AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0144780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144780 MtrunA17_Chr1g0155911 100.000 1195 0 0 1 1195 1 1195 0.0 2502
Msa0144780 MtrunA17_Chr8g0345421 37.227 1190 652 22 20 1179 3 1127 0.0 750
Msa0144780 MtrunA17_Chr3g0136911 34.946 1199 663 30 36 1182 53 1186 0.0 665
Msa0144780 MtrunA17_Chr8g0375171 34.413 1235 690 31 1 1182 17 1184 0.0 660
Msa0144780 MtrunA17_Chr4g0069391 26.960 1250 711 41 40 1175 29 1190 1.32e-102 352
Msa0144780 MtrunA17_Chr3g0142431 47.234 235 117 1 948 1175 2 236 3.95e-68 229
Msa0144780 MtrunA17_Chr3g0142441 36.426 291 158 6 551 828 1 277 8.84e-48 172
Msa0144780 MtrunA17_Chr4g0016641 26.829 369 235 6 782 1120 653 1016 4.55e-35 145
Msa0144780 MtrunA17_CPg0493041 26.829 369 235 6 782 1120 653 1016 4.55e-35 145
Msa0144780 MtrunA17_Chr1g0154941 36.364 187 100 6 28 214 15 182 2.22e-28 113
Msa0144780 MtrunA17_Chr1g0159041 25.407 307 184 9 709 1013 53 316 1.05e-20 94.7
Msa0144780 MtrunA17_Chr4g0015541 30.233 129 75 2 985 1098 1 129 3.32e-12 68.9
Msa0144780 MtrunA17_Chr1g0156761 62.712 59 13 1 419 477 21 70 3.54e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144780 AT4G21710.1 94.426 1184 66 0 8 1191 5 1188 0.0 2345
Msa0144780 AT5G45140.2 36.379 1204 692 23 4 1183 7 1160 0.0 736
Msa0144780 AT5G45140.1 36.379 1204 692 23 4 1183 7 1160 0.0 736
Msa0144780 AT3G23780.1 34.992 1226 685 27 4 1182 10 1170 0.0 652
Msa0144780 AT3G23780.2 34.992 1226 685 27 4 1182 10 1170 0.0 652
Msa0144780 AT3G18090.1 36.029 1113 604 24 117 1182 2 1053 0.0 622
Msa0144780 AT3G18090.2 34.139 952 526 23 117 1028 2 892 1.64e-149 472
Msa0144780 AT3G18090.3 34.247 949 523 23 117 1025 2 889 2.92e-149 472
Msa0144780 AT5G45140.3 34.568 810 471 17 28 823 31 795 4.07e-144 456
Msa0144780 AT1G29940.1 26.278 1252 736 34 36 1189 16 1178 1.87e-106 363
Msa0144780 ATCG00190.1 28.267 375 228 9 782 1123 650 1016 6.56e-34 142

Find 327 sgRNAs with CRISPR-Local

Find 697 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCATCCATCACTGATTT+TGG 0.116658 1_4:+4302876 Msa0144780:CDS
TCCTATCATTATTGTGTTTC+GGG 0.145166 1_4:+4298851 Msa0144780:CDS
ATCAGGCTCCTTTCTTCTTT+TGG 0.174870 1_4:-4305576 None:intergenic
ACTCACTTGCTACTGGTAAT+TGG 0.182380 1_4:+4300448 Msa0144780:CDS
ACTCTTGTCAAAGAAGATTT+TGG 0.189211 1_4:+4303610 Msa0144780:CDS
ACCTCTTTAGTAAGCATTCT+TGG 0.208895 1_4:-4305538 None:intergenic
CGTCTTCCTCTTCCATTTGC+TGG 0.232324 1_4:-4296283 None:intergenic
TATTCCTACCAGGGTTCTTC+AGG 0.232935 1_4:+4298786 Msa0144780:intron
GGAGGTTATTTCATTATTAA+TGG 0.245615 1_4:+4298474 Msa0144780:CDS
CTATCTCCTGCATGGTGTTC+TGG 0.246403 1_4:-4296409 None:intergenic
TGGGTTAAGAGGTATGTTTC+AGG 0.247868 1_4:-4305830 None:intergenic
ATGCTTCAACCTTTGGTAAT+AGG 0.250696 1_4:-4305060 None:intergenic
GCATGGTTCTTATGATAAAT+TGG 0.252027 1_4:+4303738 Msa0144780:CDS
TATTGTTCATTGTATTTATA+CGG 0.254638 1_4:-4306017 None:intergenic
GTGGCCATTTCATGTTATTC+TGG 0.256038 1_4:+4303390 Msa0144780:CDS
TTCCTATCATTATTGTGTTT+CGG 0.257329 1_4:+4298850 Msa0144780:CDS
GTATCAGAATATGCTTCTTC+TGG 0.286298 1_4:-4302838 None:intergenic
AAAATACTCACTTGTCCTTC+TGG 0.287121 1_4:-4301273 None:intergenic
CAGGTTGCACTTGATTATAT+TGG 0.290828 1_4:+4299718 Msa0144780:intron
TAACTAGACCGAAGCATAAT+AGG 0.291712 1_4:-4298387 None:intergenic
ATTATTGTGTTTCGGGCATT+GGG 0.302301 1_4:+4298858 Msa0144780:CDS
CTCACTTGCTACTGGTAATT+GGG 0.304657 1_4:+4300449 Msa0144780:CDS
GATCAAACAGTCTTTCCTTT+AGG 0.305989 1_4:-4305229 None:intergenic
TTCAGCAGCATATCCTATTC+TGG 0.311071 1_4:+4301433 Msa0144780:CDS
CATTATTGTGTTTCGGGCAT+TGG 0.315005 1_4:+4298857 Msa0144780:CDS
TCTGGTGAGGATGTTATTAT+TGG 0.320139 1_4:+4303884 Msa0144780:CDS
TGTTTATCCACAATGAATAA+AGG 0.325748 1_4:-4302445 None:intergenic
CTGCGCATATATACAGATTA+TGG 0.328114 1_4:+4302409 Msa0144780:CDS
TTCCTAAGCCTAGCAGCTTT+AGG 0.332431 1_4:-4297541 None:intergenic
GAACAAAATGATGATGGATT+TGG 0.335608 1_4:+4296241 Msa0144780:exon
CTTACAGTAACATCTGTAAA+AGG 0.337964 1_4:-4304499 None:intergenic
GTATCACAAATGCTTCTTCC+AGG 0.341847 1_4:-4298962 None:intergenic
TGTGGATTGACAATAATATC+AGG 0.342341 1_4:-4304385 None:intergenic
CACCCAAACAAAACGCATTC+AGG 0.346587 1_4:-4305966 None:intergenic
CAATAGACCGTGGCTTCTTT+CGG 0.354605 1_4:+4303451 Msa0144780:CDS
CCCACATAAGCATACTTGTT+AGG 0.355406 1_4:-4298567 None:intergenic
GACCTGGCAGGTCCTTTACT+TGG 0.355932 1_4:+4300112 Msa0144780:CDS
CGGCTACTTCTGTGCGCACT+TGG 0.356082 1_4:+4300043 Msa0144780:CDS
CAACCATATGCTTCAACCTT+TGG 0.356626 1_4:-4305067 None:intergenic
TCACAGCCCAAGCATCTTCT+TGG 0.359604 1_4:-4296322 None:intergenic
AATGTCCTAACCAACATATC+AGG 0.360678 1_4:-4301652 None:intergenic
TGTTTGTGCGCATGCTCTCT+CGG 0.371135 1_4:+4298637 Msa0144780:CDS
CGTGATGGAGGTCTTCGATT+TGG 0.372874 1_4:+4305161 Msa0144780:CDS
TTGCTTTGATAGCAAATTGC+AGG 0.373151 1_4:-4300401 None:intergenic
GGCAAAATAACGAGGAAAAC+TGG 0.376797 1_4:-4306132 None:intergenic
GAAGATGATAGGGATCATTA+TGG 0.380040 1_4:+4300076 Msa0144780:CDS
CCATCAGATTCCGTCATCAT+TGG 0.381582 1_4:-4297499 None:intergenic
GGTGAAGAATCTGGCCTTGA+TGG 0.390834 1_4:+4301394 Msa0144780:CDS
AGTTTACGCCATAGTGAAAC+TGG 0.391101 1_4:+4303980 Msa0144780:CDS
TTGATGTTAATACTGAAGTT+GGG 0.392600 1_4:+4302359 Msa0144780:CDS
TCTAACTACCTCAGCGAAAT+CGG 0.395109 1_4:-4296492 None:intergenic
TTACCAAAGGTTGAAGCATA+TGG 0.395470 1_4:+4305064 Msa0144780:CDS
GGAATTTCAGTTCGAATGTA+AGG 0.396044 1_4:-4298831 None:intergenic
CTACTATTCCAGTTTCACTA+TGG 0.397112 1_4:-4303988 None:intergenic
GGCGGAGGGCTGAAGATGAT+AGG 0.397377 1_4:+4300065 Msa0144780:CDS
CGAAGATTGAATTCTCCTAT+AGG 0.398531 1_4:+4300654 Msa0144780:CDS
GGAGTTGCTTCGTCCTTCCC+TGG 0.399636 1_4:+4298944 Msa0144780:CDS
CTGTGGACTGGTGAAGAATC+TGG 0.401471 1_4:+4301385 Msa0144780:CDS
TTCTGTGCGCACTTGGGCGG+AGG 0.402357 1_4:+4300050 Msa0144780:CDS
GTTTATTTCTTGAACTAGAA+AGG 0.402999 1_4:-4305808 None:intergenic
TCATGCCATCCACCATCTTC+CGG 0.404494 1_4:-4302604 None:intergenic
ACCTGATTGTGGTCAGGAAA+TGG 0.407698 1_4:-4302919 None:intergenic
CCAGGATTATGCTGAGATTC+GGG 0.408643 1_4:-4296461 None:intergenic
GACATGCCCTGGACTGTAGA+AGG 0.418551 1_4:+4304355 Msa0144780:CDS
GCCAGGATTATGCTGAGATT+CGG 0.418840 1_4:-4296462 None:intergenic
TACATTACCAGATGCGATAT+AGG 0.422509 1_4:-4305876 None:intergenic
CAATTACCTTCACGTCCTAT+AGG 0.424102 1_4:-4300669 None:intergenic
GGTTGAGATTCGTGAAAGTA+AGG 0.425517 1_4:+4304242 Msa0144780:CDS
ACCATGGTGTTGGCTCTATC+CGG 0.425755 1_4:-4303637 None:intergenic
ATAACCAGAATAACATGAAA+TGG 0.429288 1_4:-4303394 None:intergenic
ATTAGGTTCCTATTATGCTT+CGG 0.429514 1_4:+4298379 Msa0144780:intron
GAATTTGAACAAAATGATGA+TGG 0.431624 1_4:+4296235 Msa0144780:exon
TCAGTAGCCTTTCAAGTGTT+GGG 0.432696 1_4:+4305730 Msa0144780:three_prime_UTR
CTTAAAGACATAGACATGAT+TGG 0.434546 1_4:-4298535 None:intergenic
CTCGCTTCCTATATCGCATC+TGG 0.435756 1_4:+4305869 Msa0144780:three_prime_UTR
GTTGATGTTAATACTGAAGT+TGG 0.437128 1_4:+4302358 Msa0144780:CDS
GAACAAAACTGACATTGTTC+AGG 0.439610 1_4:+4305346 Msa0144780:CDS
CATTCATTCTTTGCAGCAAA+GGG 0.440049 1_4:+4302492 Msa0144780:CDS
TTGTCTCAAAACCACGCATT+TGG 0.441327 1_4:-4304983 None:intergenic
TCAGTCTGCTATGGGAAAAC+AGG 0.442211 1_4:+4303046 Msa0144780:CDS
TCTAAGAGGGTCATTAAGAA+AGG 0.442549 1_4:+4297598 Msa0144780:CDS
TTCGTAAATGGTTGCTGGAT+GGG 0.443022 1_4:+4301616 Msa0144780:CDS
GAGAAGGATTTGACCGAGCT+TGG 0.443750 1_4:+4298432 Msa0144780:CDS
ATTATGCAGCTGTCTTGGTT+TGG 0.447375 1_4:-4301217 None:intergenic
CTCTCTCGGGCTAGTGCCAA+AGG 0.447596 1_4:+4298651 Msa0144780:CDS
CGAGGTAGTGATGAGGCTAC+TGG 0.448765 1_4:-4305850 None:intergenic
ACATATATGCTATGACTTTG+CGG 0.448778 1_4:+4298908 Msa0144780:CDS
GGGGAAGGTGGCTGCCCACA+TGG 0.449187 1_4:+4304456 Msa0144780:CDS
ATTTGTGATACAAAATCAAC+AGG 0.449429 1_4:+4298974 Msa0144780:CDS
TGAACAATACCATTCGAAAC+TGG 0.450071 1_4:-4303094 None:intergenic
TCACGTGACCGCCCCTCAGC+AGG 0.450469 1_4:-4305143 None:intergenic
GAATGTCATTTCCCAACAAA+AGG 0.450473 1_4:-4305763 None:intergenic
TCAAAATTTACAATTCCAGC+AGG 0.453217 1_4:-4303284 None:intergenic
ATGGTGCAGTGTGTTGATAA+TGG 0.455789 1_4:+4300366 Msa0144780:intron
GCTGCTCTTCCAAGAGCTAA+TGG 0.455955 1_4:+4305501 Msa0144780:CDS
TCTCAACCCATCAGCATTTG+TGG 0.456068 1_4:-4304227 None:intergenic
ATCAGTAGCCTTTCAAGTGT+TGG 0.458400 1_4:+4305729 Msa0144780:three_prime_UTR
GATGAGGCTACTGGGTTAAG+AGG 0.459410 1_4:-4305841 None:intergenic
GCGAAATCGGACTGATGGCC+AGG 0.459680 1_4:-4296479 None:intergenic
GGTGATGCCTTCTACAGTCC+AGG 0.461573 1_4:-4304362 None:intergenic
ACGATTTATAAGATAAGCTT+CGG 0.462716 1_4:+4297457 Msa0144780:CDS
TGTTGCTCTTCCTGAGATAG+AGG 0.464497 1_4:-4303917 None:intergenic
AGTAAGCATTCTTGGAGCTA+TGG 0.468466 1_4:-4305530 None:intergenic
GCCCGAAACACAATAATGAT+AGG 0.468885 1_4:-4298852 None:intergenic
AGCCACGGTCTATTGATGAT+TGG 0.469458 1_4:-4303443 None:intergenic
ATACCTTCTCGAATGACAAT+TGG 0.469660 1_4:+4304412 Msa0144780:CDS
TCCAAGAATGCTTACTAAAG+AGG 0.470301 1_4:+4305537 Msa0144780:CDS
TGGTGCAGTGTGTTGATAAT+GGG 0.471555 1_4:+4300367 Msa0144780:intron
TGGCCATAGCCATTAGCTCT+TGG 0.472606 1_4:-4305510 None:intergenic
AATACAATGAACAATACATA+TGG 0.473339 1_4:+4306024 Msa0144780:three_prime_UTR
GAAAGTTGACTAGAGATGTC+AGG 0.473617 1_4:+4300257 Msa0144780:CDS
TGGAAATAAGAGGCTGGACC+TGG 0.473901 1_4:+4300096 Msa0144780:CDS
TGTCCTTCTGGTGTTTCTGC+CGG 0.475033 1_4:-4301261 None:intergenic
AAACAGGGCACAAGAGTGTC+TGG 0.475708 1_4:+4303866 Msa0144780:intron
TGAGAAGGTTCTTATTGCTC+AGG 0.475780 1_4:+4298500 Msa0144780:CDS
CTTCATTGCTTAGGATACCT+TGG 0.476392 1_4:+4303187 Msa0144780:intron
ACCATTTCCTGACCACAATC+AGG 0.477185 1_4:+4302918 Msa0144780:CDS
AAATCACCCAAGAAGATGCT+TGG 0.478143 1_4:+4296315 Msa0144780:CDS
AGTCATAGCATATATGTTCA+AGG 0.478209 1_4:-4298902 None:intergenic
ACCTAACAAGTATGCTTATG+TGG 0.478358 1_4:+4298566 Msa0144780:CDS
CAGTCGTCCTTTATTCATTG+TGG 0.479150 1_4:+4302438 Msa0144780:CDS
TGTGAATTATGCAGCTGTCT+TGG 0.480800 1_4:-4301222 None:intergenic
TGCTAAGGACATCCTTCAAA+AGG 0.481337 1_4:+4299875 Msa0144780:CDS
ACAGCTGCATAATTCACAAT+GGG 0.482151 1_4:+4301227 Msa0144780:CDS
AAACGAATTCGACCAGCAAA+TGG 0.482700 1_4:+4296271 Msa0144780:CDS
CAGGCCCTCGTCCACGAGAA+TGG 0.484101 1_4:-4305100 None:intergenic
TCTTCGCAAGTGTGATAAAG+TGG 0.484935 1_4:-4300637 None:intergenic
ATATTTACCTGATTGTGGTC+AGG 0.486379 1_4:-4302925 None:intergenic
GACATTCCATTTATATGTCA+AGG 0.489193 1_4:+4305779 Msa0144780:three_prime_UTR
TTCCTAAAGCTGCTAGGCTT+AGG 0.490381 1_4:+4297539 Msa0144780:CDS
CATTGAGAAAGCTGAGACGT+CGG 0.490993 1_4:+4301671 Msa0144780:CDS
TACCTTGCCAATGAAAACTT+TGG 0.492786 1_4:-4297659 None:intergenic
CACAGCCCAAGCATCTTCTT+GGG 0.493374 1_4:-4296321 None:intergenic
TAATACGTATCAGTCTGCTA+TGG 0.493398 1_4:+4303037 Msa0144780:CDS
ATGCTTCCCCATGTTGGTGT+TGG 0.495081 1_4:+4299900 Msa0144780:CDS
AATCACCCAAGAAGATGCTT+GGG 0.495727 1_4:+4296316 Msa0144780:CDS
GATATATTCTATAAAGCCCT+TGG 0.497908 1_4:-4302635 None:intergenic
TACTAGAGCTGGAGTGTCAC+AGG 0.497939 1_4:+4300491 Msa0144780:CDS
ATTCCTACCAGGGTTCTTCA+GGG 0.499140 1_4:+4298787 Msa0144780:intron
CTTCAGGAATCACCGGAAGA+TGG 0.499566 1_4:+4302592 Msa0144780:intron
GTTTGTGCGCATGCTCTCTC+GGG 0.501249 1_4:+4298638 Msa0144780:CDS
TATTATTTAGGCCTGTGGAC+TGG 0.503091 1_4:+4301373 Msa0144780:intron
AATGCTGCGGGTACTAGAGC+TGG 0.503185 1_4:+4300480 Msa0144780:CDS
TGCTATGGGAAAACAGGCAA+TGG 0.504068 1_4:+4303052 Msa0144780:CDS
CTAAAGAGTCCGCCAAGTAA+AGG 0.504424 1_4:-4300124 None:intergenic
CAGCTTATCGAGTGTATCAT+GGG 0.504678 1_4:+4304436 Msa0144780:CDS
CATTGTTTCCTAAAGCTGCT+AGG 0.505265 1_4:+4297533 Msa0144780:CDS
AGTACTGACATTAATTGTCA+TGG 0.507465 1_4:-4302689 None:intergenic
GCGACCCTGATATGTTGGTT+AGG 0.509462 1_4:+4301647 Msa0144780:CDS
TTTCGTAAATGGTTGCTGGA+TGG 0.509610 1_4:+4301615 Msa0144780:CDS
TCAGCTTATCGAGTGTATCA+TGG 0.509852 1_4:+4304435 Msa0144780:CDS
TGTCAGGGGTTATGTGCAAA+AGG 0.510229 1_4:+4300273 Msa0144780:CDS
ATGCTTATGTGGGTGAAGTT+CGG 0.510668 1_4:+4298577 Msa0144780:CDS
TCTGTGCGCACTTGGGCGGA+GGG 0.511484 1_4:+4300051 Msa0144780:CDS
ACAATGTACAATGGTCATAC+AGG 0.512140 1_4:+4305002 Msa0144780:CDS
AAGATCCATTCTCGTGGACG+AGG 0.512805 1_4:+4305095 Msa0144780:CDS
CCCGAATCTCAGCATAATCC+TGG 0.513356 1_4:+4296461 Msa0144780:CDS
TCCATTTCTTCAGGAATCAC+CGG 0.514281 1_4:+4302585 Msa0144780:intron
CTTAAGTACTCACTTGCTAC+TGG 0.514903 1_4:+4300441 Msa0144780:CDS
TATGATAAATTGGATGATGA+TGG 0.515681 1_4:+4303748 Msa0144780:CDS
GGCTACTTCTGTGCGCACTT+GGG 0.516303 1_4:+4300044 Msa0144780:CDS
AAGAGCAGCTTACAAGCATA+AGG 0.518433 1_4:-4305487 None:intergenic
TGGGCTATTATTTAGGCCTG+TGG 0.518601 1_4:+4301368 Msa0144780:intron
GGGATCATTATGGAAATAAG+AGG 0.519050 1_4:+4300086 Msa0144780:CDS
ACTTGGCGGACTCTTTAGAA+TGG 0.520767 1_4:+4300129 Msa0144780:CDS
CTAAGAGGGTCATTAAGAAA+GGG 0.522466 1_4:+4297599 Msa0144780:CDS
ATAAAAGACCAAAAGAAGAA+AGG 0.524792 1_4:+4305568 Msa0144780:CDS
ATTGAGAAAGCTGAGACGTC+GGG 0.524806 1_4:+4301672 Msa0144780:CDS
AAATAACCTCCTTGATCATA+CGG 0.525242 1_4:-4298462 None:intergenic
ATATTATCCTCAAAAGCCAC+TGG 0.525743 1_4:+4303220 Msa0144780:CDS
GTATGTTGATGTTTCTAAGA+GGG 0.526036 1_4:+4297585 Msa0144780:CDS
AATAAGAGGCTGGACCTGGC+AGG 0.528479 1_4:+4300100 Msa0144780:CDS
GTCATTTCCCAACACTTGAA+AGG 0.528559 1_4:-4305737 None:intergenic
GCTGAGGGGCGGTCACGTGA+TGG 0.528589 1_4:+4305146 Msa0144780:CDS
TGTGGGTGAAGTTCGGTCCA+TGG 0.531833 1_4:+4298584 Msa0144780:CDS
ATGTTCAAGGATATCCTTGT+CGG 0.531866 1_4:-4298889 None:intergenic
AGCAAAGCTTTACACAAATG+TGG 0.532243 1_4:+4304957 Msa0144780:CDS
TGTATGTTGATGTTTCTAAG+AGG 0.534291 1_4:+4297584 Msa0144780:CDS
CTGGCAGGTCCTTTACTTGG+CGG 0.536896 1_4:+4300115 Msa0144780:CDS
ATGGCATGATCTTGTGTCCA+AGG 0.537210 1_4:+4302618 Msa0144780:CDS
CGAAGGAATCAAGCTGTTGA+CGG 0.538937 1_4:-4296376 None:intergenic
CTTCCAAGAGCTAATGGCTA+TGG 0.539070 1_4:+4305507 Msa0144780:CDS
TCTCTCGGGCTAGTGCCAAA+GGG 0.540161 1_4:+4298652 Msa0144780:CDS
GGAGAGTGTCCGTATGATCA+AGG 0.540440 1_4:+4298453 Msa0144780:CDS
ACATTCATTCTTTGCAGCAA+AGG 0.540642 1_4:+4302491 Msa0144780:CDS
AATACGTATCAGTCTGCTAT+GGG 0.541188 1_4:+4303038 Msa0144780:CDS
AATTCGAAGTTCAAATTATG+CGG 0.541633 1_4:-4296217 None:intergenic
ATACTCTCCAACACCAACAT+GGG 0.542034 1_4:-4299907 None:intergenic
CGTGATTGCATGATTGCTCA+TGG 0.542766 1_4:+4305194 Msa0144780:CDS
CTGTTGACCACAAATGCTGA+TGG 0.543482 1_4:+4304220 Msa0144780:CDS
GCTATGGGAAAACAGGCAAT+GGG 0.544962 1_4:+4303053 Msa0144780:CDS
GGGAAGGTGGCTGCCCACAT+GGG 0.545068 1_4:+4304457 Msa0144780:CDS
CAGTAGTAGACACGGTCAGA+AGG 0.545602 1_4:+4304303 Msa0144780:CDS
CTTTGCGGATACTCAAATGA+TGG 0.546341 1_4:+4298923 Msa0144780:CDS
GCTGCCCACATGGGAAAAGA+AGG 0.546470 1_4:+4304466 Msa0144780:CDS
TCTTACAAGGCAACCTGCTG+AGG 0.547845 1_4:+4305130 Msa0144780:CDS
CAGATTCTTCACCAGTCCAC+AGG 0.550341 1_4:-4301384 None:intergenic
GTCATTAAGAAAGGGCATGA+TGG 0.550930 1_4:+4297607 Msa0144780:CDS
TATCACAAATGCTTCTTCCA+GGG 0.552036 1_4:-4298961 None:intergenic
AACAGGATCTTGTACAAGCA+AGG 0.552112 1_4:+4302809 Msa0144780:intron
ATACCATATTTACCTGATTG+TGG 0.553223 1_4:-4302930 None:intergenic
CACCCAAAATCAGTGATGGA+TGG 0.554350 1_4:-4302879 None:intergenic
GTGTGATAAAGTGGAAGCAT+AGG 0.555572 1_4:-4300628 None:intergenic
TACCATTCGAAACTGGTAGT+TGG 0.555979 1_4:-4303087 None:intergenic
ATGTCTATGTCTTTAAGAAG+AGG 0.558200 1_4:+4298541 Msa0144780:CDS
AACTGTAATGTATACCATCA+AGG 0.558598 1_4:-4301408 None:intergenic
TTGATGGTATACATTACAGT+TGG 0.558896 1_4:+4301410 Msa0144780:CDS
GTAGCTTGGGGAATCACCGC+AGG 0.559718 1_4:-4301586 None:intergenic
CATTATTAATGGCAGTGAGA+AGG 0.561304 1_4:+4298485 Msa0144780:CDS
ACGAAAATGAAGATGCTCCA+TGG 0.561361 1_4:-4303255 None:intergenic
TCATCGCGACCCTGATATGT+TGG 0.561873 1_4:+4301642 Msa0144780:CDS
TGGAGCCGCTCACTTCCTAA+AGG 0.562196 1_4:+4305214 Msa0144780:CDS
AATACTCTCCAACACCAACA+TGG 0.562396 1_4:-4299908 None:intergenic
CACGGTCAGAAGGGGACTGT+TGG 0.562916 1_4:+4304313 Msa0144780:CDS
TCTGTTCGAATACCACAGAT+TGG 0.563843 1_4:+4304271 Msa0144780:CDS
AAAGTTGACTAGAGATGTCA+GGG 0.564452 1_4:+4300258 Msa0144780:CDS
GTGGATTGACAATAATATCA+GGG 0.564760 1_4:-4304384 None:intergenic
TACTTCTGTGCGCACTTGGG+CGG 0.565950 1_4:+4300047 Msa0144780:CDS
TATTCATTGTGGATAAACAA+AGG 0.566213 1_4:+4302449 Msa0144780:CDS
TTTGAGTAAGCCAATGATGA+CGG 0.566626 1_4:+4297489 Msa0144780:CDS
AGGTCTTCGATTTGGAGAGA+TGG 0.567077 1_4:+4305169 Msa0144780:CDS
ATTCGACCAGCAAATGGAAG+AGG 0.569777 1_4:+4296277 Msa0144780:CDS
CCTAATCTGCAGGTATGCTA+AGG 0.570029 1_4:+4299860 Msa0144780:intron
CTCTTCCTGAGATAGAGGAG+TGG 0.573182 1_4:-4303912 None:intergenic
ATACACAAGAAGACATGCCC+TGG 0.575210 1_4:+4304344 Msa0144780:CDS
TCATTATGGAAATAAGAGGC+TGG 0.580811 1_4:+4300090 Msa0144780:CDS
CGAGTGTATCATGGGGAAGG+TGG 0.580823 1_4:+4304444 Msa0144780:CDS
TCACTTGCTACTGGTAATTG+GGG 0.581100 1_4:+4300450 Msa0144780:CDS
GAGGGGCGGTCACGTGATGG+AGG 0.582017 1_4:+4305149 Msa0144780:CDS
CGCCAAGTAAAGGACCTGCC+AGG 0.582885 1_4:-4300114 None:intergenic
AGTAGTAGACACGGTCAGAA+GGG 0.585599 1_4:+4304304 Msa0144780:CDS
ATGCGCACAAACATAGTGCT+AGG 0.586320 1_4:-4298627 None:intergenic
GAGGTAGTGATGAGGCTACT+GGG 0.588391 1_4:-4305849 None:intergenic
GCAAAGCTTTACACAAATGT+GGG 0.589460 1_4:+4304958 Msa0144780:CDS
GTACTTAAGTCCACTTGTGA+TGG 0.591849 1_4:-4300427 None:intergenic
TTCATCAACTATCTCCTGCA+TGG 0.592493 1_4:-4296417 None:intergenic
ATCCACAGCGTTCACACACG+TGG 0.592592 1_4:-4305271 None:intergenic
TTCAACCTTTGGTAATAGGT+AGG 0.593041 1_4:-4305056 None:intergenic
TTGGGCCTACCTATTACCAA+AGG 0.594097 1_4:+4305051 Msa0144780:CDS
ATATGCGCAGTTCTTTAAGA+CGG 0.594553 1_4:-4302396 None:intergenic
TCCACAGATATATCATTCAC+CGG 0.598759 1_4:+4300023 Msa0144780:intron
GACAGCTGCATAATTCACAA+TGG 0.600518 1_4:+4301226 Msa0144780:CDS
ACAATGGGGAATGATGTGTC+CGG 0.600917 1_4:+4301242 Msa0144780:CDS
CTTACAAGGCAACCTGCTGA+GGG 0.601495 1_4:+4305131 Msa0144780:CDS
AAGGAGATGCTTCCCCATGT+TGG 0.602787 1_4:+4299894 Msa0144780:CDS
ATTCATCCAGAACACCATGC+AGG 0.603313 1_4:+4296403 Msa0144780:CDS
ACTGCTTCCTCTCGTGAACG+TGG 0.603906 1_4:+4305640 Msa0144780:three_prime_UTR
TGACCAATTGTCATTCGAGA+AGG 0.604159 1_4:-4304415 None:intergenic
GAAAGGGCATGATGGTGAAG+AGG 0.604192 1_4:+4297615 Msa0144780:CDS
ATGTCCTAACCAACATATCA+GGG 0.604790 1_4:-4301651 None:intergenic
AGAATATATCGACACAGAAG+AGG 0.605449 1_4:+4302648 Msa0144780:CDS
ATACGGACACTCTCCAAGCT+CGG 0.606508 1_4:-4298445 None:intergenic
ATTGGGGTTTGTCGCCGACA+AGG 0.606610 1_4:+4298875 Msa0144780:CDS
TTAGAAACATCAACATACAA+AGG 0.606950 1_4:-4297580 None:intergenic
CCTCAGCGAAATCGGACTGA+TGG 0.607135 1_4:-4296484 None:intergenic
AGTCAACATGGAATAAAGAC+TGG 0.607208 1_4:-4305620 None:intergenic
TGGCATGATCTTGTGTCCAA+GGG 0.607611 1_4:+4302619 Msa0144780:CDS
CCAATGATGACGGAATCTGA+TGG 0.608626 1_4:+4297499 Msa0144780:CDS
ACGAGAGGAAGCAGTCAACA+TGG 0.608706 1_4:-4305632 None:intergenic
GCGGAGGGCTGAAGATGATA+GGG 0.609839 1_4:+4300066 Msa0144780:CDS
TGATGTTAATACTGAAGTTG+GGG 0.611461 1_4:+4302360 Msa0144780:CDS
CTGAATTTGTCACCAATCTG+TGG 0.613238 1_4:-4304283 None:intergenic
AATCACCGGAAGATGGTGGA+TGG 0.615234 1_4:+4302599 Msa0144780:CDS
ACAAATGCTTCTTCCAGGGA+AGG 0.617068 1_4:-4298957 None:intergenic
TATCGAGTGTATCATGGGGA+AGG 0.618510 1_4:+4304441 Msa0144780:CDS
ATAATATAAAACATACGCCA+AGG 0.620175 1_4:-4303204 None:intergenic
TGCCTTGTAAGAATCTGCAC+AGG 0.620516 1_4:-4305119 None:intergenic
GTGGTCAGGAAATGGTATGA+TGG 0.622245 1_4:-4302911 None:intergenic
TCTTTCCTTTAGGAAGTGAG+CGG 0.624165 1_4:-4305219 None:intergenic
GTAGTAGACACGGTCAGAAG+GGG 0.624190 1_4:+4304305 Msa0144780:CDS
GGGTCGAATTTCGATATCAG+CGG 0.625955 1_4:-4296441 None:intergenic
TGTTGACCACAAATGCTGAT+GGG 0.626117 1_4:+4304221 Msa0144780:CDS
CAGGAATCACCGGAAGATGG+TGG 0.626286 1_4:+4302595 Msa0144780:intron
GGCCTGTGCAGATTCTTACA+AGG 0.626814 1_4:+4305117 Msa0144780:CDS
AATTCTCCTATAGGACGTGA+AGG 0.626912 1_4:+4300663 Msa0144780:CDS
ATAACATGAAATGGCCACAA+TGG 0.627397 1_4:-4303385 None:intergenic
ACTATATCAGAATTCAGAGA+AGG 0.627949 1_4:+4298416 Msa0144780:CDS
CATACACCCAAAATCAGTGA+TGG 0.628250 1_4:-4302883 None:intergenic
ATTCGAGAAGGTATAGCATG+TGG 0.628340 1_4:-4304403 None:intergenic
ATCAACTGTAGGTGTAACCA+AGG 0.629048 1_4:+4299750 Msa0144780:CDS
ACTGGTCACTACGAGAGCCA+TGG 0.630859 1_4:+4303238 Msa0144780:CDS
ATGGCTCTCGTAGTGACCAG+TGG 0.632635 1_4:-4303236 None:intergenic
TACCAACTACCAGTTTCGAA+TGG 0.633775 1_4:+4303085 Msa0144780:CDS
AGCAAACAGACCTATATGAA+CGG 0.634285 1_4:-4303485 None:intergenic
CCTAACAAGTATGCTTATGT+GGG 0.634295 1_4:+4298567 Msa0144780:CDS
GTGATGCCTTCTACAGTCCA+GGG 0.636479 1_4:-4304361 None:intergenic
CAAGGCAACCTGCTGAGGGG+CGG 0.636674 1_4:+4305135 Msa0144780:CDS
GTTGAGATTCGTGAAAGTAA+GGG 0.638402 1_4:+4304243 Msa0144780:CDS
CTCTCGGGCTAGTGCCAAAG+GGG 0.643628 1_4:+4298653 Msa0144780:CDS
GTTCTGGATGAATTCATCGA+AGG 0.644808 1_4:-4296393 None:intergenic
TATGTAGGAAATTTCTCCTG+CGG 0.653804 1_4:+4301570 Msa0144780:intron
CAGATGCGATATAGGAAGCG+AGG 0.657139 1_4:-4305868 None:intergenic
CTATCTCAGGAAGAGCAACA+AGG 0.657616 1_4:+4303920 Msa0144780:CDS
CAAGTGCGCACAGAAGTAGC+CGG 0.657947 1_4:-4300042 None:intergenic
CAAAATTTACAATTCCAGCA+GGG 0.661317 1_4:-4303283 None:intergenic
GATGACAAGATCCATTCTCG+TGG 0.663053 1_4:+4305089 Msa0144780:CDS
ATAGAGACCGAAAGAAGCCA+CGG 0.663349 1_4:-4303458 None:intergenic
GTGTGATCCACGTTCACGAG+AGG 0.663833 1_4:-4305647 None:intergenic
TAGGAAGCGAGGTAGTGATG+AGG 0.663942 1_4:-4305857 None:intergenic
GACAAATTCAGTAGTAGACA+CGG 0.664921 1_4:+4304295 Msa0144780:CDS
TTATTGTGTTTCGGGCATTG+GGG 0.667801 1_4:+4298859 Msa0144780:CDS
AAATGTGGGTACCAAATGCG+TGG 0.670341 1_4:+4304972 Msa0144780:CDS
GAACGTGGATCACACACACA+TGG 0.670875 1_4:+4305655 Msa0144780:three_prime_UTR
TGTACAATGGTCATACAGGA+AGG 0.673197 1_4:+4305006 Msa0144780:CDS
TGGATTGACAATAATATCAG+GGG 0.673711 1_4:-4304383 None:intergenic
TTTGGTAATAGGTAGGCCCA+AGG 0.674216 1_4:-4305049 None:intergenic
AATGGAAGAGGAAGACGATG+AGG 0.677093 1_4:+4296289 Msa0144780:CDS
CCATCAGTCCGATTTCGCTG+AGG 0.678918 1_4:+4296484 Msa0144780:CDS
GCAGACTGATACGTATTACG+AGG 0.679371 1_4:-4303032 None:intergenic
CAGACTGATACGTATTACGA+GGG 0.679597 1_4:-4303031 None:intergenic
TGTGCCATAGAATGCCATTG+TGG 0.679926 1_4:+4303371 Msa0144780:intron
AGATCCATTCTCGTGGACGA+GGG 0.680250 1_4:+4305096 Msa0144780:CDS
TACTCTCCAACACCAACATG+GGG 0.682957 1_4:-4299906 None:intergenic
GGGCACAAGAGTGTCTGGTG+AGG 0.687347 1_4:+4303871 Msa0144780:intron
CGCACAAACATAGTGCTAGG+TGG 0.691615 1_4:-4298624 None:intergenic
GCAGTGTGTTGATAATGGGA+AGG 0.696609 1_4:+4300371 Msa0144780:intron
CACTTGCTACTGGTAATTGG+GGG 0.696854 1_4:+4300451 Msa0144780:CDS
AGCTTATCGAGTGTATCATG+GGG 0.704452 1_4:+4304437 Msa0144780:CDS
TGTCCGGCAGAAACACCAGA+AGG 0.711936 1_4:+4301258 Msa0144780:CDS
AACCAATCATCAATAGACCG+TGG 0.713532 1_4:+4303441 Msa0144780:CDS
GCCGGATAGAGCCAACACCA+TGG 0.715047 1_4:+4303636 Msa0144780:CDS
TTACAAGGCAACCTGCTGAG+GGG 0.720916 1_4:+4305132 Msa0144780:CDS
CAGCTGCATAATTCACAATG+GGG 0.732440 1_4:+4301228 Msa0144780:CDS
AGACTGATACGTATTACGAG+GGG 0.743924 1_4:-4303030 None:intergenic
GTCCACGTGTGTGAACGCTG+TGG 0.744978 1_4:+4305269 Msa0144780:CDS
GAGTGTCCGTATGATCAAGG+AGG 0.751164 1_4:+4298456 Msa0144780:CDS
AAGTTGACTAGAGATGTCAG+GGG 0.803386 1_4:+4300259 Msa0144780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAACCTATTTTATTATTA+CGG + chr1_4:4300995-4301014 Msa0144780:intron 10.0%
!! TTAAAATAGAATGTATTTAT+TGG + chr1_4:4301918-4301937 Msa0144780:intron 10.0%
!! ATTATCAATATAATAACAAA+AGG - chr1_4:4303326-4303345 None:intergenic 10.0%
!!! TATTATTAGATCTTATTTAA+TGG + chr1_4:4304064-4304083 Msa0144780:intron 10.0%
!!! ATTATTAGATCTTATTTAAT+GGG + chr1_4:4304065-4304084 Msa0144780:intron 10.0%
!! AGTTACAGATTATAAAAAAA+GGG - chr1_4:4297381-4297400 None:intergenic 15.0%
!! TAGTTACAGATTATAAAAAA+AGG - chr1_4:4297382-4297401 None:intergenic 15.0%
!!! TTTTTATAATCTGTAACTAA+CGG + chr1_4:4297383-4297402 Msa0144780:intron 15.0%
!! TAGTTTAGTATATTAGTATT+TGG + chr1_4:4297975-4297994 Msa0144780:intron 15.0%
!!! TTTTAAGTTATTTTATGATG+TGG + chr1_4:4298293-4298312 Msa0144780:intron 15.0%
!!! TTGTTATTATTCTACTTATT+TGG + chr1_4:4300168-4300187 Msa0144780:intron 15.0%
!!! GTAACTTTGATTTTTTTAAT+TGG - chr1_4:4300844-4300863 None:intergenic 15.0%
!! AAAAAATCAAAGTTACTTAA+TGG + chr1_4:4300848-4300867 Msa0144780:intron 15.0%
!!! TTATTATTTTTTGAGCAATT+TGG - chr1_4:4300889-4300908 None:intergenic 15.0%
!! AATAACCGTAATAATAAAAT+AGG - chr1_4:4301003-4301022 None:intergenic 15.0%
!! TATATAACAAGTAGTAATAT+AGG - chr1_4:4301312-4301331 None:intergenic 15.0%
!!! ACAAATTATTACTTTTATGA+AGG - chr1_4:4301507-4301526 None:intergenic 15.0%
!! TATTAAGTATTCTATATTTC+TGG + chr1_4:4301985-4302004 Msa0144780:intron 15.0%
!! AACTATTATTACAAGTTAAA+TGG + chr1_4:4302109-4302128 Msa0144780:intron 15.0%
!!! TATCATATTACATTTTTAAG+AGG + chr1_4:4302251-4302270 Msa0144780:intron 15.0%
!! TAAATAATTTCAAACAATGA+TGG - chr1_4:4302280-4302299 None:intergenic 15.0%
!!! TTATTAGATCTTATTTAATG+GGG + chr1_4:4304066-4304085 Msa0144780:intron 15.0%
!! TATTGTTCATTGTATTTATA+CGG - chr1_4:4306020-4306039 None:intergenic 15.0%
!!! TAATGAGTTAATAGTTTTTT+TGG + chr1_4:4306084-4306103 Msa0144780:three_prime_UTR 15.0%
!! TTCAATTAGATGATTAAATC+TGG + chr1_4:4296542-4296561 Msa0144780:intron 20.0%
!!! TTTCAATTTTCAATATAACG+TGG + chr1_4:4296579-4296598 Msa0144780:intron 20.0%
!! GATACTTCAAAAAAATATAG+CGG + chr1_4:4296689-4296708 Msa0144780:intron 20.0%
!!! TTTTGAAAATCTGTAACTAA+AGG + chr1_4:4297164-4297183 Msa0144780:intron 20.0%
!! TCAATGAAATAATCACTTAT+AGG - chr1_4:4297199-4297218 None:intergenic 20.0%
!!! TTCTTTAGAAAATCATTTTG+TGG + chr1_4:4297270-4297289 Msa0144780:intron 20.0%
!!! TTTTATAATCTGTAACTAAC+GGG + chr1_4:4297384-4297403 Msa0144780:intron 20.0%
!!! TGTTGATGTTAATATGATTT+TGG + chr1_4:4297422-4297441 Msa0144780:intron 20.0%
!! TAAACTACAACTATAACAAT+TGG - chr1_4:4297962-4297981 None:intergenic 20.0%
!! TAACAACAAAACCATTATTT+AGG - chr1_4:4298360-4298379 None:intergenic 20.0%
!!! ATAATGGTTTTGTTGTTATT+AGG + chr1_4:4298362-4298381 Msa0144780:intron 20.0%
!! TATTATTTATACTCGAATGA+AGG + chr1_4:4299153-4299172 Msa0144780:intron 20.0%
!! AGAATTTAAATTAGTACATG+TGG - chr1_4:4299474-4299493 None:intergenic 20.0%
!!! ACTAAAAAAGCATACTATTT+TGG + chr1_4:4299936-4299955 Msa0144780:CDS 20.0%
!!! CTAAAAAAGCATACTATTTT+GGG + chr1_4:4299937-4299956 Msa0144780:CDS 20.0%
!!! GATTTTTTTAATTGGTAAAC+CGG - chr1_4:4300836-4300855 None:intergenic 20.0%
!!! AATTTCTAGTAATGTAATAC+TGG - chr1_4:4300912-4300931 None:intergenic 20.0%
!! AGTATTACATTACTAGAAAT+TGG + chr1_4:4300911-4300930 Msa0144780:intron 20.0%
!! TTTACAATATCAATTCAATC+TGG + chr1_4:4301023-4301042 Msa0144780:intron 20.0%
!!! CCTTATTAAGATAATCTTTT+GGG + chr1_4:4302054-4302073 Msa0144780:intron 20.0%
!! TGCATTTATGTACTAATAAA+GGG - chr1_4:4302742-4302761 None:intergenic 20.0%
!! TTGCATTTATGTACTAATAA+AGG - chr1_4:4302743-4302762 None:intergenic 20.0%
!! TGATTATGAATGTATTTAAC+AGG + chr1_4:4302792-4302811 Msa0144780:intron 20.0%
!!! CAAAAGGATTTTAATAAAGA+AGG - chr1_4:4303310-4303329 None:intergenic 20.0%
!!! AGTGAATTTTCAATTAATTC+GGG - chr1_4:4303512-4303531 None:intergenic 20.0%
!!! CAGTGAATTTTCAATTAATT+CGG - chr1_4:4303513-4303532 None:intergenic 20.0%
!!! TTACATATTTCCTATTTTGT+AGG + chr1_4:4304195-4304214 Msa0144780:intron 20.0%
!! AACAACATACAAAATACAAT+AGG - chr1_4:4304616-4304635 None:intergenic 20.0%
!! TACCTATTTAGAAAATATCA+TGG + chr1_4:4304848-4304867 Msa0144780:intron 20.0%
!!! TACCATGATATTTTCTAAAT+AGG - chr1_4:4304853-4304872 None:intergenic 20.0%
!! AAAAATCCTTGACATATAAA+TGG - chr1_4:4305788-4305807 None:intergenic 20.0%
!!! TTGTACTAAAAAAGTATATC+CGG - chr1_4:4305997-4306016 None:intergenic 20.0%
!! AATACAATGAACAATACATA+TGG + chr1_4:4306024-4306043 Msa0144780:three_prime_UTR 20.0%
!!! TATTAACTCATTATTTTGCA+TGG - chr1_4:4306077-4306096 None:intergenic 20.0%
! AATTCGAAGTTCAAATTATG+CGG - chr1_4:4296220-4296239 None:intergenic 25.0%
! GAATTTGAACAAAATGATGA+TGG + chr1_4:4296235-4296254 Msa0144780:exon 25.0%
!!! TCTGCTTATTTTGAAGAAAA+AGG + chr1_4:4296347-4296366 Msa0144780:CDS 25.0%
!!! TTACAATGAGAAGTGTTTTT+AGG + chr1_4:4296631-4296650 Msa0144780:intron 25.0%
!!! TACAATGAGAAGTGTTTTTA+GGG + chr1_4:4296632-4296651 Msa0144780:intron 25.0%
!!! TTTTTAGGGTTTGTTTGTTA+CGG + chr1_4:4296646-4296665 Msa0144780:intron 25.0%
! GGATTGTAAAATAAGTGATT+TGG + chr1_4:4296667-4296686 Msa0144780:intron 25.0%
!!! TTTTGAAGTGATTTTCATTC+TGG - chr1_4:4296773-4296792 None:intergenic 25.0%
! AAGATACTAAGTGTTATGTT+AGG + chr1_4:4296818-4296837 Msa0144780:intron 25.0%
!!! AATTTTGACCCATTTAAAAG+TGG - chr1_4:4296846-4296865 None:intergenic 25.0%
!!! TGGTGACAATAATTGATTTT+GGG - chr1_4:4297082-4297101 None:intergenic 25.0%
! ACGATTTATAAGATAAGCTT+CGG + chr1_4:4297457-4297476 Msa0144780:CDS 25.0%
! TTAGAAACATCAACATACAA+AGG - chr1_4:4297583-4297602 None:intergenic 25.0%
! TAAGCATGTATCTTAGAATT+CGG - chr1_4:4297912-4297931 None:intergenic 25.0%
!!! TTCTAAGATACATGCTTAAA+AGG + chr1_4:4297914-4297933 Msa0144780:intron 25.0%
!! TCTAAGATACATGCTTAAAA+GGG + chr1_4:4297915-4297934 Msa0144780:intron 25.0%
! AACTGAAAAAGACTTCTTAT+AGG - chr1_4:4298028-4298047 None:intergenic 25.0%
! ATAAGCTTAAGCTTCTATTT+AGG + chr1_4:4298063-4298082 Msa0144780:intron 25.0%
! AGTAAACTGAAAATGACAAA+AGG - chr1_4:4298090-4298109 None:intergenic 25.0%
! TGTTACTGAATAAATGTGTT+AGG + chr1_4:4298179-4298198 Msa0144780:intron 25.0%
! GTTACTGAATAAATGTGTTA+GGG + chr1_4:4298180-4298199 Msa0144780:intron 25.0%
!!! TAAGTTATTTTATGATGTGG+TGG + chr1_4:4298296-4298315 Msa0144780:intron 25.0%
!! GGAGGTTATTTCATTATTAA+TGG + chr1_4:4298474-4298493 Msa0144780:CDS 25.0%
! TTCCTATCATTATTGTGTTT+CGG + chr1_4:4298850-4298869 Msa0144780:CDS 25.0%
! ATTTGTGATACAAAATCAAC+AGG + chr1_4:4298974-4298993 Msa0144780:CDS 25.0%
!!! TTTTTTGCTTACAGTCAAAA+TGG + chr1_4:4299019-4299038 Msa0144780:intron 25.0%
!! TGAACAGTCTGAAATATATT+TGG - chr1_4:4299100-4299119 None:intergenic 25.0%
!! AGAGAGCTTTTAAACTTATT+AGG + chr1_4:4299338-4299357 Msa0144780:intron 25.0%
!! GAGAGCTTTTAAACTTATTA+GGG + chr1_4:4299339-4299358 Msa0144780:intron 25.0%
! CAAAATCATATGACACAATA+TGG - chr1_4:4299552-4299571 None:intergenic 25.0%
! TTGAATCATCTAAGCTTATA+TGG - chr1_4:4299592-4299611 None:intergenic 25.0%
! AAAATCAAAACCGTTCTTTA+GGG + chr1_4:4299610-4299629 Msa0144780:intron 25.0%
!! TGAAGTATCAAGAAAATTGT+GGG - chr1_4:4299654-4299673 None:intergenic 25.0%
!! TTGAAGTATCAAGAAAATTG+TGG - chr1_4:4299655-4299674 None:intergenic 25.0%
! TTATTTATCAATTTCACTCC+AGG + chr1_4:4299699-4299718 Msa0144780:intron 25.0%
! CTTGATTATATTGGAAAAAG+AGG + chr1_4:4299727-4299746 Msa0144780:CDS 25.0%
! ATACTTGAAATTCAAGTAAC+AGG - chr1_4:4299983-4300002 None:intergenic 25.0%
!!! ACTTATTTGGTCTTGTTATT+TGG + chr1_4:4300181-4300200 Msa0144780:intron 25.0%
!! TCTTTCTATTTCTTAATTCC+TGG + chr1_4:4300206-4300225 Msa0144780:intron 25.0%
! ATTATGAATAAATTGGCACT+AGG + chr1_4:4300765-4300784 Msa0144780:intron 25.0%
! TTATGAATAAATTGGCACTA+GGG + chr1_4:4300766-4300785 Msa0144780:intron 25.0%
!!! CAAAACCATTTTTTACAAAC+CGG + chr1_4:4300814-4300833 Msa0144780:intron 25.0%
! ACTAGAAATTGGTTATAACT+AGG + chr1_4:4300922-4300941 Msa0144780:intron 25.0%
! CTAGAAATTGGTTATAACTA+GGG + chr1_4:4300923-4300942 Msa0144780:intron 25.0%
! TAGAAATTGGTTATAACTAG+GGG + chr1_4:4300924-4300943 Msa0144780:intron 25.0%
! TTGATACAATCAATGGAATA+TGG + chr1_4:4301096-4301115 Msa0144780:intron 25.0%
!!! TGTCTAAGTTGTATTTTTGT+TGG + chr1_4:4301166-4301185 Msa0144780:intron 25.0%
!! TTTTACTATTTCAGGAAAGT+TGG + chr1_4:4301194-4301213 Msa0144780:intron 25.0%
!! AATTTGTTTCTTTCTGTGTA+TGG + chr1_4:4301520-4301539 Msa0144780:intron 25.0%
!! TACGAAAATTTTTGTAGCTT+GGG - chr1_4:4301602-4301621 None:intergenic 25.0%
!! TTACGAAAATTTTTGTAGCT+TGG - chr1_4:4301603-4301622 None:intergenic 25.0%
!! GCTACAAAAATTTTCGTAAA+TGG + chr1_4:4301604-4301623 Msa0144780:CDS 25.0%
!! ATGTCGTTCTTTTATAAGAA+GGG - chr1_4:4301847-4301866 None:intergenic 25.0%
! TTCTTATAAAAGAACGACAT+GGG + chr1_4:4301847-4301866 Msa0144780:intron 25.0%
!!! GCCTTATTAAGATAATCTTT+TGG + chr1_4:4302053-4302072 Msa0144780:intron 25.0%
! CCCAAAAGATTATCTTAATA+AGG - chr1_4:4302057-4302076 None:intergenic 25.0%
!! TGATAATTCTTCTACCTTTT+TGG - chr1_4:4302153-4302172 None:intergenic 25.0%
!! GCTTTTATAAAAATGAGTCT+AGG - chr1_4:4302228-4302247 None:intergenic 25.0%
! TTGATGTTAATACTGAAGTT+GGG + chr1_4:4302359-4302378 Msa0144780:CDS 25.0%
! TGTTTATCCACAATGAATAA+AGG - chr1_4:4302448-4302467 None:intergenic 25.0%
! TATTCATTGTGGATAAACAA+AGG + chr1_4:4302449-4302468 Msa0144780:CDS 25.0%
! CAGTACTATAATTCTAGATT+TGG + chr1_4:4302705-4302724 Msa0144780:intron 25.0%
!! ATCAGGTAAATATGGTATTT+TGG + chr1_4:4302935-4302954 Msa0144780:intron 25.0%
!! TCAGGTAAATATGGTATTTT+GGG + chr1_4:4302936-4302955 Msa0144780:intron 25.0%
! ATAATATAAAACATACGCCA+AGG - chr1_4:4303207-4303226 None:intergenic 25.0%
! ATAACCAGAATAACATGAAA+TGG - chr1_4:4303397-4303416 None:intergenic 25.0%
!! GTGAATTTTCAATTAATTCG+GGG - chr1_4:4303511-4303530 None:intergenic 25.0%
! AGAGATGAAGAGAAAAAAAT+GGG + chr1_4:4303586-4303605 Msa0144780:intron 25.0%
!!! TATAAAAAGTGTTGTTTTGC+AGG + chr1_4:4303708-4303727 Msa0144780:intron 25.0%
!!! ATAAAAAGTGTTGTTTTGCA+GGG + chr1_4:4303709-4303728 Msa0144780:intron 25.0%
! TATGATAAATTGGATGATGA+TGG + chr1_4:4303748-4303767 Msa0144780:CDS 25.0%
! CAATTTATCACTATGAAACA+GGG + chr1_4:4303851-4303870 Msa0144780:intron 25.0%
!! GTTTTGCATTTAAAAAACGT+CGG + chr1_4:4304703-4304722 Msa0144780:intron 25.0%
! ATAGCACATTGTTAAACTTT+GGG - chr1_4:4304729-4304748 None:intergenic 25.0%
! AATAGCACATTGTTAAACTT+TGG - chr1_4:4304730-4304749 None:intergenic 25.0%
!! ATGGTAGAATTTTTGCTTTA+TGG + chr1_4:4304867-4304886 Msa0144780:intron 25.0%
!! ATTTTAAACACAAGCTAGAA+AGG - chr1_4:4304899-4304918 None:intergenic 25.0%
! ATAAAAGACCAAAAGAAGAA+AGG + chr1_4:4305568-4305587 Msa0144780:CDS 25.0%
!! GTTTATTTCTTGAACTAGAA+AGG - chr1_4:4305811-4305830 None:intergenic 25.0%
! ATATTGATCGAAAAATTAGC+TGG + chr1_4:4305912-4305931 Msa0144780:three_prime_UTR 25.0%
! TATTGATCGAAAAATTAGCT+GGG + chr1_4:4305913-4305932 Msa0144780:three_prime_UTR 25.0%
!!! TAATAGTTTTTTTGGTCGAA+TGG + chr1_4:4306092-4306111 Msa0144780:three_prime_UTR 25.0%
!! AGTGATTTGATTTTCGAAAG+AGG - chr1_4:4296122-4296141 None:intergenic 30.0%
!! GAACAAAATGATGATGGATT+TGG + chr1_4:4296241-4296260 Msa0144780:exon 30.0%
! AGCGGTTAATTTTTGTAGTA+AGG + chr1_4:4296707-4296726 Msa0144780:intron 30.0%
!! TGTTAGGTTCCACTTTTAAA+TGG + chr1_4:4296834-4296853 Msa0144780:intron 30.0%
!! GTTAGGTTCCACTTTTAAAT+GGG + chr1_4:4296835-4296854 Msa0144780:intron 30.0%
! AAATGGGTCAAAATTGATTC+TGG + chr1_4:4296851-4296870 Msa0144780:intron 30.0%
AATTCACTCTACTTGAAGTT+AGG + chr1_4:4296917-4296936 Msa0144780:intron 30.0%
! GTGAGTTGAACTATCAATTT+GGG - chr1_4:4296978-4296997 None:intergenic 30.0%
! AGTGAGTTGAACTATCAATT+TGG - chr1_4:4296979-4296998 None:intergenic 30.0%
! AAGGTAAAGTGATTTGTGTT+TGG - chr1_4:4297017-4297036 None:intergenic 30.0%
!! GTGGTGACAATAATTGATTT+TGG - chr1_4:4297083-4297102 None:intergenic 30.0%
TTAGTGTATGTTTGGTTATG+TGG - chr1_4:4297102-4297121 None:intergenic 30.0%
!!! AGCAGTTTTTAGTGTATGTT+TGG - chr1_4:4297110-4297129 None:intergenic 30.0%
TACACTAAAAACTGCTTCAA+AGG + chr1_4:4297114-4297133 Msa0144780:intron 30.0%
TTAACATCAACATCACATTC+AGG - chr1_4:4297414-4297433 None:intergenic 30.0%
! TGTATGTTGATGTTTCTAAG+AGG + chr1_4:4297584-4297603 Msa0144780:CDS 30.0%
! GTATGTTGATGTTTCTAAGA+GGG + chr1_4:4297585-4297604 Msa0144780:CDS 30.0%
! GATTTCACCAAAGTTTTCAT+TGG + chr1_4:4297652-4297671 Msa0144780:CDS 30.0%
AATACTAGAATTGAGAGGAA+GGG - chr1_4:4297686-4297705 None:intergenic 30.0%
TGTAGAATACTAGAATTGAG+AGG - chr1_4:4297691-4297710 None:intergenic 30.0%
TACAGATTCTGATTTCATTG+CGG + chr1_4:4297707-4297726 Msa0144780:intron 30.0%
! TACATGCTTAAAAGGGTTTT+TGG + chr1_4:4297922-4297941 Msa0144780:intron 30.0%
TAGAAGCTTAAGCTTATCAT+TGG - chr1_4:4298060-4298079 None:intergenic 30.0%
AACACCACAAACAACAAAAA+AGG - chr1_4:4298135-4298154 None:intergenic 30.0%
! ATGTTATTCTGACTTGAAGA+AGG - chr1_4:4298206-4298225 None:intergenic 30.0%
! ATGTGGTGGTGAATTATAAT+TGG + chr1_4:4298310-4298329 Msa0144780:intron 30.0%
GTGGTGAATTATAATTGGAT+CGG + chr1_4:4298315-4298334 Msa0144780:intron 30.0%
! AACCATTATTTAGGTTACTC+AGG - chr1_4:4298351-4298370 None:intergenic 30.0%
ATTAGGTTCCTATTATGCTT+CGG + chr1_4:4298379-4298398 Msa0144780:intron 30.0%
ACTATATCAGAATTCAGAGA+AGG + chr1_4:4298416-4298435 Msa0144780:CDS 30.0%
AAATAACCTCCTTGATCATA+CGG - chr1_4:4298465-4298484 None:intergenic 30.0%
CTTAAAGACATAGACATGAT+TGG - chr1_4:4298538-4298557 None:intergenic 30.0%
! ATGTCTATGTCTTTAAGAAG+AGG + chr1_4:4298541-4298560 Msa0144780:CDS 30.0%
! TATGCATTTTTATTCCTACC+AGG + chr1_4:4298776-4298795 Msa0144780:intron 30.0%
! ATGCATTTTTATTCCTACCA+GGG + chr1_4:4298777-4298796 Msa0144780:intron 30.0%
TCCTATCATTATTGTGTTTC+GGG + chr1_4:4298851-4298870 Msa0144780:CDS 30.0%
AGTCATAGCATATATGTTCA+AGG - chr1_4:4298905-4298924 None:intergenic 30.0%
ACATATATGCTATGACTTTG+CGG + chr1_4:4298908-4298927 Msa0144780:CDS 30.0%
AACAGCTCTTATAAGGTTAT+AGG + chr1_4:4299245-4299264 Msa0144780:intron 30.0%
! CTTTTGCACAAGTACTTATA+GGG - chr1_4:4299417-4299436 None:intergenic 30.0%
! TCTTTTGCACAAGTACTTAT+AGG - chr1_4:4299418-4299437 None:intergenic 30.0%
CAAAATCAAAACCGTTCTTT+AGG + chr1_4:4299609-4299628 Msa0144780:intron 30.0%
TGCAATATTTCCCTAAAGAA+CGG - chr1_4:4299623-4299642 None:intergenic 30.0%
ACTTCAATGTCTTCTGTATA+TGG + chr1_4:4299668-4299687 Msa0144780:intron 30.0%
! TCACTTAATTCTCTTTTCCT+TGG - chr1_4:4299770-4299789 None:intergenic 30.0%
TGTAACAGTTGCTTCATAAT+GGG - chr1_4:4299833-4299852 None:intergenic 30.0%
ATAGCTGCATCACAAATTAT+AGG - chr1_4:4300234-4300253 None:intergenic 30.0%
! TCTGTCTTCTAAAGATGAAA+TGG + chr1_4:4300552-4300571 Msa0144780:intron 30.0%
TATGAATAAATTGGCACTAG+GGG + chr1_4:4300767-4300786 Msa0144780:intron 30.0%
! CGGTTTGTAAAAAATGGTTT+TGG - chr1_4:4300816-4300835 None:intergenic 30.0%
!! GTAAACCGGTTTGTAAAAAA+TGG - chr1_4:4300822-4300841 None:intergenic 30.0%
!!! TTTTTTGAGCAATTTGGTTG+TGG - chr1_4:4300883-4300902 None:intergenic 30.0%
! AATTCAATCTGGTTCAAAAC+CGG + chr1_4:4301034-4301053 Msa0144780:intron 30.0%
! TCCATTGATTGTATCAACTA+CGG - chr1_4:4301093-4301112 None:intergenic 30.0%
GGAATATGGTAATATGTTCT+CGG + chr1_4:4301110-4301129 Msa0144780:intron 30.0%
!! ATGTTCTCGGTTATTTCTTT+AGG + chr1_4:4301123-4301142 Msa0144780:intron 30.0%
! TGGTTCTCTTTTACTATTTC+AGG + chr1_4:4301186-4301205 Msa0144780:intron 30.0%
ATAATGAACTCATCTTTCTC+TGG + chr1_4:4301329-4301348 Msa0144780:intron 30.0%
TCATCTTTCTCTGGTATTTA+TGG + chr1_4:4301338-4301357 Msa0144780:intron 30.0%
TGGTATTTATGGACGTTATT+GGG + chr1_4:4301349-4301368 Msa0144780:intron 30.0%
ACGTTATTGGGCTATTATTT+AGG + chr1_4:4301361-4301380 Msa0144780:intron 30.0%
! TCTTCTAAAAACTCCAGAAT+AGG - chr1_4:4301449-4301468 None:intergenic 30.0%
!!! TTCTGGAGTTTTTAGAAGAA+TGG + chr1_4:4301450-4301469 Msa0144780:CDS 30.0%
!! TCTGGAGTTTTTAGAAGAAT+GGG + chr1_4:4301451-4301470 Msa0144780:CDS 30.0%
! TCCTACATAGTGGAAAAAAA+AGG - chr1_4:4301559-4301578 None:intergenic 30.0%
! ACGAAAATTTTTGTAGCTTG+GGG - chr1_4:4301601-4301620 None:intergenic 30.0%
! AAATTTTCGTAAATGGTTGC+TGG + chr1_4:4301611-4301630 Msa0144780:CDS 30.0%
! TGATTTTGTCTTGAGTCTTT+TGG + chr1_4:4301716-4301735 Msa0144780:intron 30.0%
! AGTTTCAAAGACAGCTTTTT+AGG - chr1_4:4301745-4301764 None:intergenic 30.0%
AGTGTAGTAGATACAATCAT+TGG + chr1_4:4301793-4301812 Msa0144780:intron 30.0%
! CATGTCGTTCTTTTATAAGA+AGG - chr1_4:4301848-4301867 None:intergenic 30.0%
CTTCTTATAAAAGAACGACA+TGG + chr1_4:4301846-4301865 Msa0144780:intron 30.0%
AAATACTATTGTGTGCCTTA+AGG + chr1_4:4301880-4301899 Msa0144780:intron 30.0%
GTAGTCTATATTTCTTAGCA+AGG + chr1_4:4302031-4302050 Msa0144780:intron 30.0%
!! AATCTTTTGGGTGAGATATT+TGG + chr1_4:4302066-4302085 Msa0144780:intron 30.0%
ATTTGGAGAGAATTCTTGTA+TGG + chr1_4:4302083-4302102 Msa0144780:intron 30.0%
! ACGAGATCTTTTAACCAAAA+AGG + chr1_4:4302136-4302155 Msa0144780:intron 30.0%
! TAATCATAGTTTAGTGCTGA+TGG + chr1_4:4302319-4302338 Msa0144780:intron 30.0%
GTTGATGTTAATACTGAAGT+TGG + chr1_4:4302358-4302377 Msa0144780:CDS 30.0%
TGATGTTAATACTGAAGTTG+GGG + chr1_4:4302360-4302379 Msa0144780:CDS 30.0%
!! ACTTGTTTTTCCATTTCTTC+AGG + chr1_4:4302576-4302595 Msa0144780:intron 30.0%
GATATATTCTATAAAGCCCT+TGG - chr1_4:4302638-4302657 None:intergenic 30.0%
!! AGTACTGACATTAATTGTCA+TGG - chr1_4:4302692-4302711 None:intergenic 30.0%
ATACCATATTTACCTGATTG+TGG - chr1_4:4302933-4302952 None:intergenic 30.0%
AATCTCTATCTTCTTACCTT+TGG + chr1_4:4302994-4303013 Msa0144780:intron 30.0%
CAAAATTTACAATTCCAGCA+GGG - chr1_4:4303286-4303305 None:intergenic 30.0%
TCAAAATTTACAATTCCAGC+AGG - chr1_4:4303287-4303306 None:intergenic 30.0%
!! CTCTATTTTTCCGTTCATAT+AGG + chr1_4:4303475-4303494 Msa0144780:CDS 30.0%
CAGAGATGAAGAGAAAAAAA+TGG + chr1_4:4303585-4303604 Msa0144780:intron 30.0%
! ACTCTTGTCAAAGAAGATTT+TGG + chr1_4:4303610-4303629 Msa0144780:CDS 30.0%
!! TTGTCAAAGAAGATTTTGGT+CGG + chr1_4:4303614-4303633 Msa0144780:CDS 30.0%
ATAGCAAATCAACAACATGT+AGG - chr1_4:4303679-4303698 None:intergenic 30.0%
!! CATGTTGTTGATTTGCTATT+TGG + chr1_4:4303680-4303699 Msa0144780:intron 30.0%
GCATGGTTCTTATGATAAAT+TGG + chr1_4:4303738-4303757 Msa0144780:CDS 30.0%
TCAAAATATATGCTTACAGG+TGG - chr1_4:4303781-4303800 None:intergenic 30.0%
CTGTCAAAATATATGCTTAC+AGG - chr1_4:4303784-4303803 None:intergenic 30.0%
AACTTTCAGACATGTTATTC+AGG - chr1_4:4303810-4303829 None:intergenic 30.0%
GCAATTTATCACTATGAAAC+AGG + chr1_4:4303850-4303869 Msa0144780:intron 30.0%
ATACCAAAATCCTGAATTTC+TGG + chr1_4:4304148-4304167 Msa0144780:intron 30.0%
TGGATTGACAATAATATCAG+GGG - chr1_4:4304386-4304405 None:intergenic 30.0%
! GTGGATTGACAATAATATCA+GGG - chr1_4:4304387-4304406 None:intergenic 30.0%
! TGTGGATTGACAATAATATC+AGG - chr1_4:4304388-4304407 None:intergenic 30.0%
CTTACAGTAACATCTGTAAA+AGG - chr1_4:4304502-4304521 None:intergenic 30.0%
CATACAAAATACAATAGGCA+CGG - chr1_4:4304611-4304630 None:intergenic 30.0%
! TTTTACCCTTCCACTTAAAT+AGG + chr1_4:4304635-4304654 Msa0144780:intron 30.0%
TTTACCCTTCCACTTAAATA+GGG + chr1_4:4304636-4304655 Msa0144780:intron 30.0%
AAAACAATTTCCTTGTGTAC+TGG - chr1_4:4304688-4304707 None:intergenic 30.0%
! ATTGTTTTCTACTGTAATCC+AGG + chr1_4:4304923-4304942 Msa0144780:intron 30.0%
!! AGAAGAATTCTTTTGAGTGT+AGG + chr1_4:4305315-4305334 Msa0144780:CDS 30.0%
!! GAAGAATTCTTTTGAGTGTA+GGG + chr1_4:4305316-4305335 Msa0144780:CDS 30.0%
!! AAGAATTCTTTTGAGTGTAG+GGG + chr1_4:4305317-4305336 Msa0144780:CDS 30.0%
! AGATTCTTAGTTTCTCGTTT+TGG + chr1_4:4305436-4305455 Msa0144780:intron 30.0%
! GAAATGACATTCCTTTTGTT+GGG + chr1_4:4305752-4305771 Msa0144780:three_prime_UTR 30.0%
GACATTCCATTTATATGTCA+AGG + chr1_4:4305779-4305798 Msa0144780:three_prime_UTR 30.0%
!!! TATGGTGTCTTTGTTTTGTA+TGG + chr1_4:4306042-4306061 Msa0144780:three_prime_UTR 30.0%
!!! ATGGTGTCTTTGTTTTGTAT+GGG + chr1_4:4306043-4306062 Msa0144780:three_prime_UTR 30.0%
!!! AATCACTTTTTCTCTCTGCT+AGG + chr1_4:4296135-4296154 Msa0144780:five_prime_UTR 35.0%
!!! ATCACTTTTTCTCTCTGCTA+GGG + chr1_4:4296136-4296155 Msa0144780:five_prime_UTR 35.0%
!! ACCTTCAACTCACTTTTAGT+TGG + chr1_4:4297032-4297051 Msa0144780:intron 35.0%
! TCCAACTAAAAGTGAGTTGA+AGG - chr1_4:4297036-4297055 None:intergenic 35.0%
TTTGAGTAAGCCAATGATGA+CGG + chr1_4:4297489-4297508 Msa0144780:CDS 35.0%
TCTAAGAGGGTCATTAAGAA+AGG + chr1_4:4297598-4297617 Msa0144780:CDS 35.0%
CTAAGAGGGTCATTAAGAAA+GGG + chr1_4:4297599-4297618 Msa0144780:CDS 35.0%
TACCTTGCCAATGAAAACTT+TGG - chr1_4:4297662-4297681 None:intergenic 35.0%
ATACTAGAATTGAGAGGAAG+GGG - chr1_4:4297685-4297704 None:intergenic 35.0%
GAATACTAGAATTGAGAGGA+AGG - chr1_4:4297687-4297706 None:intergenic 35.0%
AAACTTCCTAAACACTACAC+AGG - chr1_4:4297838-4297857 None:intergenic 35.0%
TGTGTAGTGTTTAGGAAGTT+TGG + chr1_4:4297837-4297856 Msa0144780:intron 35.0%
GTGTAGTGTTTAGGAAGTTT+GGG + chr1_4:4297838-4297857 Msa0144780:intron 35.0%
!!! TGGTTTTGTAAGGTTGAGTT+AGG + chr1_4:4297880-4297899 Msa0144780:intron 35.0%
!!! TAGGCCTTTTTTGTTGTTTG+TGG + chr1_4:4298128-4298147 Msa0144780:intron 35.0%
TAACTAGACCGAAGCATAAT+AGG - chr1_4:4298390-4298409 None:intergenic 35.0%
CATTATTAATGGCAGTGAGA+AGG + chr1_4:4298485-4298504 Msa0144780:CDS 35.0%
ACCTAACAAGTATGCTTATG+TGG + chr1_4:4298566-4298585 Msa0144780:CDS 35.0%
CCTAACAAGTATGCTTATGT+GGG + chr1_4:4298567-4298586 Msa0144780:CDS 35.0%
!! TTTGTGTAGTTTTTGCTGTG+TGG + chr1_4:4298705-4298724 Msa0144780:intron 35.0%
GGAATTTCAGTTCGAATGTA+AGG - chr1_4:4298834-4298853 None:intergenic 35.0%
ATTATTGTGTTTCGGGCATT+GGG + chr1_4:4298858-4298877 Msa0144780:CDS 35.0%
ATGTTCAAGGATATCCTTGT+CGG - chr1_4:4298892-4298911 None:intergenic 35.0%
TATCACAAATGCTTCTTCCA+GGG - chr1_4:4298964-4298983 None:intergenic 35.0%
GTGATACAAAATCAACAGGT+TGG + chr1_4:4298978-4298997 Msa0144780:intron 35.0%
ATTTCAGACTGTTCAGAAGA+TGG + chr1_4:4299105-4299124 Msa0144780:intron 35.0%
GCTAGAAACTAATCCAAACT+GGG - chr1_4:4299179-4299198 None:intergenic 35.0%
AGCTAGAAACTAATCCAAAC+TGG - chr1_4:4299180-4299199 None:intergenic 35.0%
! CCTTATAAGAGCTGTTTCAT+GGG - chr1_4:4299241-4299260 None:intergenic 35.0%
! ACCTTATAAGAGCTGTTTCA+TGG - chr1_4:4299242-4299261 None:intergenic 35.0%
ATAGGCGTTTGTGAAGTTAA+AGG + chr1_4:4299263-4299282 Msa0144780:intron 35.0%
! CGTTTGTGTAGAAGCTTTAT+AGG + chr1_4:4299293-4299312 Msa0144780:intron 35.0%
TGTTGCAATAACCATCTGTA+TGG - chr1_4:4299378-4299397 None:intergenic 35.0%
TAGGGAAATATTGCACTCTT+TGG + chr1_4:4299628-4299647 Msa0144780:intron 35.0%
CAATATAATCAAGTGCAACC+TGG - chr1_4:4299720-4299739 None:intergenic 35.0%
CAGGTTGCACTTGATTATAT+TGG + chr1_4:4299718-4299737 Msa0144780:intron 35.0%
GTGTAACAGTTGCTTCATAA+TGG - chr1_4:4299834-4299853 None:intergenic 35.0%
TCCACAGATATATCATTCAC+CGG + chr1_4:4300023-4300042 Msa0144780:intron 35.0%
GAAGATGATAGGGATCATTA+TGG + chr1_4:4300076-4300095 Msa0144780:CDS 35.0%
GGGATCATTATGGAAATAAG+AGG + chr1_4:4300086-4300105 Msa0144780:CDS 35.0%
TCATTATGGAAATAAGAGGC+TGG + chr1_4:4300090-4300109 Msa0144780:CDS 35.0%
CATCACAAATTATAGGAACC+AGG - chr1_4:4300227-4300246 None:intergenic 35.0%
AAAGTTGACTAGAGATGTCA+GGG + chr1_4:4300258-4300277 Msa0144780:CDS 35.0%
TTCAAGAGGTAGAAGGTTAT+AGG - chr1_4:4300347-4300366 None:intergenic 35.0%
ATAACCTTCTACCTCTTGAA+TGG + chr1_4:4300347-4300366 Msa0144780:intron 35.0%
! TTGCTTTGATAGCAAATTGC+AGG - chr1_4:4300404-4300423 None:intergenic 35.0%
AAAGCAAAAACCATCACAAG+TGG + chr1_4:4300417-4300436 Msa0144780:CDS 35.0%
CGAAGATTGAATTCTCCTAT+AGG + chr1_4:4300654-4300673 Msa0144780:CDS 35.0%
TTATGCAACAATGCACAAAG+AGG - chr1_4:4300741-4300760 None:intergenic 35.0%
GGTTCAAAACCGGTTATATT+CGG + chr1_4:4301044-4301063 Msa0144780:intron 35.0%
AAAACCGGTTATATTCGGTT+TGG + chr1_4:4301049-4301068 Msa0144780:intron 35.0%
TGAACCAAACCGAATATAAC+CGG - chr1_4:4301056-4301075 None:intergenic 35.0%
! CCATTGATTGTATCAACTAC+GGG - chr1_4:4301092-4301111 None:intergenic 35.0%
ACAGCTGCATAATTCACAAT+GGG + chr1_4:4301227-4301246 Msa0144780:CDS 35.0%
AAAATACTCACTTGTCCTTC+TGG - chr1_4:4301276-4301295 None:intergenic 35.0%
CTGGTATTTATGGACGTTAT+TGG + chr1_4:4301348-4301367 Msa0144780:intron 35.0%
!! CTGGAGTTTTTAGAAGAATG+GGG + chr1_4:4301452-4301471 Msa0144780:CDS 35.0%
!!! GCCTTTTTTTTCCACTATGT+AGG + chr1_4:4301555-4301574 Msa0144780:intron 35.0%
AGGAGAAATTTCCTACATAG+TGG - chr1_4:4301569-4301588 None:intergenic 35.0%
TATGTAGGAAATTTCTCCTG+CGG + chr1_4:4301570-4301589 Msa0144780:intron 35.0%
ATGTCCTAACCAACATATCA+GGG - chr1_4:4301654-4301673 None:intergenic 35.0%
AATGTCCTAACCAACATATC+AGG - chr1_4:4301655-4301674 None:intergenic 35.0%
!! AAAGCTGTCTTTGAAACTGT+TGG + chr1_4:4301747-4301766 Msa0144780:intron 35.0%
TTCCTTAAGCAATGTCCTTA+AGG - chr1_4:4301898-4301917 None:intergenic 35.0%
! ATATGCGCAGTTCTTTAAGA+CGG - chr1_4:4302399-4302418 None:intergenic 35.0%
CTGCGCATATATACAGATTA+TGG + chr1_4:4302409-4302428 Msa0144780:CDS 35.0%
ACATTCATTCTTTGCAGCAA+AGG + chr1_4:4302491-4302510 Msa0144780:CDS 35.0%
CATTCATTCTTTGCAGCAAA+GGG + chr1_4:4302492-4302511 Msa0144780:CDS 35.0%
AGAATATATCGACACAGAAG+AGG + chr1_4:4302648-4302667 Msa0144780:CDS 35.0%
GTATCAGAATATGCTTCTTC+TGG - chr1_4:4302841-4302860 None:intergenic 35.0%
!!! AATCCATCCATCACTGATTT+TGG + chr1_4:4302876-4302895 Msa0144780:CDS 35.0%
!!! ATCCATCCATCACTGATTTT+GGG + chr1_4:4302877-4302896 Msa0144780:CDS 35.0%
ATATTTACCTGATTGTGGTC+AGG - chr1_4:4302928-4302947 None:intergenic 35.0%
TGACCACAATCAGGTAAATA+TGG + chr1_4:4302927-4302946 Msa0144780:intron 35.0%
!! TATGGTATTTTGGGTGTATG+AGG + chr1_4:4302945-4302964 Msa0144780:intron 35.0%
!! ATGGTATTTTGGGTGTATGA+GGG + chr1_4:4302946-4302965 Msa0144780:intron 35.0%
TAATACGTATCAGTCTGCTA+TGG + chr1_4:4303037-4303056 Msa0144780:CDS 35.0%
AATACGTATCAGTCTGCTAT+GGG + chr1_4:4303038-4303057 Msa0144780:CDS 35.0%
TGAACAATACCATTCGAAAC+TGG - chr1_4:4303097-4303116 None:intergenic 35.0%
TAATGTGCCATACTTGATTC+TGG + chr1_4:4303145-4303164 Msa0144780:intron 35.0%
! ATGCTTTTGCTTCATTGCTT+AGG + chr1_4:4303178-4303197 Msa0144780:intron 35.0%
ATATTATCCTCAAAAGCCAC+TGG + chr1_4:4303220-4303239 Msa0144780:CDS 35.0%
ATAACATGAAATGGCCACAA+TGG - chr1_4:4303388-4303407 None:intergenic 35.0%
AGCAAACAGACCTATATGAA+CGG - chr1_4:4303488-4303507 None:intergenic 35.0%
! CAAAATTTTCACCATGGTGT+TGG - chr1_4:4303650-4303669 None:intergenic 35.0%
! CAACACCATGGTGAAAATTT+TGG + chr1_4:4303648-4303667 Msa0144780:intron 35.0%
! AAGAGCCAAAATTTTCACCA+TGG - chr1_4:4303656-4303675 None:intergenic 35.0%
TCTGGTGAGGATGTTATTAT+TGG + chr1_4:4303884-4303903 Msa0144780:CDS 35.0%
CTACTATTCCAGTTTCACTA+TGG - chr1_4:4303991-4304010 None:intergenic 35.0%
! AAGCCAGAAATTCAGGATTT+TGG - chr1_4:4304154-4304173 None:intergenic 35.0%
AAGAGTAAAGCCAGAAATTC+AGG - chr1_4:4304161-4304180 None:intergenic 35.0%
GTCAACAGAACCTACAAAAT+AGG - chr1_4:4304208-4304227 None:intergenic 35.0%
GTTGAGATTCGTGAAAGTAA+GGG + chr1_4:4304243-4304262 Msa0144780:CDS 35.0%
GACAAATTCAGTAGTAGACA+CGG + chr1_4:4304295-4304314 Msa0144780:CDS 35.0%
ATACCTTCTCGAATGACAAT+TGG + chr1_4:4304412-4304431 Msa0144780:CDS 35.0%
TTGTCCCTATTTAAGTGGAA+GGG - chr1_4:4304643-4304662 None:intergenic 35.0%
AGCAAAGCTTTACACAAATG+TGG + chr1_4:4304957-4304976 Msa0144780:CDS 35.0%
GCAAAGCTTTACACAAATGT+GGG + chr1_4:4304958-4304977 Msa0144780:CDS 35.0%
!!! GGTTTTGAGACAATGTACAA+TGG + chr1_4:4304993-4305012 Msa0144780:CDS 35.0%
ACAATGTACAATGGTCATAC+AGG + chr1_4:4305002-4305021 Msa0144780:CDS 35.0%
! TCAGTGCAATGATTTTCCTT+GGG + chr1_4:4305033-4305052 Msa0144780:CDS 35.0%
! TTCAACCTTTGGTAATAGGT+AGG - chr1_4:4305059-4305078 None:intergenic 35.0%
! ATGCTTCAACCTTTGGTAAT+AGG - chr1_4:4305063-4305082 None:intergenic 35.0%
TTACCAAAGGTTGAAGCATA+TGG + chr1_4:4305064-4305083 Msa0144780:CDS 35.0%
GATCAAACAGTCTTTCCTTT+AGG - chr1_4:4305232-4305251 None:intergenic 35.0%
GAACAAAACTGACATTGTTC+AGG + chr1_4:4305346-4305365 Msa0144780:CDS 35.0%
TCCAAGAATGCTTACTAAAG+AGG + chr1_4:4305537-4305556 Msa0144780:CDS 35.0%
ACCTCTTTAGTAAGCATTCT+TGG - chr1_4:4305541-4305560 None:intergenic 35.0%
!! TTTTCTCAAACTTGCTCATC+AGG - chr1_4:4305596-4305615 None:intergenic 35.0%
AGTCAACATGGAATAAAGAC+TGG - chr1_4:4305623-4305642 None:intergenic 35.0%
! GGAAATGACATTCCTTTTGT+TGG + chr1_4:4305751-4305770 Msa0144780:three_prime_UTR 35.0%
! GAATGTCATTTCCCAACAAA+AGG - chr1_4:4305766-4305785 None:intergenic 35.0%
TACATTACCAGATGCGATAT+AGG - chr1_4:4305879-4305898 None:intergenic 35.0%
!!! TCTTTGTTTTGTATGGGTGA+AGG + chr1_4:4306049-4306068 Msa0144780:three_prime_UTR 35.0%
AAACGAATTCGACCAGCAAA+TGG + chr1_4:4296271-4296290 Msa0144780:CDS 40.0%
AAATCACCCAAGAAGATGCT+TGG + chr1_4:4296315-4296334 Msa0144780:CDS 40.0%
AATCACCCAAGAAGATGCTT+GGG + chr1_4:4296316-4296335 Msa0144780:CDS 40.0%
! GTTCTGGATGAATTCATCGA+AGG - chr1_4:4296396-4296415 None:intergenic 40.0%
TTCATCAACTATCTCCTGCA+TGG - chr1_4:4296420-4296439 None:intergenic 40.0%
TCTAACTACCTCAGCGAAAT+CGG - chr1_4:4296495-4296514 None:intergenic 40.0%
! TGGGTCAAAATTGATTCTGG+AGG + chr1_4:4296854-4296873 Msa0144780:intron 40.0%
! ATAATCTGTAACTAACGGGC+TGG + chr1_4:4297388-4297407 Msa0144780:intron 40.0%
CATTGTTTCCTAAAGCTGCT+AGG + chr1_4:4297533-4297552 Msa0144780:CDS 40.0%
! GTCATTAAGAAAGGGCATGA+TGG + chr1_4:4297607-4297626 Msa0144780:CDS 40.0%
! CACCAAAGTTTTCATTGGCA+AGG + chr1_4:4297657-4297676 Msa0144780:CDS 40.0%
ACACAAATGCCACAATTAGG+AGG - chr1_4:4297744-4297763 None:intergenic 40.0%
GCAACACAAATGCCACAATT+AGG - chr1_4:4297747-4297766 None:intergenic 40.0%
! GGTGTTGGATGCTTTAATGA+AGG - chr1_4:4297769-4297788 None:intergenic 40.0%
ATCCAACACCTTCATTGTGT+TGG + chr1_4:4297779-4297798 Msa0144780:intron 40.0%
TCCAACACCTTCATTGTGTT+GGG + chr1_4:4297780-4297799 Msa0144780:intron 40.0%
AAATCCACCCAACACAATGA+AGG - chr1_4:4297790-4297809 None:intergenic 40.0%
AAATCGCCTGTGTAGTGTTT+AGG + chr1_4:4297829-4297848 Msa0144780:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG - chr1_4:4297867-4297886 None:intergenic 40.0%
CCTTACAAAACCAGCTTGTA+AGG - chr1_4:4297873-4297892 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG + chr1_4:4297870-4297889 Msa0144780:intron 40.0%
TTCAGTGATAAGCTCACAGT+AGG + chr1_4:4298109-4298128 Msa0144780:intron 40.0%
ATAATTGGATCGGACTTCTG+AGG + chr1_4:4298325-4298344 Msa0144780:intron 40.0%
GGCCTGAGTAACCTAAATAA+TGG + chr1_4:4298346-4298365 Msa0144780:intron 40.0%
TGAGAAGGTTCTTATTGCTC+AGG + chr1_4:4298500-4298519 Msa0144780:CDS 40.0%
CCCACATAAGCATACTTGTT+AGG - chr1_4:4298570-4298589 None:intergenic 40.0%
ATGCTTATGTGGGTGAAGTT+CGG + chr1_4:4298577-4298596 Msa0144780:CDS 40.0%
! GCGATTTTCATTTACCCCTT+TGG - chr1_4:4298670-4298689 None:intergenic 40.0%
GCCCGAAACACAATAATGAT+AGG - chr1_4:4298855-4298874 None:intergenic 40.0%
CATTATTGTGTTTCGGGCAT+TGG + chr1_4:4298857-4298876 Msa0144780:CDS 40.0%
! TTATTGTGTTTCGGGCATTG+GGG + chr1_4:4298859-4298878 Msa0144780:CDS 40.0%
CTTTGCGGATACTCAAATGA+TGG + chr1_4:4298923-4298942 Msa0144780:CDS 40.0%
GTATCACAAATGCTTCTTCC+AGG - chr1_4:4298965-4298984 None:intergenic 40.0%
CCCATGAAACAGCTCTTATA+AGG + chr1_4:4299238-4299257 Msa0144780:intron 40.0%
GCTCTTTGTTACCATACAGA+TGG + chr1_4:4299364-4299383 Msa0144780:intron 40.0%
GGAAAAAGAGGATCAACTGT+AGG + chr1_4:4299739-4299758 Msa0144780:CDS 40.0%
ATCAACTGTAGGTGTAACCA+AGG + chr1_4:4299750-4299769 Msa0144780:CDS 40.0%
ACACTTGTATCCTAATCTGC+AGG + chr1_4:4299850-4299869 Msa0144780:intron 40.0%
TGCTAAGGACATCCTTCAAA+AGG + chr1_4:4299875-4299894 Msa0144780:CDS 40.0%
ATACTCTCCAACACCAACAT+GGG - chr1_4:4299910-4299929 None:intergenic 40.0%
AATACTCTCCAACACCAACA+TGG - chr1_4:4299911-4299930 None:intergenic 40.0%
GAAAGTTGACTAGAGATGTC+AGG + chr1_4:4300257-4300276 Msa0144780:CDS 40.0%
AAGTTGACTAGAGATGTCAG+GGG + chr1_4:4300259-4300278 Msa0144780:CDS 40.0%
! ATGGTGCAGTGTGTTGATAA+TGG + chr1_4:4300366-4300385 Msa0144780:intron 40.0%
!! TGGTGCAGTGTGTTGATAAT+GGG + chr1_4:4300367-4300386 Msa0144780:intron 40.0%
GTACTTAAGTCCACTTGTGA+TGG - chr1_4:4300430-4300449 None:intergenic 40.0%
! CTTAAGTACTCACTTGCTAC+TGG + chr1_4:4300441-4300460 Msa0144780:CDS 40.0%
! ACTCACTTGCTACTGGTAAT+TGG + chr1_4:4300448-4300467 Msa0144780:CDS 40.0%
! CTCACTTGCTACTGGTAATT+GGG + chr1_4:4300449-4300468 Msa0144780:CDS 40.0%
! TCACTTGCTACTGGTAATTG+GGG + chr1_4:4300450-4300469 Msa0144780:CDS 40.0%
! CATCTTTAGAAGACAGAGCA+CGG - chr1_4:4300549-4300568 None:intergenic 40.0%
! GTGTGATAAAGTGGAAGCAT+AGG - chr1_4:4300631-4300650 None:intergenic 40.0%
TCTTCGCAAGTGTGATAAAG+TGG - chr1_4:4300640-4300659 None:intergenic 40.0%
AATTCTCCTATAGGACGTGA+AGG + chr1_4:4300663-4300682 Msa0144780:CDS 40.0%
CAATTACCTTCACGTCCTAT+AGG - chr1_4:4300672-4300691 None:intergenic 40.0%
!!! AATGGTTTTGGTTCTGAACC+AGG - chr1_4:4300804-4300823 None:intergenic 40.0%
TGAGCAATTTGGTTGTGGAT+TGG - chr1_4:4300878-4300897 None:intergenic 40.0%
CATGAACCAAACCAAACTGA+TGG + chr1_4:4300958-4300977 Msa0144780:intron 40.0%
ACCAAACCAAACTGATGGTT+TGG + chr1_4:4300963-4300982 Msa0144780:intron 40.0%
ACCAAACCATCAGTTTGGTT+TGG - chr1_4:4300967-4300986 None:intergenic 40.0%
ACTGAACCAAACCATCAGTT+TGG - chr1_4:4300972-4300991 None:intergenic 40.0%
! CCCGTAGTTGATACAATCAA+TGG + chr1_4:4301089-4301108 Msa0144780:intron 40.0%
ATTATGCAGCTGTCTTGGTT+TGG - chr1_4:4301220-4301239 None:intergenic 40.0%
TGTGAATTATGCAGCTGTCT+TGG - chr1_4:4301225-4301244 None:intergenic 40.0%
GACAGCTGCATAATTCACAA+TGG + chr1_4:4301226-4301245 Msa0144780:CDS 40.0%
CAGCTGCATAATTCACAATG+GGG + chr1_4:4301228-4301247 Msa0144780:CDS 40.0%
TATTATTTAGGCCTGTGGAC+TGG + chr1_4:4301373-4301392 Msa0144780:intron 40.0%
TTCAGCAGCATATCCTATTC+TGG + chr1_4:4301433-4301452 Msa0144780:CDS 40.0%
! ATGGGGCACAGAAAATTTTG+AGG + chr1_4:4301469-4301488 Msa0144780:CDS 40.0%
TTTCGTAAATGGTTGCTGGA+TGG + chr1_4:4301615-4301634 Msa0144780:CDS 40.0%
TTCGTAAATGGTTGCTGGAT+GGG + chr1_4:4301616-4301635 Msa0144780:CDS 40.0%
TGCCTTAAGGACATTGCTTA+AGG + chr1_4:4301893-4301912 Msa0144780:intron 40.0%
CAACCACATCTGACTTTGTT+GGG - chr1_4:4302197-4302216 None:intergenic 40.0%
ACAACCACATCTGACTTTGT+TGG - chr1_4:4302198-4302217 None:intergenic 40.0%
CAGTCGTCCTTTATTCATTG+TGG + chr1_4:4302438-4302457 Msa0144780:CDS 40.0%
TCCATTTCTTCAGGAATCAC+CGG + chr1_4:4302585-4302604 Msa0144780:intron 40.0%
AACAGGATCTTGTACAAGCA+AGG + chr1_4:4302809-4302828 Msa0144780:intron 40.0%
CATACACCCAAAATCAGTGA+TGG - chr1_4:4302886-4302905 None:intergenic 40.0%
CTCTATCTTCTTACCTTTGG+TGG + chr1_4:4302997-4303016 Msa0144780:intron 40.0%
AGACTGATACGTATTACGAG+GGG - chr1_4:4303033-4303052 None:intergenic 40.0%
CAGACTGATACGTATTACGA+GGG - chr1_4:4303034-4303053 None:intergenic 40.0%
TACCAACTACCAGTTTCGAA+TGG + chr1_4:4303085-4303104 Msa0144780:CDS 40.0%
TACCATTCGAAACTGGTAGT+TGG - chr1_4:4303090-4303109 None:intergenic 40.0%
GTGGAATCCAGAATCAAGTA+TGG - chr1_4:4303155-4303174 None:intergenic 40.0%
!! AATGAAGCAAAAGCATCAGG+TGG - chr1_4:4303174-4303193 None:intergenic 40.0%
!! AGCAATGAAGCAAAAGCATC+AGG - chr1_4:4303177-4303196 None:intergenic 40.0%
CTTCATTGCTTAGGATACCT+TGG + chr1_4:4303187-4303206 Msa0144780:intron 40.0%
ACGAAAATGAAGATGCTCCA+TGG - chr1_4:4303258-4303277 None:intergenic 40.0%
GTGGCCATTTCATGTTATTC+TGG + chr1_4:4303390-4303409 Msa0144780:CDS 40.0%
AACCAATCATCAATAGACCG+TGG + chr1_4:4303441-4303460 Msa0144780:CDS 40.0%
AAAAACCACTCCTCTATCTC+AGG + chr1_4:4303907-4303926 Msa0144780:CDS 40.0%
AGTTTACGCCATAGTGAAAC+TGG + chr1_4:4303980-4303999 Msa0144780:CDS 40.0%
!!! GCTTTACTCTTTTTTGCTGC+TGG + chr1_4:4304170-4304189 Msa0144780:intron 40.0%
TGTTGACCACAAATGCTGAT+GGG + chr1_4:4304221-4304240 Msa0144780:CDS 40.0%
GGTTGAGATTCGTGAAAGTA+AGG + chr1_4:4304242-4304261 Msa0144780:CDS 40.0%
TCTGTTCGAATACCACAGAT+TGG + chr1_4:4304271-4304290 Msa0144780:CDS 40.0%
CTGAATTTGTCACCAATCTG+TGG - chr1_4:4304286-4304305 None:intergenic 40.0%
! ATTCGAGAAGGTATAGCATG+TGG - chr1_4:4304406-4304425 None:intergenic 40.0%
TGACCAATTGTCATTCGAGA+AGG - chr1_4:4304418-4304437 None:intergenic 40.0%
TCAGCTTATCGAGTGTATCA+TGG + chr1_4:4304435-4304454 Msa0144780:CDS 40.0%
CAGCTTATCGAGTGTATCAT+GGG + chr1_4:4304436-4304455 Msa0144780:CDS 40.0%
AGCTTATCGAGTGTATCATG+GGG + chr1_4:4304437-4304456 Msa0144780:CDS 40.0%
! ATCTCCTTCTTTTCCCATGT+GGG - chr1_4:4304473-4304492 None:intergenic 40.0%
GTTGTCCCTATTTAAGTGGA+AGG - chr1_4:4304644-4304663 None:intergenic 40.0%
TCCACTTAAATAGGGACAAC+TGG + chr1_4:4304644-4304663 Msa0144780:intron 40.0%
ACTGGTAGAGTGCATATTGT+TGG - chr1_4:4304670-4304689 None:intergenic 40.0%
! GTTTTCTACTGTAATCCAGG+TGG + chr1_4:4304926-4304945 Msa0144780:intron 40.0%
CTTTGCTGATATTATCCACC+TGG - chr1_4:4304944-4304963 None:intergenic 40.0%
TTGTCTCAAAACCACGCATT+TGG - chr1_4:4304986-4305005 None:intergenic 40.0%
TGTACAATGGTCATACAGGA+AGG + chr1_4:4305006-4305025 Msa0144780:CDS 40.0%
! CTCAGTGCAATGATTTTCCT+TGG + chr1_4:4305032-4305051 Msa0144780:CDS 40.0%
CAACCATATGCTTCAACCTT+TGG - chr1_4:4305070-4305089 None:intergenic 40.0%
! TCTTTCCTTTAGGAAGTGAG+CGG - chr1_4:4305222-4305241 None:intergenic 40.0%
TAAGTCCGTATTGAAGTCCA+TGG + chr1_4:4305396-4305415 Msa0144780:intron 40.0%
GAACACCATGGACTTCAATA+CGG - chr1_4:4305404-4305423 None:intergenic 40.0%
GAAACTAAGAATCTAGCACC+AGG - chr1_4:4305430-4305449 None:intergenic 40.0%
!! TGGCTTTTGATTGTCTTTGC+AGG + chr1_4:4305456-4305475 Msa0144780:intron 40.0%
AAGAGCAGCTTACAAGCATA+AGG - chr1_4:4305490-4305509 None:intergenic 40.0%
AGTAAGCATTCTTGGAGCTA+TGG - chr1_4:4305533-4305552 None:intergenic 40.0%
! ATCAGGCTCCTTTCTTCTTT+TGG - chr1_4:4305579-4305598 None:intergenic 40.0%
! ATCAGTAGCCTTTCAAGTGT+TGG + chr1_4:4305729-4305748 Msa0144780:three_prime_UTR 40.0%
! TCAGTAGCCTTTCAAGTGTT+GGG + chr1_4:4305730-4305749 Msa0144780:three_prime_UTR 40.0%
GTCATTTCCCAACACTTGAA+AGG - chr1_4:4305740-4305759 None:intergenic 40.0%
! TGGGTTAAGAGGTATGTTTC+AGG - chr1_4:4305833-4305852 None:intergenic 40.0%
!! AGACCTGAATGCGTTTTGTT+TGG + chr1_4:4305963-4305982 Msa0144780:three_prime_UTR 40.0%
!!! GACCTGAATGCGTTTTGTTT+GGG + chr1_4:4305964-4305983 Msa0144780:three_prime_UTR 40.0%
!!! GTTTTGTTTGGGTGAAGTAC+CGG + chr1_4:4305975-4305994 Msa0144780:three_prime_UTR 40.0%
ATTCGACCAGCAAATGGAAG+AGG + chr1_4:4296277-4296296 Msa0144780:CDS 45.0%
AATGGAAGAGGAAGACGATG+AGG + chr1_4:4296289-4296308 Msa0144780:CDS 45.0%
CGAAGGAATCAAGCTGTTGA+CGG - chr1_4:4296379-4296398 None:intergenic 45.0%
ATTCATCCAGAACACCATGC+AGG + chr1_4:4296403-4296422 Msa0144780:CDS 45.0%
GGGTCGAATTTCGATATCAG+CGG - chr1_4:4296444-4296463 None:intergenic 45.0%
CCAGGATTATGCTGAGATTC+GGG - chr1_4:4296464-4296483 None:intergenic 45.0%
GCCAGGATTATGCTGAGATT+CGG - chr1_4:4296465-4296484 None:intergenic 45.0%
CCATCAGATTCCGTCATCAT+TGG - chr1_4:4297502-4297521 None:intergenic 45.0%
!! CCAATGATGACGGAATCTGA+TGG + chr1_4:4297499-4297518 Msa0144780:CDS 45.0%
TTCCTAAAGCTGCTAGGCTT+AGG + chr1_4:4297539-4297558 Msa0144780:CDS 45.0%
TTCCTAAGCCTAGCAGCTTT+AGG - chr1_4:4297544-4297563 None:intergenic 45.0%
ATGCCACAATTAGGAGGCTA+GGG - chr1_4:4297738-4297757 None:intergenic 45.0%
AATGCCACAATTAGGAGGCT+AGG - chr1_4:4297739-4297758 None:intergenic 45.0%
! ACCCAACACAATGAAGGTGT+TGG - chr1_4:4297784-4297803 None:intergenic 45.0%
AACACCTTCATTGTGTTGGG+TGG + chr1_4:4297783-4297802 Msa0144780:intron 45.0%
ACTACACAGGCGATTTCTCT+AGG - chr1_4:4297825-4297844 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG - chr1_4:4297868-4297887 None:intergenic 45.0%
! TCTGTTTTGTGACTCTGCCA+TGG - chr1_4:4298604-4298623 None:intergenic 45.0%
ATGCGCACAAACATAGTGCT+AGG - chr1_4:4298630-4298649 None:intergenic 45.0%
TATTCCTACCAGGGTTCTTC+AGG + chr1_4:4298786-4298805 Msa0144780:intron 45.0%
ATTCCTACCAGGGTTCTTCA+GGG + chr1_4:4298787-4298806 Msa0144780:intron 45.0%
TATATTGCCCTGAAGAACCC+TGG - chr1_4:4298797-4298816 None:intergenic 45.0%
ACAAATGCTTCTTCCAGGGA+AGG - chr1_4:4298960-4298979 None:intergenic 45.0%
CCTTAGCATACCTGCAGATT+AGG - chr1_4:4299863-4299882 None:intergenic 45.0%
CCTAATCTGCAGGTATGCTA+AGG + chr1_4:4299860-4299879 Msa0144780:intron 45.0%
TACTCTCCAACACCAACATG+GGG - chr1_4:4299909-4299928 None:intergenic 45.0%
GCCGGTGAATGATATATCTG+TGG - chr1_4:4300027-4300046 None:intergenic 45.0%
CTAAAGAGTCCGCCAAGTAA+AGG - chr1_4:4300127-4300146 None:intergenic 45.0%
!! ACTTGGCGGACTCTTTAGAA+TGG + chr1_4:4300129-4300148 Msa0144780:CDS 45.0%
TGTCAGGGGTTATGTGCAAA+AGG + chr1_4:4300273-4300292 Msa0144780:CDS 45.0%
TGCACCATTCAAGAGGTAGA+AGG - chr1_4:4300354-4300373 None:intergenic 45.0%
AACACACTGCACCATTCAAG+AGG - chr1_4:4300361-4300380 None:intergenic 45.0%
!! GCAGTGTGTTGATAATGGGA+AGG + chr1_4:4300371-4300390 Msa0144780:intron 45.0%
! CACTTGCTACTGGTAATTGG+GGG + chr1_4:4300451-4300470 Msa0144780:CDS 45.0%
! ACTCGTTGTGTTTCTGCTTC+AGG + chr1_4:4300590-4300609 Msa0144780:intron 45.0%
AGGACGTGAAGGTAATTGCT+TGG + chr1_4:4300674-4300693 Msa0144780:intron 45.0%
GAAAGATTGAAGTCTGGGTC+AGG - chr1_4:4300715-4300734 None:intergenic 45.0%
GGAGGGAAAGATTGAAGTCT+GGG - chr1_4:4300720-4300739 None:intergenic 45.0%
AGGAGGGAAAGATTGAAGTC+TGG - chr1_4:4300721-4300740 None:intergenic 45.0%
GCAACAATGCACAAAGAGGA+GGG - chr1_4:4300737-4300756 None:intergenic 45.0%
TGCAACAATGCACAAAGAGG+AGG - chr1_4:4300738-4300757 None:intergenic 45.0%
ATAAATTGGCACTAGGGGTG+TGG + chr1_4:4300772-4300791 Msa0144780:intron 45.0%
ACAATGGGGAATGATGTGTC+CGG + chr1_4:4301242-4301261 Msa0144780:CDS 45.0%
TGGGCTATTATTTAGGCCTG+TGG + chr1_4:4301368-4301387 Msa0144780:intron 45.0%
CATTGAGAAAGCTGAGACGT+CGG + chr1_4:4301671-4301690 Msa0144780:CDS 45.0%
ATTGAGAAAGCTGAGACGTC+GGG + chr1_4:4301672-4301691 Msa0144780:CDS 45.0%
CATCTGACTTTGTTGGGACT+TGG - chr1_4:4302191-4302210 None:intergenic 45.0%
AGTCCCAACAAAGTCAGATG+TGG + chr1_4:4302191-4302210 Msa0144780:intron 45.0%
TCCGGTGATTCCTGAAGAAA+TGG - chr1_4:4302589-4302608 None:intergenic 45.0%
ATGGCATGATCTTGTGTCCA+AGG + chr1_4:4302618-4302637 Msa0144780:CDS 45.0%
TGGCATGATCTTGTGTCCAA+GGG + chr1_4:4302619-4302638 Msa0144780:CDS 45.0%
! CACCCAAAATCAGTGATGGA+TGG - chr1_4:4302882-4302901 None:intergenic 45.0%
GTGGTCAGGAAATGGTATGA+TGG - chr1_4:4302914-4302933 None:intergenic 45.0%
ACCATTTCCTGACCACAATC+AGG + chr1_4:4302918-4302937 Msa0144780:CDS 45.0%
ACCTGATTGTGGTCAGGAAA+TGG - chr1_4:4302922-4302941 None:intergenic 45.0%
GCAGACTGATACGTATTACG+AGG - chr1_4:4303035-4303054 None:intergenic 45.0%
TCAGTCTGCTATGGGAAAAC+AGG + chr1_4:4303046-4303065 Msa0144780:CDS 45.0%
TGCTATGGGAAAACAGGCAA+TGG + chr1_4:4303052-4303071 Msa0144780:CDS 45.0%
GCTATGGGAAAACAGGCAAT+GGG + chr1_4:4303053-4303072 Msa0144780:CDS 45.0%
ATGGCATTCTATGGCACAAG+AGG - chr1_4:4303369-4303388 None:intergenic 45.0%
TGTGCCATAGAATGCCATTG+TGG + chr1_4:4303371-4303390 Msa0144780:intron 45.0%
ATGGCCACAATGGCATTCTA+TGG - chr1_4:4303378-4303397 None:intergenic 45.0%
! AGCCACGGTCTATTGATGAT+TGG - chr1_4:4303446-4303465 None:intergenic 45.0%
CAATAGACCGTGGCTTCTTT+CGG + chr1_4:4303451-4303470 Msa0144780:CDS 45.0%
ATAGAGACCGAAAGAAGCCA+CGG - chr1_4:4303461-4303480 None:intergenic 45.0%
!! CAAAGAAGATTTTGGTCGGC+CGG + chr1_4:4303618-4303637 Msa0144780:CDS 45.0%
TGTTGCTCTTCCTGAGATAG+AGG - chr1_4:4303920-4303939 None:intergenic 45.0%
CTATCTCAGGAAGAGCAACA+AGG + chr1_4:4303920-4303939 Msa0144780:CDS 45.0%
CTGTTGACCACAAATGCTGA+TGG + chr1_4:4304220-4304239 Msa0144780:CDS 45.0%
TCTCAACCCATCAGCATTTG+TGG - chr1_4:4304230-4304249 None:intergenic 45.0%
AGTAGTAGACACGGTCAGAA+GGG + chr1_4:4304304-4304323 Msa0144780:CDS 45.0%
ATACACAAGAAGACATGCCC+TGG + chr1_4:4304344-4304363 Msa0144780:CDS 45.0%
TATCGAGTGTATCATGGGGA+AGG + chr1_4:4304441-4304460 Msa0144780:CDS 45.0%
! CATCTCCTTCTTTTCCCATG+TGG - chr1_4:4304474-4304493 None:intergenic 45.0%
GCCAGTTGTCCCTATTTAAG+TGG - chr1_4:4304648-4304667 None:intergenic 45.0%
ATGCACTCTACCAGTACACA+AGG + chr1_4:4304675-4304694 Msa0144780:intron 45.0%
AAATGTGGGTACCAAATGCG+TGG + chr1_4:4304972-4304991 Msa0144780:CDS 45.0%
! TTTGGTAATAGGTAGGCCCA+AGG - chr1_4:4305052-4305071 None:intergenic 45.0%
TTGGGCCTACCTATTACCAA+AGG + chr1_4:4305051-4305070 Msa0144780:CDS 45.0%
GATGACAAGATCCATTCTCG+TGG + chr1_4:4305089-4305108 Msa0144780:CDS 45.0%
TGCCTTGTAAGAATCTGCAC+AGG - chr1_4:4305122-4305141 None:intergenic 45.0%
!! AGGTCTTCGATTTGGAGAGA+TGG + chr1_4:4305169-4305188 Msa0144780:CDS 45.0%
CGTGATTGCATGATTGCTCA+TGG + chr1_4:4305194-4305213 Msa0144780:CDS 45.0%
CTTCCAAGAGCTAATGGCTA+TGG + chr1_4:4305507-4305526 Msa0144780:CDS 45.0%
CACCCAAACAAAACGCATTC+AGG - chr1_4:4305969-4305988 None:intergenic 45.0%
!! TAAATTAATTATGAATAAAT+TGG + chr1_4:4300758-4300777 Msa0144780:intron 5.0%
CGTCTTCCTCTTCCATTTGC+TGG - chr1_4:4296286-4296305 None:intergenic 50.0%
CACAGCCCAAGCATCTTCTT+GGG - chr1_4:4296324-4296343 None:intergenic 50.0%
TCACAGCCCAAGCATCTTCT+TGG - chr1_4:4296325-4296344 None:intergenic 50.0%
CTATCTCCTGCATGGTGTTC+TGG - chr1_4:4296412-4296431 None:intergenic 50.0%
CCCGAATCTCAGCATAATCC+TGG + chr1_4:4296461-4296480 Msa0144780:CDS 50.0%
! GAAAGGGCATGATGGTGAAG+AGG + chr1_4:4297615-4297634 Msa0144780:CDS 50.0%
TGCCACAATTAGGAGGCTAG+GGG - chr1_4:4297737-4297756 None:intergenic 50.0%
GAGAAGGATTTGACCGAGCT+TGG + chr1_4:4298432-4298451 Msa0144780:CDS 50.0%
ATACGGACACTCTCCAAGCT+CGG - chr1_4:4298448-4298467 None:intergenic 50.0%
!! GGAGAGTGTCCGTATGATCA+AGG + chr1_4:4298453-4298472 Msa0144780:CDS 50.0%
GAGTGTCCGTATGATCAAGG+AGG + chr1_4:4298456-4298475 Msa0144780:CDS 50.0%
CGCACAAACATAGTGCTAGG+TGG - chr1_4:4298627-4298646 None:intergenic 50.0%
TGTTTGTGCGCATGCTCTCT+CGG + chr1_4:4298637-4298656 Msa0144780:CDS 50.0%
ACTCGAATGAAGGCCCAGTT+TGG + chr1_4:4299163-4299182 Msa0144780:intron 50.0%
!!! GGGGAAGCATCTCCTTTTGA+AGG - chr1_4:4299890-4299909 None:intergenic 50.0%
AAGGAGATGCTTCCCCATGT+TGG + chr1_4:4299894-4299913 Msa0144780:CDS 50.0%
ATGCTTCCCCATGTTGGTGT+TGG + chr1_4:4299900-4299919 Msa0144780:CDS 50.0%
TGGAAATAAGAGGCTGGACC+TGG + chr1_4:4300096-4300115 Msa0144780:CDS 50.0%
! TACTAGAGCTGGAGTGTCAC+AGG + chr1_4:4300491-4300510 Msa0144780:CDS 50.0%
! CTAGGGGTGTGGTAAAAACC+TGG + chr1_4:4300783-4300802 Msa0144780:intron 50.0%
! GTATCAACTACGGGAGTGCA+TGG - chr1_4:4301083-4301102 None:intergenic 50.0%
! TGTCCTTCTGGTGTTTCTGC+CGG - chr1_4:4301264-4301283 None:intergenic 50.0%
CAGATTCTTCACCAGTCCAC+AGG - chr1_4:4301387-4301406 None:intergenic 50.0%
!! CTGTGGACTGGTGAAGAATC+TGG + chr1_4:4301385-4301404 Msa0144780:CDS 50.0%
TCATCGCGACCCTGATATGT+TGG + chr1_4:4301642-4301661 Msa0144780:CDS 50.0%
! GCGACCCTGATATGTTGGTT+AGG + chr1_4:4301647-4301666 Msa0144780:CDS 50.0%
CTGACTTTGTTGGGACTTGG+AGG - chr1_4:4302188-4302207 None:intergenic 50.0%
!! TGATGGCTTTGATGTCGTGC+AGG + chr1_4:4302336-4302355 Msa0144780:intron 50.0%
CTTCAGGAATCACCGGAAGA+TGG + chr1_4:4302592-4302611 Msa0144780:intron 50.0%
!! AATCACCGGAAGATGGTGGA+TGG + chr1_4:4302599-4302618 Msa0144780:CDS 50.0%
TCATGCCATCCACCATCTTC+CGG - chr1_4:4302607-4302626 None:intergenic 50.0%
! GTAGTGACCAGTGGCTTTTG+AGG - chr1_4:4303230-4303249 None:intergenic 50.0%
! CATTTTCGTCAACTCCCTGC+TGG + chr1_4:4303269-4303288 Msa0144780:CDS 50.0%
!! ACCATGGTGTTGGCTCTATC+CGG - chr1_4:4303640-4303659 None:intergenic 50.0%
!!! GTGTTGTTTTGCAGGGCATG+AGG + chr1_4:4303716-4303735 Msa0144780:intron 50.0%
!! AAACAGGGCACAAGAGTGTC+TGG + chr1_4:4303866-4303885 Msa0144780:intron 50.0%
CTCTTCCTGAGATAGAGGAG+TGG - chr1_4:4303915-4303934 None:intergenic 50.0%
CAGTAGTAGACACGGTCAGA+AGG + chr1_4:4304303-4304322 Msa0144780:CDS 50.0%
GTAGTAGACACGGTCAGAAG+GGG + chr1_4:4304305-4304324 Msa0144780:CDS 50.0%
GTGATGCCTTCTACAGTCCA+GGG - chr1_4:4304364-4304383 None:intergenic 50.0%
AAGATCCATTCTCGTGGACG+AGG + chr1_4:4305095-4305114 Msa0144780:CDS 50.0%
AGATCCATTCTCGTGGACGA+GGG + chr1_4:4305096-4305115 Msa0144780:CDS 50.0%
GGCCTGTGCAGATTCTTACA+AGG + chr1_4:4305117-4305136 Msa0144780:CDS 50.0%
TCTTACAAGGCAACCTGCTG+AGG + chr1_4:4305130-4305149 Msa0144780:CDS 50.0%
CTTACAAGGCAACCTGCTGA+GGG + chr1_4:4305131-4305150 Msa0144780:CDS 50.0%
TTACAAGGCAACCTGCTGAG+GGG + chr1_4:4305132-4305151 Msa0144780:CDS 50.0%
! CGTGATGGAGGTCTTCGATT+TGG + chr1_4:4305161-4305180 Msa0144780:CDS 50.0%
AAGTCCATGGTGTTCTCTCC+TGG + chr1_4:4305409-4305428 Msa0144780:intron 50.0%
GCTGCTCTTCCAAGAGCTAA+TGG + chr1_4:4305501-4305520 Msa0144780:CDS 50.0%
! TGGCCATAGCCATTAGCTCT+TGG - chr1_4:4305513-4305532 None:intergenic 50.0%
ACGAGAGGAAGCAGTCAACA+TGG - chr1_4:4305635-4305654 None:intergenic 50.0%
GAACGTGGATCACACACACA+TGG + chr1_4:4305655-4305674 Msa0144780:three_prime_UTR 50.0%
GATGAGGCTACTGGGTTAAG+AGG - chr1_4:4305844-4305863 None:intergenic 50.0%
GAGGTAGTGATGAGGCTACT+GGG - chr1_4:4305852-4305871 None:intergenic 50.0%
TAGGAAGCGAGGTAGTGATG+AGG - chr1_4:4305860-4305879 None:intergenic 50.0%
CAGATGCGATATAGGAAGCG+AGG - chr1_4:4305871-4305890 None:intergenic 50.0%
CTCGCTTCCTATATCGCATC+TGG + chr1_4:4305869-4305888 Msa0144780:three_prime_UTR 50.0%
CCTCAGCGAAATCGGACTGA+TGG - chr1_4:4296487-4296506 None:intergenic 55.0%
CCATCAGTCCGATTTCGCTG+AGG + chr1_4:4296484-4296503 Msa0144780:CDS 55.0%
CACAATTAGGAGGCTAGGGG+CGG - chr1_4:4297734-4297753 None:intergenic 55.0%
TGTGGGTGAAGTTCGGTCCA+TGG + chr1_4:4298584-4298603 Msa0144780:CDS 55.0%
GTTTGTGCGCATGCTCTCTC+GGG + chr1_4:4298638-4298657 Msa0144780:CDS 55.0%
!! TCTCTCGGGCTAGTGCCAAA+GGG + chr1_4:4298652-4298671 Msa0144780:CDS 55.0%
TTGCCCTGAAGAACCCTGGT+AGG - chr1_4:4298793-4298812 None:intergenic 55.0%
ATTGGGGTTTGTCGCCGACA+AGG + chr1_4:4298875-4298894 Msa0144780:CDS 55.0%
CAAGTGCGCACAGAAGTAGC+CGG - chr1_4:4300045-4300064 None:intergenic 55.0%
GGCTACTTCTGTGCGCACTT+GGG + chr1_4:4300044-4300063 Msa0144780:CDS 55.0%
TACTTCTGTGCGCACTTGGG+CGG + chr1_4:4300047-4300066 Msa0144780:CDS 55.0%
GCGGAGGGCTGAAGATGATA+GGG + chr1_4:4300066-4300085 Msa0144780:CDS 55.0%
AATAAGAGGCTGGACCTGGC+AGG + chr1_4:4300100-4300119 Msa0144780:CDS 55.0%
GACCTGGCAGGTCCTTTACT+TGG + chr1_4:4300112-4300131 Msa0144780:CDS 55.0%
CTGGCAGGTCCTTTACTTGG+CGG + chr1_4:4300115-4300134 Msa0144780:CDS 55.0%
TTGGGGGCAAGCAAATGCTG+CGG + chr1_4:4300467-4300486 Msa0144780:CDS 55.0%
AATGCTGCGGGTACTAGAGC+TGG + chr1_4:4300480-4300499 Msa0144780:CDS 55.0%
TGTCCGGCAGAAACACCAGA+AGG + chr1_4:4301258-4301277 Msa0144780:CDS 55.0%
CAGGAATCACCGGAAGATGG+TGG + chr1_4:4302595-4302614 Msa0144780:intron 55.0%
GGGACTGATTGCACCACCAA+AGG - chr1_4:4303013-4303032 None:intergenic 55.0%
ATGGCTCTCGTAGTGACCAG+TGG - chr1_4:4303239-4303258 None:intergenic 55.0%
ACTGGTCACTACGAGAGCCA+TGG + chr1_4:4303238-4303257 Msa0144780:CDS 55.0%
! GTTTTGCAGGGCATGAGGCA+TGG + chr1_4:4303721-4303740 Msa0144780:intron 55.0%
GACATGCCCTGGACTGTAGA+AGG + chr1_4:4304355-4304374 Msa0144780:CDS 55.0%
GGTGATGCCTTCTACAGTCC+AGG - chr1_4:4304365-4304384 None:intergenic 55.0%
CGAGTGTATCATGGGGAAGG+TGG + chr1_4:4304444-4304463 Msa0144780:CDS 55.0%
GCTGCCCACATGGGAAAAGA+AGG + chr1_4:4304466-4304485 Msa0144780:CDS 55.0%
TGGAGCCGCTCACTTCCTAA+AGG + chr1_4:4305214-4305233 Msa0144780:CDS 55.0%
ATCCACAGCGTTCACACACG+TGG - chr1_4:4305274-4305293 None:intergenic 55.0%
AGCACCAGGAGAGAACACCA+TGG - chr1_4:4305416-4305435 None:intergenic 55.0%
ACTGCTTCCTCTCGTGAACG+TGG + chr1_4:4305640-4305659 Msa0144780:three_prime_UTR 55.0%
GTGTGATCCACGTTCACGAG+AGG - chr1_4:4305650-4305669 None:intergenic 55.0%
CGAGGTAGTGATGAGGCTAC+TGG - chr1_4:4305853-4305872 None:intergenic 55.0%
GCGAAATCGGACTGATGGCC+AGG - chr1_4:4296482-4296501 None:intergenic 60.0%
CGCCCCTAGCCTCCTAATTG+TGG + chr1_4:4297732-4297751 Msa0144780:intron 60.0%
GCAGCCCTCACCTTACAAGC+TGG + chr1_4:4297860-4297879 Msa0144780:intron 60.0%
!! CTCTCTCGGGCTAGTGCCAA+AGG + chr1_4:4298651-4298670 Msa0144780:CDS 60.0%
!! CTCTCGGGCTAGTGCCAAAG+GGG + chr1_4:4298653-4298672 Msa0144780:CDS 60.0%
GGAGTTGCTTCGTCCTTCCC+TGG + chr1_4:4298944-4298963 Msa0144780:CDS 60.0%
CGGCTACTTCTGTGCGCACT+TGG + chr1_4:4300043-4300062 Msa0144780:CDS 60.0%
GGCGGAGGGCTGAAGATGAT+AGG + chr1_4:4300065-4300084 Msa0144780:CDS 60.0%
CGCCAAGTAAAGGACCTGCC+AGG - chr1_4:4300117-4300136 None:intergenic 60.0%
TGGGGGCAAGCAAATGCTGC+GGG + chr1_4:4300468-4300487 Msa0144780:CDS 60.0%
GTAGCTTGGGGAATCACCGC+AGG - chr1_4:4301589-4301608 None:intergenic 60.0%
GCCGGATAGAGCCAACACCA+TGG + chr1_4:4303636-4303655 Msa0144780:CDS 60.0%
!! GGGCACAAGAGTGTCTGGTG+AGG + chr1_4:4303871-4303890 Msa0144780:intron 60.0%
CACGGTCAGAAGGGGACTGT+TGG + chr1_4:4304313-4304332 Msa0144780:CDS 60.0%
GTCCACGTGTGTGAACGCTG+TGG + chr1_4:4305269-4305288 Msa0144780:CDS 60.0%
TTCTGTGCGCACTTGGGCGG+AGG + chr1_4:4300050-4300069 Msa0144780:CDS 65.0%
TCTGTGCGCACTTGGGCGGA+GGG + chr1_4:4300051-4300070 Msa0144780:CDS 65.0%
GGGAAGGTGGCTGCCCACAT+GGG + chr1_4:4304457-4304476 Msa0144780:CDS 65.0%
CAGGCCCTCGTCCACGAGAA+TGG - chr1_4:4305103-4305122 None:intergenic 65.0%
CAAGGCAACCTGCTGAGGGG+CGG + chr1_4:4305135-4305154 Msa0144780:CDS 65.0%
GGGGAAGGTGGCTGCCCACA+TGG + chr1_4:4304456-4304475 Msa0144780:CDS 70.0%
TCACGTGACCGCCCCTCAGC+AGG - chr1_4:4305146-4305165 None:intergenic 70.0%
GCTGAGGGGCGGTCACGTGA+TGG + chr1_4:4305146-4305165 Msa0144780:CDS 70.0%
GAGGGGCGGTCACGTGATGG+AGG + chr1_4:4305149-4305168 Msa0144780:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4296112 4306141 4296112 ID=Msa0144780;Name=Msa0144780
chr1_4 mRNA 4296112 4306141 4296112 ID=Msa0144780-mRNA-1;Parent=Msa0144780;Name=Msa0144780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136|1|1|1|1|1|25|544|1195
chr1_4 exon 4296112 4296505 4296112 ID=Msa0144780-mRNA-1:exon:1784;Parent=Msa0144780-mRNA-1
chr1_4 exon 4297457 4297678 4297457 ID=Msa0144780-mRNA-1:exon:1785;Parent=Msa0144780-mRNA-1
chr1_4 exon 4298384 4298674 4298384 ID=Msa0144780-mRNA-1:exon:1786;Parent=Msa0144780-mRNA-1
chr1_4 exon 4298798 4298995 4298798 ID=Msa0144780-mRNA-1:exon:1787;Parent=Msa0144780-mRNA-1
chr1_4 exon 4299721 4299785 4299721 ID=Msa0144780-mRNA-1:exon:1788;Parent=Msa0144780-mRNA-1
chr1_4 exon 4299872 4299958 4299872 ID=Msa0144780-mRNA-1:exon:1789;Parent=Msa0144780-mRNA-1
chr1_4 exon 4300030 4300150 4300030 ID=Msa0144780-mRNA-1:exon:1790;Parent=Msa0144780-mRNA-1
chr1_4 exon 4300250 4300294 4300250 ID=Msa0144780-mRNA-1:exon:1791;Parent=Msa0144780-mRNA-1
chr1_4 exon 4300375 4300512 4300375 ID=Msa0144780-mRNA-1:exon:1792;Parent=Msa0144780-mRNA-1
chr1_4 exon 4300612 4300684 4300612 ID=Msa0144780-mRNA-1:exon:1793;Parent=Msa0144780-mRNA-1
chr1_4 exon 4301208 4301284 4301208 ID=Msa0144780-mRNA-1:exon:1794;Parent=Msa0144780-mRNA-1
chr1_4 exon 4301383 4301490 4301383 ID=Msa0144780-mRNA-1:exon:1795;Parent=Msa0144780-mRNA-1
chr1_4 exon 4301577 4301693 4301577 ID=Msa0144780-mRNA-1:exon:1796;Parent=Msa0144780-mRNA-1
chr1_4 exon 4302358 4302513 4302358 ID=Msa0144780-mRNA-1:exon:1797;Parent=Msa0144780-mRNA-1
chr1_4 exon 4302598 4302702 4302598 ID=Msa0144780-mRNA-1:exon:1798;Parent=Msa0144780-mRNA-1
chr1_4 exon 4302814 4302939 4302814 ID=Msa0144780-mRNA-1:exon:1799;Parent=Msa0144780-mRNA-1
chr1_4 exon 4303029 4303106 4303029 ID=Msa0144780-mRNA-1:exon:1800;Parent=Msa0144780-mRNA-1
chr1_4 exon 4303200 4303295 4303200 ID=Msa0144780-mRNA-1:exon:1801;Parent=Msa0144780-mRNA-1
chr1_4 exon 4303381 4303496 4303381 ID=Msa0144780-mRNA-1:exon:1802;Parent=Msa0144780-mRNA-1
chr1_4 exon 4303588 4303657 4303588 ID=Msa0144780-mRNA-1:exon:1803;Parent=Msa0144780-mRNA-1
chr1_4 exon 4303730 4303783 4303730 ID=Msa0144780-mRNA-1:exon:1804;Parent=Msa0144780-mRNA-1
chr1_4 exon 4303872 4304015 4303872 ID=Msa0144780-mRNA-1:exon:1805;Parent=Msa0144780-mRNA-1
chr1_4 exon 4304217 4304516 4304217 ID=Msa0144780-mRNA-1:exon:1806;Parent=Msa0144780-mRNA-1
chr1_4 exon 4304945 4305367 4304945 ID=Msa0144780-mRNA-1:exon:1807;Parent=Msa0144780-mRNA-1
chr1_4 exon 4305478 4306141 4305478 ID=Msa0144780-mRNA-1:exon:1808;Parent=Msa0144780-mRNA-1
chr1_4 five_prime_UTR 4296112 4296247 4296112 ID=Msa0144780-mRNA-1:five_prime_utr;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4296248 4296505 4296248 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4297457 4297678 4297457 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4298384 4298674 4298384 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4298798 4298995 4298798 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4299721 4299785 4299721 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4299872 4299958 4299872 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4300030 4300150 4300030 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4300250 4300294 4300250 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4300375 4300512 4300375 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4300612 4300684 4300612 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4301208 4301284 4301208 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4301383 4301490 4301383 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4301577 4301693 4301577 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4302358 4302513 4302358 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4302598 4302702 4302598 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4302814 4302939 4302814 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4303029 4303106 4303029 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4303200 4303295 4303200 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4303381 4303496 4303381 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4303588 4303657 4303588 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4303730 4303783 4303730 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4303872 4304015 4303872 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4304217 4304516 4304217 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4304945 4305367 4304945 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 CDS 4305478 4305597 4305478 ID=Msa0144780-mRNA-1:cds;Parent=Msa0144780-mRNA-1
chr1_4 three_prime_UTR 4305598 4306141 4305598 ID=Msa0144780-mRNA-1:three_prime_utr;Parent=Msa0144780-mRNA-1
Gene Sequence

>Msa0144780

ATGATGATGGATTTGGAAGAAGAAAACGAATTCGACCAGCAAATGGAAGAGGAAGACGATGAGGAAGAAATCACCCAAGAAGATGCTTGGGCTGTGATCTCTGCTTATTTTGAAGAAAAAGGACTTGTCCGTCAACAGCTTGATTCCTTCGATGAATTCATCCAGAACACCATGCAGGAGATAGTTGATGAATCCGCTGATATCGAAATTCGACCCGAATCTCAGCATAATCCTGGCCATCAGTCCGATTTCGCTGAGACGATTTATAAGATAAGCTTCGGTCAGATTTATTTGAGTAAGCCAATGATGACGGAATCTGATGGAGAAACTGCTACATTGTTTCCTAAAGCTGCTAGGCTTAGGAATCTGACGTATTCAGCTCCTTTGTATGTTGATGTTTCTAAGAGGGTCATTAAGAAAGGGCATGATGGTGAAGAGGTCACTGAGACTCAAGATTTCACCAAAGTTTTCATTGGCAAGGTTCCTATTATGCTTCGGTCTAGTTATTGCACACTATATCAGAATTCAGAGAAGGATTTGACCGAGCTTGGAGAGTGTCCGTATGATCAAGGAGGTTATTTCATTATTAATGGCAGTGAGAAGGTTCTTATTGCTCAGGAGAAGATGAGCACCAATCATGTCTATGTCTTTAAGAAGAGGCAACCTAACAAGTATGCTTATGTGGGTGAAGTTCGGTCCATGGCAGAGTCACAAAACAGACCACCTAGCACTATGTTTGTGCGCATGCTCTCTCGGGCTAGTGCCAAAGGGGGTTCTTCAGGGCAATATATACGTGCTACTCTTCCTTACATTCGAACTGAAATTCCTATCATTATTGTGTTTCGGGCATTGGGGTTTGTCGCCGACAAGGATATCCTTGAACATATATGCTATGACTTTGCGGATACTCAAATGATGGAGTTGCTTCGTCCTTCCCTGGAAGAAGCATTTGTGATACAAAATCAACAGGTTGCACTTGATTATATTGGAAAAAGAGGATCAACTGTAGGTGTAACCAAGGAAAAGAGAATTAAGTATGCTAAGGACATCCTTCAAAAGGAGATGCTTCCCCATGTTGGTGTTGGAGAGTATTGCGAGACTAAAAAAGCATACTATTTTGGATATATCATTCACCGGCTACTTCTGTGCGCACTTGGGCGGAGGGCTGAAGATGATAGGGATCATTATGGAAATAAGAGGCTGGACCTGGCAGGTCCTTTACTTGGCGGACTCTTTAGAATGCTATTCAGAAAGTTGACTAGAGATGTCAGGGGTTATGTGCAAAAGTGTGTTGATAATGGGAAGGATGTTAACCTGCAATTTGCTATCAAAGCAAAAACCATCACAAGTGGACTTAAGTACTCACTTGCTACTGGTAATTGGGGGCAAGCAAATGCTGCGGGTACTAGAGCTGGAGTGTCACAGGTGCTAAATCGTTTAACCTATGCTTCCACTTTATCACACTTGCGAAGATTGAATTCTCCTATAGGACGTGAAGGAAAGTTGGCCAAACCAAGACAGCTGCATAATTCACAATGGGGAATGATGTGTCCGGCAGAAACACCAGAAGGACAAGCCTGTGGACTGGTGAAGAATCTGGCCTTGATGGTATACATTACAGTTGGTTCAGCAGCATATCCTATTCTGGAGTTTTTAGAAGAATGGGGCACAGAAAATTTTGAGGAAATTTCTCCTGCGGTGATTCCCCAAGCTACAAAAATTTTCGTAAATGGTTGCTGGATGGGTATTCATCGCGACCCTGATATGTTGGTTAGGACATTGAGAAAGCTGAGACGTCGGGTTGATGTTAATACTGAAGTTGGGGTTGTTAGAGATATCCGTCTTAAAGAACTGCGCATATATACAGATTATGGTCGCTGCAGTCGTCCTTTATTCATTGTGGATAAACAAAGGCTTCTCATAAAGAAGAAAGACATTCATTCTTTGCAGCAAAGGGAATCACCGGAAGATGGTGGATGGCATGATCTTGTGTCCAAGGGCTTTATAGAATATATCGACACAGAAGAGGAAGAGACTACTATGATTTCCATGACAATTAATGATCTTGTACAAGCAAGGCTGAATCCAGAAGAAGCATATTCTGATACTTACACTCACTGTGAAATCCATCCATCACTGATTTTGGGTGTATGTGCGTCCATCATACCATTTCCTGACCACAATCAGTCCCCTCGTAATACGTATCAGTCTGCTATGGGAAAACAGGCAATGGGAATTTATGTTACCAACTACCAGTTTCGAATGGATACCTTGGCGTATGTTTTATATTATCCTCAAAAGCCACTGGTCACTACGAGAGCCATGGAGCATCTTCATTTTCGTCAACTCCCTGCTGGAATTAATGCCATTGTGGCCATTTCATGTTATTCTGGTTATAATCAAGAAGATTCTGTCATCATGAACCAATCATCAATAGACCGTGGCTTCTTTCGGTCTCTATTTTTCCGTTCATATAGAGATGAAGAGAAAAAAATGGGAACTCTTGTCAAAGAAGATTTTGGTCGGCCGGATAGAGCCAACACCATGGGCATGAGGCATGGTTCTTATGATAAATTGGATGATGATGGTCTTGCTCCACCTGGCACAAGAGTGTCTGGTGAGGATGTTATTATTGGAAAAACCACTCCTCTATCTCAGGAAGAGCAACAAGGACAAGCTGCTCGTTACTCAAAACGTGATCACAGCATAAGTTTACGCCATAGTGAAACTGGAATAGTAGATCAAGTTCTGTTGACCACAAATGCTGATGGGTTGAGATTCGTGAAAGTAAGGGTGAGATCTGTTCGAATACCACAGATTGGTGACAAATTCAGTAGTAGACACGGTCAGAAGGGGACTGTTGGTATGACTTATACACAAGAAGACATGCCCTGGACTGTAGAAGGCATCACCCCTGATATTATTGTCAATCCACATGCTATACCTTCTCGAATGACAATTGGTCAGCTTATCGAGTGTATCATGGGGAAGGTGGCTGCCCACATGGGAAAAGAAGGAGATGCTACTCCTTTTACAGATGTTACTGTGGATAATATCAGCAAAGCTTTACACAAATGTGGGTACCAAATGCGTGGTTTTGAGACAATGTACAATGGTCATACAGGAAGGCGTCTCAGTGCAATGATTTTCCTTGGGCCTACCTATTACCAAAGGTTGAAGCATATGGTTGATGACAAGATCCATTCTCGTGGACGAGGGCCTGTGCAGATTCTTACAAGGCAACCTGCTGAGGGGCGGTCACGTGATGGAGGTCTTCGATTTGGAGAGATGGAACGTGATTGCATGATTGCTCATGGAGCCGCTCACTTCCTAAAGGAAAGACTGTTTGATCAAAGTGATGCATATAGAGTCCACGTGTGTGAACGCTGTGGATTGATAGCTATTGCAAATCTGAAGAAGAATTCTTTTGAGTGTAGGGGCTGCAAGAACAAAACTGACATTGTTCAGGTTTATATTCCTTATGCTTGTAAGCTGCTCTTCCAAGAGCTAATGGCTATGGCCATAGCTCCAAGAATGCTTACTAAAGAGGTGAAAGCTATAAAAGACCAAAAGAAGAAAGGAGCCTGA
Protein sequence

>Msa0144780

MMMDLEEENEFDQQMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKGA*