Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132990 | XP_003611167.1 | 85.598 | 493 | 24 | 6 | 1 | 468 | 1 | 471 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132990 | sp|P54873|HMCS_ARATH | 67.347 | 490 | 104 | 8 | 5 | 468 | 2 | 461 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132990 | G7KER8 | 85.598 | 493 | 24 | 6 | 1 | 468 | 1 | 471 | 0.0 | 834 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013970 | Msa1132990 | 0.815520 | 8.863245e-52 | -8.615850e-47 |
| Msa0022260 | Msa1132990 | 0.803306 | 3.711871e-49 | -8.615850e-47 |
| Msa0045810 | Msa1132990 | 0.803954 | 2.724166e-49 | -8.615850e-47 |
| Msa0118270 | Msa1132990 | 0.803718 | 3.049724e-49 | -8.615850e-47 |
| Msa0753920 | Msa1132990 | 0.930110 | 2.636456e-93 | -8.615850e-47 |
| Msa0807010 | Msa1132990 | 0.906245 | 1.823531e-80 | -8.615850e-47 |
| Msa0813160 | Msa1132990 | 0.814512 | 1.483907e-51 | -8.615850e-47 |
| Msa0832940 | Msa1132990 | 0.917790 | 3.453629e-86 | -8.615850e-47 |
| Msa0139500 | Msa1132990 | 0.819085 | 1.397521e-52 | -8.615850e-47 |
| Msa0143590 | Msa1132990 | 0.813600 | 2.357541e-51 | -8.615850e-47 |
| Msa0161400 | Msa1132990 | 0.805163 | 1.524406e-49 | -8.615850e-47 |
| Msa0189650 | Msa1132990 | 0.817277 | 3.584586e-52 | -8.615850e-47 |
| Msa0189720 | Msa1132990 | 0.816063 | 6.706192e-52 | -8.615850e-47 |
| Msa0212300 | Msa1132990 | 0.803081 | 4.131935e-49 | -8.615850e-47 |
| Msa0218040 | Msa1132990 | 0.803903 | 2.790902e-49 | -8.615850e-47 |
| Msa0232100 | Msa1132990 | 0.812922 | 3.322826e-51 | -8.615850e-47 |
| Msa0387930 | Msa1132990 | 0.821270 | 4.413343e-53 | -8.615850e-47 |
| Msa0437480 | Msa1132990 | 0.811608 | 6.431149e-51 | -8.615850e-47 |
| Msa0440350 | Msa1132990 | 0.824002 | 1.022133e-53 | -8.615850e-47 |
| Msa1013190 | Msa1132990 | 0.809379 | 1.948454e-50 | -8.615850e-47 |
| Msa1029850 | Msa1132990 | 0.808737 | 2.673788e-50 | -8.615850e-47 |
| Msa1045230 | Msa1132990 | 0.827006 | 1.985236e-54 | -8.615850e-47 |
| Msa1045280 | Msa1132990 | 0.830548 | 2.760866e-55 | -8.615850e-47 |
| Msa1088320 | Msa1132990 | 0.820209 | 7.741104e-53 | -8.615850e-47 |
| Msa0251210 | Msa1132990 | 0.824597 | 7.405283e-54 | -8.615850e-47 |
| Msa0310130 | Msa1132990 | 0.807270 | 5.485317e-50 | -8.615850e-47 |
| Msa0326710 | Msa1132990 | 0.815994 | 6.949332e-52 | -8.615850e-47 |
| Msa0354840 | Msa1132990 | 0.810943 | 8.965328e-51 | -8.615850e-47 |
| Msa1132990 | Msa1192180 | 0.808289 | 3.331781e-50 | -8.615850e-47 |
| Msa1132990 | Msa1216980 | 0.829096 | 6.231657e-55 | -8.615850e-47 |
| Msa1132990 | Msa1253520 | 0.821007 | 5.074943e-53 | -8.615850e-47 |
| Msa1132990 | Msa1262670 | 0.809162 | 2.168581e-50 | -8.615850e-47 |
| Msa1132990 | Msa1365820 | 0.828646 | 8.008666e-55 | -8.615850e-47 |
| Msa1132990 | Msa1382710 | 0.806022 | 1.006630e-49 | -8.615850e-47 |
| Msa0519810 | Msa1132990 | 0.803523 | 3.346652e-49 | -8.615850e-47 |
| Msa0574900 | Msa1132990 | 0.807597 | 4.677814e-50 | -8.615850e-47 |
| Msa0586450 | Msa1132990 | 0.825888 | 3.667141e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132990 | MtrunA17_Chr5g0398151 | 85.598 | 493 | 24 | 6 | 1 | 468 | 1 | 471 | 0.0 | 834 |
| Msa1132990 | MtrunA17_Chr6g0474311 | 68.376 | 468 | 102 | 5 | 7 | 450 | 8 | 453 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132990 | AT4G11820.2 | 67.347 | 490 | 104 | 8 | 5 | 468 | 2 | 461 | 0.0 | 657 |
| Msa1132990 | AT4G11820.3 | 70.302 | 431 | 101 | 6 | 40 | 468 | 1 | 406 | 0.0 | 620 |
| Msa1132990 | AT4G11820.1 | 70.302 | 431 | 101 | 6 | 40 | 468 | 1 | 406 | 0.0 | 620 |
Find 121 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGCTTTCAAAAGAAAT+AGG | 0.210965 | 7_3:+85906454 | None:intergenic |
| TCTATGCAACGAACAATAAA+TGG | 0.242624 | 7_3:-85903979 | Msa1132990:three_prime_UTR |
| GTCTGGAACAAACAGAAATA+TGG | 0.263458 | 7_3:-85906828 | Msa1132990:intron |
| GCAATGTTTGACAAACTAAA+TGG | 0.286875 | 7_3:+85904665 | None:intergenic |
| ATGATTGTAATTTAGTATTT+CGG | 0.290226 | 7_3:-85905386 | Msa1132990:intron |
| CTTTGTTCAATTGTGTCAAT+TGG | 0.290856 | 7_3:-85906749 | Msa1132990:CDS |
| ATTTGCTTTCAAAAGAAATA+GGG | 0.301513 | 7_3:+85906455 | None:intergenic |
| GCTGCTATTGCTATGCTAAT+TGG | 0.307008 | 7_3:-85906487 | Msa1132990:CDS |
| GTCTGAACTACCTTGTTATA+AGG | 0.329972 | 7_3:+85905506 | None:intergenic |
| TGATTATGATTGTAGCTCTA+AGG | 0.346847 | 7_3:-85905200 | Msa1132990:CDS |
| TGCTTTGGTATCAAAGTAGA+TGG | 0.354413 | 7_3:+85904938 | None:intergenic |
| TCATCGGATAAAGTTGTAAA+AGG | 0.369541 | 7_3:+85905151 | None:intergenic |
| AAGCAAGGACAGCAGCCTTT+TGG | 0.374475 | 7_3:-85904130 | Msa1132990:CDS |
| CTTGCTTGTTACATAATCCT+TGG | 0.405156 | 7_3:+85904146 | None:intergenic |
| CCCTCCTAACTGCGTTCAAC+AGG | 0.405990 | 7_3:-85908487 | Msa1132990:intron |
| CTGCATCAAGAATGACTTGA+TGG | 0.406438 | 7_3:+85907281 | None:intergenic |
| GTCACAGGTGCTAGGAAATC+TGG | 0.409006 | 7_3:-85903219 | Msa1132990:three_prime_UTR |
| ATAGAGGCTTTGCAACTTGT+TGG | 0.416177 | 7_3:+85904978 | None:intergenic |
| TCCAGACGACCAATCTGTTT+AGG | 0.418016 | 7_3:+85907339 | None:intergenic |
| TCCTAAACAGATTGGTCGTC+TGG | 0.418362 | 7_3:-85907340 | Msa1132990:CDS |
| TAGAGGCTTTGCAACTTGTT+GGG | 0.419718 | 7_3:+85904979 | None:intergenic |
| CATTGAAACACTGAAGCTAA+TGG | 0.420891 | 7_3:-85904184 | Msa1132990:CDS |
| GGATGCAAATGCTGCATAGA+TGG | 0.426955 | 7_3:+85904892 | None:intergenic |
| GTTACCTGTTGAACGCAGTT+AGG | 0.430235 | 7_3:+85908483 | None:intergenic |
| ATTCTTGATGCAGATCTTTG+AGG | 0.432466 | 7_3:-85907271 | Msa1132990:intron |
| ATTCCAACGTTCTTTGCTGC+TGG | 0.435491 | 7_3:+85908531 | None:intergenic |
| TACATGTTACCAACTTGCTT+TGG | 0.440980 | 7_3:+85904923 | None:intergenic |
| GTGAAGGGTAGTCTTTGTAT+TGG | 0.443511 | 7_3:-85903938 | Msa1132990:three_prime_UTR |
| CTTTCTCTTGTTCAAAGGAA+AGG | 0.445132 | 7_3:+85908569 | None:intergenic |
| TCAAAAGAAATAGGGGCATC+AGG | 0.453354 | 7_3:+85906463 | None:intergenic |
| CAAATTGAGGGGAAGTCATA+TGG | 0.453589 | 7_3:-85906437 | Msa1132990:CDS |
| CAAGAGAAAGAATCAAGAAA+TGG | 0.453610 | 7_3:-85908556 | Msa1132990:exon |
| TCATAATAGTTGTGAAGCTC+TGG | 0.460821 | 7_3:-85903735 | Msa1132990:three_prime_UTR |
| GCTCCTCCGGTAGGTCGAGC+AGG | 0.463854 | 7_3:+85906511 | None:intergenic |
| AATTCATGGGATGGACGTTA+TGG | 0.464557 | 7_3:-85906717 | Msa1132990:CDS |
| AGCAATAGCAGCAGCTCCTC+CGG | 0.467184 | 7_3:+85906498 | None:intergenic |
| TTTGATGCAGGAAGCATTGG+AGG | 0.489358 | 7_3:-85908099 | Msa1132990:intron |
| TTTGTTCAATTGTGTCAATT+GGG | 0.489475 | 7_3:-85906748 | Msa1132990:CDS |
| TGTACCTTCTCATCGTATAG+AGG | 0.489750 | 7_3:+85904962 | None:intergenic |
| ATTGGGTGGAGAGCAATTCA+TGG | 0.491422 | 7_3:-85906731 | Msa1132990:CDS |
| CTTTCTCAGGTCTATGCTGA+AGG | 0.492679 | 7_3:-85906535 | Msa1132990:intron |
| ATGACGAGAGCTACCAAAGC+CGG | 0.493439 | 7_3:-85905132 | Msa1132990:CDS |
| TATGGAAATACTGATATTGA+AGG | 0.498987 | 7_3:-85906810 | Msa1132990:CDS |
| GAAGGTCCTGCTCGACCTAC+CGG | 0.502083 | 7_3:-85906517 | Msa1132990:CDS |
| TGGTCTTCAGCGACTTCTTG+AGG | 0.503836 | 7_3:-85905303 | Msa1132990:CDS |
| TTTCAGCAACATCCATCACT+TGG | 0.507070 | 7_3:+85904642 | None:intergenic |
| AGGAAAACATTGTGGCAGTT+AGG | 0.515627 | 7_3:+85904711 | None:intergenic |
| TGATTCTTTCTCTTGTTCAA+AGG | 0.516266 | 7_3:+85908564 | None:intergenic |
| TCGGTGAGAAAGAATGTGCC+TGG | 0.516526 | 7_3:+85904105 | None:intergenic |
| TTTGCTTTCAAAAGAAATAG+GGG | 0.519392 | 7_3:+85906456 | None:intergenic |
| GCGACTTCTTGAGGAATCCC+AGG | 0.520791 | 7_3:-85905294 | Msa1132990:intron |
| AGTGTTTCAATGAACTTCTG+TGG | 0.521063 | 7_3:+85904195 | None:intergenic |
| CCAAAGCCGGGATCTTGAAA+AGG | 0.524815 | 7_3:-85905119 | Msa1132990:intron |
| ACCTGTTGAACGCAGTTAGG+AGG | 0.526299 | 7_3:+85908486 | None:intergenic |
| GGGTATTCACTAGCAAGGTC+AGG | 0.527013 | 7_3:+85906391 | None:intergenic |
| AAAAGTAAAGTGTCCTACCT+TGG | 0.527107 | 7_3:-85903189 | Msa1132990:three_prime_UTR |
| TAGTTAAATGCGCAGAAGGG+TGG | 0.527513 | 7_3:+85903164 | None:intergenic |
| TTTAGTTTCACGTAATTGCA+AGG | 0.530355 | 7_3:+85904691 | None:intergenic |
| TCAACTAATGCTTGCTATGG+AGG | 0.531555 | 7_3:-85906780 | Msa1132990:CDS |
| AAGATAGTTAAATGCGCAGA+AGG | 0.534540 | 7_3:+85903160 | None:intergenic |
| GATTCAACTAATGCTTGCTA+TGG | 0.539495 | 7_3:-85906783 | Msa1132990:CDS |
| ATATTATTCTCATACGGAAG+TGG | 0.541033 | 7_3:-85904734 | Msa1132990:CDS |
| TGCGCAGAAGGGTGGGTCCA+AGG | 0.543375 | 7_3:+85903172 | None:intergenic |
| GAGATCGATCCTAAACAGAT+TGG | 0.548622 | 7_3:-85907348 | Msa1132990:CDS |
| TGACGAGAGCTACCAAAGCC+GGG | 0.549767 | 7_3:-85905131 | Msa1132990:CDS |
| GAGGTTACCAAAGAAAAGCT+TGG | 0.555142 | 7_3:-85905175 | Msa1132990:CDS |
| CAGAAGGGTGGGTCCAAGGT+AGG | 0.556620 | 7_3:+85903176 | None:intergenic |
| TGATTGTAGCTCTAAGGATG+AGG | 0.558354 | 7_3:-85905194 | Msa1132990:CDS |
| GGTCACAGGCTCACAGTCAC+AGG | 0.563060 | 7_3:-85903234 | Msa1132990:three_prime_UTR |
| GTCAAACATTGCCCAAGTGA+TGG | 0.563325 | 7_3:-85904654 | Msa1132990:CDS |
| AGTTAAATGCGCAGAAGGGT+GGG | 0.563838 | 7_3:+85903165 | None:intergenic |
| ACAGACAAACCGTTGACTGC+AGG | 0.565692 | 7_3:+85904024 | None:intergenic |
| AACAGGCCCTATATCTCCAT+TGG | 0.566245 | 7_3:-85903273 | Msa1132990:intron |
| ACTATCACTATCTATGCCAA+TGG | 0.567138 | 7_3:+85903257 | None:intergenic |
| CACTGAAGCTAATGGAACAT+AGG | 0.569121 | 7_3:-85904176 | Msa1132990:CDS |
| TGCATAGAATCTACGATACA+TGG | 0.569318 | 7_3:+85904074 | None:intergenic |
| GTCAACGGTTTGTCTGTCAA+TGG | 0.569594 | 7_3:-85904018 | Msa1132990:CDS |
| TGAATAAGAAAGAGTTGCCA+AGG | 0.573450 | 7_3:+85908631 | None:intergenic |
| TTCAGCAACATCCATCACTT+GGG | 0.574544 | 7_3:+85904643 | None:intergenic |
| TAACAAACAAACAAACACCT+TGG | 0.580987 | 7_3:-85908648 | Msa1132990:five_prime_UTR |
| AGGGTGATATTATTCTCATA+CGG | 0.581841 | 7_3:-85904740 | Msa1132990:CDS |
| GGAACATAGGTATGGTGCCA+AGG | 0.583616 | 7_3:-85904163 | Msa1132990:CDS |
| AAGCTAATGGAACATAGGTA+TGG | 0.584877 | 7_3:-85904171 | Msa1132990:CDS |
| TTCACAAACATGTTACCTCA+TGG | 0.585332 | 7_3:-85906099 | Msa1132990:CDS |
| TAAGCTCCACATTGAGTGAA+GGG | 0.586328 | 7_3:-85903953 | Msa1132990:three_prime_UTR |
| CCTGTTGAACGCAGTTAGGA+GGG | 0.587798 | 7_3:+85908487 | None:intergenic |
| TTTGTGCTGTAGGTTGTCGA+CGG | 0.588804 | 7_3:-85906128 | Msa1132990:intron |
| CTACCTTGTTATAAGGAGAG+TGG | 0.592935 | 7_3:+85905513 | None:intergenic |
| GCTTTGGTAGCTCTCGTCAT+CGG | 0.595190 | 7_3:+85905135 | None:intergenic |
| AGAATGTGCCTGGAGCCAAA+AGG | 0.595474 | 7_3:+85904115 | None:intergenic |
| ATTGGCATAGATAGTGATAG+TGG | 0.595667 | 7_3:-85903255 | Msa1132990:three_prime_UTR |
| AATTTGACTCCTGCAGTCAA+CGG | 0.595715 | 7_3:-85904033 | Msa1132990:CDS |
| GTGGAGAGCAATTCATGGGA+TGG | 0.595820 | 7_3:-85906726 | Msa1132990:CDS |
| TAGATAGTGATAGTGGTCAC+AGG | 0.596566 | 7_3:-85903248 | Msa1132990:three_prime_UTR |
| CAGATTGGTCGTCTGGAAGT+CGG | 0.598190 | 7_3:-85907333 | Msa1132990:CDS |
| TTAAGCTCCACATTGAGTGA+AGG | 0.599286 | 7_3:-85903954 | Msa1132990:three_prime_UTR |
| TTGGGTGGAGAGCAATTCAT+GGG | 0.604306 | 7_3:-85906730 | Msa1132990:CDS |
| ACTTTGATACCAAAGCAAGT+TGG | 0.615714 | 7_3:-85904932 | Msa1132990:CDS |
| ACGATACATGGTATCGACTT+CGG | 0.616243 | 7_3:+85904086 | None:intergenic |
| GTTCAATTGTGTCAATTGGG+TGG | 0.616456 | 7_3:-85906745 | Msa1132990:CDS |
| GTTTCAATGAACTTCTGTGG+AGG | 0.619312 | 7_3:+85904198 | None:intergenic |
| GAAGCATTGGAGGCTCATGA+TGG | 0.621839 | 7_3:-85908089 | Msa1132990:CDS |
| ATTCCACTCTCCTTATAACA+AGG | 0.625771 | 7_3:-85905516 | Msa1132990:intron |
| TGCAGATATGAGAAACACGA+GGG | 0.625881 | 7_3:-85905575 | Msa1132990:intron |
| AAAGCCTCTATACGATGAGA+AGG | 0.630768 | 7_3:-85904966 | Msa1132990:CDS |
| GGCTCACAGTCACAGGTGCT+AGG | 0.631640 | 7_3:-85903227 | Msa1132990:three_prime_UTR |
| GGTCCTGCTCGACCTACCGG+AGG | 0.636919 | 7_3:-85906514 | Msa1132990:CDS |
| TGACCTTGCTAGTGAATACC+CGG | 0.639253 | 7_3:-85906389 | Msa1132990:intron |
| TTGCATCTGCAGTTTGACAG+TGG | 0.639309 | 7_3:-85907394 | Msa1132990:intron |
| TTACCGGGTATTCACTAGCA+AGG | 0.643611 | 7_3:+85906386 | None:intergenic |
| AGATAGTTAAATGCGCAGAA+GGG | 0.644229 | 7_3:+85903161 | None:intergenic |
| GCACCAGCAGCAAAGAACGT+TGG | 0.645271 | 7_3:-85908534 | Msa1132990:CDS |
| AGACTACCCTTCACTCAATG+TGG | 0.649805 | 7_3:+85903947 | None:intergenic |
| CAAGGATTATGTAACAAGCA+AGG | 0.651946 | 7_3:-85904145 | Msa1132990:CDS |
| ATAGCAGCAGCTCCTCCGGT+AGG | 0.656075 | 7_3:+85906502 | None:intergenic |
| AAAGTTGAAGTCAAGACATG+AGG | 0.659927 | 7_3:-85904621 | Msa1132990:intron |
| TTGCAGATATGAGAAACACG+AGG | 0.684755 | 7_3:-85905576 | Msa1132990:intron |
| TAATTGCAAGGAAAACATTG+TGG | 0.695304 | 7_3:+85904703 | None:intergenic |
| ATTGACACAATTGAACAAAG+CGG | 0.706527 | 7_3:+85906752 | None:intergenic |
| AAATGCTGCATAGATGGACG+CGG | 0.723317 | 7_3:+85904898 | None:intergenic |
| AGCAAGTATCAAGAGCCATG+AGG | 0.727431 | 7_3:+85906084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTAAGTCT+TGG | - | chr7_3:85904237-85904256 | Msa1132990:intron | 10.0% |
| !!! | TATTTATTTATTTTTTTGTC+TGG | - | chr7_3:85904952-85904971 | Msa1132990:CDS | 10.0% |
| !! | ATGAAAAATATTAATTAACT+AGG | - | chr7_3:85905800-85905819 | Msa1132990:intron | 10.0% |
| !! | TGAAAAATATTAATTAACTA+GGG | - | chr7_3:85905801-85905820 | Msa1132990:intron | 10.0% |
| !!! | AGTCAAAAATTTATATTTTT+AGG | - | chr7_3:85907994-85908013 | Msa1132990:intron | 10.0% |
| !!! | GTTTTTTCACTTTTTAATTA+AGG | - | chr7_3:85903662-85903681 | Msa1132990:intron | 15.0% |
| !! | TTAAAAAAAAAAAAAATCCC+AGG | + | chr7_3:85904233-85904252 | None:intergenic | 15.0% |
| !! | GAAAAATATTAATTAACTAG+GGG | - | chr7_3:85905802-85905821 | Msa1132990:intron | 15.0% |
| !! | CAAAAACATAATTAGATATT+TGG | + | chr7_3:85906204-85906223 | None:intergenic | 15.0% |
| !! | ATGATTGTAATTTAGTATTT+CGG | - | chr7_3:85906411-85906430 | Msa1132990:CDS | 15.0% |
| !!! | TACAATGTTATTTATTTTGA+AGG | - | chr7_3:85906792-85906811 | Msa1132990:CDS | 15.0% |
| !! | GTAAATATTTATTAGAAAAC+AGG | + | chr7_3:85907012-85907031 | None:intergenic | 15.0% |
| !! | ATTGAATGATTAGGAAATAA+CGG | + | chr7_3:85903433-85903452 | None:intergenic | 20.0% |
| !! | GTAGAATTAATTGAATGATT+AGG | + | chr7_3:85903442-85903461 | None:intergenic | 20.0% |
| !! | AATCATTCAATTAATTCTAC+TGG | - | chr7_3:85903442-85903461 | Msa1132990:intron | 20.0% |
| !! | AAAAGTGAAAAAACAAAAAG+AGG | + | chr7_3:85903656-85903675 | None:intergenic | 20.0% |
| !!! | TTTAATTTTGTTTTTGATGC+AGG | - | chr7_3:85903686-85903705 | Msa1132990:intron | 20.0% |
| !! | AATCATCAAGAAATAAGATT+AGG | + | chr7_3:85904379-85904398 | None:intergenic | 20.0% |
| !! | AGTTTAAATACTCAAAACTA+AGG | + | chr7_3:85904655-85904674 | None:intergenic | 20.0% |
| !!! | TAGTTTTGAGTATTTAAACT+TGG | - | chr7_3:85904655-85904674 | Msa1132990:CDS | 20.0% |
| !! | AGGTTTATTATTACTGAATA+TGG | + | chr7_3:85905166-85905185 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGTTCAGAATCA+AGG | + | chr7_3:85905186-85905205 | None:intergenic | 20.0% |
| !! | ATTTGCTTTCAAAAGAAATA+GGG | + | chr7_3:85905345-85905364 | None:intergenic | 20.0% |
| !!! | AATTTGCTTTCAAAAGAAAT+AGG | + | chr7_3:85905346-85905365 | None:intergenic | 20.0% |
| !! | ACAATAAAAAATTTCACCAA+GGG | + | chr7_3:85905919-85905938 | None:intergenic | 20.0% |
| !! | TACAATAAAAAATTTCACCA+AGG | + | chr7_3:85905920-85905939 | None:intergenic | 20.0% |
| !! | AAATATATAGAGCATATACA+GGG | + | chr7_3:85906365-85906384 | None:intergenic | 20.0% |
| !! | AAAATATATAGAGCATATAC+AGG | + | chr7_3:85906366-85906385 | None:intergenic | 20.0% |
| !!! | AAAATTAAAAAGTTTTCCAG+AGG | + | chr7_3:85906547-85906566 | None:intergenic | 20.0% |
| !!! | TTTTTATTCAGTTAATGCAT+AGG | - | chr7_3:85906563-85906582 | Msa1132990:intron | 20.0% |
| !!! | ATGTTAGTTTATTAAAATGC+TGG | - | chr7_3:85907489-85907508 | Msa1132990:intron | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | - | chr7_3:85908194-85908213 | Msa1132990:intron | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | - | chr7_3:85908284-85908303 | Msa1132990:intron | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | - | chr7_3:85908285-85908304 | Msa1132990:intron | 20.0% |
| ! | ATCTAGAAATGATGAAAAGA+AGG | + | chr7_3:85903352-85903371 | None:intergenic | 25.0% |
| ! | TAATGTCAGTCATATTAATG+TGG | - | chr7_3:85903539-85903558 | Msa1132990:intron | 25.0% |
| ! | AGTAAAGGGAAATATACAAT+TGG | - | chr7_3:85903735-85903754 | Msa1132990:three_prime_UTR | 25.0% |
| !!! | GGTTTCTTTCTTGTTTTTTT+TGG | - | chr7_3:85903814-85903833 | Msa1132990:three_prime_UTR | 25.0% |
| !!! | TTTTGGCTGTTTATTATGTT+TGG | - | chr7_3:85903831-85903850 | Msa1132990:three_prime_UTR | 25.0% |
| ! | AAAATTAAAACACCTTGACA+AGG | + | chr7_3:85904156-85904175 | None:intergenic | 25.0% |
| !!! | TGAAAAGTATTTTAACTCCT+GGG | - | chr7_3:85904213-85904232 | Msa1132990:intron | 25.0% |
| ! | ATGTGTGTTTAATGTTTGAT+AGG | - | chr7_3:85904308-85904327 | Msa1132990:intron | 25.0% |
| ! | TTCACTCTCTGATATATTAT+AGG | - | chr7_3:85904836-85904855 | Msa1132990:intron | 25.0% |
| ! | GTTAGTGTTAATAATCAGAT+TGG | - | chr7_3:85904864-85904883 | Msa1132990:intron | 25.0% |
| ! | TGTTAATAATCAGATTGGAT+TGG | - | chr7_3:85904869-85904888 | Msa1132990:CDS | 25.0% |
| ! | ATTGTATTAGAAAGCTATGT+AGG | + | chr7_3:85904933-85904952 | None:intergenic | 25.0% |
| ! | TATGGAAATACTGATATTGA+AGG | - | chr7_3:85904987-85905006 | Msa1132990:intron | 25.0% |
| ! | TTTGTTCAATTGTGTCAATT+GGG | - | chr7_3:85905049-85905068 | Msa1132990:intron | 25.0% |
| ! | TTTGCTTTCAAAAGAAATAG+GGG | + | chr7_3:85905344-85905363 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGAAAGCAAATTG+AGG | - | chr7_3:85905347-85905366 | Msa1132990:intron | 25.0% |
| !!! | TTCTTTTGAAAGCAAATTGA+GGG | - | chr7_3:85905348-85905367 | Msa1132990:intron | 25.0% |
| ! | AAATATTAATTAACTAGGGG+TGG | - | chr7_3:85905805-85905824 | Msa1132990:intron | 25.0% |
| ! | AGTCTTAGTTAGTACAAATT+TGG | + | chr7_3:85906145-85906164 | None:intergenic | 25.0% |
| ! | TGTCTGACTAAAAAATGATA+TGG | - | chr7_3:85906388-85906407 | Msa1132990:intron | 25.0% |
| !! | ATTTACGCCTTAAAATTTTC+AGG | - | chr7_3:85907026-85907045 | Msa1132990:intron | 25.0% |
| !! | TTACCTTCCTGAAAATTTTA+AGG | + | chr7_3:85907036-85907055 | None:intergenic | 25.0% |
| !!! | AAAAATTTTGAAGCCTCAAA+AGG | - | chr7_3:85907426-85907445 | Msa1132990:intron | 25.0% |
| !! | AAACAATCTAAATCCTTTTG+AGG | + | chr7_3:85907442-85907461 | None:intergenic | 25.0% |
| ! | CTAACATATTGACATACTAT+AGG | + | chr7_3:85907476-85907495 | None:intergenic | 25.0% |
| !! | CTTCAACGTAACATTTTAAA+GGG | + | chr7_3:85907976-85907995 | None:intergenic | 25.0% |
| !! | ACTTCAACGTAACATTTTAA+AGG | + | chr7_3:85907977-85907996 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr7_3:85908150-85908169 | Msa1132990:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr7_3:85908253-85908272 | Msa1132990:intron | 25.0% |
| ! | GGGCAATAAAGAAAAATAAT+AGG | - | chr7_3:85908305-85908324 | Msa1132990:intron | 25.0% |
| TAACAAACAAACAAACACCT+TGG | - | chr7_3:85903149-85903168 | Msa1132990:three_prime_UTR | 30.0% | |
| TGATTCTTTCTCTTGTTCAA+AGG | + | chr7_3:85903236-85903255 | None:intergenic | 30.0% | |
| CAAGAGAAAGAATCAAGAAA+TGG | - | chr7_3:85903241-85903260 | Msa1132990:three_prime_UTR | 30.0% | |
| AAATGATGAAAAGAAGGAAG+CGG | + | chr7_3:85903346-85903365 | None:intergenic | 30.0% | |
| !! | GATTTGATTTGTCATCATTC+AGG | - | chr7_3:85904072-85904091 | Msa1132990:CDS | 30.0% |
| TCATTCAGGAACATGTAAAT+TGG | - | chr7_3:85904086-85904105 | Msa1132990:CDS | 30.0% | |
| ! | GAACATGTAAATTGGTGATT+TGG | - | chr7_3:85904094-85904113 | Msa1132990:CDS | 30.0% |
| TTGGTAAATACAACTCATGA+TGG | - | chr7_3:85904113-85904132 | Msa1132990:CDS | 30.0% | |
| ! | AACCATTTAAAACCTTGTCA+AGG | - | chr7_3:85904141-85904160 | Msa1132990:CDS | 30.0% |
| !!! | GTGAAAAGTATTTTAACTCC+TGG | - | chr7_3:85904212-85904231 | Msa1132990:intron | 30.0% |
| ! | CTTTTCATTGTCTAACCATT+TGG | - | chr7_3:85904552-85904571 | Msa1132990:intron | 30.0% |
| CAATTTAGTACCTATTTGCA+TGG | - | chr7_3:85904621-85904640 | Msa1132990:intron | 30.0% | |
| CTCTGATATATTATAGGATG+TGG | - | chr7_3:85904842-85904861 | Msa1132990:intron | 30.0% | |
| ATTGACACAATTGAACAAAG+CGG | + | chr7_3:85905048-85905067 | None:intergenic | 30.0% | |
| CTTTGTTCAATTGTGTCAAT+TGG | - | chr7_3:85905048-85905067 | Msa1132990:intron | 30.0% | |
| TCTAGAGGCAACATATAATT+AGG | + | chr7_3:85905143-85905162 | None:intergenic | 30.0% | |
| TATTACTGAATATGGTCTAG+AGG | + | chr7_3:85905158-85905177 | None:intergenic | 30.0% | |
| GAACTAAAAAATTCATGTCC+TGG | - | chr7_3:85905193-85905212 | Msa1132990:CDS | 30.0% | |
| TTCTATGACTATCACAATGT+TGG | - | chr7_3:85905217-85905236 | Msa1132990:CDS | 30.0% | |
| TCTATGACTATCACAATGTT+GGG | - | chr7_3:85905218-85905237 | Msa1132990:CDS | 30.0% | |
| !! | TCTTTTGAAAGCAAATTGAG+GGG | - | chr7_3:85905349-85905368 | Msa1132990:intron | 30.0% |
| !! | AAATGGATTGAAAAGCTTAC+CGG | + | chr7_3:85905430-85905449 | None:intergenic | 30.0% |
| ACAAGTGACAACAATGAAAA+TGG | + | chr7_3:85905447-85905466 | None:intergenic | 30.0% | |
| ! | CTTGTCAGAACATTTTACTT+TGG | - | chr7_3:85905462-85905481 | Msa1132990:intron | 30.0% |
| AAAGCCAAATTAAAGTTGCA+AGG | + | chr7_3:85905546-85905565 | None:intergenic | 30.0% | |
| AACAACAATGTTATCCTTCA+TGG | + | chr7_3:85905575-85905594 | None:intergenic | 30.0% | |
| ATGACGTAGAAATAAAGAAC+AGG | + | chr7_3:85905602-85905621 | None:intergenic | 30.0% | |
| TTCCAATTCTTAAATGAGGT+CGG | - | chr7_3:85905957-85905976 | Msa1132990:intron | 30.0% | |
| TGGAGATTTCTTTGTACATT+AGG | - | chr7_3:85906015-85906034 | Msa1132990:intron | 30.0% | |
| CAAATTTGGAAAGAGGTTTA+AGG | + | chr7_3:85906131-85906150 | None:intergenic | 30.0% | |
| GTTAGTACAAATTTGGAAAG+AGG | + | chr7_3:85906138-85906157 | None:intergenic | 30.0% | |
| ! | TTAAAAAGTTTTCCAGAGGA+TGG | + | chr7_3:85906543-85906562 | None:intergenic | 30.0% |
| ! | TGATTATGATTGTAGCTCTA+AGG | - | chr7_3:85906597-85906616 | Msa1132990:intron | 30.0% |
| TCATCGGATAAAGTTGTAAA+AGG | + | chr7_3:85906649-85906668 | None:intergenic | 30.0% | |
| !!! | GCTATTTTTGTTGTGAAGAA+GGG | + | chr7_3:85906929-85906948 | None:intergenic | 30.0% |
| !!! | AGCTATTTTTGTTGTGAAGA+AGG | + | chr7_3:85906930-85906949 | None:intergenic | 30.0% |
| GCTATATATGTCATAGATAG+TGG | + | chr7_3:85906971-85906990 | None:intergenic | 30.0% | |
| TTATTAGAAAACAGGCAACA+TGG | + | chr7_3:85907004-85907023 | None:intergenic | 30.0% | |
| !! | AAAATTTTCAGGAAGGTAAG+AGG | - | chr7_3:85907037-85907056 | Msa1132990:intron | 30.0% |
| !! | AAATTTTCAGGAAGGTAAGA+GGG | - | chr7_3:85907038-85907057 | Msa1132990:intron | 30.0% |
| AGGGTGATATTATTCTCATA+CGG | - | chr7_3:85907057-85907076 | Msa1132990:intron | 30.0% | |
| ATATTATTCTCATACGGAAG+TGG | - | chr7_3:85907063-85907082 | Msa1132990:intron | 30.0% | |
| TAATTGCAAGGAAAACATTG+TGG | + | chr7_3:85907097-85907116 | None:intergenic | 30.0% | |
| ! | TTTAGTTTCACGTAATTGCA+AGG | + | chr7_3:85907109-85907128 | None:intergenic | 30.0% |
| GCAATGTTTGACAAACTAAA+TGG | + | chr7_3:85907135-85907154 | None:intergenic | 30.0% | |
| CATATCTGACTAGATGTTTA+TGG | + | chr7_3:85907209-85907228 | None:intergenic | 30.0% | |
| ! | TGAGGCTTCAAAATTTTTGT+AGG | + | chr7_3:85907424-85907443 | None:intergenic | 30.0% |
| TCTATGCAACGAACAATAAA+TGG | - | chr7_3:85907818-85907837 | Msa1132990:intron | 30.0% | |
| !!! | TCTTTGTATTGGTTTTGCAA+GGG | - | chr7_3:85907870-85907889 | Msa1132990:intron | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr7_3:85908460-85908479 | Msa1132990:intron | 30.0% |
| !!! | AGGACACTTTACTTTTTGAA+AGG | + | chr7_3:85908604-85908623 | None:intergenic | 30.0% |
| TGAATAAGAAAGAGTTGCCA+AGG | + | chr7_3:85903169-85903188 | None:intergenic | 35.0% | |
| CTTTCTCTTGTTCAAAGGAA+AGG | + | chr7_3:85903231-85903250 | None:intergenic | 35.0% | |
| !! | CGTGATTAGCTTAATGAAGA+TGG | + | chr7_3:85903387-85903406 | None:intergenic | 35.0% |
| GAATGATTAGGAAATAACGG+TGG | + | chr7_3:85903430-85903449 | None:intergenic | 35.0% | |
| GGGAAATATACAATTGGACT+TGG | - | chr7_3:85903741-85903760 | Msa1132990:three_prime_UTR | 35.0% | |
| TTGAAGATGTCATCTCAATG+AGG | - | chr7_3:85903793-85903812 | Msa1132990:three_prime_UTR | 35.0% | |
| ATTATTATTAGCGTCGTGTC+TGG | + | chr7_3:85903905-85903924 | None:intergenic | 35.0% | |
| TAAGCATGTGACATGAGATT+TGG | - | chr7_3:85904007-85904026 | Msa1132990:exon | 35.0% | |
| !!! | CACCTTGACAAGGTTTTAAA+TGG | + | chr7_3:85904146-85904165 | None:intergenic | 35.0% |
| ACATTAAACACACATACAGC+AGG | + | chr7_3:85904303-85904322 | None:intergenic | 35.0% | |
| ATTCTTGATGCAGATCTTTG+AGG | - | chr7_3:85904526-85904545 | Msa1132990:intron | 35.0% | |
| GGTTTAATCACCATGCAAAT+AGG | + | chr7_3:85904634-85904653 | None:intergenic | 35.0% | |
| CTTTACATGAAAACAGTCAC+TGG | + | chr7_3:85904802-85904821 | None:intergenic | 35.0% | |
| ! | GTCTGGAACAAACAGAAATA+TGG | - | chr7_3:85904969-85904988 | Msa1132990:CDS | 35.0% |
| ! | GATTCAACTAATGCTTGCTA+TGG | - | chr7_3:85905014-85905033 | Msa1132990:intron | 35.0% |
| TTGTGATAGTCATAGAATCC+AGG | + | chr7_3:85905214-85905233 | None:intergenic | 35.0% | |
| CTATGACTATCACAATGTTG+GGG | - | chr7_3:85905219-85905238 | Msa1132990:CDS | 35.0% | |
| !! | AATGGATTGAAAAGCTTACC+GGG | + | chr7_3:85905429-85905448 | None:intergenic | 35.0% |
| CATCACAAGAGAAAAACGAT+TGG | + | chr7_3:85905513-85905532 | None:intergenic | 35.0% | |
| GCATCCTTGCAACTTTAATT+TGG | - | chr7_3:85905539-85905558 | Msa1132990:CDS | 35.0% | |
| TCATGTGAATTTAGTGCACT+TGG | + | chr7_3:85905647-85905666 | None:intergenic | 35.0% | |
| ! | TCACATGATTTTTGTGCTGT+AGG | - | chr7_3:85905659-85905678 | Msa1132990:intron | 35.0% |
| TTCACAAACATGTTACCTCA+TGG | - | chr7_3:85905698-85905717 | Msa1132990:intron | 35.0% | |
| CGAGTTCCAATTCTTAAATG+AGG | - | chr7_3:85905953-85905972 | Msa1132990:intron | 35.0% | |
| TTCCGACCTCATTTAAGAAT+TGG | + | chr7_3:85905962-85905981 | None:intergenic | 35.0% | |
| ! | ATTTTCACCAAAGGACACAT+TGG | + | chr7_3:85905996-85906015 | None:intergenic | 35.0% |
| AATGTGTCCTTTGGTGAAAA+TGG | - | chr7_3:85905995-85906014 | Msa1132990:intron | 35.0% | |
| ! | GAAATCTCCATTTTCACCAA+AGG | + | chr7_3:85906005-85906024 | None:intergenic | 35.0% |
| GACTTAGCTCAAATCAACAA+TGG | - | chr7_3:85906085-85906104 | Msa1132990:CDS | 35.0% | |
| ATTCCACTCTCCTTATAACA+AGG | - | chr7_3:85906281-85906300 | Msa1132990:intron | 35.0% | |
| ! | GTCTGAACTACCTTGTTATA+AGG | + | chr7_3:85906294-85906313 | None:intergenic | 35.0% |
| !! | ACAGGGAGCATTATTATCAT+TGG | + | chr7_3:85906348-85906367 | None:intergenic | 35.0% |
| ! | GCAAAAAAGTTTTGCTCGTT+TGG | - | chr7_3:85906474-85906493 | Msa1132990:CDS | 35.0% |
| TGGATAAATGATGAGAACCT+GGG | + | chr7_3:85906523-85906542 | None:intergenic | 35.0% | |
| ATGGATAAATGATGAGAACC+TGG | + | chr7_3:85906524-85906543 | None:intergenic | 35.0% | |
| ! | AAAAGGTCCAAGCTTTTCTT+TGG | + | chr7_3:85906632-85906651 | None:intergenic | 35.0% |
| TGCTTTGGTATCAAAGTAGA+TGG | + | chr7_3:85906862-85906881 | None:intergenic | 35.0% | |
| ACTTTGATACCAAAGCAAGT+TGG | - | chr7_3:85906865-85906884 | Msa1132990:intron | 35.0% | |
| ! | TACATGTTACCAACTTGCTT+TGG | + | chr7_3:85906877-85906896 | None:intergenic | 35.0% |
| TCACAACAAAAATAGCTCAC+TGG | - | chr7_3:85906933-85906952 | Msa1132990:intron | 35.0% | |
| !! | ACGCCTTAAAATTTTCAGGA+AGG | - | chr7_3:85907030-85907049 | Msa1132990:intron | 35.0% |
| AAAGTTGAAGTCAAGACATG+AGG | - | chr7_3:85907176-85907195 | Msa1132990:intron | 35.0% | |
| AAACGAACAGAGATACAGAT+TGG | - | chr7_3:85907360-85907379 | Msa1132990:CDS | 35.0% | |
| ! | TTTGTAGGAGCACAACTAAA+AGG | + | chr7_3:85907409-85907428 | None:intergenic | 35.0% |
| AGTGTTTCAATGAACTTCTG+TGG | + | chr7_3:85907605-85907624 | None:intergenic | 35.0% | |
| CATTGAAACACTGAAGCTAA+TGG | - | chr7_3:85907613-85907632 | Msa1132990:intron | 35.0% | |
| AAGCTAATGGAACATAGGTA+TGG | - | chr7_3:85907626-85907645 | Msa1132990:intron | 35.0% | |
| ! | CTTGCTTGTTACATAATCCT+TGG | + | chr7_3:85907654-85907673 | None:intergenic | 35.0% |
| CAAGGATTATGTAACAAGCA+AGG | - | chr7_3:85907652-85907671 | Msa1132990:intron | 35.0% | |
| TGCATAGAATCTACGATACA+TGG | + | chr7_3:85907726-85907745 | None:intergenic | 35.0% | |
| !!! | GTCTTTGTATTGGTTTTGCA+AGG | - | chr7_3:85907869-85907888 | Msa1132990:intron | 35.0% |
| TCATAATAGTTGTGAAGCTC+TGG | - | chr7_3:85908062-85908081 | Msa1132990:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr7_3:85908367-85908386 | Msa1132990:intron | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | + | chr7_3:85908446-85908465 | None:intergenic | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | chr7_3:85908444-85908463 | Msa1132990:intron | 35.0% |
| TCTATGCCAATGGAGATATA+GGG | + | chr7_3:85908533-85908552 | None:intergenic | 35.0% | |
| ATCTATGCCAATGGAGATAT+AGG | + | chr7_3:85908534-85908553 | None:intergenic | 35.0% | |
| ACTATCACTATCTATGCCAA+TGG | + | chr7_3:85908543-85908562 | None:intergenic | 35.0% | |
| ATTGGCATAGATAGTGATAG+TGG | - | chr7_3:85908542-85908561 | Msa1132990:exon | 35.0% | |
| ! | AAAAGTAAAGTGTCCTACCT+TGG | - | chr7_3:85908608-85908627 | Msa1132990:five_prime_UTR | 35.0% |
| AGATAGTTAAATGCGCAGAA+GGG | + | chr7_3:85908639-85908658 | None:intergenic | 35.0% | |
| AAGATAGTTAAATGCGCAGA+AGG | + | chr7_3:85908640-85908659 | None:intergenic | 35.0% | |
| !! | GTTTTTGATGCAGGAAGCAT+TGG | - | chr7_3:85903695-85903714 | Msa1132990:intron | 40.0% |
| GTGCTTCGTAGATGATAACT+CGG | + | chr7_3:85903871-85903890 | None:intergenic | 40.0% | |
| TCTCATGTCACATGCTTATC+CGG | + | chr7_3:85904005-85904024 | None:intergenic | 40.0% | |
| GAGATCGATCCTAAACAGAT+TGG | - | chr7_3:85904449-85904468 | Msa1132990:intron | 40.0% | |
| CTGCATCAAGAATGACTTGA+TGG | + | chr7_3:85904519-85904538 | None:intergenic | 40.0% | |
| GCGAGAATCACATATCCAAA+TGG | + | chr7_3:85904570-85904589 | None:intergenic | 40.0% | |
| TACTACTAAGGTTACGGCAT+CGG | + | chr7_3:85904775-85904794 | None:intergenic | 40.0% | |
| !! | TCAACTAATGCTTGCTATGG+AGG | - | chr7_3:85905017-85905036 | Msa1132990:intron | 40.0% |
| GTTCAATTGTGTCAATTGGG+TGG | - | chr7_3:85905052-85905071 | Msa1132990:intron | 40.0% | |
| AATTCATGGGATGGACGTTA+TGG | - | chr7_3:85905080-85905099 | Msa1132990:intron | 40.0% | |
| !! | CCTGAGAAAGTAAGCATTGA+TGG | + | chr7_3:85905252-85905271 | None:intergenic | 40.0% |
| CCATCAATGCTTACTTTCTC+AGG | - | chr7_3:85905249-85905268 | Msa1132990:intron | 40.0% | |
| GCTGCTATTGCTATGCTAAT+TGG | - | chr7_3:85905310-85905329 | Msa1132990:CDS | 40.0% | |
| !! | TCAAAAGAAATAGGGGCATC+AGG | + | chr7_3:85905337-85905356 | None:intergenic | 40.0% |
| CAAATTGAGGGGAAGTCATA+TGG | - | chr7_3:85905360-85905379 | Msa1132990:intron | 40.0% | |
| !! | TTGGCTTTGATATGCCATGA+AGG | - | chr7_3:85905558-85905577 | Msa1132990:CDS | 40.0% |
| TCATCCACATGTAGCATTTC+AGG | - | chr7_3:85905618-85905637 | Msa1132990:intron | 40.0% | |
| GTATCCTGAAATGCTACATG+TGG | + | chr7_3:85905625-85905644 | None:intergenic | 40.0% | |
| AAAAAATTTCACCAAGGGCC+AGG | + | chr7_3:85905914-85905933 | None:intergenic | 40.0% | |
| TCTTAAATGAGGTCGGAAAC+CGG | - | chr7_3:85905964-85905983 | Msa1132990:intron | 40.0% | |
| TTGCAGATATGAGAAACACG+AGG | - | chr7_3:85906221-85906240 | Msa1132990:intron | 40.0% | |
| TGCAGATATGAGAAACACGA+GGG | - | chr7_3:85906222-85906241 | Msa1132990:intron | 40.0% | |
| ! | CTACCTTGTTATAAGGAGAG+TGG | + | chr7_3:85906287-85906306 | None:intergenic | 40.0% |
| CTCATCATTTATCCATCCTC+TGG | - | chr7_3:85906528-85906547 | Msa1132990:CDS | 40.0% | |
| !! | TGATTGTAGCTCTAAGGATG+AGG | - | chr7_3:85906603-85906622 | Msa1132990:intron | 40.0% |
| GAGGTTACCAAAGAAAAGCT+TGG | - | chr7_3:85906622-85906641 | Msa1132990:intron | 40.0% | |
| !! | CACATACCTTTTCAAGATCC+CGG | + | chr7_3:85906687-85906706 | None:intergenic | 40.0% |
| ! | TAGAGGCTTTGCAACTTGTT+GGG | + | chr7_3:85906821-85906840 | None:intergenic | 40.0% |
| ATAGAGGCTTTGCAACTTGT+TGG | + | chr7_3:85906822-85906841 | None:intergenic | 40.0% | |
| AAAGCCTCTATACGATGAGA+AGG | - | chr7_3:85906831-85906850 | Msa1132990:intron | 40.0% | |
| TGTACCTTCTCATCGTATAG+AGG | + | chr7_3:85906838-85906857 | None:intergenic | 40.0% | |
| AGGAAAACATTGTGGCAGTT+AGG | + | chr7_3:85907089-85907108 | None:intergenic | 40.0% | |
| TTCAGCAACATCCATCACTT+GGG | + | chr7_3:85907157-85907176 | None:intergenic | 40.0% | |
| TTTCAGCAACATCCATCACT+TGG | + | chr7_3:85907158-85907177 | None:intergenic | 40.0% | |
| GTTTCAATGAACTTCTGTGG+AGG | + | chr7_3:85907602-85907621 | None:intergenic | 40.0% | |
| CACTGAAGCTAATGGAACAT+AGG | - | chr7_3:85907621-85907640 | Msa1132990:intron | 40.0% | |
| !! | ACGATACATGGTATCGACTT+CGG | + | chr7_3:85907714-85907733 | None:intergenic | 40.0% |
| AATTTGACTCCTGCAGTCAA+CGG | - | chr7_3:85907764-85907783 | Msa1132990:intron | 40.0% | |
| TTAAGCTCCACATTGAGTGA+AGG | - | chr7_3:85907843-85907862 | Msa1132990:intron | 40.0% | |
| TAAGCTCCACATTGAGTGAA+GGG | - | chr7_3:85907844-85907863 | Msa1132990:intron | 40.0% | |
| GTGAAGGGTAGTCTTTGTAT+TGG | - | chr7_3:85907859-85907878 | Msa1132990:intron | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr7_3:85908383-85908402 | Msa1132990:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr7_3:85908397-85908416 | Msa1132990:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr7_3:85908400-85908419 | Msa1132990:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr7_3:85908451-85908470 | None:intergenic | 40.0% | |
| ! | GCACTGTAGAGAATTGCTTT+TGG | - | chr7_3:85908482-85908501 | Msa1132990:intron | 40.0% |
| !! | TGTAGAGAATTGCTTTTGGC+TGG | - | chr7_3:85908486-85908505 | Msa1132990:intron | 40.0% |
| !! | GTAGAGAATTGCTTTTGGCT+GGG | - | chr7_3:85908487-85908506 | Msa1132990:intron | 40.0% |
| !! | TAGATAGTGATAGTGGTCAC+AGG | - | chr7_3:85908549-85908568 | Msa1132990:exon | 40.0% |
| ATTCCAACGTTCTTTGCTGC+TGG | + | chr7_3:85903269-85903288 | None:intergenic | 45.0% | |
| GTTACCTGTTGAACGCAGTT+AGG | + | chr7_3:85903317-85903336 | None:intergenic | 45.0% | |
| !! | TTTGATGCAGGAAGCATTGG+AGG | - | chr7_3:85903698-85903717 | Msa1132990:intron | 45.0% |
| ! | CTCATGATGGTGCGAGTAAA+GGG | - | chr7_3:85903721-85903740 | Msa1132990:intron | 45.0% |
| AACTGAGACGTGTCAAACAC+CGG | - | chr7_3:85903983-85904002 | Msa1132990:three_prime_UTR | 45.0% | |
| TTGCATCTGCAGTTTGACAG+TGG | - | chr7_3:85904403-85904422 | Msa1132990:intron | 45.0% | |
| ! | TCCTAAACAGATTGGTCGTC+TGG | - | chr7_3:85904457-85904476 | Msa1132990:intron | 45.0% |
| TCCAGACGACCAATCTGTTT+AGG | + | chr7_3:85904461-85904480 | None:intergenic | 45.0% | |
| GTGATTCTCGCTGTCAATGT+AGG | - | chr7_3:85904579-85904598 | Msa1132990:intron | 45.0% | |
| ACTACTAAGGTTACGGCATC+GGG | + | chr7_3:85904774-85904793 | None:intergenic | 45.0% | |
| GGTCGCTACTACTAAGGTTA+CGG | + | chr7_3:85904781-85904800 | None:intergenic | 45.0% | |
| ATTGGGTGGAGAGCAATTCA+TGG | - | chr7_3:85905066-85905085 | Msa1132990:intron | 45.0% | |
| TTGGGTGGAGAGCAATTCAT+GGG | - | chr7_3:85905067-85905086 | Msa1132990:intron | 45.0% | |
| CTTTCTCAGGTCTATGCTGA+AGG | - | chr7_3:85905262-85905281 | Msa1132990:intron | 45.0% | |
| TGACCTTGCTAGTGAATACC+CGG | - | chr7_3:85905408-85905427 | Msa1132990:intron | 45.0% | |
| TTACCGGGTATTCACTAGCA+AGG | + | chr7_3:85905414-85905433 | None:intergenic | 45.0% | |
| TTTGTGCTGTAGGTTGTCGA+CGG | - | chr7_3:85905669-85905688 | Msa1132990:intron | 45.0% | |
| AGCAAGTATCAAGAGCCATG+AGG | + | chr7_3:85905716-85905735 | None:intergenic | 45.0% | |
| AAATGCTGCATAGATGGACG+CGG | + | chr7_3:85906902-85906921 | None:intergenic | 45.0% | |
| GGATGCAAATGCTGCATAGA+TGG | + | chr7_3:85906908-85906927 | None:intergenic | 45.0% | |
| GTCAAACATTGCCCAAGTGA+TGG | - | chr7_3:85907143-85907162 | Msa1132990:intron | 45.0% | |
| GTCAACGGTTTGTCTGTCAA+TGG | - | chr7_3:85907779-85907798 | Msa1132990:intron | 45.0% | |
| AGACTACCCTTCACTCAATG+TGG | + | chr7_3:85907853-85907872 | None:intergenic | 45.0% | |
| ATGGAGATATAGGGCCTGTT+TGG | + | chr7_3:85908524-85908543 | None:intergenic | 45.0% | |
| AACAGGCCCTATATCTCCAT+TGG | - | chr7_3:85908524-85908543 | Msa1132990:CDS | 45.0% | |
| AGTTAAATGCGCAGAAGGGT+GGG | + | chr7_3:85908635-85908654 | None:intergenic | 45.0% | |
| TAGTTAAATGCGCAGAAGGG+TGG | + | chr7_3:85908636-85908655 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTAATTAGAAAAA+AGG | - | chr7_3:85903581-85903600 | Msa1132990:intron | 5.0% |
| CCTGTTGAACGCAGTTAGGA+GGG | + | chr7_3:85903313-85903332 | None:intergenic | 50.0% | |
| ACCTGTTGAACGCAGTTAGG+AGG | + | chr7_3:85903314-85903333 | None:intergenic | 50.0% | |
| !! | GAAGCATTGGAGGCTCATGA+TGG | - | chr7_3:85903708-85903727 | Msa1132990:intron | 50.0% |
| ! | GCTCATGATGGTGCGAGTAA+AGG | - | chr7_3:85903720-85903739 | Msa1132990:intron | 50.0% |
| ! | CAGATTGGTCGTCTGGAAGT+CGG | - | chr7_3:85904464-85904483 | Msa1132990:intron | 50.0% |
| GTCACTGGTCGCTACTACTA+AGG | + | chr7_3:85904787-85904806 | None:intergenic | 50.0% | |
| GTGGAGAGCAATTCATGGGA+TGG | - | chr7_3:85905071-85905090 | Msa1132990:intron | 50.0% | |
| GGGTATTCACTAGCAAGGTC+AGG | + | chr7_3:85905409-85905428 | None:intergenic | 50.0% | |
| ! | GATGCAAGTTGAGTCTGACC+TGG | - | chr7_3:85905888-85905907 | Msa1132990:intron | 50.0% |
| TCACCAAAGGACACATTGGC+AGG | + | chr7_3:85905992-85906011 | None:intergenic | 50.0% | |
| TGGTCTTCAGCGACTTCTTG+AGG | - | chr7_3:85906494-85906513 | Msa1132990:CDS | 50.0% | |
| ! | GCTTTGGTAGCTCTCGTCAT+CGG | + | chr7_3:85906665-85906684 | None:intergenic | 50.0% |
| ATGACGAGAGCTACCAAAGC+CGG | - | chr7_3:85906665-85906684 | Msa1132990:intron | 50.0% | |
| !! | CCTTTTCAAGATCCCGGCTT+TGG | + | chr7_3:85906681-85906700 | None:intergenic | 50.0% |
| CCAAAGCCGGGATCTTGAAA+AGG | - | chr7_3:85906678-85906697 | Msa1132990:intron | 50.0% | |
| ! | GGAACATAGGTATGGTGCCA+AGG | - | chr7_3:85907634-85907653 | Msa1132990:intron | 50.0% |
| ! | AAGCAAGGACAGCAGCCTTT+TGG | - | chr7_3:85907667-85907686 | Msa1132990:intron | 50.0% |
| AGAATGTGCCTGGAGCCAAA+AGG | + | chr7_3:85907685-85907704 | None:intergenic | 50.0% | |
| TCGGTGAGAAAGAATGTGCC+TGG | + | chr7_3:85907695-85907714 | None:intergenic | 50.0% | |
| ! | ACAGACAAACCGTTGACTGC+AGG | + | chr7_3:85907776-85907795 | None:intergenic | 50.0% |
| GTCACAGGTGCTAGGAAATC+TGG | - | chr7_3:85908578-85908597 | Msa1132990:five_prime_UTR | 50.0% | |
| GCACCAGCAGCAAAGAACGT+TGG | - | chr7_3:85903263-85903282 | Msa1132990:three_prime_UTR | 55.0% | |
| CCCTCCTAACTGCGTTCAAC+AGG | - | chr7_3:85903310-85903329 | Msa1132990:intron | 55.0% | |
| CACATGTGCCAGTGTCGTGT+TGG | - | chr7_3:85903953-85903972 | Msa1132990:three_prime_UTR | 55.0% | |
| ! | TGCCAGTGTCGTGTTGGTGT+CGG | - | chr7_3:85903959-85903978 | Msa1132990:three_prime_UTR | 55.0% |
| AGCAATAGCAGCAGCTCCTC+CGG | + | chr7_3:85905302-85905321 | None:intergenic | 55.0% | |
| AAGTTGAGTCTGACCTGGCC+TGG | - | chr7_3:85905893-85905912 | Msa1132990:intron | 55.0% | |
| AAGGACACATTGGCAGGCAC+CGG | + | chr7_3:85905986-85906005 | None:intergenic | 55.0% | |
| GTGCCTGCCAATGTGTCCTT+TGG | - | chr7_3:85905986-85906005 | Msa1132990:intron | 55.0% | |
| GCGACTTCTTGAGGAATCCC+AGG | - | chr7_3:85906503-85906522 | Msa1132990:CDS | 55.0% | |
| TGACGAGAGCTACCAAAGCC+GGG | - | chr7_3:85906666-85906685 | Msa1132990:intron | 55.0% | |
| GGGCAGAAGCTGAACCAAAC+AGG | - | chr7_3:85908507-85908526 | Msa1132990:CDS | 55.0% | |
| ! | GCCAGTGTCGTGTTGGTGTC+GGG | - | chr7_3:85903960-85903979 | Msa1132990:three_prime_UTR | 60.0% |
| TCCCGACACCAACACGACAC+TGG | + | chr7_3:85903964-85903983 | None:intergenic | 60.0% | |
| GAAGGTCCTGCTCGACCTAC+CGG | - | chr7_3:85905280-85905299 | Msa1132990:intron | 60.0% | |
| ATAGCAGCAGCTCCTCCGGT+AGG | + | chr7_3:85905298-85905317 | None:intergenic | 60.0% | |
| ATTTCACCAAGGGCCAGGCC+AGG | + | chr7_3:85905909-85905928 | None:intergenic | 60.0% | |
| !!! | GACAGCAGCCTTTTGGCTCC+AGG | - | chr7_3:85907674-85907693 | Msa1132990:intron | 60.0% |
| GGTCACAGGCTCACAGTCAC+AGG | - | chr7_3:85908563-85908582 | Msa1132990:five_prime_UTR | 60.0% | |
| GGCTCACAGTCACAGGTGCT+AGG | - | chr7_3:85908570-85908589 | Msa1132990:five_prime_UTR | 60.0% | |
| CAGAAGGGTGGGTCCAAGGT+AGG | + | chr7_3:85908624-85908643 | None:intergenic | 60.0% | |
| TGCGCAGAAGGGTGGGTCCA+AGG | + | chr7_3:85908628-85908647 | None:intergenic | 65.0% | |
| GGTCCTGCTCGACCTACCGG+AGG | - | chr7_3:85905283-85905302 | Msa1132990:intron | 70.0% | |
| GCTCCTCCGGTAGGTCGAGC+AGG | + | chr7_3:85905289-85905308 | None:intergenic | 70.0% | |
| GTCTGACCTGGCCTGGCCCT+TGG | - | chr7_3:85905900-85905919 | Msa1132990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 85903140 | 85908679 | 85903140 | ID=Msa1132990;Name=Msa1132990 |
| chr7_3 | mRNA | 85903140 | 85908679 | 85903140 | ID=Msa1132990-mRNA-1;Parent=Msa1132990;Name=Msa1132990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=120|0.41|0.61|0.72|0.94|0.88|18|425|468 |
| chr7_3 | exon | 85903140 | 85903283 | 85903140 | ID=Msa1132990-mRNA-1:exon:25854;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85903730 | 85904223 | 85903730 | ID=Msa1132990-mRNA-1:exon:25853;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85904622 | 85904771 | 85904622 | ID=Msa1132990-mRNA-1:exon:25852;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85904865 | 85905005 | 85904865 | ID=Msa1132990-mRNA-1:exon:25851;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85905120 | 85905245 | 85905120 | ID=Msa1132990-mRNA-1:exon:25850;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85905295 | 85905350 | 85905295 | ID=Msa1132990-mRNA-1:exon:25849;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85905387 | 85905393 | 85905387 | ID=Msa1132990-mRNA-1:exon:25848;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85905517 | 85905592 | 85905517 | ID=Msa1132990-mRNA-1:exon:25847;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85906065 | 85906138 | 85906065 | ID=Msa1132990-mRNA-1:exon:25846;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85906390 | 85906548 | 85906390 | ID=Msa1132990-mRNA-1:exon:25845;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85906692 | 85906835 | 85906692 | ID=Msa1132990-mRNA-1:exon:25844;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85906956 | 85906961 | 85906956 | ID=Msa1132990-mRNA-1:exon:25843;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85907272 | 85907404 | 85907272 | ID=Msa1132990-mRNA-1:exon:25842;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85907548 | 85907554 | 85907548 | ID=Msa1132990-mRNA-1:exon:25841;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85908084 | 85908111 | 85908084 | ID=Msa1132990-mRNA-1:exon:25840;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85908217 | 85908223 | 85908217 | ID=Msa1132990-mRNA-1:exon:25839;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85908414 | 85908421 | 85908414 | ID=Msa1132990-mRNA-1:exon:25838;Parent=Msa1132990-mRNA-1 |
| chr7_3 | exon | 85908488 | 85908679 | 85908488 | ID=Msa1132990-mRNA-1:exon:25837;Parent=Msa1132990-mRNA-1 |
| chr7_3 | five_prime_UTR | 85908560 | 85908679 | 85908560 | ID=Msa1132990-mRNA-1:five_prime_utr;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85908488 | 85908559 | 85908488 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85908414 | 85908421 | 85908414 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85908217 | 85908223 | 85908217 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85908084 | 85908111 | 85908084 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85907548 | 85907554 | 85907548 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85907272 | 85907404 | 85907272 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85906956 | 85906961 | 85906956 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85906692 | 85906835 | 85906692 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85906390 | 85906548 | 85906390 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85906065 | 85906138 | 85906065 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85905517 | 85905592 | 85905517 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85905387 | 85905393 | 85905387 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85905295 | 85905350 | 85905295 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85905120 | 85905245 | 85905120 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85904865 | 85905005 | 85904865 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85904622 | 85904771 | 85904622 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | CDS | 85904011 | 85904223 | 85904011 | ID=Msa1132990-mRNA-1:cds;Parent=Msa1132990-mRNA-1 |
| chr7_3 | three_prime_UTR | 85903730 | 85904010 | 85903730 | ID=Msa1132990-mRNA-1:three_prime_utr;Parent=Msa1132990-mRNA-1 |
| chr7_3 | three_prime_UTR | 85903140 | 85903283 | 85903140 | ID=Msa1132990-mRNA-1:three_prime_utr;Parent=Msa1132990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
