Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340670 | XP_003594883.2 | 90.428 | 491 | 37 | 1 | 1 | 481 | 1 | 491 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340670 | sp|O49432|QRT3_ARATH | 49.383 | 486 | 217 | 8 | 6 | 481 | 13 | 479 | 1.08e-149 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340670 | A0A396JAJ4 | 90.428 | 491 | 37 | 1 | 1 | 481 | 1 | 491 | 0.0 | 867 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0707220 | Msa1340670 | 0.816512 | 5.322798e-52 | -8.615850e-47 |
| Msa0799210 | Msa1340670 | 0.801988 | 6.942035e-49 | -8.615850e-47 |
| Msa0139900 | Msa1340670 | 0.804409 | 2.190335e-49 | -8.615850e-47 |
| Msa0161200 | Msa1340670 | 0.824071 | 9.842806e-54 | -8.615850e-47 |
| Msa1340670 | Msa1420060 | 0.816596 | 5.097054e-52 | -8.615850e-47 |
| Msa1340670 | Msa1462440 | 0.918702 | 1.124467e-86 | -8.615850e-47 |
| Msa0413930 | Msa1340670 | 0.823883 | 1.089721e-53 | -8.615850e-47 |
| Msa0444010 | Msa1340670 | 0.802949 | 4.400084e-49 | -8.615850e-47 |
| Msa1018790 | Msa1340670 | 0.805847 | 1.095463e-49 | -8.615850e-47 |
| Msa0243700 | Msa1340670 | 0.940235 | 3.301591e-100 | -8.615850e-47 |
| Msa0282230 | Msa1340670 | 0.875478 | 2.986558e-68 | -8.615850e-47 |
| Msa0938430 | Msa1340670 | 0.820481 | 6.706150e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340670 | MtrunA17_Chr2g0297001 | 90.428 | 491 | 37 | 1 | 1 | 481 | 1 | 491 | 0.0 | 867 |
| Msa1340670 | MtrunA17_Chr4g0052711 | 68.478 | 460 | 140 | 3 | 25 | 481 | 23 | 480 | 0.0 | 627 |
| Msa1340670 | MtrunA17_Chr2g0296981 | 52.300 | 413 | 179 | 7 | 62 | 469 | 82 | 481 | 5.05e-140 | 411 |
| Msa1340670 | MtrunA17_Chr6g0455291 | 52.758 | 417 | 174 | 7 | 69 | 481 | 93 | 490 | 1.21e-133 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340670 | AT4G20040.1 | 63.850 | 426 | 147 | 5 | 58 | 481 | 63 | 483 | 0.0 | 551 |
| Msa1340670 | AT4G20050.7 | 49.383 | 486 | 217 | 8 | 6 | 481 | 13 | 479 | 1.10e-150 | 438 |
| Msa1340670 | AT4G20050.6 | 49.383 | 486 | 217 | 8 | 6 | 481 | 13 | 479 | 1.10e-150 | 438 |
| Msa1340670 | AT4G20050.2 | 49.383 | 486 | 217 | 8 | 6 | 481 | 13 | 479 | 1.10e-150 | 438 |
| Msa1340670 | AT4G20050.1 | 49.383 | 486 | 217 | 8 | 6 | 481 | 13 | 479 | 1.10e-150 | 438 |
| Msa1340670 | AT4G20050.5 | 49.383 | 486 | 217 | 8 | 6 | 481 | 38 | 504 | 1.16e-150 | 439 |
| Msa1340670 | AT4G20050.4 | 54.250 | 400 | 159 | 7 | 87 | 481 | 1 | 381 | 1.54e-137 | 401 |
| Msa1340670 | AT4G20050.3 | 54.250 | 400 | 159 | 7 | 87 | 481 | 1 | 381 | 1.54e-137 | 401 |
Find 91 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGATATTGATAATTT+AGG | 0.107857 | tig0004309:-20932 | Msa1340670:CDS |
| ACAATTGGAACATTATTATT+AGG | 0.129299 | tig0004309:+18314 | None:intergenic |
| TCAATTAAAGGGAAAGTTTA+TGG | 0.147921 | tig0004309:-18371 | Msa1340670:CDS |
| GGATCTGCACCATACTTAAT+TGG | 0.153680 | tig0004309:+21004 | None:intergenic |
| TACAATGTTATGTTTGATTT+TGG | 0.172791 | tig0004309:+21501 | None:intergenic |
| AGCATTTCTCTTGTCACTTT+TGG | 0.197047 | tig0004309:-21442 | Msa1340670:CDS |
| CATTTGATATTGATAATTTA+GGG | 0.251344 | tig0004309:-20931 | Msa1340670:CDS |
| GTTCCAATTGTGAAATTAGA+TGG | 0.269638 | tig0004309:-18302 | Msa1340670:CDS |
| CATCAATGACCAAAGGTAAA+TGG | 0.278889 | tig0004309:-19043 | Msa1340670:intron |
| CAATTGGAACATTATTATTA+GGG | 0.285274 | tig0004309:+18315 | None:intergenic |
| TATAACAAAGCAACAGGTTT+TGG | 0.286379 | tig0004309:-18545 | Msa1340670:CDS |
| ATTGTTAACAATATGTTTAG+TGG | 0.301676 | tig0004309:-18341 | Msa1340670:CDS |
| TGAAAATGACTAATCCTATT+AGG | 0.302520 | tig0004309:+18140 | None:intergenic |
| CAGCCATAGGAATTGTTGTT+AGG | 0.306110 | tig0004309:-18601 | Msa1340670:CDS |
| TGGATGGTAATGGCACAAAA+TGG | 0.367127 | tig0004309:-18193 | Msa1340670:CDS |
| AAATGTTTCAGAAGCTCTTA+AGG | 0.373297 | tig0004309:+19015 | None:intergenic |
| TACTTGATATGAAGGTTTCA+TGG | 0.388165 | tig0004309:+18741 | None:intergenic |
| CCTCCAAGGTCTCTAATTCC+TGG | 0.397675 | tig0004309:+20896 | None:intergenic |
| CATTGTTATAACAAAGCAAC+AGG | 0.404226 | tig0004309:-18551 | Msa1340670:CDS |
| TAATTCCTTCGGTGGTGAAA+TGG | 0.411730 | tig0004309:+18777 | None:intergenic |
| ACTTTGAACTTTAATTCCTT+CGG | 0.420815 | tig0004309:+18766 | None:intergenic |
| TTCGTAACATGAACTTGAAC+AGG | 0.426663 | tig0004309:+18431 | None:intergenic |
| TTGTTCAAGTAATCTGTTGT+TGG | 0.430783 | tig0004309:+18922 | None:intergenic |
| AATTCATTGTTCAACAAAGA+AGG | 0.431005 | tig0004309:+18007 | None:intergenic |
| ACTGAATGTGCAACAAACTT+TGG | 0.434126 | tig0004309:+18092 | None:intergenic |
| AAGAAAACTACTTGATATGA+AGG | 0.434177 | tig0004309:+18733 | None:intergenic |
| AGCTTCTACAGCTTTCATAA+TGG | 0.438110 | tig0004309:+20955 | None:intergenic |
| AAGTATGGTGCAGATCCAAC+AGG | 0.439437 | tig0004309:-20998 | Msa1340670:CDS |
| ATATTCATTTCATGCATTAG+AGG | 0.439787 | tig0004309:-18117 | Msa1340670:CDS |
| GATCTGCACCATACTTAATT+GGG | 0.441924 | tig0004309:+21005 | None:intergenic |
| ATCACATTTCCTTCATCGGC+TGG | 0.454793 | tig0004309:-20827 | Msa1340670:CDS |
| AGATTACTTGAACAAACAAT+AGG | 0.463517 | tig0004309:-18914 | Msa1340670:CDS |
| TCCCATCACATTTCCTTCAT+CGG | 0.471050 | tig0004309:-20831 | Msa1340670:CDS |
| AGCCATAGGAATTGTTGTTA+GGG | 0.472547 | tig0004309:-18600 | Msa1340670:CDS |
| GAAAGTGAGAAACCAGTTCA+TGG | 0.473042 | tig0004309:-18038 | Msa1340670:CDS |
| TTCCAATTGTGAAATTAGAT+GGG | 0.473930 | tig0004309:-18301 | Msa1340670:CDS |
| AAGGAAACAACCCCATGAAC+TGG | 0.475950 | tig0004309:+18026 | None:intergenic |
| TTACCAGGAATTAGAGACCT+TGG | 0.494991 | tig0004309:-20899 | Msa1340670:CDS |
| TCCCCTAACAACAATTCCTA+TGG | 0.501817 | tig0004309:+18598 | None:intergenic |
| TATTCATTTCATGCATTAGA+GGG | 0.507592 | tig0004309:-18116 | Msa1340670:CDS |
| AAGAATTGATAATTGTTACA+TGG | 0.510868 | tig0004309:-18480 | Msa1340670:CDS |
| GTCAAATAATGTTGTAGTTG+TGG | 0.512201 | tig0004309:-18060 | Msa1340670:CDS |
| TTAGGGCTTGAATTATTACC+AGG | 0.514044 | tig0004309:-20914 | Msa1340670:CDS |
| TTCTACGTGTTCATTGAAGC+AGG | 0.514067 | tig0004309:+21395 | None:intergenic |
| TTCCTCCATTTCACCACCGA+AGG | 0.521417 | tig0004309:-18782 | Msa1340670:CDS |
| TCAACAAGGTGTCTATCAGT+TGG | 0.524915 | tig0004309:+18992 | None:intergenic |
| GTGGTGTACCCAATTAAGTA+TGG | 0.526549 | tig0004309:-21013 | Msa1340670:CDS |
| ACAAGATTGCCAGCCGATGA+AGG | 0.526613 | tig0004309:+20818 | None:intergenic |
| CTTGGACAACACTCAACAGT+CGG | 0.527472 | tig0004309:-18713 | Msa1340670:CDS |
| GTTCAAGTTCATGTTACGAA+TGG | 0.528355 | tig0004309:-18428 | Msa1340670:CDS |
| GATTGGAAAATGAAGAAGAG+TGG | 0.536042 | tig0004309:-21040 | Msa1340670:intron |
| GATTCAAGTTACCGAGGTGG+AGG | 0.539152 | tig0004309:-18851 | Msa1340670:CDS |
| TTGAACTTTAATTCCTTCGG+TGG | 0.542054 | tig0004309:+18769 | None:intergenic |
| ATTGATATGAACAATGTGAT+TGG | 0.543536 | tig0004309:-18251 | Msa1340670:CDS |
| TGGTAATGGCACAAAATGGG+TGG | 0.549729 | tig0004309:-18189 | Msa1340670:CDS |
| GGATGGTAATGGCACAAAAT+GGG | 0.551911 | tig0004309:-18192 | Msa1340670:CDS |
| GGATTATAATTCTATAGTCA+TGG | 0.563335 | tig0004309:-18459 | Msa1340670:CDS |
| AAAGTGAGAAACCAGTTCAT+GGG | 0.566325 | tig0004309:-18037 | Msa1340670:CDS |
| TTCATCGGCTGGCAATCTTG+TGG | 0.566505 | tig0004309:-20816 | Msa1340670:intron |
| TCAACAGTCGGCGGAGACAA+AGG | 0.569193 | tig0004309:-18701 | Msa1340670:CDS |
| AATGAAGAAGAGTGGAAGAG+TGG | 0.571785 | tig0004309:-21032 | Msa1340670:intron |
| TTCCTTCGGTGGTGAAATGG+AGG | 0.577526 | tig0004309:+18780 | None:intergenic |
| GCCGATGAAGGAAATGTGAT+GGG | 0.577733 | tig0004309:+20830 | None:intergenic |
| CCAGGAATTAGAGACCTTGG+AGG | 0.587401 | tig0004309:-20896 | Msa1340670:CDS |
| AAGTGACAAGAGAAATGCTA+AGG | 0.588861 | tig0004309:+21446 | None:intergenic |
| GGACAAGCTAACATGATCAC+AGG | 0.590351 | tig0004309:-18578 | Msa1340670:CDS |
| ATTTAGTGACATTGATCAAG+TGG | 0.593403 | tig0004309:-18276 | Msa1340670:CDS |
| TCCAATTGTGAAATTAGATG+GGG | 0.603106 | tig0004309:-18300 | Msa1340670:CDS |
| TACGTGTTCATTGAAGCAGG+TGG | 0.603710 | tig0004309:+21398 | None:intergenic |
| CTCGGTAACTTGAATCGAAG+AGG | 0.611266 | tig0004309:+18858 | None:intergenic |
| AGCCGATGAAGGAAATGTGA+TGG | 0.612995 | tig0004309:+20829 | None:intergenic |
| AAGTTGAATGTGGATGGTAA+TGG | 0.619073 | tig0004309:-18203 | Msa1340670:CDS |
| AATCAATGATAACACCTCCA+AGG | 0.627415 | tig0004309:+20882 | None:intergenic |
| AACCGTTGGGAAGTTGAATG+TGG | 0.628722 | tig0004309:-18213 | Msa1340670:CDS |
| TGCTGAGAAAATTGCAACAT+CGG | 0.630023 | tig0004309:+18622 | None:intergenic |
| GTGTGAAGATGGCTGAGACA+TGG | 0.634929 | tig0004309:+21326 | None:intergenic |
| TTCGATTCAAGTTACCGAGG+TGG | 0.636613 | tig0004309:-18854 | Msa1340670:CDS |
| GCCATAGGAATTGTTGTTAG+GGG | 0.637301 | tig0004309:-18599 | Msa1340670:CDS |
| CCAATTGTGAAATTAGATGG+GGG | 0.638303 | tig0004309:-18299 | Msa1340670:CDS |
| GGTAATGGCACAAAATGGGT+GGG | 0.641219 | tig0004309:-18188 | Msa1340670:CDS |
| AGTATGGTGCAGATCCAACA+GGG | 0.649273 | tig0004309:-20997 | Msa1340670:CDS |
| ATCCACATTCAACTTCCCAA+CGG | 0.649744 | tig0004309:+18211 | None:intergenic |
| TTGATGCATTTAATTCAACA+AGG | 0.650431 | tig0004309:+18978 | None:intergenic |
| AAGTGAGAAACCAGTTCATG+GGG | 0.654495 | tig0004309:-18036 | Msa1340670:CDS |
| GTTGGGAAGTTGAATGTGGA+TGG | 0.656072 | tig0004309:-18209 | Msa1340670:CDS |
| GAAGGAATTAAAGTTCAAAG+TGG | 0.662811 | tig0004309:-18764 | Msa1340670:CDS |
| CAATGACCAAAGGTAAATGG+AGG | 0.667241 | tig0004309:-19040 | Msa1340670:intron |
| CTCTTCGATTCAAGTTACCG+AGG | 0.668555 | tig0004309:-18857 | Msa1340670:CDS |
| GGACAACACTCAACAGTCGG+CGG | 0.701448 | tig0004309:-18710 | Msa1340670:CDS |
| CGATGAATATTCCTCCACCT+CGG | 0.718566 | tig0004309:+18840 | None:intergenic |
| GTATGGTGCAGATCCAACAG+GGG | 0.763386 | tig0004309:-20996 | Msa1340670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGATGATTTTAAT+TGG | - | tig0004309:18269-18288 | Msa1340670:CDS | 10.0% |
| !! | CTAATTTATATAACAAATTA+AGG | + | tig0004309:18819-18838 | None:intergenic | 10.0% |
| !!! | TTTTGATAATATTTATTATG+AGG | - | tig0004309:19209-19228 | Msa1340670:intron | 10.0% |
| !! | AGAGAAAAATATTTATTTAT+AGG | + | tig0004309:19306-19325 | None:intergenic | 10.0% |
| !!! | ATGAGATTTTAAAAAAATTA+TGG | - | tig0004309:19602-19621 | Msa1340670:intron | 10.0% |
| !! | TCAAAATAATAAATTTGTAT+TGG | - | tig0004309:19928-19947 | Msa1340670:intron | 10.0% |
| !! | AAAAATTGTTAAGCAAAAAA+TGG | - | tig0004309:18155-18174 | Msa1340670:CDS | 15.0% |
| !!! | CATTTTATACAATGAAAAAA+AGG | + | tig0004309:18415-18434 | None:intergenic | 15.0% |
| !!! | CATTTGATATTGATAATTTA+GGG | - | tig0004309:18579-18598 | Msa1340670:CDS | 15.0% |
| !!! | AATAAAACATTATTTGGAAT+GGG | + | tig0004309:19174-19193 | None:intergenic | 15.0% |
| !! | AAATAAAACATTATTTGGAA+TGG | + | tig0004309:19175-19194 | None:intergenic | 15.0% |
| !!! | TCTCTTTTGATTTTTTTTAT+TGG | - | tig0004309:19321-19340 | Msa1340670:intron | 15.0% |
| !!! | TCAAATTTAATTTGTAAACA+TGG | - | tig0004309:19718-19737 | Msa1340670:intron | 15.0% |
| !!! | GGAATTTTTTTTTTTGAATA+AGG | - | tig0004309:19793-19812 | Msa1340670:intron | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | + | tig0004309:20145-20164 | None:intergenic | 15.0% |
| !! | AAATCATAACATAACAATAT+TGG | - | tig0004309:20342-20361 | Msa1340670:intron | 15.0% |
| !! | AATAATATGTAAAAGTTAAG+TGG | + | tig0004309:20426-20445 | None:intergenic | 15.0% |
| !!! | ATTGTTTTGAAATCAATTAA+AGG | - | tig0004309:21127-21146 | Msa1340670:intron | 15.0% |
| !!! | TTGTTTTGAAATCAATTAAA+GGG | - | tig0004309:21128-21147 | Msa1340670:intron | 15.0% |
| !! | AATCATCAAAAAAAATTCCT+AGG | + | tig0004309:18264-18283 | None:intergenic | 20.0% |
| !!! | CATTTTTTTAACATTGTTTG+AGG | - | tig0004309:18340-18359 | Msa1340670:CDS | 20.0% |
| !!! | GCATTTGATATTGATAATTT+AGG | - | tig0004309:18578-18597 | Msa1340670:CDS | 20.0% |
| !!! | ATAAAACATTATTTGGAATG+GGG | + | tig0004309:19173-19192 | None:intergenic | 20.0% |
| !! | TCGATTCAATAGAATAAAAA+AGG | - | tig0004309:19560-19579 | Msa1340670:intron | 20.0% |
| !!! | AGTTGCAAAATTTTATTGAA+AGG | + | tig0004309:20002-20021 | None:intergenic | 20.0% |
| !! | ACATCTACTTTAATAGTTTA+TGG | - | tig0004309:20183-20202 | Msa1340670:intron | 20.0% |
| !!! | AAGAATTGATAATTGTTACA+TGG | - | tig0004309:21030-21049 | Msa1340670:intron | 20.0% |
| !! | ATTGTTAACAATATGTTTAG+TGG | - | tig0004309:21169-21188 | Msa1340670:intron | 20.0% |
| !! | CAATTGGAACATTATTATTA+GGG | + | tig0004309:21198-21217 | None:intergenic | 20.0% |
| !! | ACAATTGGAACATTATTATT+AGG | + | tig0004309:21199-21218 | None:intergenic | 20.0% |
| !! | ATATTATTTTCCTTCTTCCT+AGG | - | tig0004309:18244-18263 | Msa1340670:CDS | 25.0% |
| ! | AAAAAAAATTCCTAGGAAGA+AGG | + | tig0004309:18257-18276 | None:intergenic | 25.0% |
| !!! | TTAACTCTTAACTTGTTTTC+TGG | + | tig0004309:19012-19031 | None:intergenic | 25.0% |
| ! | TAAGAGTTAAAACAAAGAAG+AGG | - | tig0004309:19022-19041 | Msa1340670:CDS | 25.0% |
| ! | AAGAGTTAAAACAAAGAAGA+GGG | - | tig0004309:19023-19042 | Msa1340670:CDS | 25.0% |
| !! | TTTTCTTGAATGATTCTTGA+AGG | + | tig0004309:19145-19164 | None:intergenic | 25.0% |
| !! | TATTCAATGCAAGAACATTT+TGG | + | tig0004309:19349-19368 | None:intergenic | 25.0% |
| !!! | ATCAGTAGATATTTTTGAAG+AGG | - | tig0004309:19772-19791 | Msa1340670:intron | 25.0% |
| ! | TTCTATGATGTACATATGTT+AGG | - | tig0004309:19901-19920 | Msa1340670:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | tig0004309:20289-20308 | None:intergenic | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+AGG | + | tig0004309:20058-20077 | None:intergenic | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | - | tig0004309:20248-20267 | Msa1340670:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | - | tig0004309:20284-20303 | Msa1340670:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | tig0004309:20289-20308 | Msa1340670:intron | 25.0% |
| ! | TCATAACATAACAATATTGG+AGG | - | tig0004309:20345-20364 | Msa1340670:intron | 25.0% |
| ! | CATAACATAACAATATTGGA+GGG | - | tig0004309:20346-20365 | Msa1340670:intron | 25.0% |
| ! | TTGATGCATTTAATTCAACA+AGG | + | tig0004309:20535-20554 | None:intergenic | 25.0% |
| ! | AGATTACTTGAACAAACAAT+AGG | - | tig0004309:20596-20615 | Msa1340670:intron | 25.0% |
| ! | ACTTTGAACTTTAATTCCTT+CGG | + | tig0004309:20747-20766 | None:intergenic | 25.0% |
| ! | AAGAAAACTACTTGATATGA+AGG | + | tig0004309:20780-20799 | None:intergenic | 25.0% |
| !! | TTCATATCAAGTAGTTTTCT+TGG | - | tig0004309:20779-20798 | Msa1340670:intron | 25.0% |
| ! | GGATTATAATTCTATAGTCA+TGG | - | tig0004309:21051-21070 | Msa1340670:intron | 25.0% |
| !!! | TTACGAATGGTTTTTTCTTA+GGG | - | tig0004309:21095-21114 | Msa1340670:intron | 25.0% |
| ! | TCAATTAAAGGGAAAGTTTA+TGG | - | tig0004309:21139-21158 | Msa1340670:intron | 25.0% |
| ! | TTCCAATTGTGAAATTAGAT+GGG | - | tig0004309:21209-21228 | Msa1340670:intron | 25.0% |
| ! | ATTGATATGAACAATGTGAT+TGG | - | tig0004309:21259-21278 | Msa1340670:intron | 25.0% |
| !!! | ATGTTTTGGTATTTCCTAAT+AGG | - | tig0004309:21356-21375 | Msa1340670:CDS | 25.0% |
| ! | TGAAAATGACTAATCCTATT+AGG | + | tig0004309:21373-21392 | None:intergenic | 25.0% |
| ! | ATATTCATTTCATGCATTAG+AGG | - | tig0004309:21393-21412 | Msa1340670:CDS | 25.0% |
| ! | TATTCATTTCATGCATTAGA+GGG | - | tig0004309:21394-21413 | Msa1340670:CDS | 25.0% |
| !!! | ACCTTTTTTTTGTGTGAAGA+TGG | + | tig0004309:18198-18217 | None:intergenic | 30.0% |
| !!! | GGTGTTATCATTGATTTTCA+AGG | - | tig0004309:18635-18654 | Msa1340670:CDS | 30.0% |
| !!! | GTTATCATTGATTTTCAAGG+TGG | - | tig0004309:18638-18657 | Msa1340670:CDS | 30.0% |
| ATCAATCAAAGTAGTAAAGG+AGG | + | tig0004309:18755-18774 | None:intergenic | 30.0% | |
| TGCATCAATCAAAGTAGTAA+AGG | + | tig0004309:18758-18777 | None:intergenic | 30.0% | |
| ! | AGAACTCGAAAAAAGTACAA+GGG | - | tig0004309:18974-18993 | Msa1340670:CDS | 30.0% |
| TGGAGTTATTAAGAAATTGC+AGG | + | tig0004309:19414-19433 | None:intergenic | 30.0% | |
| TTGAGTGAGACTTAAATTGA+TGG | + | tig0004309:19434-19453 | None:intergenic | 30.0% | |
| TCTCACCAAACAATACTAAA+GGG | - | tig0004309:19476-19495 | Msa1340670:intron | 30.0% | |
| !! | GATTTGTTCATTTTCCAACA+AGG | + | tig0004309:19538-19557 | None:intergenic | 30.0% |
| ATCAAAAGAAAAGGAATGGA+TGG | + | tig0004309:20293-20312 | None:intergenic | 30.0% | |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | - | tig0004309:20060-20079 | Msa1340670:intron | 30.0% |
| ATTCACATGTGATAAACCAA+AGG | - | tig0004309:20158-20177 | Msa1340670:intron | 30.0% | |
| ATTAAAGTAGATGTGACCTT+TGG | + | tig0004309:20177-20196 | None:intergenic | 30.0% | |
| ! | TTTATGGTGTTTTCCAACAA+GGG | - | tig0004309:20199-20218 | Msa1340670:intron | 30.0% |
| ATCAAAAGAAAAGGAATGGA+GGG | - | tig0004309:20293-20312 | Msa1340670:intron | 30.0% | |
| ! | ACTTTTACATCAATGACCAA+AGG | - | tig0004309:20460-20479 | Msa1340670:intron | 30.0% |
| AAATGTTTCAGAAGCTCTTA+AGG | + | tig0004309:20498-20517 | None:intergenic | 30.0% | |
| TTGTTCAAGTAATCTGTTGT+TGG | + | tig0004309:20591-20610 | None:intergenic | 30.0% | |
| GAAGGAATTAAAGTTCAAAG+TGG | - | tig0004309:20746-20765 | Msa1340670:intron | 30.0% | |
| TACTTGATATGAAGGTTTCA+TGG | + | tig0004309:20772-20791 | None:intergenic | 30.0% | |
| ! | CAAAGGTGAAAGACAATTTT+CGG | - | tig0004309:20826-20845 | Msa1340670:CDS | 30.0% |
| ! | AAAGGTGAAAGACAATTTTC+GGG | - | tig0004309:20827-20846 | Msa1340670:CDS | 30.0% |
| CATTGTTATAACAAAGCAAC+AGG | - | tig0004309:20959-20978 | Msa1340670:CDS | 30.0% | |
| ! | TATAACAAAGCAACAGGTTT+TGG | - | tig0004309:20965-20984 | Msa1340670:CDS | 30.0% |
| ! | GAATTTTGTTGAAGTTAGCA+GGG | - | tig0004309:20996-21015 | Msa1340670:CDS | 30.0% |
| !!! | GTTACGAATGGTTTTTTCTT+AGG | - | tig0004309:21094-21113 | Msa1340670:intron | 30.0% |
| !!! | TACGAATGGTTTTTTCTTAG+GGG | - | tig0004309:21096-21115 | Msa1340670:intron | 30.0% |
| GTTCCAATTGTGAAATTAGA+TGG | - | tig0004309:21208-21227 | Msa1340670:intron | 30.0% | |
| TCCAATTGTGAAATTAGATG+GGG | - | tig0004309:21210-21229 | Msa1340670:intron | 30.0% | |
| ATTTAGTGACATTGATCAAG+TGG | - | tig0004309:21234-21253 | Msa1340670:intron | 30.0% | |
| !!! | ATGATTTTAAGATCAACCGT+TGG | - | tig0004309:21283-21302 | Msa1340670:intron | 30.0% |
| !!! | TGATTTTAAGATCAACCGTT+GGG | - | tig0004309:21284-21303 | Msa1340670:intron | 30.0% |
| !! | GGGTGATTTTTCAAATGTTT+TGG | - | tig0004309:21342-21361 | Msa1340670:CDS | 30.0% |
| GTCAAATAATGTTGTAGTTG+TGG | - | tig0004309:21450-21469 | Msa1340670:CDS | 30.0% | |
| AAGTGACAAGAGAAATGCTA+AGG | + | tig0004309:18067-18086 | None:intergenic | 35.0% | |
| !!! | AGCATTTCTCTTGTCACTTT+TGG | - | tig0004309:18068-18087 | Msa1340670:CDS | 35.0% |
| GCCATCTTCACACAAAAAAA+AGG | - | tig0004309:18194-18213 | Msa1340670:CDS | 35.0% | |
| ACAATCTCATTCTCTCTATG+TGG | - | tig0004309:18442-18461 | Msa1340670:CDS | 35.0% | |
| ! | TCATTCTCTCTATGTGGTTT+TGG | - | tig0004309:18448-18467 | Msa1340670:CDS | 35.0% |
| GATTGGAAAATGAAGAAGAG+TGG | - | tig0004309:18470-18489 | Msa1340670:CDS | 35.0% | |
| GATCTGCACCATACTTAATT+GGG | + | tig0004309:18508-18527 | None:intergenic | 35.0% | |
| AGCTTCTACAGCTTTCATAA+TGG | + | tig0004309:18558-18577 | None:intergenic | 35.0% | |
| TTAGGGCTTGAATTATTACC+AGG | - | tig0004309:18596-18615 | Msa1340670:CDS | 35.0% | |
| AATCAATGATAACACCTCCA+AGG | + | tig0004309:18631-18650 | None:intergenic | 35.0% | |
| CAAAGTAGTAAAGGAGGAAA+AGG | + | tig0004309:18749-18768 | None:intergenic | 35.0% | |
| ! | CAGAACTCGAAAAAAGTACA+AGG | - | tig0004309:18973-18992 | Msa1340670:CDS | 35.0% |
| !!! | CTCTTAACTTGTTTTCTGGT+GGG | + | tig0004309:19008-19027 | None:intergenic | 35.0% |
| !!! | ACTCTTAACTTGTTTTCTGG+TGG | + | tig0004309:19009-19028 | None:intergenic | 35.0% |
| !!! | AACCTCAATTTTTTCGTAGC+TGG | - | tig0004309:19073-19092 | Msa1340670:intron | 35.0% |
| TTCCAGCTACGAAAAAATTG+AGG | + | tig0004309:19078-19097 | None:intergenic | 35.0% | |
| ! | AGTGGGTTCAAAATTGTTAG+AGG | + | tig0004309:19457-19476 | None:intergenic | 35.0% |
| ! | TAGTATTGTTTGGTGAGAGT+GGG | + | tig0004309:19474-19493 | None:intergenic | 35.0% |
| ! | TTAGTATTGTTTGGTGAGAG+TGG | + | tig0004309:19475-19494 | None:intergenic | 35.0% |
| CTCTCACCAAACAATACTAA+AGG | - | tig0004309:19475-19494 | Msa1340670:intron | 35.0% | |
| CTCACCAAACAATACTAAAG+GGG | - | tig0004309:19477-19496 | Msa1340670:intron | 35.0% | |
| TCACCAAACAATACTAAAGG+GGG | - | tig0004309:19478-19497 | Msa1340670:intron | 35.0% | |
| ! | TTCATTTTCCAACAAGGCTT+TGG | + | tig0004309:19532-19551 | None:intergenic | 35.0% |
| GCACAAACCAGACAAAATAA+AGG | - | tig0004309:19672-19691 | Msa1340670:intron | 35.0% | |
| !!! | CAGATCTCCTTTATTTTGTC+TGG | + | tig0004309:19682-19701 | None:intergenic | 35.0% |
| ! | TTATCTGTTTTGCACTGCTA+AGG | + | tig0004309:19842-19861 | None:intergenic | 35.0% |
| GGATGGAGTAAGATGTTAAA+AGG | + | tig0004309:20032-20051 | None:intergenic | 35.0% | |
| ! | GTTTATGGTGTTTTCCAACA+AGG | - | tig0004309:20198-20217 | Msa1340670:intron | 35.0% |
| TTTCTCAAGTTTACCCTTGT+TGG | + | tig0004309:20215-20234 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | - | tig0004309:20292-20311 | Msa1340670:intron | 35.0% | |
| CATCAATGACCAAAGGTAAA+TGG | - | tig0004309:20467-20486 | Msa1340670:intron | 35.0% | |
| ! | TGCTTTTGTTGCATTTTGGA+GGG | + | tig0004309:20567-20586 | None:intergenic | 35.0% |
| ! | ATGCTTTTGTTGCATTTTGG+AGG | + | tig0004309:20568-20587 | None:intergenic | 35.0% |
| ! | TGGATGCTTTTGTTGCATTT+TGG | + | tig0004309:20571-20590 | None:intergenic | 35.0% |
| TTGAACTTTAATTCCTTCGG+TGG | + | tig0004309:20744-20763 | None:intergenic | 35.0% | |
| TGCTGAGAAAATTGCAACAT+CGG | + | tig0004309:20891-20910 | None:intergenic | 35.0% | |
| ! | AGCCATAGGAATTGTTGTTA+GGG | - | tig0004309:20910-20929 | Msa1340670:CDS | 35.0% |
| ! | GGAATTTTGTTGAAGTTAGC+AGG | - | tig0004309:20995-21014 | Msa1340670:CDS | 35.0% |
| TTCGTAACATGAACTTGAAC+AGG | + | tig0004309:21082-21101 | None:intergenic | 35.0% | |
| ! | GTTCAAGTTCATGTTACGAA+TGG | - | tig0004309:21082-21101 | Msa1340670:intron | 35.0% |
| !!! | AATGGTTTTTTCTTAGGGGA+TGG | - | tig0004309:21100-21119 | Msa1340670:intron | 35.0% |
| CCAATTGTGAAATTAGATGG+GGG | - | tig0004309:21211-21230 | Msa1340670:intron | 35.0% | |
| AAGTTGAATGTGGATGGTAA+TGG | - | tig0004309:21307-21326 | Msa1340670:intron | 35.0% | |
| ACTGAATGTGCAACAAACTT+TGG | + | tig0004309:21421-21440 | None:intergenic | 35.0% | |
| AAAGTGAGAAACCAGTTCAT+GGG | - | tig0004309:21473-21492 | Msa1340670:exon | 35.0% | |
| TTCTACGTGTTCATTGAAGC+AGG | + | tig0004309:18118-18137 | None:intergenic | 40.0% | |
| !!! | CTCTCTATGTGGTTTTGGAT+TGG | - | tig0004309:18453-18472 | Msa1340670:CDS | 40.0% |
| AATGAAGAAGAGTGGAAGAG+TGG | - | tig0004309:18478-18497 | Msa1340670:CDS | 40.0% | |
| GTGGTGTACCCAATTAAGTA+TGG | - | tig0004309:18497-18516 | Msa1340670:CDS | 40.0% | |
| GGATCTGCACCATACTTAAT+TGG | + | tig0004309:18509-18528 | None:intergenic | 40.0% | |
| TTACCAGGAATTAGAGACCT+TGG | - | tig0004309:18611-18630 | Msa1340670:CDS | 40.0% | |
| TCCCATCACATTTCCTTCAT+CGG | - | tig0004309:18679-18698 | Msa1340670:CDS | 40.0% | |
| !! | ACCTCGAAGAGGTTGATATA+CGG | - | tig0004309:19101-19120 | Msa1340670:intron | 40.0% |
| TAGCCCCCTTTAGTATTGTT+TGG | + | tig0004309:19484-19503 | None:intergenic | 40.0% | |
| !! | ACAAGGCTTTGGATTTCTCA+AGG | + | tig0004309:19521-19540 | None:intergenic | 40.0% |
| ! | TGAGAAATCCAAAGCCTTGT+TGG | - | tig0004309:19521-19540 | Msa1340670:intron | 40.0% |
| ! | AGCTCTTGGCACAAGTTTTA+AGG | - | tig0004309:20074-20093 | Msa1340670:intron | 40.0% |
| CAATGACCAAAGGTAAATGG+AGG | - | tig0004309:20470-20489 | Msa1340670:intron | 40.0% | |
| AAGGTTCCTCCATTTACCTT+TGG | + | tig0004309:20479-20498 | None:intergenic | 40.0% | |
| ! | TCAACAAGGTGTCTATCAGT+TGG | + | tig0004309:20521-20540 | None:intergenic | 40.0% |
| !! | TGTTGCATTTTGGAGGGTTT+TGG | + | tig0004309:20561-20580 | None:intergenic | 40.0% |
| TAATTCCTTCGGTGGTGAAA+TGG | + | tig0004309:20736-20755 | None:intergenic | 40.0% | |
| ! | CAGCCATAGGAATTGTTGTT+AGG | - | tig0004309:20909-20928 | Msa1340670:CDS | 40.0% |
| ! | GCCATAGGAATTGTTGTTAG+GGG | - | tig0004309:20911-20930 | Msa1340670:CDS | 40.0% |
| TCCCCTAACAACAATTCCTA+TGG | + | tig0004309:20915-20934 | None:intergenic | 40.0% | |
| !! | AACAAAGCAACAGGTTTTGG+TGG | - | tig0004309:20968-20987 | Msa1340670:CDS | 40.0% |
| CCCCCATCTAATTTCACAAT+TGG | + | tig0004309:21214-21233 | None:intergenic | 40.0% | |
| ATCCACATTCAACTTCCCAA+CGG | + | tig0004309:21302-21321 | None:intergenic | 40.0% | |
| !! | TGGATGGTAATGGCACAAAA+TGG | - | tig0004309:21317-21336 | Msa1340670:CDS | 40.0% |
| !! | GGATGGTAATGGCACAAAAT+GGG | - | tig0004309:21318-21337 | Msa1340670:CDS | 40.0% |
| GAAAGTGAGAAACCAGTTCA+TGG | - | tig0004309:21472-21491 | Msa1340670:exon | 40.0% | |
| AAGTGAGAAACCAGTTCATG+GGG | - | tig0004309:21474-21493 | Msa1340670:exon | 40.0% | |
| TACGTGTTCATTGAAGCAGG+TGG | + | tig0004309:18115-18134 | None:intergenic | 45.0% | |
| AAGTATGGTGCAGATCCAAC+AGG | - | tig0004309:18512-18531 | Msa1340670:CDS | 45.0% | |
| AGTATGGTGCAGATCCAACA+GGG | - | tig0004309:18513-18532 | Msa1340670:CDS | 45.0% | |
| ! | CTGCTTTCATTTTCCCCTGT+TGG | + | tig0004309:18530-18549 | None:intergenic | 45.0% |
| GCCGATGAAGGAAATGTGAT+GGG | + | tig0004309:18683-18702 | None:intergenic | 45.0% | |
| AGCCGATGAAGGAAATGTGA+TGG | + | tig0004309:18684-18703 | None:intergenic | 45.0% | |
| ATCACATTTCCTTCATCGGC+TGG | - | tig0004309:18683-18702 | Msa1340670:CDS | 45.0% | |
| TCCGTATATCAACCTCTTCG+AGG | + | tig0004309:19105-19124 | None:intergenic | 45.0% | |
| GTGTTTCCTAGTACGCTTCT+AGG | + | tig0004309:19388-19407 | None:intergenic | 45.0% | |
| CTCGGTAACTTGAATCGAAG+AGG | + | tig0004309:20655-20674 | None:intergenic | 45.0% | |
| ! | CTCTTCGATTCAAGTTACCG+AGG | - | tig0004309:20653-20672 | Msa1340670:intron | 45.0% |
| ! | TTCGATTCAAGTTACCGAGG+TGG | - | tig0004309:20656-20675 | Msa1340670:intron | 45.0% |
| CGATGAATATTCCTCCACCT+CGG | + | tig0004309:20673-20692 | None:intergenic | 45.0% | |
| CTTGGACAACACTCAACAGT+CGG | - | tig0004309:20797-20816 | Msa1340670:intron | 45.0% | |
| ! | GCAATTTTCTCAGCAGCCAT+AGG | - | tig0004309:20896-20915 | Msa1340670:CDS | 45.0% |
| GGACAAGCTAACATGATCAC+AGG | - | tig0004309:20932-20951 | Msa1340670:CDS | 45.0% | |
| !! | GCAACAGGTTTTGGTGGAAT+TGG | - | tig0004309:20974-20993 | Msa1340670:CDS | 45.0% |
| AACCGTTGGGAAGTTGAATG+TGG | - | tig0004309:21297-21316 | Msa1340670:intron | 45.0% | |
| GTTGGGAAGTTGAATGTGGA+TGG | - | tig0004309:21301-21320 | Msa1340670:intron | 45.0% | |
| !! | TGGTAATGGCACAAAATGGG+TGG | - | tig0004309:21321-21340 | Msa1340670:CDS | 45.0% |
| ! | GGTAATGGCACAAAATGGGT+GGG | - | tig0004309:21322-21341 | Msa1340670:CDS | 45.0% |
| AAGGAAACAACCCCATGAAC+TGG | + | tig0004309:21487-21506 | None:intergenic | 45.0% | |
| !! | AATTTAAATAAAACATTATT+TGG | + | tig0004309:19180-19199 | None:intergenic | 5.0% |
| GTGTGAAGATGGCTGAGACA+TGG | + | tig0004309:18187-18206 | None:intergenic | 50.0% | |
| GTATGGTGCAGATCCAACAG+GGG | - | tig0004309:18514-18533 | Msa1340670:CDS | 50.0% | |
| CCTCCAAGGTCTCTAATTCC+TGG | + | tig0004309:18617-18636 | None:intergenic | 50.0% | |
| CCAGGAATTAGAGACCTTGG+AGG | - | tig0004309:18614-18633 | Msa1340670:CDS | 50.0% | |
| ACAAGATTGCCAGCCGATGA+AGG | + | tig0004309:18695-18714 | None:intergenic | 50.0% | |
| ! | TTCATCGGCTGGCAATCTTG+TGG | - | tig0004309:18694-18713 | Msa1340670:CDS | 50.0% |
| AGCTGGAAAACACCTCGAAG+AGG | - | tig0004309:19090-19109 | Msa1340670:intron | 50.0% | |
| CCTAGTACGCTTCTAGGTAC+AGG | + | tig0004309:19382-19401 | None:intergenic | 50.0% | |
| ! | CCTGTACCTAGAAGCGTACT+AGG | - | tig0004309:19379-19398 | Msa1340670:intron | 50.0% |
| ! | GATTCAAGTTACCGAGGTGG+AGG | - | tig0004309:20659-20678 | Msa1340670:intron | 50.0% |
| TTCCTCCATTTCACCACCGA+AGG | - | tig0004309:20728-20747 | Msa1340670:intron | 50.0% | |
| TTCCTTCGGTGGTGAAATGG+AGG | + | tig0004309:20733-20752 | None:intergenic | 50.0% | |
| GCTTCTAGGTACAGGCTCAC+TGG | + | tig0004309:19374-19393 | None:intergenic | 55.0% | |
| GGACAACACTCAACAGTCGG+CGG | - | tig0004309:20800-20819 | Msa1340670:intron | 55.0% | |
| TCAACAGTCGGCGGAGACAA+AGG | - | tig0004309:20809-20828 | Msa1340670:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004309 | gene | 18010 | 21522 | 18010 | ID=Msa1340670;Name=Msa1340670 |
| tig0004309 | mRNA | 18010 | 21522 | 18010 | ID=Msa1340670-mRNA-1;Parent=Msa1340670;Name=Msa1340670-mRNA-1;_AED=0.34;_eAED=0.34;_QI=32|1|0.66|1|0.5|0.33|3|0|481 |
| tig0004309 | exon | 18010 | 19050 | 18010 | ID=Msa1340670-mRNA-1:exon:2813;Parent=Msa1340670-mRNA-1 |
| tig0004309 | exon | 20817 | 21047 | 20817 | ID=Msa1340670-mRNA-1:exon:2812;Parent=Msa1340670-mRNA-1 |
| tig0004309 | exon | 21317 | 21522 | 21317 | ID=Msa1340670-mRNA-1:exon:2811;Parent=Msa1340670-mRNA-1 |
| tig0004309 | five_prime_UTR | 21491 | 21522 | 21491 | ID=Msa1340670-mRNA-1:five_prime_utr;Parent=Msa1340670-mRNA-1 |
| tig0004309 | CDS | 21317 | 21490 | 21317 | ID=Msa1340670-mRNA-1:cds;Parent=Msa1340670-mRNA-1 |
| tig0004309 | CDS | 20817 | 21047 | 20817 | ID=Msa1340670-mRNA-1:cds;Parent=Msa1340670-mRNA-1 |
| tig0004309 | CDS | 18010 | 19050 | 18010 | ID=Msa1340670-mRNA-1:cds;Parent=Msa1340670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
