AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544730 MtrunA17_Chr4g0040471 97.178 886 3 1 1 864 1 886 0.0 1757
Msa0544730 MtrunA17_Chr8g0392281 22.622 473 300 14 343 793 379 807 9.06e-15 79.0
Msa0544730 MtrunA17_Chr2g0311201 22.410 473 301 14 343 793 377 805 5.30e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544730 AT2G20580.1 81.271 897 129 5 1 864 1 891 0.0 1457
Msa0544730 AT4G28470.1 79.171 893 149 4 3 864 5 891 0.0 1432
Msa0544730 AT4G08140.1 80.000 70 14 0 51 120 2 71 2.47e-30 115
Msa0544730 AT1G04810.1 22.766 470 304 14 343 793 377 806 2.67e-14 77.8
Msa0544730 AT2G32730.1 22.766 470 304 14 343 793 377 806 3.07e-14 77.8

Find 228 sgRNAs with CRISPR-Local

Find 642 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATGGTGTCAGAAATT+TGG 0.163690 4_1:-33628719 Msa0544730:intron
GACTAGAATTGGTGCAATTA+TGG 0.180764 4_1:-33623256 Msa0544730:CDS
TTGACAAAACAAACTTTAAA+AGG 0.192273 4_1:-33628189 Msa0544730:CDS
GGCCTTGGTCTTCTTTATCT+TGG 0.200767 4_1:-33622912 Msa0544730:CDS
CATGCAGGTGCAAAATCTTT+TGG 0.202835 4_1:-33622469 Msa0544730:intron
AAAACCTCACCTGCTCATTC+TGG 0.227874 4_1:+33623208 None:intergenic
TAAAGGACAATCCAGATTAT+AGG 0.228060 4_1:-33621019 Msa0544730:CDS
ACCCCTGTTCTCCTGGCTGC+TGG 0.245592 4_1:-33621193 Msa0544730:CDS
GCTGGTGCTGGCGCCGTTGC+CGG 0.280560 4_1:+33629746 None:intergenic
TCTTCAAGTAGTGGTTCTTC+TGG 0.284064 4_1:-33623696 Msa0544730:CDS
AGCAATCATATTTACATTGA+TGG 0.285349 4_1:-33622985 Msa0544730:CDS
AAATACTATCAAAATGTAAA+AGG 0.288699 4_1:-33620919 Msa0544730:three_prime_UTR
GCCTTCACTGCAATTGCATT+GGG 0.289158 4_1:-33623047 Msa0544730:CDS
TGCCCAAGGTCTTGTACATT+TGG 0.290221 4_1:-33621735 Msa0544730:CDS
GCATTTGTTAATGCCGGATT+TGG 0.293129 4_1:-33623848 Msa0544730:CDS
GCGCCGTTGCCGGCGCGGTT+AGG 0.294433 4_1:+33629756 None:intergenic
TGTCATTGCTGGTGCATTAC+TGG 0.297812 4_1:-33623452 Msa0544730:CDS
CTAGGTTCAGAGGGAGATAT+TGG 0.298113 4_1:-33628925 Msa0544730:CDS
TCTTAGGCACATTTGCTTGA+TGG 0.300355 4_1:-33623935 Msa0544730:intron
TTCTCCTGGCTGCTGGGGAT+AGG 0.305991 4_1:-33621186 Msa0544730:CDS
TTCGTCATTGCAGAAGTATT+TGG 0.307151 4_1:-33629143 Msa0544730:intron
TATGGCGGAATCAGAGTTAA+AGG 0.315185 4_1:-33629243 Msa0544730:intron
CGTGCAGTCAGATGAAGATT+TGG 0.320246 4_1:-33629567 Msa0544730:intron
ATTTGATCAGGTCAATGTTA+TGG 0.321936 4_1:-33622089 Msa0544730:intron
AATGCAATTTGCAGTGCATT+TGG 0.325383 4_1:+33626673 None:intergenic
AAAGGACAATCCAGATTATA+GGG 0.325952 4_1:-33621018 Msa0544730:CDS
TTTGGCGGTGCCGCTGGTGC+TGG 0.327421 4_1:+33629734 None:intergenic
TCCCCAGCAGCCAGGAGAAC+AGG 0.334078 4_1:+33621190 None:intergenic
TGTTCTCTACTTCCTCGTTT+TGG 0.335578 4_1:-33621433 Msa0544730:CDS
TGTGAGTGTGTTAAATTAAA+AGG 0.336064 4_1:+33629891 None:intergenic
ATTGGTGCAATTATGGGATT+AGG 0.338723 4_1:-33623249 Msa0544730:CDS
CCCCTGTTCTCCTGGCTGCT+GGG 0.345055 4_1:-33621192 Msa0544730:CDS
CCCCTATCACCAATTCTTGA+AGG 0.345401 4_1:-33621053 Msa0544730:CDS
ACTAGAATTGGTGCAATTAT+GGG 0.345863 4_1:-33623255 Msa0544730:CDS
CTCCCTCAGCAGACATTGTA+AGG 0.346118 4_1:+33629098 None:intergenic
CAAATATCCTTCACTTAACT+TGG 0.350252 4_1:+33626102 None:intergenic
TGAAAGCCGGTGATTGTCTT+AGG 0.351647 4_1:+33621226 None:intergenic
ATTACAAAACCTTCAAGAAT+TGG 0.353080 4_1:+33621044 None:intergenic
TGCACCTTGTATATATCTTC+AGG 0.356157 4_1:+33626040 None:intergenic
GGCTGACATATTATCAGTAT+TGG 0.356961 4_1:-33629122 Msa0544730:CDS
GTTATCTCCTTGGGTCTAAT+AGG 0.358044 4_1:-33621930 Msa0544730:CDS
GCCTTGGTCTTCTTTATCTT+GGG 0.359647 4_1:-33622911 Msa0544730:CDS
GTTGCCGGCGCGGTTAGGTT+CGG 0.361415 4_1:+33629761 None:intergenic
GTAGCAATGGCTGAAGAATT+AGG 0.361899 4_1:-33622378 Msa0544730:CDS
GCCCAAGGTCTTGTACATTT+GGG 0.363986 4_1:-33621734 Msa0544730:CDS
TGACATGGTTATCATTACTA+TGG 0.373993 4_1:+33623470 None:intergenic
TGCCTTCACTGCAATTGCAT+TGG 0.375145 4_1:-33623048 Msa0544730:CDS
GAAGATAGTTCGACTAGAAT+TGG 0.377228 4_1:-33623267 Msa0544730:CDS
GACTAGTGCTGCTGCAAGTC+TGG 0.377954 4_1:-33623640 Msa0544730:intron
GCCTCTATCAGTGCCTGTTC+GGG 0.382032 4_1:-33621287 Msa0544730:CDS
TAAGGCATATTATGAAACTA+TGG 0.383151 4_1:-33629261 Msa0544730:CDS
ACAAACAATGCTCGAATTGC+CGG 0.384804 4_1:-33621900 Msa0544730:CDS
TCATGTGCCTATGCTGGAAC+TGG 0.385983 4_1:-33622592 Msa0544730:CDS
AGCCTCTATCAGTGCCTGTT+CGG 0.386811 4_1:-33621288 Msa0544730:CDS
TTGCCGGCGCGGTTAGGTTC+GGG 0.387598 4_1:+33629762 None:intergenic
CGAAGAACGAGAAGTGTTGC+AGG 0.387775 4_1:-33626140 Msa0544730:CDS
TTCGTCTTTGGCGGTGCCGC+TGG 0.390264 4_1:+33629728 None:intergenic
CGACTTCTCCCTCTTGGCCT+TGG 0.391180 4_1:-33622927 Msa0544730:CDS
CATGGGGACATGAGTATGTT+AGG 0.392382 4_1:-33628900 Msa0544730:intron
TCATTCTACCCCTGTTCTCC+TGG 0.393262 4_1:-33621200 Msa0544730:CDS
GTAGTGGTTCTTCTGGAAAC+TGG 0.395865 4_1:-33623689 Msa0544730:CDS
TTAGAACATCTTCTACAGTA+TGG 0.397139 4_1:-33622333 Msa0544730:CDS
TCTCCTGGCTGCTGGGGATA+GGG 0.401494 4_1:-33621185 Msa0544730:CDS
CATCACTCTTCCCTATAATC+TGG 0.405215 4_1:+33621008 None:intergenic
AACCTTCAAGAATTGGTGAT+AGG 0.407353 4_1:+33621051 None:intergenic
TTTCACGCTAAATCGAACTT+AGG 0.407501 4_1:-33629813 Msa0544730:five_prime_UTR
CTTGATGGCCGTGCAAGTGC+TGG 0.408444 4_1:-33623920 Msa0544730:CDS
TTGGAGAATTTAACAGATTG+AGG 0.416567 4_1:+33629928 None:intergenic
TCTTCTTTATCTTGGGAAGC+AGG 0.420669 4_1:-33622904 Msa0544730:intron
ACTGCTTGGCCAACCCGAAC+AGG 0.423439 4_1:+33621274 None:intergenic
GTTGTATGTTGAGAGGGTTC+AGG 0.424586 4_1:-33629525 Msa0544730:CDS
CGAGCAGTTCCTCTGGCACT+TGG 0.426143 4_1:-33622294 Msa0544730:CDS
ACAGGCAGCAGTTATCTCCT+TGG 0.429907 4_1:-33621940 Msa0544730:intron
CACCAAGGTCCTGCAGTCCT+TGG 0.430705 4_1:-33622411 Msa0544730:CDS
ACTGCAAATTGCATTGTTCA+TGG 0.433433 4_1:-33626665 Msa0544730:CDS
TGTTAATGCCGGATTTGGTC+AGG 0.436038 4_1:-33623843 Msa0544730:intron
TGCGGCAGCTTCGTCTTTGG+CGG 0.436686 4_1:+33629719 None:intergenic
GTTAATGCATTTGTTAATGC+CGG 0.439292 4_1:-33623854 Msa0544730:CDS
CGTAGAAACTTCAGTGGCTT+GGG 0.439539 4_1:+33629302 None:intergenic
CTCCCTCTGAACCTAGTAAT+CGG 0.440688 4_1:+33628932 None:intergenic
CTTACGCGACTTCTCCCTCT+TGG 0.441492 4_1:-33622933 Msa0544730:CDS
ATCATGGCTAAGTCTGCTTA+AGG 0.441554 4_1:+33622063 None:intergenic
GTGTCGATTAATTTGAAAGA+TGG 0.442501 4_1:-33620810 Msa0544730:three_prime_UTR
GAAGATCGAGAGCGAAGATC+TGG 0.445605 4_1:-33629691 Msa0544730:intron
AAACCTCACCTGCTCATTCT+GGG 0.446754 4_1:+33623209 None:intergenic
TGAAACATACACAAAATAGA+AGG 0.448647 4_1:+33621835 None:intergenic
AATGATAACCATGTCATTGC+TGG 0.449019 4_1:-33623463 Msa0544730:CDS
CAGGCAGCAGTTATCTCCTT+GGG 0.449890 4_1:-33621939 Msa0544730:CDS
GGCAACGGCGCCAGCACCAG+CGG 0.456358 4_1:-33629744 Msa0544730:CDS
TTCACGCTAAATCGAACTTA+GGG 0.456411 4_1:-33629812 Msa0544730:five_prime_UTR
GAAAGATGGTTTATTAATTG+TGG 0.457827 4_1:-33620796 Msa0544730:three_prime_UTR
AGCAGTAGACGTTGTTGGAC+AGG 0.459860 4_1:-33621257 Msa0544730:CDS
TCATTGTACCTGACCAAATC+CGG 0.459928 4_1:+33623835 None:intergenic
AGAGGGAGAAGTCGCGTAAG+AGG 0.462942 4_1:+33622936 None:intergenic
CTACTATCATGTGCCTATGC+TGG 0.463677 4_1:-33622598 Msa0544730:CDS
AATGTCTGCTGAGGGAGAAC+GGG 0.467324 4_1:-33629092 Msa0544730:intron
TTACTATGGGATGTTGACTC+TGG 0.470974 4_1:-33623517 Msa0544730:CDS
GCCACATTACGGTACTCTTA+AGG 0.471860 4_1:-33629279 Msa0544730:CDS
ATCAAAAGATCAACAGCCTC+TGG 0.472093 4_1:+33628336 None:intergenic
TCACACTTCCTCTTCTCCGA+TGG 0.473659 4_1:-33629787 Msa0544730:exon
TCCCAAATGTACAAGACCTT+GGG 0.474672 4_1:+33621733 None:intergenic
ATCACGTCAAGCGAAGCTTT+AGG 0.474727 4_1:+33623071 None:intergenic
ACCTTCAAGAATTGGTGATA+GGG 0.476467 4_1:+33621052 None:intergenic
CAGAGGGAGATATTGGTTCA+TGG 0.477824 4_1:-33628918 Msa0544730:CDS
AGTCTCAAATACCGATTACT+AGG 0.479190 4_1:-33628943 Msa0544730:CDS
TTTGGCTTTGAAGCAACAGC+TGG 0.479199 4_1:-33629549 Msa0544730:CDS
TGCTGGCGCCGTTGCCGGCG+CGG 0.483349 4_1:+33629751 None:intergenic
AGAGCAACCTTCTGCAACCC+GGG 0.485765 4_1:+33629494 None:intergenic
CCGTAGAAACTTCAGTGGCT+TGG 0.486666 4_1:+33629301 None:intergenic
AAGTTTCTACGGCCACATTA+CGG 0.488041 4_1:-33629290 Msa0544730:CDS
TTCCCAAATGTACAAGACCT+TGG 0.489170 4_1:+33621732 None:intergenic
CTGCCCTATCCCCAGCAGCC+AGG 0.494849 4_1:+33621182 None:intergenic
ATTAAAAGTCTTTGAAACTT+CGG 0.496334 4_1:+33622651 None:intergenic
AGAGGGAGATATTGGTTCAT+GGG 0.496959 4_1:-33628917 Msa0544730:CDS
GCCCAATGCAATTGCAGTGA+AGG 0.498300 4_1:+33623046 None:intergenic
TCCAATACTAGCATATCATC+TGG 0.498885 4_1:+33626733 None:intergenic
TATGGTGTCAGAAATTTGGC+TGG 0.499427 4_1:-33628715 Msa0544730:intron
TATTCGCCGAGCAGTTCCTC+TGG 0.500504 4_1:-33622301 Msa0544730:CDS
TGCAGTCCTTGGAATTGCTA+TGG 0.502997 4_1:-33622400 Msa0544730:CDS
CAATGTCTGCTGAGGGAGAA+CGG 0.504450 4_1:-33629093 Msa0544730:CDS
GTCATTGCTGGTGCATTACT+GGG 0.505397 4_1:-33623451 Msa0544730:CDS
ACACAATAGCTTTCATATCA+AGG 0.505784 4_1:+33621472 None:intergenic
GGTCTTGTACATTTGGGAAA+GGG 0.507186 4_1:-33621728 Msa0544730:CDS
GATCGGAGTGAGTCAGAGTT+GGG 0.508316 4_1:-33622963 Msa0544730:CDS
CCCTGTTCTCCTGGCTGCTG+GGG 0.508335 4_1:-33621191 Msa0544730:CDS
GGATTAGGAATTGCATATGC+TGG 0.510069 4_1:-33623234 Msa0544730:CDS
AAGAGCAACCTTCTGCAACC+CGG 0.510865 4_1:+33629493 None:intergenic
GATATGAAAGCTATTGTGTT+GGG 0.511246 4_1:-33621468 Msa0544730:CDS
TATATATCTTCAGGGGACTT+AGG 0.511864 4_1:+33626049 None:intergenic
GCACCTTGTATATATCTTCA+GGG 0.512615 4_1:+33626041 None:intergenic
ACCCGAACAGGCACTGATAG+AGG 0.514416 4_1:+33621286 None:intergenic
TGGCTTGGGCACTGAAGTCA+TGG 0.515550 4_1:+33629316 None:intergenic
GGATCGGAGTGAGTCAGAGT+TGG 0.515747 4_1:-33622964 Msa0544730:CDS
ACCAGATGATATGCTAGTAT+TGG 0.515944 4_1:-33626734 Msa0544730:CDS
TCATATTTACATTGATGGAT+CGG 0.517102 4_1:-33622980 Msa0544730:CDS
GCTTTAGGATCACTCAGAAT+AGG 0.517639 4_1:+33623086 None:intergenic
TGCATTGGGCTTGATTTACG+TGG 0.518309 4_1:-33623033 Msa0544730:CDS
CAACTTCTGAATCAGTATCA+TGG 0.519781 4_1:+33622047 None:intergenic
GAACCTAACCGCGCCGGCAA+CGG 0.523030 4_1:-33629759 Msa0544730:CDS
CTCCATGACTTCAATATCAC+GGG 0.523436 4_1:+33626072 None:intergenic
CTTTCAGTTACGATACAAGT+TGG 0.527671 4_1:-33623111 Msa0544730:intron
TCCTTGGGTCTAATAGGCGC+TGG 0.528692 4_1:-33621924 Msa0544730:CDS
CCCCAGCAGCCAGGAGAACA+GGG 0.529499 4_1:+33621191 None:intergenic
GCATCAGATTCTTCAAGTAG+TGG 0.529733 4_1:-33623705 Msa0544730:CDS
GTCCAACAACGTCTACTGCT+TGG 0.531076 4_1:+33621260 None:intergenic
AAAGAAGACCAAGGCCAAGA+GGG 0.534797 4_1:+33622919 None:intergenic
ATTGTTCATGGATAACCTGC+TGG 0.537779 4_1:-33626653 Msa0544730:intron
TGAAAGATTGCGAAGCATGC+CGG 0.538412 4_1:+33621881 None:intergenic
CACTTGCACCAGCACTTGCA+CGG 0.542212 4_1:+33623912 None:intergenic
AGGGTTCAGGATACTGACCC+CGG 0.543270 4_1:-33629512 Msa0544730:CDS
TCATGGAGCTTGTAGAAGTA+CGG 0.544317 4_1:+33629333 None:intergenic
TGCCCGTGATATTGAAGTCA+TGG 0.546113 4_1:-33626074 Msa0544730:CDS
GGCCAAGCAGTAGACGTTGT+TGG 0.547192 4_1:-33621262 Msa0544730:CDS
TTCGGGAGCCATCGGAGAAG+AGG 0.550433 4_1:+33629779 None:intergenic
AAGACACGGTCAGAATGATA+AGG 0.550929 4_1:+33621689 None:intergenic
CTATCAGTGCCTGTTCGGGT+TGG 0.551095 4_1:-33621283 Msa0544730:CDS
GCTGGTGCATTACTGGGAGT+TGG 0.551767 4_1:-33623445 Msa0544730:CDS
TTCCAAGGACTGCAGGACCT+TGG 0.552548 4_1:+33622409 None:intergenic
GATGTTGTTGACTGTGGATG+AGG 0.554247 4_1:-33621317 Msa0544730:CDS
AGGTCTTGTACATTTGGGAA+AGG 0.555099 4_1:-33621729 Msa0544730:CDS
AACAATTCCAAGTTAAGTGA+AGG 0.556109 4_1:-33626109 Msa0544730:CDS
CCTTCAAGAATTGGTGATAG+GGG 0.557370 4_1:+33621053 None:intergenic
TACTGACCCCGGGTTGCAGA+AGG 0.557812 4_1:-33629501 Msa0544730:CDS
TTGTAGGCAATGGCACTCCT+TGG 0.558145 4_1:-33623306 Msa0544730:intron
ATTGAGGTTTCTTGTTGCAG+AGG 0.558950 4_1:+33629944 None:intergenic
TGCTGGTTCCCAGAATGAGC+AGG 0.560900 4_1:-33623217 Msa0544730:intron
CCAAGCCACTGAAGTTTCTA+CGG 0.562286 4_1:-33629301 Msa0544730:CDS
CGGTTAGGTTCGGGAGCCAT+CGG 0.562440 4_1:+33629771 None:intergenic
GTAGAAGATGTTCTAACGAT+CGG 0.567757 4_1:+33622340 None:intergenic
TCCACAGTCAACAACATCCT+CGG 0.571268 4_1:+33621322 None:intergenic
TCTTTCAAGCTATTACTACA+AGG 0.573652 4_1:-33621865 Msa0544730:CDS
ACTAGCATATCATCTGGTCC+AGG 0.575933 4_1:+33626739 None:intergenic
GGTCGTCCTAAGACAATCAC+CGG 0.576068 4_1:-33621232 Msa0544730:CDS
AGCTGGAGTTGTATGTTGAG+AGG 0.576584 4_1:-33629532 Msa0544730:CDS
GCTGGAGTTGTATGTTGAGA+GGG 0.577745 4_1:-33629531 Msa0544730:CDS
ACATACACAAAATAGAAGGC+TGG 0.579470 4_1:+33621839 None:intergenic
TGGAATTGCTATGGTAGCAA+TGG 0.582283 4_1:-33622391 Msa0544730:CDS
GGCCCTTACAATGTCTGCTG+AGG 0.582711 4_1:-33629101 Msa0544730:CDS
GTAGACGTTGTTGGACAGGC+AGG 0.584047 4_1:-33621253 Msa0544730:CDS
GCTCCATGACTTCAATATCA+CGG 0.591509 4_1:+33626071 None:intergenic
TGATATGAAAGCTATTGTGT+TGG 0.593763 4_1:-33621469 Msa0544730:CDS
GCATTGGGCTTGATTTACGT+GGG 0.594648 4_1:-33623032 Msa0544730:CDS
TGTATCTGACAAGTTCAGCT+AGG 0.595489 4_1:-33628159 Msa0544730:intron
GCCCTTACAATGTCTGCTGA+GGG 0.595569 4_1:-33629100 Msa0544730:CDS
CTACAGGTGCGGATTGCCCA+AGG 0.595817 4_1:-33621749 Msa0544730:intron
TACTGATTCAGAAGTTGCAA+TGG 0.600180 4_1:-33622041 Msa0544730:intron
TCAAGAATATGCAAAACGAC+AGG 0.600683 4_1:-33628683 Msa0544730:intron
AACATTCCCAGTTCCAGCAT+AGG 0.601552 4_1:+33622585 None:intergenic
GAGGGAGATATTGGTTCATG+GGG 0.601739 4_1:-33628916 Msa0544730:CDS
ATACCGATTACTAGGTTCAG+AGG 0.603273 4_1:-33628935 Msa0544730:CDS
TCCAGCGCCTATTAGACCCA+AGG 0.605628 4_1:+33621923 None:intergenic
GTCCCCTGAAGATATATACA+AGG 0.607347 4_1:-33626044 Msa0544730:intron
TACCGATTACTAGGTTCAGA+GGG 0.611712 4_1:-33628934 Msa0544730:CDS
ATAGCAATTCCAAGGACTGC+AGG 0.612981 4_1:+33622402 None:intergenic
TGGAACTGGGAATGTTCTCA+AGG 0.617089 4_1:-33622578 Msa0544730:intron
TTGCTACCATAGCAATTCCA+AGG 0.618346 4_1:+33622394 None:intergenic
TAAAGAAGACCAAGGCCAAG+AGG 0.621416 4_1:+33622918 None:intergenic
CACAGCAGACCAAGTGCCAG+AGG 0.629366 4_1:+33622285 None:intergenic
GCCTTAAGAGTACCGTAATG+TGG 0.634211 4_1:+33629278 None:intergenic
CATGTGCCTATGCTGGAACT+GGG 0.635630 4_1:-33622591 Msa0544730:CDS
GTAATGCACCAGCAATGACA+TGG 0.635873 4_1:+33623455 None:intergenic
TGTTCACAACATCTTGACAA+AGG 0.637361 4_1:-33622441 Msa0544730:CDS
GGGTTCAGGATACTGACCCC+GGG 0.638406 4_1:-33629511 Msa0544730:CDS
CCCAGCAGCCAGGAGAACAG+GGG 0.638606 4_1:+33621192 None:intergenic
GCAGCATAATGCTGAACCAG+AGG 0.639545 4_1:-33628352 Msa0544730:intron
TATTTGATGATGTATTATTG+CGG 0.640289 4_1:-33620832 Msa0544730:three_prime_UTR
GGTAGAATGAGTCTGAAAGC+CGG 0.642327 4_1:+33621213 None:intergenic
GCTGTGTATATCAAACCCAA+AGG 0.645766 4_1:-33622268 Msa0544730:intron
CATTAACAAAAGTAGCAGCA+AGG 0.648095 4_1:+33623870 None:intergenic
TGAAGAATTAGGTGTTGAGA+TGG 0.648729 4_1:-33622367 Msa0544730:CDS
GCTCCCGAACCTAACCGCGC+CGG 0.652018 4_1:-33629765 Msa0544730:CDS
AGGTTGCTCTTGAAAGCATG+AGG 0.652603 4_1:-33629481 Msa0544730:intron
GTAACAACAGGAAAGTGTTG+AGG 0.652898 4_1:-33622680 Msa0544730:intron
AACTAAATACTGTTCAGACA+CGG 0.656708 4_1:+33620957 None:intergenic
TTACGTGGGTTCTTGCAATG+AGG 0.658349 4_1:-33623018 Msa0544730:CDS
CACCTTGTATATATCTTCAG+GGG 0.666070 4_1:+33626042 None:intergenic
TCCCTCAGCAGACATTGTAA+GGG 0.666227 4_1:+33629099 None:intergenic
GAGACTCAAACAAACCTGCA+TGG 0.668674 4_1:+33621410 None:intergenic
GCCGAGGATGTTGTTGACTG+TGG 0.669421 4_1:-33621323 Msa0544730:CDS
GGCATATTATGAAACTATGG+CGG 0.673217 4_1:-33629258 Msa0544730:CDS
GACAAAGGTGAGATGCACCA+AGG 0.682675 4_1:-33622426 Msa0544730:CDS
AAACCTGCATGGCCAAAACG+AGG 0.682882 4_1:+33621421 None:intergenic
GGTCTTGCTGACAGCATGTG+AGG 0.684340 4_1:-33626503 Msa0544730:intron
GAGCAACCTTCTGCAACCCG+GGG 0.688966 4_1:+33629495 None:intergenic
CAAGTGCCAGAGGAACTGCT+CGG 0.690748 4_1:+33622295 None:intergenic
TCCCAAGATAAAGAAGACCA+AGG 0.693423 4_1:+33622910 None:intergenic
TGTGGCCGTAGAAACTTCAG+TGG 0.696714 4_1:+33629296 None:intergenic
CTTACGGTGATAGTAAGACA+CGG 0.711897 4_1:+33621675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATTTAATATTTTTGTA+AGG - chr4_1:33621958-33621977 Msa0544730:intron 10.0%
!! ATAATTAAATTATGAGAATT+CGG + chr4_1:33623300-33623319 None:intergenic 10.0%
!! CATAATTTAATTATTAAGTA+AGG - chr4_1:33623306-33623325 Msa0544730:intron 10.0%
!!! AACAATTATTAAAATTTTAC+AGG - chr4_1:33623985-33624004 Msa0544730:intron 10.0%
!!! TTTTCTTTATATATCATAAA+TGG - chr4_1:33625426-33625445 Msa0544730:intron 10.0%
!!! TTTTTTTTTGTTTTTTTTTG+GGG - chr4_1:33625460-33625479 Msa0544730:intron 10.0%
!! GTAAAAAAATTATAAAAAGT+AGG - chr4_1:33625691-33625710 Msa0544730:intron 10.0%
!!! TATTTTAGTTAACAATTAAT+TGG - chr4_1:33626465-33626484 Msa0544730:CDS 10.0%
!!! ATTTTAGTTAACAATTAATT+GGG - chr4_1:33626466-33626485 Msa0544730:CDS 10.0%
!! TAAATTAAAAGGAAAAAAGT+GGG + chr4_1:33620854-33620873 None:intergenic 15.0%
!! TTAAATTAAAAGGAAAAAAG+TGG + chr4_1:33620855-33620874 None:intergenic 15.0%
!!! TATTGTATTTGTGTTTTATA+TGG - chr4_1:33621896-33621915 Msa0544730:CDS 15.0%
!!! ATTTAATATTTTTGTAAGGA+AGG - chr4_1:33621962-33621981 Msa0544730:intron 15.0%
!!! TTTAATATTTTTGTAAGGAA+GGG - chr4_1:33621963-33621982 Msa0544730:intron 15.0%
!!! AATCTTATGTTTTTTACTTA+TGG - chr4_1:33622020-33622039 Msa0544730:intron 15.0%
!! TAAAGAATGATTTATCATTA+TGG - chr4_1:33622679-33622698 Msa0544730:intron 15.0%
!! AAAAAACTTCAATAATAGAT+AGG - chr4_1:33623055-33623074 Msa0544730:CDS 15.0%
!!! TGATTTTTAATACATAATGA+AGG - chr4_1:33623794-33623813 Msa0544730:intron 15.0%
!!! TTCTATTTTTTTGTTTTGTT+TGG - chr4_1:33623936-33623955 Msa0544730:intron 15.0%
!!! TCTATTTTTTTGTTTTGTTT+GGG - chr4_1:33623937-33623956 Msa0544730:intron 15.0%
!!! AGTTGTTTAATTTTTGAAAA+CGG - chr4_1:33627980-33627999 Msa0544730:intron 15.0%
!! AAATACTATCAAAATGTAAA+AGG - chr4_1:33629834-33629853 Msa0544730:five_prime_UTR 15.0%
!! AATCCTCAACTATAAAATTA+GGG + chr4_1:33621302-33621321 None:intergenic 20.0%
!!! TTGTTTTTGTGTATTGAAAT+TGG - chr4_1:33621368-33621387 Msa0544730:intron 20.0%
!! TTCTATATTTAGAAATTGAG+TGG - chr4_1:33621690-33621709 Msa0544730:CDS 20.0%
!! TTGACAAAACAAACTTTAAA+AGG - chr4_1:33622564-33622583 Msa0544730:intron 20.0%
!! TAAATAACCAAATATTACGA+AGG - chr4_1:33622971-33622990 Msa0544730:CDS 20.0%
!!! TGGATTTTTTTAGTTATAAG+TGG - chr4_1:33623893-33623912 Msa0544730:CDS 20.0%
!! TTATGATTCAAATTGATGAA+AGG - chr4_1:33624834-33624853 Msa0544730:intron 20.0%
!!! GTGAATCATGTTTTATTATT+TGG - chr4_1:33625036-33625055 Msa0544730:intron 20.0%
!!! TCATGTTTTATTATTTGGTA+TGG - chr4_1:33625041-33625060 Msa0544730:intron 20.0%
!! ATGTGAAAAATTATAAGTGA+TGG + chr4_1:33625400-33625419 None:intergenic 20.0%
!!! AGAGAATTTTACATCAATTA+TGG + chr4_1:33625785-33625804 None:intergenic 20.0%
!! ATCATCATTGATCTAATTTA+TGG - chr4_1:33627153-33627172 Msa0544730:intron 20.0%
!! ACAGAAAAGGAAAAAATAAA+AGG + chr4_1:33627378-33627397 None:intergenic 20.0%
!!! TTTAATTTTTGAAAACGGTT+AGG - chr4_1:33627985-33628004 Msa0544730:intron 20.0%
!!! ATTAAAAGTCTTTGAAACTT+CGG + chr4_1:33628105-33628124 None:intergenic 20.0%
!! TACAAAAATGATAAAATGCA+GGG + chr4_1:33628518-33628537 None:intergenic 20.0%
!! ATACAAAAATGATAAAATGC+AGG + chr4_1:33628519-33628538 None:intergenic 20.0%
!! TTGTTGTAATAATTTCCAAT+CGG - chr4_1:33629193-33629212 Msa0544730:intron 20.0%
!!! AATAGTATATTACTTTTCTG+TGG + chr4_1:33629603-33629622 None:intergenic 20.0%
!!! TGAAGGTTTTGTAATTTTAA+AGG - chr4_1:33629717-33629736 Msa0544730:CDS 20.0%
!! AAATGAGAAAAACATGATTA+AGG + chr4_1:33629772-33629791 None:intergenic 20.0%
!!! TATTTGATGATGTATTATTG+CGG - chr4_1:33629921-33629940 Msa0544730:five_prime_UTR 20.0%
! TGTGAGTGTGTTAAATTAAA+AGG + chr4_1:33620865-33620884 None:intergenic 25.0%
!! TTCGAATTTTCACTCAATTT+AGG - chr4_1:33621104-33621123 Msa0544730:intron 25.0%
!! TCGAATTTTCACTCAATTTA+GGG - chr4_1:33621105-33621124 Msa0544730:intron 25.0%
!! AAACCCTAATTTTATAGTTG+AGG - chr4_1:33621296-33621315 Msa0544730:CDS 25.0%
! GAATCCTCAACTATAAAATT+AGG + chr4_1:33621303-33621322 None:intergenic 25.0%
! TGTATTGAAATTGGAAAGTA+TGG - chr4_1:33621377-33621396 Msa0544730:intron 25.0%
! TAAGGCATATTATGAAACTA+TGG - chr4_1:33621492-33621511 Msa0544730:CDS 25.0%
! TAAGTAATAGCATGGTATTA+TGG - chr4_1:33621569-33621588 Msa0544730:intron 25.0%
!! TTGCTATTGCAAATTTAGTT+TGG - chr4_1:33622167-33622186 Msa0544730:intron 25.0%
!! AATATCTCATATCCTTCTTT+TGG - chr4_1:33622446-33622465 Msa0544730:CDS 25.0%
! TATTCAGAAAGTGAACTTAA+CGG - chr4_1:33622481-33622500 Msa0544730:intron 25.0%
!!! ATGCAATCTTTTTTGTTGTT+AGG - chr4_1:33622511-33622530 Msa0544730:intron 25.0%
! TGGCCTACTTAAAAAATTAT+AGG - chr4_1:33622776-33622795 Msa0544730:intron 25.0%
!!! AGGCCTATAATTTTTTAAGT+AGG + chr4_1:33622782-33622801 None:intergenic 25.0%
! CAATTTAGTAGTAAGCATAT+TGG + chr4_1:33622912-33622931 None:intergenic 25.0%
! CAATATGCTTACTACTAAAT+TGG - chr4_1:33622910-33622929 Msa0544730:CDS 25.0%
! TAAATTGGTCAAATCTTATG+AGG - chr4_1:33622925-33622944 Msa0544730:CDS 25.0%
! AAATTGGTCAAATCTTATGA+GGG - chr4_1:33622926-33622945 Msa0544730:CDS 25.0%
! TAAATAGCTAAATCATACGA+AGG - chr4_1:33623020-33623039 Msa0544730:CDS 25.0%
!! CATGGACTATTTAGTTAAAT+AGG - chr4_1:33623106-33623125 Msa0544730:CDS 25.0%
! TAAAGAGATGAAAGTAAGAA+TGG - chr4_1:33623481-33623500 Msa0544730:CDS 25.0%
! CAATATCTGAAAATATCCTT+AGG + chr4_1:33623654-33623673 None:intergenic 25.0%
! CATAATGAAGGTTTATTAGA+TGG - chr4_1:33623806-33623825 Msa0544730:intron 25.0%
! TGAATAGTTTAAAGGTTCAT+TGG - chr4_1:33623849-33623868 Msa0544730:CDS 25.0%
!!! TTTTAAGGAACACTTCTTTA+AGG + chr4_1:33624203-33624222 None:intergenic 25.0%
! CAAGTATAATTAACGAGTTT+CGG - chr4_1:33624875-33624894 Msa0544730:intron 25.0%
! AGGTCAATAAAAATTGAACT+CGG + chr4_1:33624926-33624945 None:intergenic 25.0%
!!! TATGGATGTATTAGTTTTGT+GGG - chr4_1:33625059-33625078 Msa0544730:intron 25.0%
! ATAACAAACATGAATCAACT+GGG + chr4_1:33625145-33625164 None:intergenic 25.0%
!!! GTTATGCATTTTTTGAATTC+AGG - chr4_1:33625160-33625179 Msa0544730:intron 25.0%
!!! ATTTTTTGAATTCAGGAATC+TGG - chr4_1:33625167-33625186 Msa0544730:intron 25.0%
! AATTCCATTTAGCAACAAAT+GGG + chr4_1:33625194-33625213 None:intergenic 25.0%
! AAATTCCATTTAGCAACAAA+TGG + chr4_1:33625195-33625214 None:intergenic 25.0%
!!! TCTGTTTCTGCTTATTTTAA+AGG + chr4_1:33625288-33625307 None:intergenic 25.0%
!! ATTTTTCCACTAATTGATCT+AGG + chr4_1:33625559-33625578 None:intergenic 25.0%
! CAAAACATTAAATCCAATCA+AGG + chr4_1:33625870-33625889 None:intergenic 25.0%
!!! TGTTTTGTTATTAAGTTTCC+AGG - chr4_1:33625883-33625902 Msa0544730:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG - chr4_1:33626160-33626179 Msa0544730:CDS 25.0%
! AAAAAAAATAAACCAGTCCT+AGG - chr4_1:33626264-33626283 Msa0544730:intron 25.0%
!!! AAACTGGCTTTTTAAAAACA+AGG - chr4_1:33627080-33627099 Msa0544730:intron 25.0%
! TTATCCCTTGTATTATAACA+GGG - chr4_1:33627206-33627225 Msa0544730:intron 25.0%
! AAAAAATAAAAGGAACTCAC+AGG + chr4_1:33627368-33627387 None:intergenic 25.0%
!! ATCTTATTTGATTCCATTGT+AGG - chr4_1:33627431-33627450 Msa0544730:intron 25.0%
!!! CTTTTTCAATAAAATCACCA+AGG + chr4_1:33627467-33627486 None:intergenic 25.0%
! AGCAATCATATTTACATTGA+TGG - chr4_1:33627768-33627787 Msa0544730:intron 25.0%
!! TCATATTTACATTGATGGAT+CGG - chr4_1:33627773-33627792 Msa0544730:intron 25.0%
! ATACTTTGCAAACGTAAATA+AGG + chr4_1:33627950-33627969 None:intergenic 25.0%
!! ATTTTAAACATAAAAGGCTG+CGG + chr4_1:33628249-33628268 None:intergenic 25.0%
!! CCAGCAATTTTAAACATAAA+AGG + chr4_1:33628255-33628274 None:intergenic 25.0%
!!! CCTTTTATGTTTAAAATTGC+TGG - chr4_1:33628252-33628271 Msa0544730:intron 25.0%
! ATAGACAACAATGATTTAAG+AGG + chr4_1:33628751-33628770 None:intergenic 25.0%
! TCTTAAATCATTGTTGTCTA+TGG - chr4_1:33628750-33628769 Msa0544730:intron 25.0%
! TGAAACATACACAAAATAGA+AGG + chr4_1:33628921-33628940 None:intergenic 25.0%
!! GCAAAATAAGGTTTAACTTA+CGG + chr4_1:33629097-33629116 None:intergenic 25.0%
!!! ATTAAGACTAGCTTCAAATA+GGG + chr4_1:33629393-33629412 None:intergenic 25.0%
!!! AATTAAGACTAGCTTCAAAT+AGG + chr4_1:33629394-33629413 None:intergenic 25.0%
! ATTACAAAACCTTCAAGAAT+TGG + chr4_1:33629712-33629731 None:intergenic 25.0%
! GAAAGATGGTTTATTAATTG+TGG - chr4_1:33629957-33629976 Msa0544730:five_prime_UTR 25.0%
TTGGAGAATTTAACAGATTG+AGG + chr4_1:33620828-33620847 None:intergenic 30.0%
! AAAGGAAAAAAGTGGGATTT+TGG + chr4_1:33620847-33620866 None:intergenic 30.0%
CTTTGTGTTAAGTAATAGCA+TGG - chr4_1:33621561-33621580 Msa0544730:intron 30.0%
TCGATTGTGTTATAGTTTGA+TGG - chr4_1:33621737-33621756 Msa0544730:CDS 30.0%
TTGTAAACAATCGAATCACT+AGG - chr4_1:33621936-33621955 Msa0544730:CDS 30.0%
! TACTTATGGTGTCAGAAATT+TGG - chr4_1:33622034-33622053 Msa0544730:intron 30.0%
AGATAATACCTTCATGTGAA+AGG + chr4_1:33622281-33622300 None:intergenic 30.0%
AGTTCACTTTCTGAATAGTT+CGG + chr4_1:33622478-33622497 None:intergenic 30.0%
!!! TCTTTTTTGTTGTTAGGTTG+AGG - chr4_1:33622517-33622536 Msa0544730:intron 30.0%
ATATTCTCTTAAAACTCCAG+AGG + chr4_1:33622629-33622648 None:intergenic 30.0%
! GACCTATTTCTTGAATTTCT+TGG - chr4_1:33622756-33622775 Msa0544730:intron 30.0%
TTGGTTATTTAGTAGCATGT+TGG + chr4_1:33622962-33622981 None:intergenic 30.0%
GATTAAGCCTTCGTAATATT+TGG + chr4_1:33622981-33623000 None:intergenic 30.0%
TGATTTAGCTATTTAGTAGC+AGG + chr4_1:33623015-33623034 None:intergenic 30.0%
AACTTCAATAATAGATAGGC+CGG - chr4_1:33623059-33623078 Msa0544730:CDS 30.0%
TAACTAAATAGTCCATGCTA+AGG + chr4_1:33623103-33623122 None:intergenic 30.0%
! AGCCTAGCCTTTATATTAAA+CGG - chr4_1:33623145-33623164 Msa0544730:intron 30.0%
!!! TAAGGCTTTTTTAAAGCCTA+TGG + chr4_1:33623203-33623222 None:intergenic 30.0%
TAAAAAGAGATGCAGTGATT+CGG - chr4_1:33623352-33623371 Msa0544730:intron 30.0%
GGAGACTTCAAATATGATTA+AGG - chr4_1:33623502-33623521 Msa0544730:CDS 30.0%
! AGTCTTGTATCTCAACAATA+GGG + chr4_1:33623578-33623597 None:intergenic 30.0%
GATATTGTAACACTAACAAC+TGG - chr4_1:33623667-33623686 Msa0544730:CDS 30.0%
CAATATGTTTCTTTAGTTGC+TGG - chr4_1:33623724-33623743 Msa0544730:CDS 30.0%
AATTGGGGTGAATAGTTTAA+AGG - chr4_1:33623841-33623860 Msa0544730:intron 30.0%
! AAATTTTACAGGTATCTTCC+TGG - chr4_1:33623996-33624015 Msa0544730:intron 30.0%
!! TGTGATTGATTTTCTCTCTA+TGG - chr4_1:33624165-33624184 Msa0544730:intron 30.0%
!! GAACACTTCTTTAAGGTATA+TGG + chr4_1:33624196-33624215 None:intergenic 30.0%
! TTTCAAACCACAAGCTTTTA+AGG + chr4_1:33624218-33624237 None:intergenic 30.0%
! TTGACAATTGATAACACTAG+AGG - chr4_1:33624474-33624493 Msa0544730:intron 30.0%
! TGACAATTGATAACACTAGA+GGG - chr4_1:33624475-33624494 Msa0544730:intron 30.0%
GACTTAAAATTTCACTCAGA+TGG - chr4_1:33624507-33624526 Msa0544730:intron 30.0%
! ATTTCACTCAGATGGTATTT+TGG - chr4_1:33624515-33624534 Msa0544730:intron 30.0%
! TTTCACTCAGATGGTATTTT+GGG - chr4_1:33624516-33624535 Msa0544730:intron 30.0%
! ATGGTTTTTGTGATGTATTC+AGG - chr4_1:33624550-33624569 Msa0544730:intron 30.0%
! TGGTTTTTGTGATGTATTCA+GGG - chr4_1:33624551-33624570 Msa0544730:intron 30.0%
AACAATTCCAAGTTAAGTGA+AGG - chr4_1:33624644-33624663 Msa0544730:intron 30.0%
CAAATATCCTTCACTTAACT+TGG + chr4_1:33624654-33624673 None:intergenic 30.0%
! TTATATTTCAGAGCATTAGC+TGG + chr4_1:33624799-33624818 None:intergenic 30.0%
CGAAACTCGTTAATTATACT+TGG + chr4_1:33624877-33624896 None:intergenic 30.0%
TAATTAACGAGTTTCGGTTT+AGG - chr4_1:33624881-33624900 Msa0544730:intron 30.0%
GGTCAATAAAAATTGAACTC+GGG + chr4_1:33624925-33624944 None:intergenic 30.0%
! TCTGGTAATCTAAAGTTCAT+CGG + chr4_1:33624965-33624984 None:intergenic 30.0%
AAGACCAAAAAAGGATAGAT+AGG - chr4_1:33625014-33625033 Msa0544730:intron 30.0%
!!! TTCACCTATCTATCCTTTTT+TGG + chr4_1:33625021-33625040 None:intergenic 30.0%
!!! GTATGGATGTATTAGTTTTG+TGG - chr4_1:33625058-33625077 Msa0544730:intron 30.0%
CATAACAAACATGAATCAAC+TGG + chr4_1:33625146-33625165 None:intergenic 30.0%
TAAAATAAGCAGAAACAGAC+AGG - chr4_1:33625289-33625308 Msa0544730:intron 30.0%
AAAATAAGCAGAAACAGACA+GGG - chr4_1:33625290-33625309 Msa0544730:intron 30.0%
TAACGATCAAATGTGTGAAA+TGG + chr4_1:33625652-33625671 None:intergenic 30.0%
!!! TGTTGTTTTCTTTCCTTGAT+TGG - chr4_1:33625854-33625873 Msa0544730:intron 30.0%
GAGTCTGCAAATTTAATCTA+TGG - chr4_1:33626062-33626081 Msa0544730:CDS 30.0%
ATATAGTATAGCACTTATGG+TGG + chr4_1:33626385-33626404 None:intergenic 30.0%
TGGATATAGTATAGCACTTA+TGG + chr4_1:33626388-33626407 None:intergenic 30.0%
AGTGCTATACTATATCCAAA+AGG - chr4_1:33626390-33626409 Msa0544730:intron 30.0%
!!! CTAAACTCTTGCTTCTTTTT+TGG + chr4_1:33626444-33626463 None:intergenic 30.0%
CAATTAATTGGGATGTATTG+AGG - chr4_1:33626477-33626496 Msa0544730:CDS 30.0%
CAATTCAGAGCAAAATATGA+GGG + chr4_1:33626793-33626812 None:intergenic 30.0%
ACAATTCAGAGCAAAATATG+AGG + chr4_1:33626794-33626813 None:intergenic 30.0%
!!! GCTCTGAATTGTTTTTTCTT+AGG - chr4_1:33626802-33626821 Msa0544730:intron 30.0%
! GTTAATGCATTTGTTAATGC+CGG - chr4_1:33626899-33626918 Msa0544730:intron 30.0%
!! CTTTTTAAAAACAAGGAGCA+TGG - chr4_1:33627087-33627106 Msa0544730:intron 30.0%
GTTATCCCTTGTATTATAAC+AGG - chr4_1:33627205-33627224 Msa0544730:intron 30.0%
CATACCCTGTTATAATACAA+GGG + chr4_1:33627213-33627232 None:intergenic 30.0%
TCATACCCTGTTATAATACA+AGG + chr4_1:33627214-33627233 None:intergenic 30.0%
! AACAGGGTATGATTTTACTA+TGG - chr4_1:33627222-33627241 Msa0544730:intron 30.0%
! ACAGGGTATGATTTTACTAT+GGG - chr4_1:33627223-33627242 Msa0544730:intron 30.0%
TGACATGGTTATCATTACTA+TGG + chr4_1:33627286-33627305 None:intergenic 30.0%
GTACATGTCATATACAGAAA+AGG + chr4_1:33627391-33627410 None:intergenic 30.0%
ACTAGAATTGGTGCAATTAT+GGG - chr4_1:33627498-33627517 Msa0544730:intron 30.0%
!! AATTTTTGAAAACGGTTAGG+AGG - chr4_1:33627988-33628007 Msa0544730:intron 30.0%
!! ATTTTTGAAAACGGTTAGGA+GGG - chr4_1:33627989-33628008 Msa0544730:intron 30.0%
ATAGTACTAACTCCATATTG+TGG - chr4_1:33628047-33628066 Msa0544730:intron 30.0%
TGTTGTTACATACCACAATA+TGG + chr4_1:33628062-33628081 None:intergenic 30.0%
ATATTGTGGTATGTAACAAC+AGG - chr4_1:33628061-33628080 Msa0544730:intron 30.0%
TTAGAACATCTTCTACAGTA+TGG - chr4_1:33628420-33628439 Msa0544730:intron 30.0%
! TCTGTCATATTTTCAGAACA+AGG + chr4_1:33628575-33628594 None:intergenic 30.0%
!! TGTTCTGAAAATATGACAGA+TGG - chr4_1:33628575-33628594 Msa0544730:intron 30.0%
! TGTTAACCCTTTATTTGATC+AGG - chr4_1:33628652-33628671 Msa0544730:intron 30.0%
CATTGACCTGATCAAATAAA+GGG + chr4_1:33628661-33628680 None:intergenic 30.0%
ACATTGACCTGATCAAATAA+AGG + chr4_1:33628662-33628681 None:intergenic 30.0%
ATTTGATCAGGTCAATGTTA+TGG - chr4_1:33628664-33628683 Msa0544730:intron 30.0%
AATCATTGTTGTCTATGGTT+TGG - chr4_1:33628755-33628774 Msa0544730:intron 30.0%
! AAACACATTTTGTATGCTAC+AGG - chr4_1:33628795-33628814 Msa0544730:intron 30.0%
TCTTTCAAGCTATTACTACA+AGG - chr4_1:33628888-33628907 Msa0544730:intron 30.0%
TAACTAAGACAAAAGCAGAT+GGG + chr4_1:33629119-33629138 None:intergenic 30.0%
TTAACTAAGACAAAAGCAGA+TGG + chr4_1:33629120-33629139 None:intergenic 30.0%
! ACGTTCCTTTCAATTTTTAC+AGG - chr4_1:33629220-33629239 Msa0544730:intron 30.0%
ACACAATAGCTTTCATATCA+AGG + chr4_1:33629284-33629303 None:intergenic 30.0%
TGATATGAAAGCTATTGTGT+TGG - chr4_1:33629284-33629303 Msa0544730:CDS 30.0%
GATATGAAAGCTATTGTGTT+GGG - chr4_1:33629285-33629304 Msa0544730:CDS 30.0%
!! TTAAGACTAGCTTCAAATAG+GGG + chr4_1:33629392-33629411 None:intergenic 30.0%
!!! GCTTGTTTTAAAGTATCACA+AGG + chr4_1:33629627-33629646 None:intergenic 30.0%
TAAAGGACAATCCAGATTAT+AGG - chr4_1:33629734-33629753 Msa0544730:CDS 30.0%
AAAGGACAATCCAGATTATA+GGG - chr4_1:33629735-33629754 Msa0544730:CDS 30.0%
AACTAAATACTGTTCAGACA+CGG + chr4_1:33629799-33629818 None:intergenic 30.0%
!! GTGTCGATTAATTTGAAAGA+TGG - chr4_1:33629943-33629962 Msa0544730:five_prime_UTR 30.0%
TTTCACGCTAAATCGAACTT+AGG - chr4_1:33620940-33620959 Msa0544730:three_prime_UTR 35.0%
TTCACGCTAAATCGAACTTA+GGG - chr4_1:33620941-33620960 Msa0544730:three_prime_UTR 35.0%
TGAGTGAAAATTCGAATCGA+GGG + chr4_1:33621100-33621119 None:intergenic 35.0%
TTGAGTGAAAATTCGAATCG+AGG + chr4_1:33621101-33621120 None:intergenic 35.0%
GGCATATTATGAAACTATGG+CGG - chr4_1:33621495-33621514 Msa0544730:CDS 35.0%
!! TTCGTCATTGCAGAAGTATT+TGG - chr4_1:33621610-33621629 Msa0544730:intron 35.0%
GGCTGACATATTATCAGTAT+TGG - chr4_1:33621631-33621650 Msa0544730:intron 35.0%
! AGTCTCAAATACCGATTACT+AGG - chr4_1:33621810-33621829 Msa0544730:intron 35.0%
GTGATTCGATTGTTTACAAC+AGG + chr4_1:33621935-33621954 None:intergenic 35.0%
! AAGGAAGGGTTGATTGAAAA+AGG - chr4_1:33621977-33621996 Msa0544730:intron 35.0%
TCAAGAATATGCAAAACGAC+AGG - chr4_1:33622070-33622089 Msa0544730:CDS 35.0%
AATATGCAAAACGACAGGTT+AGG - chr4_1:33622075-33622094 Msa0544730:CDS 35.0%
TACAGAAAATGCTGTAGTGA+GGG + chr4_1:33622120-33622139 None:intergenic 35.0%
ATACAGAAAATGCTGTAGTG+AGG + chr4_1:33622121-33622140 None:intergenic 35.0%
AGTTCCATGAGATCATCAAT+TGG + chr4_1:33622241-33622260 None:intergenic 35.0%
AATAGTTGCCTTTCACATGA+AGG - chr4_1:33622270-33622289 Msa0544730:CDS 35.0%
GTTCACTTTCTGAATAGTTC+GGG + chr4_1:33622477-33622496 None:intergenic 35.0%
! TTGAACTTTTGCATCTTGTG+TGG - chr4_1:33622702-33622721 Msa0544730:intron 35.0%
GGCCAAGAAATTCAAGAAAT+AGG + chr4_1:33622761-33622780 None:intergenic 35.0%
TTAATATAAAGGCTAGGCTC+AGG + chr4_1:33623144-33623163 None:intergenic 35.0%
! GCCTAGCCTTTATATTAAAC+GGG - chr4_1:33623146-33623165 Msa0544730:intron 35.0%
!! AAGGTCATTTGTTATCATCC+TGG - chr4_1:33623325-33623344 Msa0544730:intron 35.0%
! TTGTTAGCTTAGCTGATACT+TGG - chr4_1:33623395-33623414 Msa0544730:intron 35.0%
!! TATACAAGTGTCGAAGTCAT+TGG - chr4_1:33623451-33623470 Msa0544730:CDS 35.0%
!! ATACAAGTGTCGAAGTCATT+GGG - chr4_1:33623452-33623471 Msa0544730:CDS 35.0%
! GAGTCTTGTATCTCAACAAT+AGG + chr4_1:33623579-33623598 None:intergenic 35.0%
! GATTAGTTCCCTACTCAATT+AGG + chr4_1:33623607-33623626 None:intergenic 35.0%
!! ATGGAGTTTGACTTGCAATT+GGG - chr4_1:33623825-33623844 Msa0544730:intron 35.0%
GGTTCATTGGATATAGTCAT+TGG - chr4_1:33623862-33623881 Msa0544730:CDS 35.0%
AACTAAAAAAATCCAGAGCC+AGG + chr4_1:33623888-33623907 None:intergenic 35.0%
ACCAGATGATATGCTAGTAT+TGG - chr4_1:33624019-33624038 Msa0544730:intron 35.0%
TCCAATACTAGCATATCATC+TGG + chr4_1:33624023-33624042 None:intergenic 35.0%
AATGCAATTTGCAGTGCATT+TGG + chr4_1:33624083-33624102 None:intergenic 35.0%
ACTGCAAATTGCATTGTTCA+TGG - chr4_1:33624088-33624107 Msa0544730:intron 35.0%
AAGTGTTCCTTAAAAGCTTG+TGG - chr4_1:33624208-33624227 Msa0544730:intron 35.0%
! GGTTTGAAACTAACTAGTTG+CGG - chr4_1:33624229-33624248 Msa0544730:intron 35.0%
ATTCTGTGTTAGTACTTGTG+TGG - chr4_1:33624350-33624369 Msa0544730:intron 35.0%
ACAGTTACATCCATTATCAC+AGG + chr4_1:33624404-33624423 None:intergenic 35.0%
TATATATCTTCAGGGGACTT+AGG + chr4_1:33624707-33624726 None:intergenic 35.0%
CACCTTGTATATATCTTCAG+GGG + chr4_1:33624714-33624733 None:intergenic 35.0%
GCACCTTGTATATATCTTCA+GGG + chr4_1:33624715-33624734 None:intergenic 35.0%
TGCACCTTGTATATATCTTC+AGG + chr4_1:33624716-33624735 None:intergenic 35.0%
ATTGATGAAAGGAAACCAAG+TGG - chr4_1:33624845-33624864 Msa0544730:intron 35.0%
! TAATCTAAAGTTCATCGGGT+AGG + chr4_1:33624960-33624979 None:intergenic 35.0%
! CTGGTAATCTAAAGTTCATC+GGG + chr4_1:33624964-33624983 None:intergenic 35.0%
! TTGATGATTGCATGTGATTG+AGG - chr4_1:33625118-33625137 Msa0544730:intron 35.0%
AACTAAAGTTTCTACTGTGC+TGG - chr4_1:33625495-33625514 Msa0544730:intron 35.0%
AGATAGCCTAGATCAATTAG+TGG - chr4_1:33625550-33625569 Msa0544730:intron 35.0%
!!! GACATGTATTTTGAAACGGA+AGG + chr4_1:33625621-33625640 None:intergenic 35.0%
!! CAGCGACATGTATTTTGAAA+CGG + chr4_1:33625625-33625644 None:intergenic 35.0%
!! ATGCGACATGCATTTTGAAA+CGG - chr4_1:33625751-33625770 Msa0544730:intron 35.0%
CTCTACAAATAATTAGAGCC+TGG + chr4_1:33625904-33625923 None:intergenic 35.0%
! CAGGCTCTAATTATTTGTAG+AGG - chr4_1:33625902-33625921 Msa0544730:intron 35.0%
!! AGTTGTTGCTTTAGCAATGA+GGG + chr4_1:33625930-33625949 None:intergenic 35.0%
CAAGAAACATCCTGTTTAAC+AGG + chr4_1:33625965-33625984 None:intergenic 35.0%
!! TGTAACACACTGGTTTACAT+TGG - chr4_1:33625983-33626002 Msa0544730:intron 35.0%
TAAATTTGCAGACTCTACAC+AGG + chr4_1:33626057-33626076 None:intergenic 35.0%
!! ATTTTCCCGTATCGACATAT+CGG + chr4_1:33626139-33626158 None:intergenic 35.0%
! AGCACTAACAATGTTCCTTT+TGG + chr4_1:33626408-33626427 None:intergenic 35.0%
TATCGGTGCAGGATAATTAT+CGG - chr4_1:33626504-33626523 Msa0544730:intron 35.0%
GATACTTTCCTGATACGTAT+CGG - chr4_1:33626526-33626545 Msa0544730:intron 35.0%
ATACTTTCCTGATACGTATC+GGG - chr4_1:33626527-33626546 Msa0544730:intron 35.0%
ATACTCTCCTGATACGTATT+GGG - chr4_1:33626596-33626615 Msa0544730:intron 35.0%
! TGATACGTATTGGGAAGTAT+CGG - chr4_1:33626605-33626624 Msa0544730:intron 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG - chr4_1:33626664-33626683 Msa0544730:CDS 35.0%
CATTAACAAAAGTAGCAGCA+AGG + chr4_1:33626886-33626905 None:intergenic 35.0%
CACAACAGTAATTGAATGGA+AGG + chr4_1:33627007-33627026 None:intergenic 35.0%
AATGATAACCATGTCATTGC+TGG - chr4_1:33627290-33627309 Msa0544730:intron 35.0%
TTTGATTCCATTGTAGGCAA+TGG - chr4_1:33627437-33627456 Msa0544730:intron 35.0%
GAAGATAGTTCGACTAGAAT+TGG - chr4_1:33627486-33627505 Msa0544730:intron 35.0%
GACTAGAATTGGTGCAATTA+TGG - chr4_1:33627497-33627516 Msa0544730:intron 35.0%
ATTGGTGCAATTATGGGATT+AGG - chr4_1:33627504-33627523 Msa0544730:intron 35.0%
! ATCTCAACAAGGTGTTACAA+GGG + chr4_1:33627575-33627594 None:intergenic 35.0%
CTTTCAGTTACGATACAAGT+TGG - chr4_1:33627642-33627661 Msa0544730:intron 35.0%
GAAGCAGGTATTTACTTGTT+TGG - chr4_1:33627864-33627883 Msa0544730:intron 35.0%
!! TTTTTGAAAACGGTTAGGAG+GGG - chr4_1:33627990-33628009 Msa0544730:intron 35.0%
ATATGGAGTTAGTACTATGC+TGG + chr4_1:33628045-33628064 None:intergenic 35.0%
! ATGCAGGTGCAAAATCTTTT+GGG - chr4_1:33628285-33628304 Msa0544730:intron 35.0%
TGTTCACAACATCTTGACAA+AGG - chr4_1:33628312-33628331 Msa0544730:intron 35.0%
!! TGAAGAATTAGGTGTTGAGA+TGG - chr4_1:33628386-33628405 Msa0544730:intron 35.0%
GTAGAAGATGTTCTAACGAT+CGG + chr4_1:33628416-33628435 None:intergenic 35.0%
CAACTTCTGAATCAGTATCA+TGG + chr4_1:33628709-33628728 None:intergenic 35.0%
!! TACTGATTCAGAAGTTGCAA+TGG - chr4_1:33628712-33628731 Msa0544730:intron 35.0%
ACATACACAAAATAGAAGGC+TGG + chr4_1:33628917-33628936 None:intergenic 35.0%
TCAGTGAACATTGTAACAAG+CGG + chr4_1:33628970-33628989 None:intergenic 35.0%
! GATTTTCTTTTCTACGCTAC+AGG - chr4_1:33628988-33629007 Msa0544730:intron 35.0%
AAAAGCAGATGGGCAAAATA+AGG + chr4_1:33629109-33629128 None:intergenic 35.0%
CAGATGCAAACTAATTGAGT+CGG - chr4_1:33629148-33629167 Msa0544730:intron 35.0%
GCTGTCCTGTAAAAATTGAA+AGG + chr4_1:33629228-33629247 None:intergenic 35.0%
! ACCTTCAAGAATTGGTGATA+GGG + chr4_1:33629704-33629723 None:intergenic 35.0%
! AACCTTCAAGAATTGGTGAT+AGG + chr4_1:33629705-33629724 None:intergenic 35.0%
ATTGAGGTTTCTTGTTGCAG+AGG + chr4_1:33620812-33620831 None:intergenic 40.0%
!!! GCTCTCGATCTTCTTTTTTG+CGG + chr4_1:33621055-33621074 None:intergenic 40.0%
GAGTGAAAATTCGAATCGAG+GGG + chr4_1:33621099-33621118 None:intergenic 40.0%
TCATGGAGCTTGTAGAAGTA+CGG + chr4_1:33621423-33621442 None:intergenic 40.0%
AAGTTTCTACGGCCACATTA+CGG - chr4_1:33621463-33621482 Msa0544730:CDS 40.0%
! TATGGCGGAATCAGAGTTAA+AGG - chr4_1:33621510-33621529 Msa0544730:CDS 40.0%
! ATCGGTATTTGAGACTTTCC+TGG + chr4_1:33621806-33621825 None:intergenic 40.0%
! ATACCGATTACTAGGTTCAG+AGG - chr4_1:33621818-33621837 Msa0544730:intron 40.0%
! TACCGATTACTAGGTTCAGA+GGG - chr4_1:33621819-33621838 Msa0544730:intron 40.0%
!! AGAGGGAGATATTGGTTCAT+GGG - chr4_1:33621836-33621855 Msa0544730:intron 40.0%
! TATGGTGTCAGAAATTTGGC+TGG - chr4_1:33622038-33622057 Msa0544730:intron 40.0%
! TGTGCATTGATAGAGTGAAG+AGG - chr4_1:33622213-33622232 Msa0544730:intron 40.0%
ATCAAAAGATCAACAGCCTC+TGG + chr4_1:33622420-33622439 None:intergenic 40.0%
! AGAGGCTGTTGATCTTTTGA+TGG - chr4_1:33622419-33622438 Msa0544730:CDS 40.0%
GTTCGGGAAAAACCAAAAGA+AGG + chr4_1:33622461-33622480 None:intergenic 40.0%
TGTATCTGACAAGTTCAGCT+AGG - chr4_1:33622594-33622613 Msa0544730:CDS 40.0%
!! GCCTAGTCTAGCCTTTTTAA+AGG - chr4_1:33622840-33622859 Msa0544730:intron 40.0%
! GCCTTTAAAAAGGCTAGACT+AGG + chr4_1:33622844-33622863 None:intergenic 40.0%
! GCTTCACTAGGCCTTTAAAA+AGG + chr4_1:33622854-33622873 None:intergenic 40.0%
!! GTAAGCATATTGGTGTTGCA+AGG + chr4_1:33622902-33622921 None:intergenic 40.0%
AGTAGCATGTTGGTGTACTT+GGG + chr4_1:33622952-33622971 None:intergenic 40.0%
TAGTAGCATGTTGGTGTACT+TGG + chr4_1:33622953-33622972 None:intergenic 40.0%
GAAGGCTTAATCACACCAAT+AGG - chr4_1:33622989-33623008 Msa0544730:CDS 40.0%
CTATTTAGTAGCAGGCCTAT+TGG + chr4_1:33623007-33623026 None:intergenic 40.0%
AGCTAAATCATACGAAGGCA+TGG - chr4_1:33623025-33623044 Msa0544730:CDS 40.0%
! GCTAAATCATACGAAGGCAT+GGG - chr4_1:33623026-33623045 Msa0544730:CDS 40.0%
AGTCCATGCTAAGGCTTATA+AGG + chr4_1:33623094-33623113 None:intergenic 40.0%
GCCCGTTTAATATAAAGGCT+AGG + chr4_1:33623150-33623169 None:intergenic 40.0%
AGCCTTTATATTAAACGGGC+CGG - chr4_1:33623150-33623169 Msa0544730:intron 40.0%
! TTTTAAATAGGCCAGGCCAT+AGG - chr4_1:33623184-33623203 Msa0544730:intron 40.0%
!!! CTTTTTTAAAGCCTATGGCC+TGG + chr4_1:33623198-33623217 None:intergenic 40.0%
!! GCTTTAAAAAAGCCTTAGCC+TGG - chr4_1:33623206-33623225 Msa0544730:intron 40.0%
!! TGCATCTCTTTTTAGTCTCC+AGG + chr4_1:33623346-33623365 None:intergenic 40.0%
GCAGCAAGAACAGTGTTAAT+AGG + chr4_1:33623422-33623441 None:intergenic 40.0%
ACTCCTAGTCCTAATTGAGT+AGG - chr4_1:33623595-33623614 Msa0544730:intron 40.0%
CTCCTAGTCCTAATTGAGTA+GGG - chr4_1:33623596-33623615 Msa0544730:intron 40.0%
TTCCCTACTCAATTAGGACT+AGG + chr4_1:33623601-33623620 None:intergenic 40.0%
AACCAAGTGACAAGAACCTA+AGG - chr4_1:33623635-33623654 Msa0544730:intron 40.0%
ATCCTTAGGTTCTTGTCACT+TGG + chr4_1:33623640-33623659 None:intergenic 40.0%
TATTTGTGCCTGTGACAGAA+TGG - chr4_1:33623694-33623713 Msa0544730:CDS 40.0%
! TGTTTCTTTAGTTGCTGGCT+TGG - chr4_1:33623729-33623748 Msa0544730:intron 40.0%
!! GATGGAGTTTGACTTGCAAT+TGG - chr4_1:33623824-33623843 Msa0544730:intron 40.0%
!! TGGAGTTTGACTTGCAATTG+GGG - chr4_1:33623826-33623845 Msa0544730:intron 40.0%
ATTGGATATAGTCATTGGCC+TGG - chr4_1:33623867-33623886 Msa0544730:CDS 40.0%
ATTGTTCATGGATAACCTGC+TGG - chr4_1:33624100-33624119 Msa0544730:intron 40.0%
CAAGTACTAACACAGAATCC+AGG + chr4_1:33624348-33624367 None:intergenic 40.0%
! CTTGTGTGGCGAATAGTTTT+TGG - chr4_1:33624364-33624383 Msa0544730:intron 40.0%
AGTTTCCTTGCCTGTGATAA+TGG - chr4_1:33624391-33624410 Msa0544730:intron 40.0%
TACATCCATTATCACAGGCA+AGG + chr4_1:33624399-33624418 None:intergenic 40.0%
!!! ATTTTGGGACTCTCTCTTGA+TGG - chr4_1:33624531-33624550 Msa0544730:intron 40.0%
!! AATCACTTTTGAGCTTGACG+AGG - chr4_1:33624574-33624593 Msa0544730:intron 40.0%
! TTTTGAGCTTGACGAGGAAA+TGG - chr4_1:33624580-33624599 Msa0544730:intron 40.0%
CTCCATGACTTCAATATCAC+GGG + chr4_1:33624684-33624703 None:intergenic 40.0%
GCTCCATGACTTCAATATCA+CGG + chr4_1:33624685-33624704 None:intergenic 40.0%
GTCCCCTGAAGATATATACA+AGG - chr4_1:33624709-33624728 Msa0544730:intron 40.0%
TATGGGAGTCATATGTAGTC+AGG + chr4_1:33624776-33624795 None:intergenic 40.0%
! TTCAGAGCATTAGCTGGTAT+GGG + chr4_1:33624793-33624812 None:intergenic 40.0%
! TTTCAGAGCATTAGCTGGTA+TGG + chr4_1:33624794-33624813 None:intergenic 40.0%
TATACTTGGACTCAACCACT+TGG + chr4_1:33624863-33624882 None:intergenic 40.0%
TCGGTTTAGGTCGAATTGAA+AGG - chr4_1:33624894-33624913 Msa0544730:intron 40.0%
CGGTTTAGGTCGAATTGAAA+GGG - chr4_1:33624895-33624914 Msa0544730:intron 40.0%
TCGGGTAGGTAATTAAAGTC+AGG + chr4_1:33624946-33624965 None:intergenic 40.0%
TGGAGGGTTAAGACCAAAAA+AGG - chr4_1:33625005-33625024 Msa0544730:intron 40.0%
! TGGACCCATTTGTTGCTAAA+TGG - chr4_1:33625187-33625206 Msa0544730:intron 40.0%
!! GTGATGGATGTCAATTTCAG+TGG + chr4_1:33625384-33625403 None:intergenic 40.0%
!!! GACATGCATTTTGAAACGGA+GGG - chr4_1:33625755-33625774 Msa0544730:intron 40.0%
!! CAGTTGTTGCTTTAGCAATG+AGG + chr4_1:33625931-33625950 None:intergenic 40.0%
GGATGTTTCTTGTAACACAC+TGG - chr4_1:33625973-33625992 Msa0544730:intron 40.0%
AAATCAAGATACGATACGGC+TGG - chr4_1:33626164-33626183 Msa0544730:CDS 40.0%
AATCAAGATACGATACGGCT+GGG - chr4_1:33626165-33626184 Msa0544730:CDS 40.0%
! GCACTTATGGTGGTCTTTTT+GGG + chr4_1:33626375-33626394 None:intergenic 40.0%
! AGCACTTATGGTGGTCTTTT+TGG + chr4_1:33626376-33626395 None:intergenic 40.0%
TAATTGGGATGTATTGAGGC+AGG - chr4_1:33626481-33626500 Msa0544730:CDS 40.0%
! TGATACGTATCGGGAAGTAT+CGG - chr4_1:33626536-33626555 Msa0544730:intron 40.0%
GATACTCTCCTGATACGTAT+TGG - chr4_1:33626595-33626614 Msa0544730:intron 40.0%
GATACTTCCCAATACGTATC+AGG + chr4_1:33626606-33626625 None:intergenic 40.0%
!! GATACGTATTGGGAAGTATC+GGG - chr4_1:33626606-33626625 Msa0544730:intron 40.0%
GAAGCTCCGATACTTCAAAA+TGG + chr4_1:33626673-33626692 None:intergenic 40.0%
!! TTGAAGTATCGGAGCTTCAT+AGG - chr4_1:33626675-33626694 Msa0544730:CDS 40.0%
TCTTAGGCACATTTGCTTGA+TGG - chr4_1:33626818-33626837 Msa0544730:intron 40.0%
! GCATTTGTTAATGCCGGATT+TGG - chr4_1:33626905-33626924 Msa0544730:intron 40.0%
TCATTGTACCTGACCAAATC+CGG + chr4_1:33626921-33626940 None:intergenic 40.0%
CCTGCACAACAGTAATTGAA+TGG + chr4_1:33627011-33627030 None:intergenic 40.0%
CCATTCAATTACTGTTGTGC+AGG - chr4_1:33627008-33627027 Msa0544730:intron 40.0%
GCATCAGATTCTTCAAGTAG+TGG - chr4_1:33627048-33627067 Msa0544730:intron 40.0%
TCTTCAAGTAGTGGTTCTTC+TGG - chr4_1:33627057-33627076 Msa0544730:intron 40.0%
!! TTACTATGGGATGTTGACTC+TGG - chr4_1:33627236-33627255 Msa0544730:intron 40.0%
GGATTAGGAATTGCATATGC+TGG - chr4_1:33627519-33627538 Msa0544730:intron 40.0%
! CATCTCAACAAGGTGTTACA+AGG + chr4_1:33627576-33627595 None:intergenic 40.0%
!! GCTTTAGGATCACTCAGAAT+AGG + chr4_1:33627670-33627689 None:intergenic 40.0%
! GCCTTGGTCTTCTTTATCTT+GGG - chr4_1:33627842-33627861 Msa0544730:intron 40.0%
TCCCAAGATAAAGAAGACCA+AGG + chr4_1:33627846-33627865 None:intergenic 40.0%
TCTTCTTTATCTTGGGAAGC+AGG - chr4_1:33627849-33627868 Msa0544730:intron 40.0%
TGTCAGTAATGCAACCACAA+TGG + chr4_1:33627926-33627945 None:intergenic 40.0%
!!! TTAGGAGGGGTTTTGCTATT+AGG - chr4_1:33628003-33628022 Msa0544730:intron 40.0%
!!! AGGGGTTTTGCTATTAGGTT+GGG - chr4_1:33628008-33628027 Msa0544730:intron 40.0%
!! GTAACAACAGGAAAGTGTTG+AGG - chr4_1:33628073-33628092 Msa0544730:intron 40.0%
! TGCGGCAGAAATCTCTATTT+TGG + chr4_1:33628231-33628250 None:intergenic 40.0%
! CATGCAGGTGCAAAATCTTT+TGG - chr4_1:33628284-33628303 Msa0544730:intron 40.0%
TTGCTACCATAGCAATTCCA+AGG + chr4_1:33628362-33628381 None:intergenic 40.0%
TGGAATTGCTATGGTAGCAA+TGG - chr4_1:33628362-33628381 Msa0544730:intron 40.0%
GTAGCAATGGCTGAAGAATT+AGG - chr4_1:33628375-33628394 Msa0544730:intron 40.0%
GCTGTGTATATCAAACCCAA+AGG - chr4_1:33628485-33628504 Msa0544730:intron 40.0%
ATCATGGCTAAGTCTGCTTA+AGG + chr4_1:33628693-33628712 None:intergenic 40.0%
GTTATCTCCTTGGGTCTAAT+AGG - chr4_1:33628823-33628842 Msa0544730:intron 40.0%
ACAAACAATGCTCGAATTGC+CGG - chr4_1:33628853-33628872 Msa0544730:intron 40.0%
TCCCAAATGTACAAGACCTT+GGG + chr4_1:33629023-33629042 None:intergenic 40.0%
TTCCCAAATGTACAAGACCT+TGG + chr4_1:33629024-33629043 None:intergenic 40.0%
! AGGTCTTGTACATTTGGGAA+AGG - chr4_1:33629024-33629043 Msa0544730:intron 40.0%
! GGTCTTGTACATTTGGGAAA+GGG - chr4_1:33629025-33629044 Msa0544730:intron 40.0%
AAGACACGGTCAGAATGATA+AGG + chr4_1:33629067-33629086 None:intergenic 40.0%
CTTACGGTGATAGTAAGACA+CGG + chr4_1:33629081-33629100 None:intergenic 40.0%
! TGTTCTCTACTTCCTCGTTT+TGG - chr4_1:33629320-33629339 Msa0544730:CDS 40.0%
! ACTAGCTTCAAATAGGGGAA+GGG + chr4_1:33629387-33629406 None:intergenic 40.0%
! CCTTCAAGAATTGGTGATAG+GGG + chr4_1:33629703-33629722 None:intergenic 40.0%
CATCACTCTTCCCTATAATC+TGG + chr4_1:33629748-33629767 None:intergenic 40.0%
AAATTCGAATCGAGGGGCTT+TGG + chr4_1:33621093-33621112 None:intergenic 45.0%
CGTGCAGTCAGATGAAGATT+TGG - chr4_1:33621186-33621205 Msa0544730:CDS 45.0%
!! TTTGGCTTTGAAGCAACAGC+TGG - chr4_1:33621204-33621223 Msa0544730:CDS 45.0%
AGCTGGAGTTGTATGTTGAG+AGG - chr4_1:33621221-33621240 Msa0544730:CDS 45.0%
GCTGGAGTTGTATGTTGAGA+GGG - chr4_1:33621222-33621241 Msa0544730:CDS 45.0%
GTTGTATGTTGAGAGGGTTC+AGG - chr4_1:33621228-33621247 Msa0544730:CDS 45.0%
! AGGTTGCTCTTGAAAGCATG+AGG - chr4_1:33621272-33621291 Msa0544730:CDS 45.0%
CGTAGAAACTTCAGTGGCTT+GGG + chr4_1:33621454-33621473 None:intergenic 45.0%
CCAAGCCACTGAAGTTTCTA+CGG - chr4_1:33621452-33621471 Msa0544730:CDS 45.0%
GCCACATTACGGTACTCTTA+AGG - chr4_1:33621474-33621493 Msa0544730:CDS 45.0%
!! GCCTTAAGAGTACCGTAATG+TGG + chr4_1:33621478-33621497 None:intergenic 45.0%
TCCCTCAGCAGACATTGTAA+GGG + chr4_1:33621657-33621676 None:intergenic 45.0%
CTCCCTCTGAACCTAGTAAT+CGG + chr4_1:33621824-33621843 None:intergenic 45.0%
CTAGGTTCAGAGGGAGATAT+TGG - chr4_1:33621828-33621847 Msa0544730:intron 45.0%
!! CAGAGGGAGATATTGGTTCA+TGG - chr4_1:33621835-33621854 Msa0544730:intron 45.0%
!! GAGGGAGATATTGGTTCATG+GGG - chr4_1:33621837-33621856 Msa0544730:intron 45.0%
CATGGGGACATGAGTATGTT+AGG - chr4_1:33621853-33621872 Msa0544730:CDS 45.0%
! GGCTGTTGATCTTTTGATGG+AGG - chr4_1:33622422-33622441 Msa0544730:CDS 45.0%
TCAGGTAATAGGCAAGGCTT+AGG + chr4_1:33622802-33622821 None:intergenic 45.0%
ATGAGCCTGTGTCAGGTAAT+AGG + chr4_1:33622813-33622832 None:intergenic 45.0%
CTTAGAAATGAGCCTGTGTC+AGG + chr4_1:33622820-33622839 None:intergenic 45.0%
CTGACACAGGCTCATTTCTA+AGG - chr4_1:33622818-33622837 Msa0544730:intron 45.0%
ATAGGCTTTCAGGCTTCACT+AGG + chr4_1:33622866-33622885 None:intergenic 45.0%
TCGGTGTGAAATAGGCTTTC+AGG + chr4_1:33622876-33622895 None:intergenic 45.0%
GAAAGCCTATTTCACACCGA+AGG - chr4_1:33622876-33622895 Msa0544730:intron 45.0%
!! TATTGGTGTTGCAAGGCCTT+CGG + chr4_1:33622895-33622914 None:intergenic 45.0%
TAATAGATAGGCCGGCCTAA+CGG - chr4_1:33623067-33623086 Msa0544730:CDS 45.0%
TAAGGCTTATAAGGCCCGTT+AGG + chr4_1:33623085-33623104 None:intergenic 45.0%
GCCTTTATATTAAACGGGCC+GGG - chr4_1:33623151-33623170 Msa0544730:intron 45.0%
ACCCGGCCCGTTTAATATAA+AGG + chr4_1:33623155-33623174 None:intergenic 45.0%
! ATTTAAAACCGAGCTCGACC+CGG + chr4_1:33623172-33623191 None:intergenic 45.0%
!!! GGTCGAGCTCGGTTTTAAAT+AGG - chr4_1:33623172-33623191 Msa0544730:intron 45.0%
!!! AGCTCGGTTTTAAATAGGCC+AGG - chr4_1:33623177-33623196 Msa0544730:intron 45.0%
ACACACACACACACTCTTAG+GGG + chr4_1:33623242-33623261 None:intergenic 45.0%
CACACACACACACACTCTTA+GGG + chr4_1:33623243-33623262 None:intergenic 45.0%
ACACACACACACACACTCTT+AGG + chr4_1:33623244-33623263 None:intergenic 45.0%
!! ATGCAGTGATTCGGTGCTTT+AGG - chr4_1:33623361-33623380 Msa0544730:intron 45.0%
GTTTCAGTCCATTCTGTCAC+AGG + chr4_1:33623705-33623724 None:intergenic 45.0%
ACTAGCATATCATCTGGTCC+AGG + chr4_1:33624017-33624036 None:intergenic 45.0%
CACAGAATCCAGGACTTACA+TGG + chr4_1:33624338-33624357 None:intergenic 45.0%
!!! TGTGGCGAATAGTTTTTGGC+TGG - chr4_1:33624368-33624387 Msa0544730:intron 45.0%
TGCCCGTGATATTGAAGTCA+TGG - chr4_1:33624679-33624698 Msa0544730:intron 45.0%
! TACCAGAGTCCTTTTTCTGC+CGG - chr4_1:33624978-33624997 Msa0544730:intron 45.0%
TAAGCAGAAACAGACAGGGT+TGG - chr4_1:33625294-33625313 Msa0544730:intron 45.0%
!!! CGACATGCATTTTGAAACGG+AGG - chr4_1:33625754-33625773 Msa0544730:intron 45.0%
CTAAAGCAACAACTGTCTCG+AGG - chr4_1:33625936-33625955 Msa0544730:intron 45.0%
AACTTTGTGCAACCTGCTGA+AGG - chr4_1:33626029-33626048 Msa0544730:intron 45.0%
TCCGAATCGTATCTCGTATC+CGG + chr4_1:33626104-33626123 None:intergenic 45.0%
! ACTGCACCGATATGTCGATA+CGG - chr4_1:33626130-33626149 Msa0544730:CDS 45.0%
GGATGTATTGAGGCAGGTAT+CGG - chr4_1:33626487-33626506 Msa0544730:CDS 45.0%
GATACTTCCCGATACGTATC+AGG + chr4_1:33626537-33626556 None:intergenic 45.0%
! TGTTAATGCCGGATTTGGTC+AGG - chr4_1:33626910-33626929 Msa0544730:intron 45.0%
! GTAGTGGTTCTTCTGGAAAC+TGG - chr4_1:33627064-33627083 Msa0544730:intron 45.0%
GTAATGCACCAGCAATGACA+TGG + chr4_1:33627301-33627320 None:intergenic 45.0%
TGTCATTGCTGGTGCATTAC+TGG - chr4_1:33627301-33627320 Msa0544730:intron 45.0%
GTCATTGCTGGTGCATTACT+GGG - chr4_1:33627302-33627321 Msa0544730:intron 45.0%
AAACCTCACCTGCTCATTCT+GGG + chr4_1:33627547-33627566 None:intergenic 45.0%
AAAACCTCACCTGCTCATTC+TGG + chr4_1:33627548-33627567 None:intergenic 45.0%
AAGCGACAAGCATCTCAACA+AGG + chr4_1:33627586-33627605 None:intergenic 45.0%
ATCACGTCAAGCGAAGCTTT+AGG + chr4_1:33627685-33627704 None:intergenic 45.0%
TGCCTTCACTGCAATTGCAT+TGG - chr4_1:33627705-33627724 Msa0544730:intron 45.0%
GCCTTCACTGCAATTGCATT+GGG - chr4_1:33627706-33627725 Msa0544730:intron 45.0%
TGCATTGGGCTTGATTTACG+TGG - chr4_1:33627720-33627739 Msa0544730:intron 45.0%
GCATTGGGCTTGATTTACGT+GGG - chr4_1:33627721-33627740 Msa0544730:intron 45.0%
TTACGTGGGTTCTTGCAATG+AGG - chr4_1:33627735-33627754 Msa0544730:intron 45.0%
AAAGAAGACCAAGGCCAAGA+GGG + chr4_1:33627837-33627856 None:intergenic 45.0%
TAAAGAAGACCAAGGCCAAG+AGG + chr4_1:33627838-33627857 None:intergenic 45.0%
! GGCCTTGGTCTTCTTTATCT+TGG - chr4_1:33627841-33627860 Msa0544730:intron 45.0%
!!! GAGGGGTTTTGCTATTAGGT+TGG - chr4_1:33628007-33628026 Msa0544730:intron 45.0%
CTACTATCATGTGCCTATGC+TGG - chr4_1:33628155-33628174 Msa0544730:intron 45.0%
AACATTCCCAGTTCCAGCAT+AGG + chr4_1:33628171-33628190 None:intergenic 45.0%
TGGAACTGGGAATGTTCTCA+AGG - chr4_1:33628175-33628194 Msa0544730:CDS 45.0%
TGCTGGTGCTTATTTCATGC+AGG - chr4_1:33628269-33628288 Msa0544730:intron 45.0%
ATAGCAATTCCAAGGACTGC+AGG + chr4_1:33628354-33628373 None:intergenic 45.0%
TGCAGTCCTTGGAATTGCTA+TGG - chr4_1:33628353-33628372 Msa0544730:intron 45.0%
ATGCAGGGTTGCAAACCTTT+GGG + chr4_1:33628503-33628522 None:intergenic 45.0%
AATGCAGGGTTGCAAACCTT+TGG + chr4_1:33628504-33628523 None:intergenic 45.0%
TGAAAGATTGCGAAGCATGC+CGG + chr4_1:33628875-33628894 None:intergenic 45.0%
! TCTTTTCTACGCTACAGGTG+CGG - chr4_1:33628993-33629012 Msa0544730:intron 45.0%
! TGCCCAAGGTCTTGTACATT+TGG - chr4_1:33629018-33629037 Msa0544730:intron 45.0%
! GCCCAAGGTCTTGTACATTT+GGG - chr4_1:33629019-33629038 Msa0544730:intron 45.0%
GAAAGGAACGTAATGCCGAT+TGG + chr4_1:33629211-33629230 None:intergenic 45.0%
GAGACTCAAACAAACCTGCA+TGG + chr4_1:33629346-33629365 None:intergenic 45.0%
!! GACTAGCTTCAAATAGGGGA+AGG + chr4_1:33629388-33629407 None:intergenic 45.0%
ATACTCTGTTGTAACAGCCG+AGG - chr4_1:33629414-33629433 Msa0544730:intron 45.0%
TCCACAGTCAACAACATCCT+CGG + chr4_1:33629434-33629453 None:intergenic 45.0%
! GATGTTGTTGACTGTGGATG+AGG - chr4_1:33629436-33629455 Msa0544730:intron 45.0%
TGAAAGCCGGTGATTGTCTT+AGG + chr4_1:33629530-33629549 None:intergenic 45.0%
GGTAGAATGAGTCTGAAAGC+CGG + chr4_1:33629543-33629562 None:intergenic 45.0%
CCCCTATCACCAATTCTTGA+AGG - chr4_1:33629700-33629719 Msa0544730:CDS 45.0%
!! AATTAAAATTAGTAAAAAAT+TGG + chr4_1:33622377-33622396 None:intergenic 5.0%
!!! TTTTTTTTTTTGTTTTTTTT+TGG - chr4_1:33625458-33625477 Msa0544730:intron 5.0%
!!! TTTTTTTTTTGTTTTTTTTT+GGG - chr4_1:33625459-33625478 Msa0544730:intron 5.0%
!! TAAAAAAATTATAAAAAGTA+GGG - chr4_1:33625692-33625711 Msa0544730:intron 5.0%
!! TATATTTGTATATTAAAAAA+TGG + chr4_1:33626239-33626258 None:intergenic 5.0%
!! AAAAAATAAAATTTAATCTT+TGG - chr4_1:33626573-33626592 Msa0544730:intron 5.0%
!! TCTCGCGAGTTGAGTTTTGC+TGG + chr4_1:33620888-33620907 None:intergenic 50.0%
TCACACTTCCTCTTCTCCGA+TGG - chr4_1:33620966-33620985 Msa0544730:three_prime_UTR 50.0%
! TTTTGCGGCAGCTTCGTCTT+TGG + chr4_1:33621040-33621059 None:intergenic 50.0%
GAAGATCGAGAGCGAAGATC+TGG - chr4_1:33621062-33621081 Msa0544730:CDS 50.0%
AAGAGCAACCTTCTGCAACC+CGG + chr4_1:33621263-33621282 None:intergenic 50.0%
CCGTAGAAACTTCAGTGGCT+TGG + chr4_1:33621455-33621474 None:intergenic 50.0%
TGTGGCCGTAGAAACTTCAG+TGG + chr4_1:33621460-33621479 None:intergenic 50.0%
GCCCTTACAATGTCTGCTGA+GGG - chr4_1:33621653-33621672 Msa0544730:intron 50.0%
CTCCCTCAGCAGACATTGTA+AGG + chr4_1:33621658-33621677 None:intergenic 50.0%
CAATGTCTGCTGAGGGAGAA+CGG - chr4_1:33621660-33621679 Msa0544730:intron 50.0%
AATGTCTGCTGAGGGAGAAC+GGG - chr4_1:33621661-33621680 Msa0544730:intron 50.0%
ACTTTGCCAATGACTCTGCC+AGG - chr4_1:33621785-33621804 Msa0544730:intron 50.0%
GACTTTCCTGGCAGAGTCAT+TGG + chr4_1:33621794-33621813 None:intergenic 50.0%
! GGCGCCAATTGATGATCTCA+TGG - chr4_1:33622234-33622253 Msa0544730:intron 50.0%
GCAGCATAATGCTGAACCAG+AGG - chr4_1:33622401-33622420 Msa0544730:CDS 50.0%
AGCTAGGTAAGTCAGACCTC+TGG - chr4_1:33622610-33622629 Msa0544730:CDS 50.0%
CCTGTGTCAGGTAATAGGCA+AGG + chr4_1:33622808-33622827 None:intergenic 50.0%
CCTTGCCTATTACCTGACAC+AGG - chr4_1:33622805-33622824 Msa0544730:intron 50.0%
! CAAGGCCTTCGGTGTGAAAT+AGG + chr4_1:33622884-33622903 None:intergenic 50.0%
AATAGATAGGCCGGCCTAAC+GGG - chr4_1:33623068-33623087 Msa0544730:CDS 50.0%
! GGGCCTTATAAGCCTTAGCA+TGG - chr4_1:33623088-33623107 Msa0544730:CDS 50.0%
ACACACACACTCTTAGGGGT+GGG + chr4_1:33623238-33623257 None:intergenic 50.0%
! TATAGTCATTGGCCTGGCTC+TGG - chr4_1:33623873-33623892 Msa0544730:CDS 50.0%
!! CGAAGAACGAGAAGTGTTGC+AGG - chr4_1:33624613-33624632 Msa0544730:intron 50.0%
! ACCAGAGTCCTTTTTCTGCC+GGG - chr4_1:33624979-33624998 Msa0544730:intron 50.0%
!!! TTTTTCTGCCGGGTACTGGA+GGG - chr4_1:33624989-33625008 Msa0544730:intron 50.0%
! CTCGAGGCATCCTGTTAAAC+AGG - chr4_1:33625952-33625971 Msa0544730:intron 50.0%
TCTACACAGGTTCCTTCAGC+AGG + chr4_1:33626044-33626063 None:intergenic 50.0%
CCGAATCGTATCTCGTATCC+GGG + chr4_1:33626103-33626122 None:intergenic 50.0%
CCCGGATACGAGATACGATT+CGG - chr4_1:33626100-33626119 Msa0544730:CDS 50.0%
! CTGCACCGATATGTCGATAC+GGG - chr4_1:33626131-33626150 Msa0544730:CDS 50.0%
TGTTGATGTGCTACGAGCCT+AGG + chr4_1:33626284-33626303 None:intergenic 50.0%
!! GGGAAGTATCGGGCAAGTAT+CGG - chr4_1:33626616-33626635 Msa0544730:intron 50.0%
GGGCAGAAGCAAATCAACAG+AGG + chr4_1:33626773-33626792 None:intergenic 50.0%
TGCTGCTGCAAGTCTGGTAT+GGG - chr4_1:33627119-33627138 Msa0544730:intron 50.0%
!! AGGAGTGCCATTGCCTACAA+TGG + chr4_1:33627447-33627466 None:intergenic 50.0%
TTGTAGGCAATGGCACTCCT+TGG - chr4_1:33627447-33627466 Msa0544730:intron 50.0%
GCCCAATGCAATTGCAGTGA+AGG + chr4_1:33627710-33627729 None:intergenic 50.0%
GATCGGAGTGAGTCAGAGTT+GGG - chr4_1:33627790-33627809 Msa0544730:intron 50.0%
TTTGGCACTCCCACCATACT+AGG - chr4_1:33627882-33627901 Msa0544730:intron 50.0%
TCATGTGCCTATGCTGGAAC+TGG - chr4_1:33628161-33628180 Msa0544730:CDS 50.0%
CATGTGCCTATGCTGGAACT+GGG - chr4_1:33628162-33628181 Msa0544730:CDS 50.0%
GACAAAGGTGAGATGCACCA+AGG - chr4_1:33628327-33628346 Msa0544730:intron 50.0%
ACAGGCAGCAGTTATCTCCT+TGG - chr4_1:33628813-33628832 Msa0544730:intron 50.0%
CAGGCAGCAGTTATCTCCTT+GGG - chr4_1:33628814-33628833 Msa0544730:intron 50.0%
! TTTTACAGGACAGCGCTTGC+AGG - chr4_1:33629234-33629253 Msa0544730:intron 50.0%
AAACCTGCATGGCCAAAACG+AGG + chr4_1:33629335-33629354 None:intergenic 50.0%
AGCCTCTATCAGTGCCTGTT+CGG - chr4_1:33629465-33629484 Msa0544730:intron 50.0%
GTCCAACAACGTCTACTGCT+TGG + chr4_1:33629496-33629515 None:intergenic 50.0%
AGCAGTAGACGTTGTTGGAC+AGG - chr4_1:33629496-33629515 Msa0544730:CDS 50.0%
GGTCGTCCTAAGACAATCAC+CGG - chr4_1:33629521-33629540 Msa0544730:CDS 50.0%
TCATTCTACCCCTGTTCTCC+TGG - chr4_1:33629553-33629572 Msa0544730:CDS 50.0%
AGGGTTCAGGATACTGACCC+CGG - chr4_1:33621241-33621260 Msa0544730:CDS 55.0%
AGAGCAACCTTCTGCAACCC+GGG + chr4_1:33621262-33621281 None:intergenic 55.0%
!! TGGCTTGGGCACTGAAGTCA+TGG + chr4_1:33621440-33621459 None:intergenic 55.0%
GGCCCTTACAATGTCTGCTG+AGG - chr4_1:33621652-33621671 Msa0544730:intron 55.0%
GCTTATAAGGCCCGTTAGGC+CGG + chr4_1:33623081-33623100 None:intergenic 55.0%
GGTGGGAATAGTCCAGGCTA+AGG + chr4_1:33623221-33623240 None:intergenic 55.0%
CTTAGGGGTGGGAATAGTCC+AGG + chr4_1:33623227-33623246 None:intergenic 55.0%
CACACACACACTCTTAGGGG+TGG + chr4_1:33623239-33623258 None:intergenic 55.0%
ATAACCTGCTGGTGCGACAC+TGG - chr4_1:33624111-33624130 Msa0544730:intron 55.0%
AATTCCAGTGTCGCACCAGC+AGG + chr4_1:33624118-33624137 None:intergenic 55.0%
GGTCTTGCTGACAGCATGTG+AGG - chr4_1:33624250-33624269 Msa0544730:intron 55.0%
CTTGCACGCCATGTAAGTCC+TGG - chr4_1:33624327-33624346 Msa0544730:intron 55.0%
ACCCGGCAGAAAAAGGACTC+TGG + chr4_1:33624983-33625002 None:intergenic 55.0%
! GTCCTTTTTCTGCCGGGTAC+TGG - chr4_1:33624985-33625004 Msa0544730:intron 55.0%
CTCCAGTACCCGGCAGAAAA+AGG + chr4_1:33624990-33625009 None:intergenic 55.0%
!!! CTTTTTCTGCCGGGTACTGG+AGG - chr4_1:33624988-33625007 Msa0544730:intron 55.0%
GGTCTTAACCCTCCAGTACC+CGG + chr4_1:33625000-33625019 None:intergenic 55.0%
TGGTTGTGCTCTGTGAAGCC+CGG - chr4_1:33626082-33626101 Msa0544730:CDS 55.0%
ATGTGCTACGAGCCTAGGAC+TGG + chr4_1:33626279-33626298 None:intergenic 55.0%
!! ATTGAGGCAGGTATCGGTGC+AGG - chr4_1:33626493-33626512 Msa0544730:intron 55.0%
!! TATCGGGCAAGTATCGGTGC+AGG - chr4_1:33626622-33626641 Msa0544730:intron 55.0%
!! AGTATCGGTGCAGGATACGC+AGG - chr4_1:33626631-33626650 Msa0544730:intron 55.0%
! GTATCGGTGCAGGATACGCA+GGG - chr4_1:33626632-33626651 Msa0544730:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG - chr4_1:33626633-33626652 Msa0544730:intron 55.0%
CACTTGCACCAGCACTTGCA+CGG + chr4_1:33626844-33626863 None:intergenic 55.0%
! GACTAGTGCTGCTGCAAGTC+TGG - chr4_1:33627113-33627132 Msa0544730:intron 55.0%
! GTGCTGCTGCAAGTCTGGTA+TGG - chr4_1:33627118-33627137 Msa0544730:intron 55.0%
GCTGGTGCATTACTGGGAGT+TGG - chr4_1:33627308-33627327 Msa0544730:intron 55.0%
!! TGCTGGTTCCCAGAATGAGC+AGG - chr4_1:33627536-33627555 Msa0544730:intron 55.0%
GTTCCCAGAATGAGCAGGTG+AGG - chr4_1:33627541-33627560 Msa0544730:intron 55.0%
GGATCGGAGTGAGTCAGAGT+TGG - chr4_1:33627789-33627808 Msa0544730:intron 55.0%
AGAGGGAGAAGTCGCGTAAG+AGG + chr4_1:33627820-33627839 None:intergenic 55.0%
CTTACGCGACTTCTCCCTCT+TGG - chr4_1:33627820-33627839 Msa0544730:intron 55.0%
ACTCCCACCATACTAGGTCC+AGG - chr4_1:33627888-33627907 Msa0544730:intron 55.0%
CTCCCACCATACTAGGTCCA+GGG - chr4_1:33627889-33627908 Msa0544730:intron 55.0%
TGCCCTGGACCTAGTATGGT+GGG + chr4_1:33627894-33627913 None:intergenic 55.0%
ACCATACTAGGTCCAGGGCA+GGG - chr4_1:33627894-33627913 Msa0544730:intron 55.0%
TTCCAAGGACTGCAGGACCT+TGG + chr4_1:33628347-33628366 None:intergenic 55.0%
TATTCGCCGAGCAGTTCCTC+TGG - chr4_1:33628452-33628471 Msa0544730:intron 55.0%
CAAGTGCCAGAGGAACTGCT+CGG + chr4_1:33628461-33628480 None:intergenic 55.0%
TCCTTGGGTCTAATAGGCGC+TGG - chr4_1:33628829-33628848 Msa0544730:intron 55.0%
TCCAGCGCCTATTAGACCCA+AGG + chr4_1:33628833-33628852 None:intergenic 55.0%
!! CTTCCTCGTTTTGGCCATGC+AGG - chr4_1:33629329-33629348 Msa0544730:CDS 55.0%
! GCCGAGGATGTTGTTGACTG+TGG - chr4_1:33629430-33629449 Msa0544730:intron 55.0%
GCCTCTATCAGTGCCTGTTC+GGG - chr4_1:33629466-33629485 Msa0544730:intron 55.0%
!! ACCCGAACAGGCACTGATAG+AGG + chr4_1:33629470-33629489 None:intergenic 55.0%
CTATCAGTGCCTGTTCGGGT+TGG - chr4_1:33629470-33629489 Msa0544730:intron 55.0%
GGCCAAGCAGTAGACGTTGT+TGG - chr4_1:33629491-33629510 Msa0544730:CDS 55.0%
GTAGACGTTGTTGGACAGGC+AGG - chr4_1:33629500-33629519 Msa0544730:CDS 55.0%
TTCGGGAGCCATCGGAGAAG+AGG + chr4_1:33620977-33620996 None:intergenic 60.0%
CGGTTAGGTTCGGGAGCCAT+CGG + chr4_1:33620985-33621004 None:intergenic 60.0%
TGCGGCAGCTTCGTCTTTGG+CGG + chr4_1:33621037-33621056 None:intergenic 60.0%
GGGTTCAGGATACTGACCCC+GGG - chr4_1:33621242-33621261 Msa0544730:CDS 60.0%
TACTGACCCCGGGTTGCAGA+AGG - chr4_1:33621252-33621271 Msa0544730:CDS 60.0%
GAGCAACCTTCTGCAACCCG+GGG + chr4_1:33621261-33621280 None:intergenic 60.0%
! CTTGATGGCCGTGCAAGTGC+TGG - chr4_1:33626833-33626852 Msa0544730:intron 60.0%
CGACTTCTCCCTCTTGGCCT+TGG - chr4_1:33627826-33627845 Msa0544730:intron 60.0%
CTGCCCTGGACCTAGTATGG+TGG + chr4_1:33627895-33627914 None:intergenic 60.0%
CACCATACTAGGTCCAGGGC+AGG - chr4_1:33627893-33627912 Msa0544730:intron 60.0%
ACCCTGCCCTGGACCTAGTA+TGG + chr4_1:33627898-33627917 None:intergenic 60.0%
TACTAGGTCCAGGGCAGGGT+TGG - chr4_1:33627898-33627917 Msa0544730:intron 60.0%
CAATGGATCCAACCCTGCCC+TGG + chr4_1:33627909-33627928 None:intergenic 60.0%
GGGCAGGGTTGGATCCATTG+TGG - chr4_1:33627909-33627928 Msa0544730:intron 60.0%
CACCAAGGTCCTGCAGTCCT+TGG - chr4_1:33628342-33628361 Msa0544730:CDS 60.0%
CGAGCAGTTCCTCTGGCACT+TGG - chr4_1:33628459-33628478 Msa0544730:intron 60.0%
CACAGCAGACCAAGTGCCAG+AGG + chr4_1:33628471-33628490 None:intergenic 60.0%
! CTACAGGTGCGGATTGCCCA+AGG - chr4_1:33629004-33629023 Msa0544730:intron 60.0%
AGGGGAAGGGAGACAGAGAG+AGG + chr4_1:33629374-33629393 None:intergenic 60.0%
ACTGCTTGGCCAACCCGAAC+AGG + chr4_1:33629482-33629501 None:intergenic 60.0%
TTCTCCTGGCTGCTGGGGAT+AGG - chr4_1:33629567-33629586 Msa0544730:intron 60.0%
TCTCCTGGCTGCTGGGGATA+GGG - chr4_1:33629568-33629587 Msa0544730:intron 60.0%
TTGCCGGCGCGGTTAGGTTC+GGG + chr4_1:33620994-33621013 None:intergenic 65.0%
GTTGCCGGCGCGGTTAGGTT+CGG + chr4_1:33620995-33621014 None:intergenic 65.0%
! GAACCTAACCGCGCCGGCAA+CGG - chr4_1:33620994-33621013 Msa0544730:exon 65.0%
!! TTCGTCTTTGGCGGTGCCGC+TGG + chr4_1:33621028-33621047 None:intergenic 65.0%
TAAACGGGCCGGGTCGAGCT+CGG - chr4_1:33623161-33623180 Msa0544730:intron 65.0%
ACCCCTGTTCTCCTGGCTGC+TGG - chr4_1:33629560-33629579 Msa0544730:CDS 65.0%
CCCAGCAGCCAGGAGAACAG+GGG + chr4_1:33629564-33629583 None:intergenic 65.0%
CCCCTGTTCTCCTGGCTGCT+GGG - chr4_1:33629561-33629580 Msa0544730:CDS 65.0%
CCCCAGCAGCCAGGAGAACA+GGG + chr4_1:33629565-33629584 None:intergenic 65.0%
CCCTGTTCTCCTGGCTGCTG+GGG - chr4_1:33629562-33629581 Msa0544730:CDS 65.0%
TCCCCAGCAGCCAGGAGAAC+AGG + chr4_1:33629566-33629585 None:intergenic 65.0%
GCTCCCGAACCTAACCGCGC+CGG - chr4_1:33620988-33621007 Msa0544730:three_prime_UTR 70.0%
!! TTTGGCGGTGCCGCTGGTGC+TGG + chr4_1:33621022-33621041 None:intergenic 70.0%
CTGCCCTATCCCCAGCAGCC+AGG + chr4_1:33629574-33629593 None:intergenic 70.0%
!! GCTGGTGCTGGCGCCGTTGC+CGG + chr4_1:33621010-33621029 None:intergenic 75.0%
GGCAACGGCGCCAGCACCAG+CGG - chr4_1:33621009-33621028 Msa0544730:exon 75.0%
! GCGCCGTTGCCGGCGCGGTT+AGG + chr4_1:33621000-33621019 None:intergenic 80.0%
! TGCTGGCGCCGTTGCCGGCG+CGG + chr4_1:33621005-33621024 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33620793 33629982 33620793 ID=Msa0544730;Name=Msa0544730
chr4_1 mRNA 33620793 33629982 33620793 ID=Msa0544730-mRNA-1;Parent=Msa0544730;Name=Msa0544730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=192|0.95|1|1|0.95|1|24|217|864
chr4_1 exon 33620793 33621082 33620793 ID=Msa0544730-mRNA-1:exon:8653;Parent=Msa0544730-mRNA-1
chr4_1 exon 33621166 33621344 33621166 ID=Msa0544730-mRNA-1:exon:8652;Parent=Msa0544730-mRNA-1
chr4_1 exon 33621425 33621533 33621425 ID=Msa0544730-mRNA-1:exon:8651;Parent=Msa0544730-mRNA-1
chr4_1 exon 33621680 33621765 33621680 ID=Msa0544730-mRNA-1:exon:8650;Parent=Msa0544730-mRNA-1
chr4_1 exon 33621845 33621958 33621845 ID=Msa0544730-mRNA-1:exon:8649;Parent=Msa0544730-mRNA-1
chr4_1 exon 33622042 33622101 33622042 ID=Msa0544730-mRNA-1:exon:8648;Parent=Msa0544730-mRNA-1
chr4_1 exon 33622269 33622484 33622269 ID=Msa0544730-mRNA-1:exon:8647;Parent=Msa0544730-mRNA-1
chr4_1 exon 33622579 33622692 33622579 ID=Msa0544730-mRNA-1:exon:8646;Parent=Msa0544730-mRNA-1
chr4_1 exon 33622905 33623126 33622905 ID=Msa0544730-mRNA-1:exon:8645;Parent=Msa0544730-mRNA-1
chr4_1 exon 33623218 33623322 33623218 ID=Msa0544730-mRNA-1:exon:8644;Parent=Msa0544730-mRNA-1
chr4_1 exon 33623408 33623548 33623408 ID=Msa0544730-mRNA-1:exon:8643;Parent=Msa0544730-mRNA-1
chr4_1 exon 33623641 33623745 33623641 ID=Msa0544730-mRNA-1:exon:8642;Parent=Msa0544730-mRNA-1
chr4_1 exon 33623844 33623951 33623844 ID=Msa0544730-mRNA-1:exon:8641;Parent=Msa0544730-mRNA-1
chr4_1 exon 33626045 33626203 33626045 ID=Msa0544730-mRNA-1:exon:8640;Parent=Msa0544730-mRNA-1
chr4_1 exon 33626437 33626511 33626437 ID=Msa0544730-mRNA-1:exon:8639;Parent=Msa0544730-mRNA-1
chr4_1 exon 33626654 33626768 33626654 ID=Msa0544730-mRNA-1:exon:8638;Parent=Msa0544730-mRNA-1
chr4_1 exon 33628160 33628242 33628160 ID=Msa0544730-mRNA-1:exon:8637;Parent=Msa0544730-mRNA-1
chr4_1 exon 33628332 33628370 33628332 ID=Msa0544730-mRNA-1:exon:8636;Parent=Msa0544730-mRNA-1
chr4_1 exon 33628684 33628726 33628684 ID=Msa0544730-mRNA-1:exon:8635;Parent=Msa0544730-mRNA-1
chr4_1 exon 33628901 33628968 33628901 ID=Msa0544730-mRNA-1:exon:8634;Parent=Msa0544730-mRNA-1
chr4_1 exon 33629093 33629152 33629093 ID=Msa0544730-mRNA-1:exon:8633;Parent=Msa0544730-mRNA-1
chr4_1 exon 33629244 33629364 33629244 ID=Msa0544730-mRNA-1:exon:8632;Parent=Msa0544730-mRNA-1
chr4_1 exon 33629482 33629582 33629482 ID=Msa0544730-mRNA-1:exon:8631;Parent=Msa0544730-mRNA-1
chr4_1 exon 33629692 33629982 33629692 ID=Msa0544730-mRNA-1:exon:8630;Parent=Msa0544730-mRNA-1
chr4_1 five_prime_UTR 33629791 33629982 33629791 ID=Msa0544730-mRNA-1:five_prime_utr;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33629692 33629790 33629692 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33629482 33629582 33629482 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33629244 33629364 33629244 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33629093 33629152 33629093 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33628901 33628968 33628901 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33628684 33628726 33628684 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33628332 33628370 33628332 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33628160 33628242 33628160 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33626654 33626768 33626654 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33626437 33626511 33626437 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33626045 33626203 33626045 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33623844 33623951 33623844 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33623641 33623745 33623641 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33623408 33623548 33623408 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33623218 33623322 33623218 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33622905 33623126 33622905 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33622579 33622692 33622579 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33622269 33622484 33622269 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33622042 33622101 33622042 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33621845 33621958 33621845 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33621680 33621765 33621680 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33621425 33621533 33621425 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33621166 33621344 33621166 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 CDS 33621010 33621082 33621010 ID=Msa0544730-mRNA-1:cds;Parent=Msa0544730-mRNA-1
chr4_1 three_prime_UTR 33620793 33621009 33620793 ID=Msa0544730-mRNA-1:three_prime_utr;Parent=Msa0544730-mRNA-1
Gene Sequence

>Msa0544730

ATGGCTCCCGAACCTAACCGCGCCGGCAACGGCGCCAGCACCAGCGGCACCGCCAAAGACGAAGCTGCCGCAAAAAAGAAGATCGAGAGCGAAGATCTGTCAGATGAAGATTTGGCTTTGAAGCAACAGCTGGAGTTGTATGTTGAGAGGGTTCAGGATACTGACCCCGGGTTGCAGAAGGTTGCTCTTGAAAGCATGAGACAAGAAATCCGTACTTCTACAAGCTCCATGACTTCAGTGCCCAAGCCACTGAAGTTTCTACGGCCACATTACGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGAGTTAAAGAAGTATTTGGCTGACATATTATCAGTATTGGCCCTTACAATGTCTGCTGAGGGAGAACGGGAAAGTCTCAAATACCGATTACTAGGTTCAGAGGGAGATATTGGTTCATGGGGACATGAGTATGTTAGAAATTTGGCTGGAGAAATTGCTCAAGAATATGCAAAACGACAGCATAATGCTGAACCAGAGGCTGTTGATCTTTTGATGGAGGTTGAGGACTTAGATATGTTGACTGAGCATGTTGACAAAACAAACTTTAAAAGGACTTGCTTGTATCTGACAAGTTCAGCTAGGTATCTTCCTGGACCAGATGATATGCTAGTATTGGACATTGCATTTTCAATCTATCTAAAATTTGAAGAATTTCCAAATGCACTGCAAATTGCATTGTTCATGGATAACCTGCTGCATGTGAGGACAGTGTTCACTTCTTGTCATGATGTGCTGCGAAAGAAGCAATTCTGTTACATACTTGCACGCCATGGAATCACTTTTGAGCTTGACGAGGAAATGGTTAACGATGACGAAGAACGAGAAGTGTTGCAGGATATCATCAACAATTCCAAGTTAAGTGAAGGATATTTGACTCTTGCCCGTGATATTGAAGTCATGGAGCCTAAGTCCCCTGAAGATATATACAAGGCACATTTGCTTGATGGCCGTGCAAGTGCTGGTGCAAGTGTTGACTCAGCTAGACAGAACCTTGCTGCTACTTTTGTTAATGCATTTGTTAATGCCGGATTTGGTCAGGATAAGTTAATGACTGTTGCATCAGATTCTTCAAGTAGTGGTTCTTCTGGAAACTGGCTTTTTAAAAACAAGGAGCATGGAAAGACTAGTGCTGCTGCAAGTCTGGGTATGATTTTACTATGGGATGTTGACTCTGGACTTGCACAACTTGACAAATACTTCCATAGTAATGATAACCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTCAATTGTAGTATCAAGAATGACTGTGATCCTGCAATGGCACTCCTTGGTGATTTTATTGAAAAAGAAGATAGTTCGACTAGAATTGGTGCAATTATGGGATTAGGAATTGCATATGCTGGTTCCCAGAATGAGCAGTTACGATACAAGTTGGCACCTATTCTGAGTGATCCTAAAGCTTCGCTTGACGTGATTGCCTTCACTGCAATTGCATTGGGCTTGATTTACGTGGGTTCTTGCAATGAGGAAGTTGCTCAAGCAATCATATTTACATTGATGGATCGGAGTGAGTCAGAGTTGGGAGAGCCTCTTACGCGACTTCTCCCTCTTGGCCTTGGTCTTCTTTATCTTGGGAAGCAGGAAAGTGTTGAGGCAACTGCCGAAGTTTCAAAGACTTTTAATGAAAAAATAAGAAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGGAATGTTCTCAAGGTGCAAAATCTTTTGGGTCATTGTTCACAACATCTTGACAAAGGTGAGATGCACCAAGGTCCTGCAGTCCTTGGAATTGCTATGGTAGCAATGGCTGAAGAATTAGGTGTTGAGATGGCTATCCGATCGTTAGAACATCTTCTACAGTATGGAGAGCAGAATATTCGCCGAGCAGTTCCTCTGGCACTTGGTCTGCTGTGTATATCAAACCCAAAGGTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGATACTGATTCAGAAGTTGCAATGGCAGCAGTTATCTCCTTGGGTCTAATAGGCGCTGGAACAAACAATGCTCGAATTGCCGGCATGCTTCGCAATCTTTCAAGCTATTACTACAAGGATACCAGCCTTCTATTTTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGACTATTAACACTTAATCCTTATCATTCTGACCGTGTCTTACTATCACCGACAGCGCTTGCAGGACTAATTACTATGTTGCATGCATGCCTTGATATGAAAGCTATTGTGTTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCCATGCAGCCGAGGATGTTGTTGACTGTGGATGAGGACTTGAAGCCTCTATCAGTGCCTGTTCGGGTTGGCCAAGCAGTAGACGTTGTTGGACAGGCAGGTCGTCCTAAGACAATCACCGGCTTTCAGACTCATTCTACCCCTGTTCTCCTGGCTGCTGGGGATAGGGCAGAGCTAGCCACAGAAAAATATCTTCCCCTATCACCAATTCTTGAAGGTTTTGTAATTTTAAAGGACAATCCAGATTATAGGGAAGAGTGA
Protein sequence

>Msa0544730

MAPEPNRAGNGASTSGTAKDEAAAKKKIESEDLSDEDLALKQQLELYVERVQDTDPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMAESELKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQHNAEPEAVDLLMEVEDLDMLTEHVDKTNFKRTCLYLTSSARYLPGPDDMLVLDIAFSIYLKFEEFPNALQIALFMDNLLHVRTVFTSCHDVLRKKQFCYILARHGITFELDEEMVNDDEEREVLQDIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASDSSSSGSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDFIEKEDSSTRIGAIMGLGIAYAGSQNEQLRYKLAPILSDPKASLDVIAFTAIALGLIYVGSCNEEVAQAIIFTLMDRSESELGEPLTRLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGEMHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRVLLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDEDLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYLPLSPILEGFVILKDNPDYREE*