AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251400


Find 314 sgRNAs with CRISPR-Local

Find 1199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr2_2 gene 40964111 40981629 40964111 ID=Msa0251400;Name=Msa0251400
chr2_2 mRNA 40964111 40981629 40964111 ID=Msa0251400-mRNA-1;Parent=Msa0251400;Name=Msa0251400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=47|0.93|0.93|1|1|1|33|489|1185
chr2_2 exon 40964111 40964631 40964111 ID=Msa0251400-mRNA-1:exon:12835;Parent=Msa0251400-mRNA-1
chr2_2 exon 40965671 40965782 40965671 ID=Msa0251400-mRNA-1:exon:12834;Parent=Msa0251400-mRNA-1
chr2_2 exon 40966471 40966599 40966471 ID=Msa0251400-mRNA-1:exon:12833;Parent=Msa0251400-mRNA-1
chr2_2 exon 40967258 40967360 40967258 ID=Msa0251400-mRNA-1:exon:12832;Parent=Msa0251400-mRNA-1
chr2_2 exon 40967430 40967483 40967430 ID=Msa0251400-mRNA-1:exon:12831;Parent=Msa0251400-mRNA-1
chr2_2 exon 40968425 40968543 40968425 ID=Msa0251400-mRNA-1:exon:12830;Parent=Msa0251400-mRNA-1
chr2_2 exon 40968626 40968703 40968626 ID=Msa0251400-mRNA-1:exon:12829;Parent=Msa0251400-mRNA-1
chr2_2 exon 40968799 40968922 40968799 ID=Msa0251400-mRNA-1:exon:12828;Parent=Msa0251400-mRNA-1
chr2_2 exon 40969004 40969106 40969004 ID=Msa0251400-mRNA-1:exon:12827;Parent=Msa0251400-mRNA-1
chr2_2 exon 40969273 40969393 40969273 ID=Msa0251400-mRNA-1:exon:12826;Parent=Msa0251400-mRNA-1
chr2_2 exon 40969499 40969586 40969499 ID=Msa0251400-mRNA-1:exon:12825;Parent=Msa0251400-mRNA-1
chr2_2 exon 40969676 40969771 40969676 ID=Msa0251400-mRNA-1:exon:12824;Parent=Msa0251400-mRNA-1
chr2_2 exon 40971723 40971781 40971723 ID=Msa0251400-mRNA-1:exon:12823;Parent=Msa0251400-mRNA-1
chr2_2 exon 40971950 40972085 40971950 ID=Msa0251400-mRNA-1:exon:12822;Parent=Msa0251400-mRNA-1
chr2_2 exon 40972165 40972262 40972165 ID=Msa0251400-mRNA-1:exon:12821;Parent=Msa0251400-mRNA-1
chr2_2 exon 40972496 40972589 40972496 ID=Msa0251400-mRNA-1:exon:12820;Parent=Msa0251400-mRNA-1
chr2_2 exon 40972772 40972941 40972772 ID=Msa0251400-mRNA-1:exon:12819;Parent=Msa0251400-mRNA-1
chr2_2 exon 40973028 40973101 40973028 ID=Msa0251400-mRNA-1:exon:12818;Parent=Msa0251400-mRNA-1
chr2_2 exon 40973570 40973626 40973570 ID=Msa0251400-mRNA-1:exon:12817;Parent=Msa0251400-mRNA-1
chr2_2 exon 40974489 40974620 40974489 ID=Msa0251400-mRNA-1:exon:12816;Parent=Msa0251400-mRNA-1
chr2_2 exon 40974712 40974811 40974712 ID=Msa0251400-mRNA-1:exon:12815;Parent=Msa0251400-mRNA-1
chr2_2 exon 40974908 40975051 40974908 ID=Msa0251400-mRNA-1:exon:12814;Parent=Msa0251400-mRNA-1
chr2_2 exon 40975156 40975281 40975156 ID=Msa0251400-mRNA-1:exon:12813;Parent=Msa0251400-mRNA-1
chr2_2 exon 40976006 40976087 40976006 ID=Msa0251400-mRNA-1:exon:12812;Parent=Msa0251400-mRNA-1
chr2_2 exon 40976183 40976243 40976183 ID=Msa0251400-mRNA-1:exon:12811;Parent=Msa0251400-mRNA-1
chr2_2 exon 40977719 40977851 40977719 ID=Msa0251400-mRNA-1:exon:12810;Parent=Msa0251400-mRNA-1
chr2_2 exon 40977947 40978024 40977947 ID=Msa0251400-mRNA-1:exon:12809;Parent=Msa0251400-mRNA-1
chr2_2 exon 40978305 40978438 40978305 ID=Msa0251400-mRNA-1:exon:12808;Parent=Msa0251400-mRNA-1
chr2_2 exon 40979330 40979406 40979330 ID=Msa0251400-mRNA-1:exon:12807;Parent=Msa0251400-mRNA-1
chr2_2 exon 40979562 40979692 40979562 ID=Msa0251400-mRNA-1:exon:12806;Parent=Msa0251400-mRNA-1
chr2_2 exon 40979777 40979950 40979777 ID=Msa0251400-mRNA-1:exon:12805;Parent=Msa0251400-mRNA-1
chr2_2 exon 40980052 40980117 40980052 ID=Msa0251400-mRNA-1:exon:12804;Parent=Msa0251400-mRNA-1
chr2_2 exon 40981310 40981629 40981310 ID=Msa0251400-mRNA-1:exon:12803;Parent=Msa0251400-mRNA-1
chr2_2 five_prime_UTR 40981583 40981629 40981583 ID=Msa0251400-mRNA-1:five_prime_utr;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40981310 40981582 40981310 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40980052 40980117 40980052 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40979777 40979950 40979777 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40979562 40979692 40979562 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40979330 40979406 40979330 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40978305 40978438 40978305 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40977947 40978024 40977947 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40977719 40977851 40977719 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40976183 40976243 40976183 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40976006 40976087 40976006 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40975156 40975281 40975156 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40974908 40975051 40974908 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40974712 40974811 40974712 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40974489 40974620 40974489 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40973570 40973626 40973570 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40973028 40973101 40973028 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40972772 40972941 40972772 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40972496 40972589 40972496 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40972165 40972262 40972165 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40971950 40972085 40971950 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40971723 40971781 40971723 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40969676 40969771 40969676 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40969499 40969586 40969499 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40969273 40969393 40969273 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40969004 40969106 40969004 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40968799 40968922 40968799 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40968626 40968703 40968626 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40968425 40968543 40968425 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40967430 40967483 40967430 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40967258 40967360 40967258 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40966471 40966599 40966471 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40965671 40965782 40965671 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 CDS 40964600 40964631 40964600 ID=Msa0251400-mRNA-1:cds;Parent=Msa0251400-mRNA-1
chr2_2 three_prime_UTR 40964111 40964599 40964111 ID=Msa0251400-mRNA-1:three_prime_utr;Parent=Msa0251400-mRNA-1
Gene Sequence

>Msa0251400

ATGCATCGCCAACCGCAACCACCACCACCTTCCACCGCACGCGCGCGTTGCGCCGGTTGCCGGACCTACTTCTCCGCCGCTCAAGGTGTGGCGGAGTTACCTTGTCCGAAGTGTCAAATGCCGCACGTGTTCTTCGTCGACTCATCTACAGTGAAAATCCGGTGTTCTTCGTGTAAGGCGGTTGTGAATGCTCCGAGTAATCTTGCTAAGTTTCCGTGTCCGCAATGTCATGTGAGGATTGATGTTCATGCTGATGTTGAAGAAGTTAACGAGCTGGTTAATGAAGTGGAGCAAGAAGAAGGCGATGGAGGTATCGCCGGAGAAACATTTACAGATTATCGTCCATCCAAGCTATCTATCGGATCTCCACACCCAGATCCGATTGTAGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCTACTTATGATCCAAAGATTAAGAATGATTTGGAACGTTCAAAGGCTTTGTCATGCTTGCAGATCGAGACATTGGTTTATGCTTGTCAGAGACACCTTCAACACATTCCCAGTGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCTGGCGTAGGTAAAGGTCGAACAGTCGCTGGGCTAATATGGGAGAACTGGCACCATGGAAGGAGAAAAGCCTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGACATGGGTGCAAGTTGCATTGCAGTGCATGCTTTGAATAAACTGCCTTATACTAAGCTTGATACAAAGTCTGTTGGAGTTAAGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCATCATCTGACAGAGGTCGTACCCGTATGCAACAGCTTTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGATAAGAAGCCGACGAAAACTGGTCAAGCAGTACTTGATATACAGGCTCAACTACCTGAAGCTCGGGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGTCTTGGCCTTTGGGGAGCTGGGACTTATTTCCCTGATTTTGGTGAATTTCTAGGTGCTCTTGAGAAAGGGGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACTTGAAAGCAAGGGGGATGTATTTATGTCGCACACTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGACGCACCATTAGATGATAGAATGATGCATGCGTATAAAAAGGCTACAGAAGTTTGGTTGGATTTGCGTAAGAAGTTGCAGTCTGTCATTGAGTTAATATCTGACAAAATTAACACTAGACAACTATGGCGATCATATTGGGCAAGCCACCAGAGATTCTTCAGACATATGTGTATGTCTGCTAAAGTTCCTACTGCAGTGAGATTGGTGAACCAAGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTGCAGAGTACGGGGGAAGCAAGGACGGAGGAAGCTGTTTCAAAATACGGCTCTGAATTTGATGACTTTATTTCTGGACCTCGTGAGTTGCTGCTAAAATTTGTTGAAGACAATTTCCCATTGCCACAAAAGCCTGAACTTCTCCCCGAAGATGACGGAGTAAAGGAGCTTCAAAAGAAGAGGCACTTGGCAAGTCCTGACGTTTCAGGAAAATCTCGAGTCAGAAAAGTTGCCAAGCGGCAGCCGCCTAGTGATTCTGAAAGTGATGAAGAATCTGAAACTGCCTCTGTTCCTGATTCTTCTGATTCTGATTACGGACCAGAAGGGAATGAAAGTGCTGCCTCTGGTCTTGAATCTTCCGACTCTGATTACGAGGAGTTTCAGAAATGTGAAATATGTGGCACTGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCACTGTGGAAAATACGCTCATCACTCATGCTTGGTGCCACCAATTAGCGATTTTGTTCTTGAAGAATGGGCATGTGATTTGTGCAAGGATACAACCGTAAACTATCTCCCTCCTGGAACAGATATAATTGAACTCCAGAAAAGGTATGACACAGCCATGGAGTGCAAGAAAAATATACTAGAGATGATTTGTGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCCATGACAAAGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTCAGGGCCCCTAGTGGAACGGGTGTGTTTTATCAGACTCGAAATACAAAAGATGTCACTGCCGAGATGGTCAACATGAATGAGAAAAAGCTCTTTATGGAAGGTAAGAAGTTAGTGGCCATCATCTCTGAAGCAGGATCAGCTGGCGTTTCGTTGCAGGCAGACCGAAGAGTGATAAATCAGAAAAGAAGGGTTCACTTGACTCTTGAACTTCCATGGAGTGCCGACCGAGCAATTCAGCAGTTACTATTTGCAAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTTTGACTCAGGGAGATCGTAGGGCAGGGCCTTCTTTAAGTGCATATAATTATGATAGTCCTTATGGGAAGAGAGCACTGATGCTTTTGTACAATGGAATACTGGAGCGGGATCCCCTTCCTGTTGTACCTCCAGGATGCTTATCTGACAGACCAGCTACAATCAAAGATTTTATTATGCAGGCAAAAGCTGCTCTTCTTTCCGTTGGAATTTTTAAGGACGACGGCCTTGGAGATGATGATATGAATTGCTACATTGATGATAAAAATGATATACACAATCTTGGACGATTTCTCAACCGGCTTTTAGGAATAGCTCCTGAAACTCAGAATAGGCTATTTGAGTTATTTGTGAATATCTTGGAACTTCTTGTTAATAAAGCTCGCATTGAAGGTAACCTTGATACAGGCATTGTTGACTTGAAAGCTAATGTCATTGAACTGCAAGGGACTCCAAAGACAGTCTATGTTGATCAAATGAGCGGGGCTTCAACTATTCTGTTCACATTCACCTTGGATCGTGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGTTGGATTTTGTTCAACTGGTGATGGCTTCTATAAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATGTTATTTTAGCATTTGAAAGTTCGGCTCCATCTATGTATAAGATAGTTCGTCCTCCTACCGGAGAATCACCTCGGGATATGCATCTGCTAGAATTAACTAGAAAATATTCAAAAGTTTCATCTTTAAAGGAGGCCCAAATTGGTTGGGAAACCGAATATGAAGCTTCATTTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGTAAGTTCTGTTCAGTTGGCTCAAGAATACAGCAAGTAAATGTCTTAGGTGGTGTTATTCTTCCTGTTTGGGGAAACATAGATAAGGCGCTCTCTAAGCAGGCCCGATACATGCATAAGAGGCTACGCATTGTTCGTGTTGAAACTACATCAGATAACAGACATATAGTAGGGCTTCTTGTTCCTAATGCAGCAGTTGAAACTGTGCTTCAAGGTTTATCATACGTTATAGAACTGGATGATTGA

Protein sequence

>Msa0251400

MHRQPQPPPPSTARARCAGCRTYFSAAQGVAELPCPKCQMPHVFFVDSSTVKIRCSSCKAVVNAPSNLAKFPCPQCHVRIDVHADVEEVNELVNEVEQEEGDGGIAGETFTDYRPSKLSIGSPHPDPIVETSSLSAVQPPEPTYDPKIKNDLERSKALSCLQIETLVYACQRHLQHIPSGARAGFFIGDGAGVGKGRTVAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDMGASCIAVHALNKLPYTKLDTKSVGVKEGVIFSTYSSLIASSDRGRTRMQQLCHKAKNLVPEKDKKPTKTGQAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGAGTYFPDFGEFLGALEKGGVGALELVAMDLKARGMYLCRTLSYKGAEFEIIDAPLDDRMMHAYKKATEVWLDLRKKLQSVIELISDKINTRQLWRSYWASHQRFFRHMCMSAKVPTAVRLVNQALMEDKCVVIGLQSTGEARTEEAVSKYGSEFDDFISGPRELLLKFVEDNFPLPQKPELLPEDDGVKELQKKRHLASPDVSGKSRVRKVAKRQPPSDSESDEESETASVPDSSDSDYGPEGNESAASGLESSDSDYEEFQKCEICGTEEERENLLQCSHCGKYAHHSCLVPPISDFVLEEWACDLCKDTTVNYLPPGTDIIELQKRYDTAMECKKNILEMICALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGTGVFYQTRNTKDVTAEMVNMNEKKLFMEGKKLVAIISEAGSAGVSLQADRRVINQKRRVHLTLELPWSADRAIQQLLFANLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSPYGKRALMLLYNGILERDPLPVVPPGCLSDRPATIKDFIMQAKAALLSVGIFKDDGLGDDDMNCYIDDKNDIHNLGRFLNRLLGIAPETQNRLFELFVNILELLVNKARIEGNLDTGIVDLKANVIELQGTPKTVYVDQMSGASTILFTFTLDRGVSWELANTMLNEKQKVGFCSTGDGFYKSKREWLGKRHVILAFESSAPSMYKIVRPPTGESPRDMHLLELTRKYSKVSSLKEAQIGWETEYEASFKQCMHGPNCKIGKFCSVGSRIQQVNVLGGVILPVWGNIDKALSKQARYMHKRLRIVRVETTSDNRHIVGLLVPNAAVETVLQGLSYVIELDD*