AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1018790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018790 MtrunA17_Chr7g0234251 99.065 107 0 1 1 106 1 107 5.81e-75 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018790 AT4G12970.1 64.557 79 23 2 30 105 26 102 1.80e-30 104

Find 46 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCATTACGGTCTCCATTA+TGG 0.235411 7_1:+39413177 Msa1018790:five_prime_UTR
ATAGTGATTGATTTGGTATT+TGG 0.269964 7_1:-39413157 None:intergenic
AAGAGTAGCATGAGTACTTT+TGG 0.271602 7_1:-39413477 None:intergenic
GGCAATCTAGTAATTCTAAT+TGG 0.288153 7_1:+39413199 Msa1018790:five_prime_UTR
AACTTTAGCTGCAAGAATTA+AGG 0.311122 7_1:-39413502 None:intergenic
GATTGATTTGGTATTTGGTT+TGG 0.337786 7_1:-39413152 None:intergenic
GAAAAGGAAACTTAACAAAT+AGG 0.342340 7_1:-39414637 None:intergenic
GCTAACTCATAGGAAATTCT+AGG 0.342513 7_1:-39413223 None:intergenic
GTATTTGGTTTGGGTAATAA+TGG 0.363120 7_1:-39413142 None:intergenic
ATCATTACGGTCTCCATTAT+GGG 0.363194 7_1:+39413178 Msa1018790:five_prime_UTR
AATTACTAGATTGCCCATAA+TGG 0.364394 7_1:-39413191 None:intergenic
TTCAAACTTAGTTCTCTTTG+AGG 0.370756 7_1:-39414134 None:intergenic
TTCAATAGTAAAGAATCATT+TGG 0.376505 7_1:-39413116 None:intergenic
ATTGATTTGGTATTTGGTTT+GGG 0.382485 7_1:-39413151 None:intergenic
AGATAAAGATGAGGAAAGAT+AGG 0.392912 7_1:-39413358 None:intergenic
CGTAATGATAGTGATTGATT+TGG 0.395034 7_1:-39413164 None:intergenic
TTCATTAAAATAGATTATAT+AGG 0.405160 7_1:+39414480 Msa1018790:three_prime_UTR
TTTGCAGGAATTGAAACAAA+AGG 0.418042 7_1:+39414089 Msa1018790:intron
AATTCTAGAAGATTGATGAT+TGG 0.426618 7_1:+39414289 Msa1018790:CDS
CAAACACATCTGTAGTGATA+AGG 0.436257 7_1:-39414412 None:intergenic
CAAATCAATCACTATCATTA+CGG 0.442614 7_1:+39413165 Msa1018790:five_prime_UTR
TCAAAGAGAACTAAGTTTGA+AGG 0.442646 7_1:+39414136 Msa1018790:CDS
GACTATAGTGGCTAACTCAT+AGG 0.467910 7_1:-39413233 None:intergenic
CTTGCAGCTAAAGTTATACA+AGG 0.476292 7_1:+39413510 Msa1018790:CDS
TAGTGATAAGGGCTGTTGAT+GGG 0.499193 7_1:-39414400 None:intergenic
TTGCAGGAATTGAAACAAAA+GGG 0.500483 7_1:+39414090 Msa1018790:intron
AAACACATCTGTAGTGATAA+GGG 0.502259 7_1:-39414411 None:intergenic
ATGGGGTCATTTCCCTCCAC+AGG 0.509832 7_1:-39414382 None:intergenic
GTAGTGATAAGGGCTGTTGA+TGG 0.515350 7_1:-39414401 None:intergenic
AGTGACCATAAGAGATAGAC+TGG 0.525935 7_1:-39413308 None:intergenic
GAAAGATAGGTAAGATAATG+TGG 0.529328 7_1:-39413345 None:intergenic
ACTAACAACTAATTAGAAGA+AGG 0.530841 7_1:-39414548 None:intergenic
TAGTAAAGAATCATTTGGAA+TGG 0.550429 7_1:-39413111 None:intergenic
TAGTTCTCTTTGAGGTTGTG+AGG 0.552834 7_1:-39414126 None:intergenic
CATTCATTGTAAGTACAAGT+TGG 0.566084 7_1:-39414322 None:intergenic
TTCAGGGTAGCAATGAAGCA+TGG 0.580977 7_1:+39414257 Msa1018790:intron
GTACTGAATGCTGACTATAG+TGG 0.596322 7_1:-39413245 None:intergenic
AGCTGAGCAAGTTCCTGTGG+AGG 0.603576 7_1:+39414369 Msa1018790:CDS
CAAAATCTGCACTAAGACAG+AGG 0.612880 7_1:-39413285 None:intergenic
GCTGAGCAAGTTCCTGTGGA+GGG 0.617680 7_1:+39414370 Msa1018790:CDS
CAGAGCTGAGCAAGTTCCTG+TGG 0.618590 7_1:+39414366 Msa1018790:CDS
GGTAAGATAATGTGGTGTTG+TGG 0.618860 7_1:-39413337 None:intergenic
CAGGAATTGAAACAAAAGGG+TGG 0.635486 7_1:+39414093 Msa1018790:intron
AGTGATAAGGGCTGTTGATG+GGG 0.645976 7_1:-39414399 None:intergenic
TGTACTTACAATGAATGTAG+AGG 0.646526 7_1:+39414328 Msa1018790:CDS
GTAAGTACAAGTTGGTGCTG+TGG 0.653282 7_1:-39414314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTAAAATAGATTATAT+AGG + chr7_1:39414480-39414499 Msa1018790:three_prime_UTR 10.0%
!! TTCATTAAAATAGATTATAT+AGG + chr7_1:39414480-39414499 Msa1018790:three_prime_UTR 10.0%
!!! TAAGATAAAAAATGTGTTTT+TGG - chr7_1:39413386-39413405 None:intergenic 15.0%
!! GATTCTTCTTATTATTATAT+TGG + chr7_1:39413653-39413672 Msa1018790:intron 15.0%
!!! TAAGTTTTACAAAATTACAT+TGG + chr7_1:39413851-39413870 Msa1018790:intron 15.0%
!!! TTTTTGTATCTATTATTTTC+AGG + chr7_1:39414240-39414259 Msa1018790:intron 15.0%
!!! TTTTGTATCTATTATTTTCA+GGG + chr7_1:39414241-39414260 Msa1018790:intron 15.0%
!!! ATAATGTTAATTTTGTGTTT+TGG + chr7_1:39414503-39414522 Msa1018790:three_prime_UTR 15.0%
!! ATAGAAGTAAAAATATGAAA+AGG - chr7_1:39414656-39414675 None:intergenic 15.0%
!!! TAAGATAAAAAATGTGTTTT+TGG - chr7_1:39413386-39413405 None:intergenic 15.0%
!! GATTCTTCTTATTATTATAT+TGG + chr7_1:39413653-39413672 Msa1018790:intron 15.0%
!!! TAAGTTTTACAAAATTACAT+TGG + chr7_1:39413851-39413870 Msa1018790:intron 15.0%
!!! TTTTTGTATCTATTATTTTC+AGG + chr7_1:39414240-39414259 Msa1018790:intron 15.0%
!!! TTTTGTATCTATTATTTTCA+GGG + chr7_1:39414241-39414260 Msa1018790:intron 15.0%
!!! ATAATGTTAATTTTGTGTTT+TGG + chr7_1:39414503-39414522 Msa1018790:three_prime_UTR 15.0%
!! ATAGAAGTAAAAATATGAAA+AGG - chr7_1:39414656-39414675 None:intergenic 15.0%
!! TTCAATAGTAAAGAATCATT+TGG - chr7_1:39413119-39413138 None:intergenic 20.0%
!! CATAACAAAAAAAAAAAGAG+AGG + chr7_1:39413433-39413452 Msa1018790:five_prime_UTR 20.0%
!! TCTTTCAATTGTATATAGTT+TGG + chr7_1:39413681-39413700 Msa1018790:intron 20.0%
!! CATATTATACCTTACTTTAT+TGG + chr7_1:39413765-39413784 Msa1018790:intron 20.0%
!! AAAAATACACCAATAAAGTA+AGG - chr7_1:39413777-39413796 None:intergenic 20.0%
!! TTGTAAAACTTATGACAATT+TGG - chr7_1:39413843-39413862 None:intergenic 20.0%
!! ATCAATTTGAATTAATTGCT+TGG + chr7_1:39414179-39414198 Msa1018790:intron 20.0%
!! TTCAATAGTAAAGAATCATT+TGG - chr7_1:39413119-39413138 None:intergenic 20.0%
!! CATAACAAAAAAAAAAAGAG+AGG + chr7_1:39413433-39413452 Msa1018790:five_prime_UTR 20.0%
!! TCTTTCAATTGTATATAGTT+TGG + chr7_1:39413681-39413700 Msa1018790:intron 20.0%
!! CATATTATACCTTACTTTAT+TGG + chr7_1:39413765-39413784 Msa1018790:intron 20.0%
!! AAAAATACACCAATAAAGTA+AGG - chr7_1:39413777-39413796 None:intergenic 20.0%
!! TTGTAAAACTTATGACAATT+TGG - chr7_1:39413843-39413862 None:intergenic 20.0%
!! ATCAATTTGAATTAATTGCT+TGG + chr7_1:39414179-39414198 Msa1018790:intron 20.0%
! TAGTAAAGAATCATTTGGAA+TGG - chr7_1:39413114-39413133 None:intergenic 25.0%
!!! ATTGATTTGGTATTTGGTTT+GGG - chr7_1:39413154-39413173 None:intergenic 25.0%
!!! ATAGTGATTGATTTGGTATT+TGG - chr7_1:39413160-39413179 None:intergenic 25.0%
! CAAATCAATCACTATCATTA+CGG + chr7_1:39413165-39413184 Msa1018790:five_prime_UTR 25.0%
!!! TTTTTGGAAAGATAAAGATG+AGG - chr7_1:39413370-39413389 None:intergenic 25.0%
! AAAAAAAAAAGAGAGGAGAA+TGG + chr7_1:39413440-39413459 Msa1018790:exon 25.0%
! AAAAAAAAAGAGAGGAGAAT+GGG + chr7_1:39413441-39413460 Msa1018790:exon 25.0%
! GAATCATAGTATCATTAAGT+AGG - chr7_1:39413555-39413574 None:intergenic 25.0%
! AGAATTCATTGGAACTTTAT+AGG - chr7_1:39413585-39413604 None:intergenic 25.0%
!! GAAAAAAAAGAAAGAGTGTA+AGG - chr7_1:39413623-39413642 None:intergenic 25.0%
!!! TTCTTTTTTTTCACTTCTCT+TGG + chr7_1:39413631-39413650 Msa1018790:intron 25.0%
! TTAAAACTTCAACAAAATCG+TGG - chr7_1:39413879-39413898 None:intergenic 25.0%
! AAATTAGTGCATGCTTAAAT+TGG - chr7_1:39413949-39413968 None:intergenic 25.0%
! GCAAAGAATGTTACAAATTT+AGG - chr7_1:39414074-39414093 None:intergenic 25.0%
! AAATTTGTAACATTCTTTGC+AGG + chr7_1:39414074-39414093 Msa1018790:intron 25.0%
!! AATTCTAGAAGATTGATGAT+TGG + chr7_1:39414289-39414308 Msa1018790:CDS 25.0%
! ACTAACAACTAATTAGAAGA+AGG - chr7_1:39414551-39414570 None:intergenic 25.0%
! GAAAAGGAAACTTAACAAAT+AGG - chr7_1:39414640-39414659 None:intergenic 25.0%
! TAGTAAAGAATCATTTGGAA+TGG - chr7_1:39413114-39413133 None:intergenic 25.0%
!!! ATTGATTTGGTATTTGGTTT+GGG - chr7_1:39413154-39413173 None:intergenic 25.0%
!!! ATAGTGATTGATTTGGTATT+TGG - chr7_1:39413160-39413179 None:intergenic 25.0%
! CAAATCAATCACTATCATTA+CGG + chr7_1:39413165-39413184 Msa1018790:five_prime_UTR 25.0%
!!! TTTTTGGAAAGATAAAGATG+AGG - chr7_1:39413370-39413389 None:intergenic 25.0%
! AAAAAAAAAAGAGAGGAGAA+TGG + chr7_1:39413440-39413459 Msa1018790:exon 25.0%
! AAAAAAAAAGAGAGGAGAAT+GGG + chr7_1:39413441-39413460 Msa1018790:exon 25.0%
! GAATCATAGTATCATTAAGT+AGG - chr7_1:39413555-39413574 None:intergenic 25.0%
! AGAATTCATTGGAACTTTAT+AGG - chr7_1:39413585-39413604 None:intergenic 25.0%
!! GAAAAAAAAGAAAGAGTGTA+AGG - chr7_1:39413623-39413642 None:intergenic 25.0%
!!! TTCTTTTTTTTCACTTCTCT+TGG + chr7_1:39413631-39413650 Msa1018790:intron 25.0%
! TTAAAACTTCAACAAAATCG+TGG - chr7_1:39413879-39413898 None:intergenic 25.0%
! AAATTAGTGCATGCTTAAAT+TGG - chr7_1:39413949-39413968 None:intergenic 25.0%
! GCAAAGAATGTTACAAATTT+AGG - chr7_1:39414074-39414093 None:intergenic 25.0%
! AAATTTGTAACATTCTTTGC+AGG + chr7_1:39414074-39414093 Msa1018790:intron 25.0%
!! AATTCTAGAAGATTGATGAT+TGG + chr7_1:39414289-39414308 Msa1018790:CDS 25.0%
! ACTAACAACTAATTAGAAGA+AGG - chr7_1:39414551-39414570 None:intergenic 25.0%
! GAAAAGGAAACTTAACAAAT+AGG - chr7_1:39414640-39414659 None:intergenic 25.0%
!! GTATTTGGTTTGGGTAATAA+TGG - chr7_1:39413145-39413164 None:intergenic 30.0%
!! GATTGATTTGGTATTTGGTT+TGG - chr7_1:39413155-39413174 None:intergenic 30.0%
! CGTAATGATAGTGATTGATT+TGG - chr7_1:39413167-39413186 None:intergenic 30.0%
AATTACTAGATTGCCCATAA+TGG - chr7_1:39413194-39413213 None:intergenic 30.0%
GGCAATCTAGTAATTCTAAT+TGG + chr7_1:39413199-39413218 Msa1018790:five_prime_UTR 30.0%
AGAGGAACATGATCAAAAAA+AGG - chr7_1:39413270-39413289 None:intergenic 30.0%
GAAAGATAGGTAAGATAATG+TGG - chr7_1:39413348-39413367 None:intergenic 30.0%
AGATAAAGATGAGGAAAGAT+AGG - chr7_1:39413361-39413380 None:intergenic 30.0%
AACTTTAGCTGCAAGAATTA+AGG - chr7_1:39413505-39413524 None:intergenic 30.0%
AGCACTTCTCTAAATTATCA+AGG + chr7_1:39413976-39413995 Msa1018790:intron 30.0%
TTTGCAGGAATTGAAACAAA+AGG + chr7_1:39414089-39414108 Msa1018790:intron 30.0%
TTGCAGGAATTGAAACAAAA+GGG + chr7_1:39414090-39414109 Msa1018790:intron 30.0%
! TTCAAACTTAGTTCTCTTTG+AGG - chr7_1:39414137-39414156 None:intergenic 30.0%
TCAAAGAGAACTAAGTTTGA+AGG + chr7_1:39414136-39414155 Msa1018790:CDS 30.0%
CATTCATTGTAAGTACAAGT+TGG - chr7_1:39414325-39414344 None:intergenic 30.0%
TGTACTTACAATGAATGTAG+AGG + chr7_1:39414328-39414347 Msa1018790:CDS 30.0%
AAACACATCTGTAGTGATAA+GGG - chr7_1:39414414-39414433 None:intergenic 30.0%
!! GTATTTGGTTTGGGTAATAA+TGG - chr7_1:39413145-39413164 None:intergenic 30.0%
!! GATTGATTTGGTATTTGGTT+TGG - chr7_1:39413155-39413174 None:intergenic 30.0%
! CGTAATGATAGTGATTGATT+TGG - chr7_1:39413167-39413186 None:intergenic 30.0%
AATTACTAGATTGCCCATAA+TGG - chr7_1:39413194-39413213 None:intergenic 30.0%
GGCAATCTAGTAATTCTAAT+TGG + chr7_1:39413199-39413218 Msa1018790:five_prime_UTR 30.0%
AGAGGAACATGATCAAAAAA+AGG - chr7_1:39413270-39413289 None:intergenic 30.0%
GAAAGATAGGTAAGATAATG+TGG - chr7_1:39413348-39413367 None:intergenic 30.0%
AGATAAAGATGAGGAAAGAT+AGG - chr7_1:39413361-39413380 None:intergenic 30.0%
AACTTTAGCTGCAAGAATTA+AGG - chr7_1:39413505-39413524 None:intergenic 30.0%
AGCACTTCTCTAAATTATCA+AGG + chr7_1:39413976-39413995 Msa1018790:intron 30.0%
TTTGCAGGAATTGAAACAAA+AGG + chr7_1:39414089-39414108 Msa1018790:intron 30.0%
TTGCAGGAATTGAAACAAAA+GGG + chr7_1:39414090-39414109 Msa1018790:intron 30.0%
! TTCAAACTTAGTTCTCTTTG+AGG - chr7_1:39414137-39414156 None:intergenic 30.0%
TCAAAGAGAACTAAGTTTGA+AGG + chr7_1:39414136-39414155 Msa1018790:CDS 30.0%
CATTCATTGTAAGTACAAGT+TGG - chr7_1:39414325-39414344 None:intergenic 30.0%
TGTACTTACAATGAATGTAG+AGG + chr7_1:39414328-39414347 Msa1018790:CDS 30.0%
AAACACATCTGTAGTGATAA+GGG - chr7_1:39414414-39414433 None:intergenic 30.0%
TATCATTACGGTCTCCATTA+TGG + chr7_1:39413177-39413196 Msa1018790:five_prime_UTR 35.0%
ATCATTACGGTCTCCATTAT+GGG + chr7_1:39413178-39413197 Msa1018790:five_prime_UTR 35.0%
GCTAACTCATAGGAAATTCT+AGG - chr7_1:39413226-39413245 None:intergenic 35.0%
! TTTTGCCAGTCTATCTCTTA+TGG + chr7_1:39413303-39413322 Msa1018790:five_prime_UTR 35.0%
! AGAGTAGCATGAGTACTTTT+GGG - chr7_1:39413479-39413498 None:intergenic 35.0%
! AAGAGTAGCATGAGTACTTT+TGG - chr7_1:39413480-39413499 None:intergenic 35.0%
CTTGCAGCTAAAGTTATACA+AGG + chr7_1:39413510-39413529 Msa1018790:CDS 35.0%
AGAAGAAGGTGAGAATTCAT+TGG - chr7_1:39413596-39413615 None:intergenic 35.0%
TTAGTGCATGCTTAAATTGG+TGG - chr7_1:39413946-39413965 None:intergenic 35.0%
CAAACACATCTGTAGTGATA+AGG - chr7_1:39414415-39414434 None:intergenic 35.0%
TATCATTACGGTCTCCATTA+TGG + chr7_1:39413177-39413196 Msa1018790:five_prime_UTR 35.0%
ATCATTACGGTCTCCATTAT+GGG + chr7_1:39413178-39413197 Msa1018790:five_prime_UTR 35.0%
GCTAACTCATAGGAAATTCT+AGG - chr7_1:39413226-39413245 None:intergenic 35.0%
! TTTTGCCAGTCTATCTCTTA+TGG + chr7_1:39413303-39413322 Msa1018790:five_prime_UTR 35.0%
! AGAGTAGCATGAGTACTTTT+GGG - chr7_1:39413479-39413498 None:intergenic 35.0%
! AAGAGTAGCATGAGTACTTT+TGG - chr7_1:39413480-39413499 None:intergenic 35.0%
CTTGCAGCTAAAGTTATACA+AGG + chr7_1:39413510-39413529 Msa1018790:CDS 35.0%
AGAAGAAGGTGAGAATTCAT+TGG - chr7_1:39413596-39413615 None:intergenic 35.0%
TTAGTGCATGCTTAAATTGG+TGG - chr7_1:39413946-39413965 None:intergenic 35.0%
CAAACACATCTGTAGTGATA+AGG - chr7_1:39414415-39414434 None:intergenic 35.0%
GACTATAGTGGCTAACTCAT+AGG - chr7_1:39413236-39413255 None:intergenic 40.0%
! GTACTGAATGCTGACTATAG+TGG - chr7_1:39413248-39413267 None:intergenic 40.0%
CAAAATCTGCACTAAGACAG+AGG - chr7_1:39413288-39413307 None:intergenic 40.0%
AGTGACCATAAGAGATAGAC+TGG - chr7_1:39413311-39413330 None:intergenic 40.0%
! GGTAAGATAATGTGGTGTTG+TGG - chr7_1:39413340-39413359 None:intergenic 40.0%
!! CATGAGTACTTTTGGGAGTT+TGG - chr7_1:39413472-39413491 None:intergenic 40.0%
GAGTGTAAGGACTAAGAAGA+AGG - chr7_1:39413610-39413629 None:intergenic 40.0%
! TGCATGCTTAAATTGGTGGT+GGG - chr7_1:39413942-39413961 None:intergenic 40.0%
CAGGAATTGAAACAAAAGGG+TGG + chr7_1:39414093-39414112 Msa1018790:intron 40.0%
!! TAGTTCTCTTTGAGGTTGTG+AGG - chr7_1:39414129-39414148 None:intergenic 40.0%
TAGTGATAAGGGCTGTTGAT+GGG - chr7_1:39414403-39414422 None:intergenic 40.0%
GACTATAGTGGCTAACTCAT+AGG - chr7_1:39413236-39413255 None:intergenic 40.0%
! GTACTGAATGCTGACTATAG+TGG - chr7_1:39413248-39413267 None:intergenic 40.0%
CAAAATCTGCACTAAGACAG+AGG - chr7_1:39413288-39413307 None:intergenic 40.0%
AGTGACCATAAGAGATAGAC+TGG - chr7_1:39413311-39413330 None:intergenic 40.0%
! GGTAAGATAATGTGGTGTTG+TGG - chr7_1:39413340-39413359 None:intergenic 40.0%
!! CATGAGTACTTTTGGGAGTT+TGG - chr7_1:39413472-39413491 None:intergenic 40.0%
GAGTGTAAGGACTAAGAAGA+AGG - chr7_1:39413610-39413629 None:intergenic 40.0%
! TGCATGCTTAAATTGGTGGT+GGG - chr7_1:39413942-39413961 None:intergenic 40.0%
CAGGAATTGAAACAAAAGGG+TGG + chr7_1:39414093-39414112 Msa1018790:intron 40.0%
!! TAGTTCTCTTTGAGGTTGTG+AGG - chr7_1:39414129-39414148 None:intergenic 40.0%
TAGTGATAAGGGCTGTTGAT+GGG - chr7_1:39414403-39414422 None:intergenic 40.0%
GTGCATGCTTAAATTGGTGG+TGG - chr7_1:39413943-39413962 None:intergenic 45.0%
TTCAGGGTAGCAATGAAGCA+TGG + chr7_1:39414257-39414276 Msa1018790:intron 45.0%
!! GTAAGTACAAGTTGGTGCTG+TGG - chr7_1:39414317-39414336 None:intergenic 45.0%
AGTGATAAGGGCTGTTGATG+GGG - chr7_1:39414402-39414421 None:intergenic 45.0%
GTAGTGATAAGGGCTGTTGA+TGG - chr7_1:39414404-39414423 None:intergenic 45.0%
GTGCATGCTTAAATTGGTGG+TGG - chr7_1:39413943-39413962 None:intergenic 45.0%
TTCAGGGTAGCAATGAAGCA+TGG + chr7_1:39414257-39414276 Msa1018790:intron 45.0%
!! GTAAGTACAAGTTGGTGCTG+TGG - chr7_1:39414317-39414336 None:intergenic 45.0%
AGTGATAAGGGCTGTTGATG+GGG - chr7_1:39414402-39414421 None:intergenic 45.0%
GTAGTGATAAGGGCTGTTGA+TGG - chr7_1:39414404-39414423 None:intergenic 45.0%
CAGAGCTGAGCAAGTTCCTG+TGG + chr7_1:39414366-39414385 Msa1018790:CDS 55.0%
AGCTGAGCAAGTTCCTGTGG+AGG + chr7_1:39414369-39414388 Msa1018790:CDS 55.0%
GCTGAGCAAGTTCCTGTGGA+GGG + chr7_1:39414370-39414389 Msa1018790:CDS 55.0%
ATGGGGTCATTTCCCTCCAC+AGG - chr7_1:39414385-39414404 None:intergenic 55.0%
CAGAGCTGAGCAAGTTCCTG+TGG + chr7_1:39414366-39414385 Msa1018790:CDS 55.0%
AGCTGAGCAAGTTCCTGTGG+AGG + chr7_1:39414369-39414388 Msa1018790:CDS 55.0%
GCTGAGCAAGTTCCTGTGGA+GGG + chr7_1:39414370-39414389 Msa1018790:CDS 55.0%
ATGGGGTCATTTCCCTCCAC+AGG - chr7_1:39414385-39414404 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 39413073 39414675 39413073 ID=Msa1018790;Name=Msa1018790
chr7_1 mRNA 39413073 39414675 39413073 ID=Msa1018790-mRNA-1;Parent=Msa1018790;Name=Msa1018790-mRNA-1;_AED=0.19;_eAED=0.19;_QI=386|1|1|1|1|1|3|228|106
chr7_1 exon 39413073 39413531 39413073 ID=Msa1018790-mRNA-1:exon:7655;Parent=Msa1018790-mRNA-1
chr7_1 exon 39414096 39414157 39414096 ID=Msa1018790-mRNA-1:exon:7656;Parent=Msa1018790-mRNA-1
chr7_1 exon 39414262 39414675 39414262 ID=Msa1018790-mRNA-1:exon:7657;Parent=Msa1018790-mRNA-1
chr7_1 five_prime_UTR 39413073 39413458 39413073 ID=Msa1018790-mRNA-1:five_prime_utr;Parent=Msa1018790-mRNA-1
chr7_1 CDS 39413459 39413531 39413459 ID=Msa1018790-mRNA-1:cds;Parent=Msa1018790-mRNA-1
chr7_1 CDS 39414096 39414157 39414096 ID=Msa1018790-mRNA-1:cds;Parent=Msa1018790-mRNA-1
chr7_1 CDS 39414262 39414447 39414262 ID=Msa1018790-mRNA-1:cds;Parent=Msa1018790-mRNA-1
chr7_1 three_prime_UTR 39414448 39414675 39414448 ID=Msa1018790-mRNA-1:three_prime_utr;Parent=Msa1018790-mRNA-1
Gene Sequence

>Msa1018790

ATGGGTAACACCAAACTCCCAAAAGTACTCATGCTACTCTTGACCTTAATTCTTGCAGCTAAAGTTATACAAGGAATTGAAACAAAAGGGTGGATATCACAATCCTCACAACCTCAAAGAGAACTAAGTTTGAAGGGTAGCAATGAAGCATGGAAACAAAGAAATTCTAGAAGATTGATGATTGGATCCACAGCACCAACTTGTACTTACAATGAATGTAGAGGCTGCAAATATAGATGCAGAGCTGAGCAAGTTCCTGTGGAGGGAAATGACCCCATCAACAGCCCTTATCACTACAGATGTGTTTGTCATAGATCATGA

Protein sequence

>Msa1018790

MGNTKLPKVLMLLLTLILAAKVIQGIETKGWISQSSQPQRELSLKGSNEAWKQRNSRRLMIGSTAPTCTYNECRGCKYRCRAEQVPVEGNDPINSPYHYRCVCHRS*