657;Parent=Msa1018790-mRNA-1
chr7_1	five_prime_UTR	39413073	39413458	39413073	ID=Msa1018790-mRNA-1:five_prime_utr;Parent=Msa1018790-mRNA-1
chr7_1	CDS	39413459	39413531	39413459	ID=Msa1018790-mRNA-1:cds;Parent=Msa1018790-mRNA-1
chr7_1	CDS	39414096	39414157	39414096	ID=Msa1018790-mRNA-1:cds;Parent=Msa1018790-mRNA-1
chr7_1	CDS	39414262	39414447	39414262	ID=Msa1018790-mRNA-1:cds;Parent=Msa1018790-mRNA-1
chr7_1	three_prime_UTR	39414448	39414675	39414448	ID=Msa1018790-mRNA-1:three_prime_utr;Parent=Msa1018790-mRNA-1

Gene Sequence	>Msa1018790 ATGGGTAACACCAAACTCCCAAAAGTACTCATGCTACTCTTGACCTTAATTCTTGCAGCTAAAGTTATACAAGGAATTGAAACAAAAGGGTGGATATCACAATCCTCACAACCTCAAAGAGAACTAAGTTTGAAGGGTAGCAATGAAGCATGGAAACAAAGAAATTCTAGAAGATTGATGATTGGATCCACAGCACCAACTTGTACTTACAATGAATGTAGAGGCTGCAAATATAGATGCAGAGCTGAGCAAGTTCCTGTGGAGGGAAATGACCCCATCAACAGCCCTTATCACTACAGATGTGTTTGTCATAGATCATGA
Protein sequence	>Msa1018790 MGNTKLPKVLMLLLTLILAAKVIQGIETKGWISQSSQPQRELSLKGSNEAWKQRNSRRLMIGSTAPTCTYNECRGCKYRCRAEQVPVEGNDPINSPYHYRCVCHRS*