AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648830 MtrunA17_Chr4g0040471 97.178 886 3 1 1 864 1 886 0.0 1757
Msa0648830 MtrunA17_Chr8g0392281 22.622 473 300 14 343 793 379 807 9.06e-15 79.0
Msa0648830 MtrunA17_Chr2g0311201 22.410 473 301 14 343 793 377 805 5.30e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648830 AT2G20580.1 81.271 897 129 5 1 864 1 891 0.0 1457
Msa0648830 AT4G28470.1 79.171 893 149 4 3 864 5 891 0.0 1432
Msa0648830 AT4G08140.1 80.000 70 14 0 51 120 2 71 2.47e-30 115
Msa0648830 AT1G04810.1 22.766 470 304 14 343 793 377 806 2.67e-14 77.8
Msa0648830 AT2G32730.1 22.766 470 304 14 343 793 377 806 3.07e-14 77.8

Find 229 sgRNAs with CRISPR-Local

Find 641 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATGGTGTCAGAAATT+TGG 0.163690 4_3:-55349929 Msa0648830:intron
GACTAGAATTGGTGCAATTA+TGG 0.180764 4_3:-55344456 Msa0648830:CDS
TTGACAAAACAAACTTTAAA+AGG 0.192273 4_3:-55349400 Msa0648830:CDS
GGCCTTGGTCTTCTTTATCT+TGG 0.200767 4_3:-55344112 Msa0648830:CDS
CATGCAGGTGCAAAATCTTT+TGG 0.202835 4_3:-55343678 Msa0648830:intron
AAAACCTCACCTGCTCATTC+TGG 0.227874 4_3:+55344408 None:intergenic
TAAAGGACAATCCAGATTAT+AGG 0.228060 4_3:-55342228 Msa0648830:CDS
ACCCCTGTTCTCCTGGCTGC+TGG 0.245592 4_3:-55342402 Msa0648830:CDS
GCTGGTGCTGGCGCCGTTGC+CGG 0.280560 4_3:+55350954 None:intergenic
TCTTCAAGTAGTGGTTCTTC+TGG 0.284064 4_3:-55344896 Msa0648830:CDS
AGCAATCATATTTACATTGA+TGG 0.285349 4_3:-55344185 Msa0648830:CDS
AAATACTATCAAAATGTAAA+AGG 0.288699 4_3:-55342128 Msa0648830:three_prime_UTR
GCCTTCACTGCAATTGCATT+GGG 0.289158 4_3:-55344247 Msa0648830:CDS
TGCCCAAGGTCTTGTACATT+TGG 0.290221 4_3:-55342944 Msa0648830:CDS
GCATTTGTTAATGCCGGATT+TGG 0.293129 4_3:-55345048 Msa0648830:CDS
GCGCCGTTGCCGGCGCGGTT+AGG 0.294433 4_3:+55350964 None:intergenic
TGTCATTGCTGGTGCATTAC+TGG 0.297812 4_3:-55344652 Msa0648830:CDS
CTAGGTTCAGAGGGAGATAT+TGG 0.298113 4_3:-55350135 Msa0648830:CDS
TCTTAGGCACATTTGCTTGA+TGG 0.300355 4_3:-55345135 Msa0648830:intron
TTCTCCTGGCTGCTGGGGAT+AGG 0.305991 4_3:-55342395 Msa0648830:CDS
TTCGTCATTGCAGAAGTATT+TGG 0.307151 4_3:-55350352 Msa0648830:intron
TATGGCGGAATCAGAGTTAA+AGG 0.315185 4_3:-55350452 Msa0648830:intron
CGTGCAGTCAGATGAAGATT+TGG 0.320246 4_3:-55350776 Msa0648830:intron
ATTTGATCAGGTCAATGTTA+TGG 0.321936 4_3:-55343298 Msa0648830:intron
AATGCAATTTGCAGTGCATT+TGG 0.325383 4_3:+55347902 None:intergenic
AAAGGACAATCCAGATTATA+GGG 0.325952 4_3:-55342227 Msa0648830:CDS
TTTGGCGGTGCCGCTGGTGC+TGG 0.327421 4_3:+55350942 None:intergenic
TCCCCAGCAGCCAGGAGAAC+AGG 0.334078 4_3:+55342399 None:intergenic
TGTTCTCTACTTCCTCGTTT+TGG 0.335578 4_3:-55342642 Msa0648830:CDS
TGTGAGTGTGTTAAATTAAA+AGG 0.336064 4_3:+55351099 None:intergenic
ATTGGTGCAATTATGGGATT+AGG 0.338723 4_3:-55344449 Msa0648830:CDS
CCCCTGTTCTCCTGGCTGCT+GGG 0.345055 4_3:-55342401 Msa0648830:CDS
CCCCTATCACCAATTCTTGA+AGG 0.345401 4_3:-55342262 Msa0648830:CDS
ACTAGAATTGGTGCAATTAT+GGG 0.345863 4_3:-55344455 Msa0648830:CDS
CTCCCTCAGCAGACATTGTA+AGG 0.346118 4_3:+55350307 None:intergenic
CAAATATCCTTCACTTAACT+TGG 0.350252 4_3:+55347331 None:intergenic
TGAAAGCCGGTGATTGTCTT+AGG 0.351647 4_3:+55342435 None:intergenic
ATTACAAAACCTTCAAGAAT+TGG 0.353080 4_3:+55342253 None:intergenic
TGCACCTTGTATATATCTTC+AGG 0.356157 4_3:+55347269 None:intergenic
GGCTGACATATTATCAGTAT+TGG 0.356961 4_3:-55350331 Msa0648830:CDS
GTTATCTCCTTGGGTCTAAT+AGG 0.358044 4_3:-55343139 Msa0648830:CDS
GCCTTGGTCTTCTTTATCTT+GGG 0.359647 4_3:-55344111 Msa0648830:CDS
GTTGCCGGCGCGGTTAGGTT+CGG 0.361415 4_3:+55350969 None:intergenic
GTAGCAATGGCTGAAGAATT+AGG 0.361899 4_3:-55343587 Msa0648830:CDS
GCCCAAGGTCTTGTACATTT+GGG 0.363986 4_3:-55342943 Msa0648830:CDS
TGACATGGTTATCATTACTA+TGG 0.373993 4_3:+55344670 None:intergenic
TGCCTTCACTGCAATTGCAT+TGG 0.375145 4_3:-55344248 Msa0648830:CDS
GAAGATAGTTCGACTAGAAT+TGG 0.377228 4_3:-55344467 Msa0648830:CDS
GACTAGTGCTGCTGCAAGTC+TGG 0.377954 4_3:-55344840 Msa0648830:intron
GCCTCTATCAGTGCCTGTTC+GGG 0.382032 4_3:-55342496 Msa0648830:CDS
TAAGGCATATTATGAAACTA+TGG 0.383151 4_3:-55350470 Msa0648830:CDS
ACAAACAATGCTCGAATTGC+CGG 0.384804 4_3:-55343109 Msa0648830:CDS
TCATGTGCCTATGCTGGAAC+TGG 0.385983 4_3:-55343792 Msa0648830:CDS
AGCCTCTATCAGTGCCTGTT+CGG 0.386811 4_3:-55342497 Msa0648830:CDS
TTGCCGGCGCGGTTAGGTTC+GGG 0.387598 4_3:+55350970 None:intergenic
CGAAGAACGAGAAGTGTTGC+AGG 0.387775 4_3:-55347369 Msa0648830:CDS
TTCGTCTTTGGCGGTGCCGC+TGG 0.390264 4_3:+55350936 None:intergenic
CGACTTCTCCCTCTTGGCCT+TGG 0.391180 4_3:-55344127 Msa0648830:CDS
CATGGGGACATGAGTATGTT+AGG 0.392382 4_3:-55350110 Msa0648830:intron
TCATTCTACCCCTGTTCTCC+TGG 0.393262 4_3:-55342409 Msa0648830:CDS
GTAGTGGTTCTTCTGGAAAC+TGG 0.395865 4_3:-55344889 Msa0648830:CDS
TTAGAACATCTTCTACAGTA+TGG 0.397139 4_3:-55343542 Msa0648830:CDS
TCTCCTGGCTGCTGGGGATA+GGG 0.401494 4_3:-55342394 Msa0648830:CDS
CATCACTCTTCCCTATAATC+TGG 0.405215 4_3:+55342217 None:intergenic
AACCTTCAAGAATTGGTGAT+AGG 0.407353 4_3:+55342260 None:intergenic
TTTCACGCTAAATCGAACTT+AGG 0.407501 4_3:-55351021 Msa0648830:five_prime_UTR
CTTGATGGCCGTGCAAGTGC+TGG 0.408444 4_3:-55345120 Msa0648830:CDS
TCTTCTTTATCTTGGGAAGC+AGG 0.420669 4_3:-55344104 Msa0648830:intron
ACTGCTTGGCCAACCCGAAC+AGG 0.423439 4_3:+55342483 None:intergenic
GTTGTATGTTGAGAGGGTTC+AGG 0.424586 4_3:-55350734 Msa0648830:CDS
CGAGCAGTTCCTCTGGCACT+TGG 0.426143 4_3:-55343503 Msa0648830:CDS
ACAGGCAGCAGTTATCTCCT+TGG 0.429907 4_3:-55343149 Msa0648830:intron
CACCAAGGTCCTGCAGTCCT+TGG 0.430705 4_3:-55343620 Msa0648830:CDS
ACTGCAAATTGCATTGTTCA+TGG 0.433433 4_3:-55347894 Msa0648830:CDS
TGTTAATGCCGGATTTGGTC+AGG 0.436038 4_3:-55345043 Msa0648830:intron
TGCGGCAGCTTCGTCTTTGG+CGG 0.436686 4_3:+55350927 None:intergenic
GTTAATGCATTTGTTAATGC+CGG 0.439292 4_3:-55345054 Msa0648830:CDS
CGTAGAAACTTCAGTGGCTT+GGG 0.439539 4_3:+55350511 None:intergenic
CTCCCTCTGAACCTAGTAAT+CGG 0.440688 4_3:+55350142 None:intergenic
CTTACGCGACTTCTCCCTCT+TGG 0.441492 4_3:-55344133 Msa0648830:CDS
ATCATGGCTAAGTCTGCTTA+AGG 0.441554 4_3:+55343272 None:intergenic
GTGTCGATTAATTTGAAAGA+TGG 0.442501 4_3:-55342019 Msa0648830:three_prime_UTR
GAAGATCGAGAGCGAAGATC+TGG 0.445605 4_3:-55350899 Msa0648830:intron
AAACCTCACCTGCTCATTCT+GGG 0.446754 4_3:+55344409 None:intergenic
TGAAACATACACAAAATAGA+AGG 0.448647 4_3:+55343044 None:intergenic
AATGATAACCATGTCATTGC+TGG 0.449019 4_3:-55344663 Msa0648830:CDS
CAGGCAGCAGTTATCTCCTT+GGG 0.449890 4_3:-55343148 Msa0648830:CDS
GGCAACGGCGCCAGCACCAG+CGG 0.456358 4_3:-55350952 Msa0648830:CDS
TTCACGCTAAATCGAACTTA+GGG 0.456411 4_3:-55351020 Msa0648830:five_prime_UTR
GAAAGATGGTTTATTAATTG+TGG 0.457827 4_3:-55342005 Msa0648830:three_prime_UTR
AGCAGTAGACGTTGTTGGAC+AGG 0.459860 4_3:-55342466 Msa0648830:CDS
TCATTGTACCTGACCAAATC+CGG 0.459928 4_3:+55345035 None:intergenic
AGAGGGAGAAGTCGCGTAAG+AGG 0.462942 4_3:+55344136 None:intergenic
CTACTATCATGTGCCTATGC+TGG 0.463677 4_3:-55343798 Msa0648830:CDS
AATGTCTGCTGAGGGAGAAC+GGG 0.467324 4_3:-55350301 Msa0648830:intron
TTACTATGGGATGTTGACTC+TGG 0.470974 4_3:-55344717 Msa0648830:CDS
GCCACATTACGGTACTCTTA+AGG 0.471860 4_3:-55350488 Msa0648830:CDS
ATCAAAAGATCAACAGCCTC+TGG 0.472093 4_3:+55349547 None:intergenic
TCACACTTCCTCTTCTCCGA+TGG 0.473659 4_3:-55350995 Msa0648830:exon
TCCCAAATGTACAAGACCTT+GGG 0.474672 4_3:+55342942 None:intergenic
ATCACGTCAAGCGAAGCTTT+AGG 0.474727 4_3:+55344271 None:intergenic
ACCTTCAAGAATTGGTGATA+GGG 0.476467 4_3:+55342261 None:intergenic
CAGAGGGAGATATTGGTTCA+TGG 0.477824 4_3:-55350128 Msa0648830:CDS
AGTCTCAAATACCGATTACT+AGG 0.479190 4_3:-55350153 Msa0648830:CDS
TTTGGCTTTGAAGCAACAGC+TGG 0.479199 4_3:-55350758 Msa0648830:CDS
TGCTGGCGCCGTTGCCGGCG+CGG 0.483349 4_3:+55350959 None:intergenic
AGAGCAACCTTCTGCAACCC+GGG 0.485765 4_3:+55350703 None:intergenic
CCGTAGAAACTTCAGTGGCT+TGG 0.486666 4_3:+55350510 None:intergenic
AAGTTTCTACGGCCACATTA+CGG 0.488041 4_3:-55350499 Msa0648830:CDS
TTCCCAAATGTACAAGACCT+TGG 0.489170 4_3:+55342941 None:intergenic
CTGCCCTATCCCCAGCAGCC+AGG 0.494849 4_3:+55342391 None:intergenic
ATTAAAAGTCTTTGAAACTT+CGG 0.496334 4_3:+55343851 None:intergenic
AGAGGGAGATATTGGTTCAT+GGG 0.496959 4_3:-55350127 Msa0648830:CDS
GCCCAATGCAATTGCAGTGA+AGG 0.498300 4_3:+55344246 None:intergenic
TCCAATACTAGCATATCATC+TGG 0.498885 4_3:+55347962 None:intergenic
TATGGTGTCAGAAATTTGGC+TGG 0.499427 4_3:-55349925 Msa0648830:intron
TATTCGCCGAGCAGTTCCTC+TGG 0.500504 4_3:-55343510 Msa0648830:CDS
TGCAGTCCTTGGAATTGCTA+TGG 0.502997 4_3:-55343609 Msa0648830:CDS
CAATGTCTGCTGAGGGAGAA+CGG 0.504450 4_3:-55350302 Msa0648830:CDS
GTCATTGCTGGTGCATTACT+GGG 0.505397 4_3:-55344651 Msa0648830:CDS
ACACAATAGCTTTCATATCA+AGG 0.505784 4_3:+55342681 None:intergenic
GGTCTTGTACATTTGGGAAA+GGG 0.507186 4_3:-55342937 Msa0648830:CDS
GATCGGAGTGAGTCAGAGTT+GGG 0.508316 4_3:-55344163 Msa0648830:CDS
CCCTGTTCTCCTGGCTGCTG+GGG 0.508335 4_3:-55342400 Msa0648830:CDS
GGATTAGGAATTGCATATGC+TGG 0.510069 4_3:-55344434 Msa0648830:CDS
AAGAGCAACCTTCTGCAACC+CGG 0.510865 4_3:+55350702 None:intergenic
GATATGAAAGCTATTGTGTT+GGG 0.511246 4_3:-55342677 Msa0648830:CDS
TATATATCTTCAGGGGACTT+AGG 0.511864 4_3:+55347278 None:intergenic
GCACCTTGTATATATCTTCA+GGG 0.512615 4_3:+55347270 None:intergenic
ACCCGAACAGGCACTGATAG+AGG 0.514416 4_3:+55342495 None:intergenic
TGGCTTGGGCACTGAAGTCA+TGG 0.515550 4_3:+55350525 None:intergenic
GGATCGGAGTGAGTCAGAGT+TGG 0.515747 4_3:-55344164 Msa0648830:CDS
ACCAGATGATATGCTAGTAT+TGG 0.515944 4_3:-55347963 Msa0648830:CDS
TCATATTTACATTGATGGAT+CGG 0.517102 4_3:-55344180 Msa0648830:CDS
GCTTTAGGATCACTCAGAAT+AGG 0.517639 4_3:+55344286 None:intergenic
TGCATTGGGCTTGATTTACG+TGG 0.518309 4_3:-55344233 Msa0648830:CDS
CAACTTCTGAATCAGTATCA+TGG 0.519781 4_3:+55343256 None:intergenic
GAACCTAACCGCGCCGGCAA+CGG 0.523030 4_3:-55350967 Msa0648830:CDS
CTCCATGACTTCAATATCAC+GGG 0.523436 4_3:+55347301 None:intergenic
CTTTCAGTTACGATACAAGT+TGG 0.527671 4_3:-55344311 Msa0648830:intron
TCCTTGGGTCTAATAGGCGC+TGG 0.528692 4_3:-55343133 Msa0648830:CDS
CCCCAGCAGCCAGGAGAACA+GGG 0.529499 4_3:+55342400 None:intergenic
GCATCAGATTCTTCAAGTAG+TGG 0.529733 4_3:-55344905 Msa0648830:CDS
GTCCAACAACGTCTACTGCT+TGG 0.531076 4_3:+55342469 None:intergenic
AAAGAAGACCAAGGCCAAGA+GGG 0.534797 4_3:+55344119 None:intergenic
ATTGTTCATGGATAACCTGC+TGG 0.537779 4_3:-55347882 Msa0648830:intron
TGAAAGATTGCGAAGCATGC+CGG 0.538412 4_3:+55343090 None:intergenic
CACTTGCACCAGCACTTGCA+CGG 0.542212 4_3:+55345112 None:intergenic
AGGGTTCAGGATACTGACCC+CGG 0.543270 4_3:-55350721 Msa0648830:CDS
TCATGGAGCTTGTAGAAGTA+CGG 0.544317 4_3:+55350542 None:intergenic
TGCCCGTGATATTGAAGTCA+TGG 0.546113 4_3:-55347303 Msa0648830:CDS
GGCCAAGCAGTAGACGTTGT+TGG 0.547192 4_3:-55342471 Msa0648830:CDS
TTCGGGAGCCATCGGAGAAG+AGG 0.550433 4_3:+55350987 None:intergenic
AAGACACGGTCAGAATGATA+AGG 0.550929 4_3:+55342898 None:intergenic
CTATCAGTGCCTGTTCGGGT+TGG 0.551095 4_3:-55342492 Msa0648830:CDS
GCTGGTGCATTACTGGGAGT+TGG 0.551767 4_3:-55344645 Msa0648830:CDS
TTCCAAGGACTGCAGGACCT+TGG 0.552548 4_3:+55343618 None:intergenic
ATGGAGGTTTCTTGTTGCAG+AGG 0.552774 4_3:+55351152 None:intergenic
GATGTTGTTGACTGTGGATG+AGG 0.554247 4_3:-55342526 Msa0648830:CDS
AGGTCTTGTACATTTGGGAA+AGG 0.555099 4_3:-55342938 Msa0648830:CDS
AACAATTCCAAGTTAAGTGA+AGG 0.556109 4_3:-55347338 Msa0648830:CDS
CCTTCAAGAATTGGTGATAG+GGG 0.557370 4_3:+55342262 None:intergenic
TACTGACCCCGGGTTGCAGA+AGG 0.557812 4_3:-55350710 Msa0648830:CDS
TTGTAGGCAATGGCACTCCT+TGG 0.558145 4_3:-55344506 Msa0648830:intron
TGCTGGTTCCCAGAATGAGC+AGG 0.560900 4_3:-55344417 Msa0648830:intron
CCAAGCCACTGAAGTTTCTA+CGG 0.562286 4_3:-55350510 Msa0648830:CDS
CGGTTAGGTTCGGGAGCCAT+CGG 0.562440 4_3:+55350979 None:intergenic
TTGGAGAATTTAACAGATGG+AGG 0.563134 4_3:+55351136 None:intergenic
GTAGAAGATGTTCTAACGAT+CGG 0.567757 4_3:+55343549 None:intergenic
TCCACAGTCAACAACATCCT+CGG 0.571268 4_3:+55342531 None:intergenic
TCTTTCAAGCTATTACTACA+AGG 0.573652 4_3:-55343074 Msa0648830:CDS
ACTAGCATATCATCTGGTCC+AGG 0.575933 4_3:+55347968 None:intergenic
GGTCGTCCTAAGACAATCAC+CGG 0.576068 4_3:-55342441 Msa0648830:CDS
AGCTGGAGTTGTATGTTGAG+AGG 0.576584 4_3:-55350741 Msa0648830:CDS
GCTGGAGTTGTATGTTGAGA+GGG 0.577745 4_3:-55350740 Msa0648830:CDS
ACATACACAAAATAGAAGGC+TGG 0.579470 4_3:+55343048 None:intergenic
TGGAATTGCTATGGTAGCAA+TGG 0.582283 4_3:-55343600 Msa0648830:CDS
GGCCCTTACAATGTCTGCTG+AGG 0.582711 4_3:-55350310 Msa0648830:CDS
GTAGACGTTGTTGGACAGGC+AGG 0.584047 4_3:-55342462 Msa0648830:CDS
GCTCCATGACTTCAATATCA+CGG 0.591509 4_3:+55347300 None:intergenic
ACTTTGGAGAATTTAACAGA+TGG 0.591608 4_3:+55351133 None:intergenic
TGATATGAAAGCTATTGTGT+TGG 0.593763 4_3:-55342678 Msa0648830:CDS
GCATTGGGCTTGATTTACGT+GGG 0.594648 4_3:-55344232 Msa0648830:CDS
TGTATCTGACAAGTTCAGCT+AGG 0.595489 4_3:-55349370 Msa0648830:intron
GCCCTTACAATGTCTGCTGA+GGG 0.595569 4_3:-55350309 Msa0648830:CDS
CTACAGGTGCGGATTGCCCA+AGG 0.595817 4_3:-55342958 Msa0648830:intron
TACTGATTCAGAAGTTGCAA+TGG 0.600180 4_3:-55343250 Msa0648830:intron
TCAAGAATATGCAAAACGAC+AGG 0.600683 4_3:-55349893 Msa0648830:intron
AACATTCCCAGTTCCAGCAT+AGG 0.601552 4_3:+55343785 None:intergenic
GAGGGAGATATTGGTTCATG+GGG 0.601739 4_3:-55350126 Msa0648830:CDS
ATACCGATTACTAGGTTCAG+AGG 0.603273 4_3:-55350145 Msa0648830:CDS
TCCAGCGCCTATTAGACCCA+AGG 0.605628 4_3:+55343132 None:intergenic
GTCCCCTGAAGATATATACA+AGG 0.607347 4_3:-55347273 Msa0648830:intron
TACCGATTACTAGGTTCAGA+GGG 0.611712 4_3:-55350144 Msa0648830:CDS
ATAGCAATTCCAAGGACTGC+AGG 0.612981 4_3:+55343611 None:intergenic
TGGAACTGGGAATGTTCTCA+AGG 0.617089 4_3:-55343778 Msa0648830:intron
TTGCTACCATAGCAATTCCA+AGG 0.618346 4_3:+55343603 None:intergenic
TAAAGAAGACCAAGGCCAAG+AGG 0.621416 4_3:+55344118 None:intergenic
CACAGCAGACCAAGTGCCAG+AGG 0.629366 4_3:+55343494 None:intergenic
GCCTTAAGAGTACCGTAATG+TGG 0.634211 4_3:+55350487 None:intergenic
CATGTGCCTATGCTGGAACT+GGG 0.635630 4_3:-55343791 Msa0648830:CDS
GTAATGCACCAGCAATGACA+TGG 0.635873 4_3:+55344655 None:intergenic
TGTTCACAACATCTTGACAA+AGG 0.637361 4_3:-55343650 Msa0648830:CDS
GGGTTCAGGATACTGACCCC+GGG 0.638406 4_3:-55350720 Msa0648830:CDS
CCCAGCAGCCAGGAGAACAG+GGG 0.638606 4_3:+55342401 None:intergenic
GCAGCATAATGCTGAACCAG+AGG 0.639545 4_3:-55349563 Msa0648830:intron
TATTTGATGATGTATTATTG+CGG 0.640289 4_3:-55342041 Msa0648830:three_prime_UTR
GGTAGAATGAGTCTGAAAGC+CGG 0.642327 4_3:+55342422 None:intergenic
GCTGTGTATATCAAACCCAA+AGG 0.645766 4_3:-55343477 Msa0648830:intron
CATTAACAAAAGTAGCAGCA+AGG 0.648095 4_3:+55345070 None:intergenic
TGAAGAATTAGGTGTTGAGA+TGG 0.648729 4_3:-55343576 Msa0648830:CDS
GCTCCCGAACCTAACCGCGC+CGG 0.652018 4_3:-55350973 Msa0648830:CDS
AGGTTGCTCTTGAAAGCATG+AGG 0.652603 4_3:-55350690 Msa0648830:intron
GTAACAACAGGAAAGTGTTG+AGG 0.652898 4_3:-55343880 Msa0648830:intron
AACTAAATACTGTTCAGACA+CGG 0.656708 4_3:+55342166 None:intergenic
TTACGTGGGTTCTTGCAATG+AGG 0.658349 4_3:-55344218 Msa0648830:CDS
CACCTTGTATATATCTTCAG+GGG 0.666070 4_3:+55347271 None:intergenic
TCCCTCAGCAGACATTGTAA+GGG 0.666227 4_3:+55350308 None:intergenic
GAGACTCAAACAAACCTGCA+TGG 0.668674 4_3:+55342619 None:intergenic
GCCGAGGATGTTGTTGACTG+TGG 0.669421 4_3:-55342532 Msa0648830:CDS
GGCATATTATGAAACTATGG+CGG 0.673217 4_3:-55350467 Msa0648830:CDS
GACAAAGGTGAGATGCACCA+AGG 0.682675 4_3:-55343635 Msa0648830:CDS
AAACCTGCATGGCCAAAACG+AGG 0.682882 4_3:+55342630 None:intergenic
GGTCTTGCTGACAGCATGTG+AGG 0.684340 4_3:-55347732 Msa0648830:intron
GAGCAACCTTCTGCAACCCG+GGG 0.688966 4_3:+55350704 None:intergenic
CAAGTGCCAGAGGAACTGCT+CGG 0.690748 4_3:+55343504 None:intergenic
TCCCAAGATAAAGAAGACCA+AGG 0.693423 4_3:+55344110 None:intergenic
TGTGGCCGTAGAAACTTCAG+TGG 0.696714 4_3:+55350505 None:intergenic
CTTACGGTGATAGTAAGACA+CGG 0.711897 4_3:+55342884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - chr4_3:55346663-55346682 Msa0648830:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+GGG - chr4_3:55346663-55346682 Msa0648830:intron 0.0%
!!! GTATATTTAATATTTTTGTA+AGG - chr4_3:55343165-55343184 Msa0648830:intron 10.0%
!! ATAATTAAATTATGAGAATT+CGG + chr4_3:55344488-55344507 None:intergenic 10.0%
!! CATAATTTAATTATTAAGTA+AGG - chr4_3:55344494-55344513 Msa0648830:CDS 10.0%
!!! AACAATTATTAAAATTTTAC+AGG - chr4_3:55345173-55345192 Msa0648830:intron 10.0%
!!! TTTTCTTTATATATCATAAA+TGG - chr4_3:55346632-55346651 Msa0648830:intron 10.0%
!! GTAAAAAAATTATAAAAAGT+AGG - chr4_3:55346897-55346916 Msa0648830:intron 10.0%
!!! TATTTTAGTTAACAATTAAT+TGG - chr4_3:55347692-55347711 Msa0648830:CDS 10.0%
!!! ATTTTAGTTAACAATTAATT+GGG - chr4_3:55347693-55347712 Msa0648830:CDS 10.0%
!! TAAATTAAAAGGAAAAAAGT+GGG + chr4_3:55342063-55342082 None:intergenic 15.0%
!! TTAAATTAAAAGGAAAAAAG+TGG + chr4_3:55342064-55342083 None:intergenic 15.0%
!!! TATTGTATTTGTGTTTTATA+TGG - chr4_3:55343103-55343122 Msa0648830:CDS 15.0%
!!! ATTTAATATTTTTGTAAGGA+AGG - chr4_3:55343169-55343188 Msa0648830:intron 15.0%
!!! TTTAATATTTTTGTAAGGAA+GGG - chr4_3:55343170-55343189 Msa0648830:intron 15.0%
!!! AATCTTATGTTTTTTACTTA+TGG - chr4_3:55343227-55343246 Msa0648830:intron 15.0%
!! TAAAGAATGATTTATCATTA+TGG - chr4_3:55343885-55343904 Msa0648830:intron 15.0%
!! AAAAAACTTCAATAATAGAT+AGG - chr4_3:55344261-55344280 Msa0648830:CDS 15.0%
!!! TGATTTTTAATACATAATGA+AGG - chr4_3:55344982-55345001 Msa0648830:intron 15.0%
!!! TTCTATTTTTTTGTTTTGTT+TGG - chr4_3:55345124-55345143 Msa0648830:CDS 15.0%
!!! TCTATTTTTTTGTTTTGTTT+GGG - chr4_3:55345125-55345144 Msa0648830:CDS 15.0%
!!! AGTTGTTTAATTTTTGAAAA+CGG - chr4_3:55349197-55349216 Msa0648830:intron 15.0%
!! AAATACTATCAAAATGTAAA+AGG - chr4_3:55351042-55351061 Msa0648830:five_prime_UTR 15.0%
!! AATCCTCAACTATAAAATTA+GGG + chr4_3:55342510-55342529 None:intergenic 20.0%
!!! TTGTTTTTGTGTATTGAAAT+TGG - chr4_3:55342576-55342595 Msa0648830:intron 20.0%
!! TTCTATATTTAGAAATTGAG+TGG - chr4_3:55342898-55342917 Msa0648830:CDS 20.0%
!! TTGACAAAACAAACTTTAAA+AGG - chr4_3:55343770-55343789 Msa0648830:intron 20.0%
!! TAAATAACCAAATATTACGA+AGG - chr4_3:55344177-55344196 Msa0648830:CDS 20.0%
!!! TGGATTTTTTTAGTTATAAG+TGG - chr4_3:55345081-55345100 Msa0648830:CDS 20.0%
!! TTATGATTCAAATTGATGAA+AGG - chr4_3:55346022-55346041 Msa0648830:intron 20.0%
!!! GTGAATCATGTTTTATTATT+TGG - chr4_3:55346224-55346243 Msa0648830:intron 20.0%
!!! TCATGTTTTATTATTTGGTA+TGG - chr4_3:55346229-55346248 Msa0648830:intron 20.0%
!! ATGTGAAAAATTATAAGTGA+TGG + chr4_3:55346606-55346625 None:intergenic 20.0%
!!! AGAGAATTTTACATCAATTA+TGG + chr4_3:55346991-55347010 None:intergenic 20.0%
!! ATCATCATTGATCTAATTTA+TGG - chr4_3:55348370-55348389 Msa0648830:intron 20.0%
!! ACAGAAAAGGAAAAAATAAA+AGG + chr4_3:55348595-55348614 None:intergenic 20.0%
!!! TTTAATTTTTGAAAACGGTT+AGG - chr4_3:55349202-55349221 Msa0648830:intron 20.0%
!!! ATTAAAAGTCTTTGAAACTT+CGG + chr4_3:55349322-55349341 None:intergenic 20.0%
!! TACAAAAATGATAAAATGCA+GGG + chr4_3:55349726-55349745 None:intergenic 20.0%
!! ATACAAAAATGATAAAATGC+AGG + chr4_3:55349727-55349746 None:intergenic 20.0%
!! TTGTTGTAATAATTTCCAAT+CGG - chr4_3:55350401-55350420 Msa0648830:intron 20.0%
!!! AATAGTATATTACTTTTCTG+TGG + chr4_3:55350811-55350830 None:intergenic 20.0%
!!! TGAAGGTTTTGTAATTTTAA+AGG - chr4_3:55350925-55350944 Msa0648830:CDS 20.0%
!! AAATGAGAAAAACATGATTA+AGG + chr4_3:55350980-55350999 None:intergenic 20.0%
!!! TATTTGATGATGTATTATTG+CGG - chr4_3:55351129-55351148 Msa0648830:five_prime_UTR 20.0%
! TGTGAGTGTGTTAAATTAAA+AGG + chr4_3:55342074-55342093 None:intergenic 25.0%
!! TTCGAATTTTCACTCAATTT+AGG - chr4_3:55342312-55342331 Msa0648830:intron 25.0%
!! TCGAATTTTCACTCAATTTA+GGG - chr4_3:55342313-55342332 Msa0648830:intron 25.0%
!! AAACCCTAATTTTATAGTTG+AGG - chr4_3:55342504-55342523 Msa0648830:CDS 25.0%
! GAATCCTCAACTATAAAATT+AGG + chr4_3:55342511-55342530 None:intergenic 25.0%
! TGTATTGAAATTGGAAAGTA+TGG - chr4_3:55342585-55342604 Msa0648830:intron 25.0%
! TAAGGCATATTATGAAACTA+TGG - chr4_3:55342700-55342719 Msa0648830:CDS 25.0%
! TAAGTAATAGCATGGTATTA+TGG - chr4_3:55342777-55342796 Msa0648830:intron 25.0%
!! TTGCTATTGCAAATTTAGTT+TGG - chr4_3:55343373-55343392 Msa0648830:intron 25.0%
!! AATATCTCATATCCTTCTTT+TGG - chr4_3:55343652-55343671 Msa0648830:CDS 25.0%
! TATTCAGAAAGTGAACTTAA+CGG - chr4_3:55343687-55343706 Msa0648830:intron 25.0%
!!! ATGCAATCTTTTTTGTTGTT+AGG - chr4_3:55343717-55343736 Msa0648830:intron 25.0%
! TGGCCTACTTAAAAAATTAT+AGG - chr4_3:55343982-55344001 Msa0648830:intron 25.0%
!!! AGGCCTATAATTTTTTAAGT+AGG + chr4_3:55343988-55344007 None:intergenic 25.0%
! CAATTTAGTAGTAAGCATAT+TGG + chr4_3:55344118-55344137 None:intergenic 25.0%
! CAATATGCTTACTACTAAAT+TGG - chr4_3:55344116-55344135 Msa0648830:CDS 25.0%
! TAAATTGGTCAAATCTTATG+AGG - chr4_3:55344131-55344150 Msa0648830:CDS 25.0%
! AAATTGGTCAAATCTTATGA+GGG - chr4_3:55344132-55344151 Msa0648830:CDS 25.0%
! TAAATAGCTAAATCATACGA+AGG - chr4_3:55344226-55344245 Msa0648830:CDS 25.0%
!! CATGGACTATTTAGTTAAAT+AGG - chr4_3:55344312-55344331 Msa0648830:intron 25.0%
! TAAAGAGATGAAAGTAAGAA+TGG - chr4_3:55344669-55344688 Msa0648830:CDS 25.0%
! CAATATCTGAAAATATCCTT+AGG + chr4_3:55344842-55344861 None:intergenic 25.0%
! CATAATGAAGGTTTATTAGA+TGG - chr4_3:55344994-55345013 Msa0648830:intron 25.0%
! TGAATAGTTTAAAGGTTCAT+TGG - chr4_3:55345037-55345056 Msa0648830:intron 25.0%
!!! TTTTAAGGAACACTTCTTTA+AGG + chr4_3:55345391-55345410 None:intergenic 25.0%
! CAAGTATAATTAACGAGTTT+CGG - chr4_3:55346063-55346082 Msa0648830:intron 25.0%
! AGGTCAATAAAAATTGAACT+CGG + chr4_3:55346114-55346133 None:intergenic 25.0%
!!! TATGGATGTATTAGTTTTGT+GGG - chr4_3:55346247-55346266 Msa0648830:intron 25.0%
!!! GTTATGCATTTTTTGAATTC+AGG - chr4_3:55346344-55346363 Msa0648830:intron 25.0%
!!! ATTTTTTGAATTCAGGAATC+TGG - chr4_3:55346351-55346370 Msa0648830:intron 25.0%
! AATTCCATTTAGCAACAAAT+GGG + chr4_3:55346378-55346397 None:intergenic 25.0%
! AAATTCCATTTAGCAACAAA+TGG + chr4_3:55346379-55346398 None:intergenic 25.0%
!!! TCTGTTTCTGCTTATTTTAA+AGG + chr4_3:55346494-55346513 None:intergenic 25.0%
!!! TTTTTTTGGGGAAATATGAA+TGG - chr4_3:55346678-55346697 Msa0648830:intron 25.0%
!! ATTTTTCCACTAATTGATCT+AGG + chr4_3:55346765-55346784 None:intergenic 25.0%
! CAAAACATTAAATCCAATCA+AGG + chr4_3:55347075-55347094 None:intergenic 25.0%
!!! TGTTTTGTTATTAAGTTTCC+AGG - chr4_3:55347088-55347107 Msa0648830:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG - chr4_3:55347365-55347384 Msa0648830:CDS 25.0%
! AAAAAAAATAAACCAGTCCT+AGG - chr4_3:55347470-55347489 Msa0648830:intron 25.0%
!!! TGAGTATATTGCTTCTTTTT+TGG + chr4_3:55347662-55347681 None:intergenic 25.0%
!!! AAACTGGCTTTTTAAAAACA+AGG - chr4_3:55348297-55348316 Msa0648830:intron 25.0%
! TTATCCCTTGTATTATAACA+GGG - chr4_3:55348423-55348442 Msa0648830:intron 25.0%
! AAAAAATAAAAGGAACTCAC+AGG + chr4_3:55348585-55348604 None:intergenic 25.0%
!! ATCTTATTTGATTCCATTGT+AGG - chr4_3:55348648-55348667 Msa0648830:intron 25.0%
!!! CTTTTTCAATAAAATCACCA+AGG + chr4_3:55348684-55348703 None:intergenic 25.0%
! AGCAATCATATTTACATTGA+TGG - chr4_3:55348985-55349004 Msa0648830:intron 25.0%
!! TCATATTTACATTGATGGAT+CGG - chr4_3:55348990-55349009 Msa0648830:intron 25.0%
! ATACTTTGCAAACGTAAATA+AGG + chr4_3:55349167-55349186 None:intergenic 25.0%
!! ATTTTAAACATAAAAGGCTG+CGG + chr4_3:55349457-55349476 None:intergenic 25.0%
!! CCAGCAATTTTAAACATAAA+AGG + chr4_3:55349463-55349482 None:intergenic 25.0%
!!! CCTTTTATGTTTAAAATTGC+TGG - chr4_3:55349460-55349479 Msa0648830:intron 25.0%
! ATAGACAACAATGATTTAAG+AGG + chr4_3:55349959-55349978 None:intergenic 25.0%
! TCTTAAATCATTGTTGTCTA+TGG - chr4_3:55349958-55349977 Msa0648830:intron 25.0%
! TGAAACATACACAAAATAGA+AGG + chr4_3:55350129-55350148 None:intergenic 25.0%
!! GCAAAATAAGGTTTAACTTA+CGG + chr4_3:55350305-55350324 None:intergenic 25.0%
!!! ATTAAGACTAGCTTCAAATA+GGG + chr4_3:55350601-55350620 None:intergenic 25.0%
!!! AATTAAGACTAGCTTCAAAT+AGG + chr4_3:55350602-55350621 None:intergenic 25.0%
! ATTACAAAACCTTCAAGAAT+TGG + chr4_3:55350920-55350939 None:intergenic 25.0%
! GAAAGATGGTTTATTAATTG+TGG - chr4_3:55351165-55351184 Msa0648830:five_prime_UTR 25.0%
! ACTTTGGAGAATTTAACAGA+TGG + chr4_3:55342040-55342059 None:intergenic 30.0%
CTTTGTGTTAAGTAATAGCA+TGG - chr4_3:55342769-55342788 Msa0648830:intron 30.0%
TCGATTGTGTTATAGTTTGA+TGG - chr4_3:55342944-55342963 Msa0648830:CDS 30.0%
TTGTAAACAATCGAATCACT+AGG - chr4_3:55343143-55343162 Msa0648830:CDS 30.0%
! TACTTATGGTGTCAGAAATT+TGG - chr4_3:55343241-55343260 Msa0648830:intron 30.0%
AGATAATACCTTCATGTGAA+AGG + chr4_3:55343487-55343506 None:intergenic 30.0%
AGTTCACTTTCTGAATAGTT+CGG + chr4_3:55343684-55343703 None:intergenic 30.0%
!!! TCTTTTTTGTTGTTAGGTTG+AGG - chr4_3:55343723-55343742 Msa0648830:intron 30.0%
ATATTCTCTTAAAACTCCAG+AGG + chr4_3:55343835-55343854 None:intergenic 30.0%
! GACCTATTTCTTGAATTTCT+TGG - chr4_3:55343962-55343981 Msa0648830:intron 30.0%
TTGGTTATTTAGTAGCATGT+TGG + chr4_3:55344168-55344187 None:intergenic 30.0%
GATTAAGCCTTCGTAATATT+TGG + chr4_3:55344187-55344206 None:intergenic 30.0%
TGATTTAGCTATTTAGTAGC+AGG + chr4_3:55344221-55344240 None:intergenic 30.0%
AACTTCAATAATAGATAGGC+CGG - chr4_3:55344265-55344284 Msa0648830:CDS 30.0%
TAACTAAATAGTCCATGCTA+AGG + chr4_3:55344309-55344328 None:intergenic 30.0%
! AGCCTAGCCTTTATATTAAA+CGG - chr4_3:55344351-55344370 Msa0648830:intron 30.0%
!!! TAAGGCTTTTTTAAAGCCTA+TGG + chr4_3:55344409-55344428 None:intergenic 30.0%
TAAAAAGAGATGCAGTGATT+CGG - chr4_3:55344540-55344559 Msa0648830:intron 30.0%
GGAGACTTCAAATATGATTA+AGG - chr4_3:55344690-55344709 Msa0648830:CDS 30.0%
! AGTCTTGTATCTCAACAATA+GGG + chr4_3:55344766-55344785 None:intergenic 30.0%
GATATTGTAACACTAACAAC+TGG - chr4_3:55344855-55344874 Msa0648830:CDS 30.0%
CAATATGTTTCTTTAGTTGC+TGG - chr4_3:55344912-55344931 Msa0648830:CDS 30.0%
AATTGGGGTGAATAGTTTAA+AGG - chr4_3:55345029-55345048 Msa0648830:intron 30.0%
! AAATTTTACAGGTATCTTCC+TGG - chr4_3:55345184-55345203 Msa0648830:intron 30.0%
!! TGTGATTGATTTTCTCTCTA+TGG - chr4_3:55345353-55345372 Msa0648830:intron 30.0%
!! GAACACTTCTTTAAGGTATA+TGG + chr4_3:55345384-55345403 None:intergenic 30.0%
! TTTCAAACCACAAGCTTTTA+AGG + chr4_3:55345406-55345425 None:intergenic 30.0%
! TTGACAATTGATAACACTAG+AGG - chr4_3:55345662-55345681 Msa0648830:intron 30.0%
! TGACAATTGATAACACTAGA+GGG - chr4_3:55345663-55345682 Msa0648830:intron 30.0%
GACTTAAAATTTCACTCAGA+TGG - chr4_3:55345695-55345714 Msa0648830:intron 30.0%
! ATTTCACTCAGATGGTATTT+TGG - chr4_3:55345703-55345722 Msa0648830:intron 30.0%
! TTTCACTCAGATGGTATTTT+GGG - chr4_3:55345704-55345723 Msa0648830:intron 30.0%
! ATGGTTTTTGTGATGTATTC+AGG - chr4_3:55345738-55345757 Msa0648830:intron 30.0%
! TGGTTTTTGTGATGTATTCA+GGG - chr4_3:55345739-55345758 Msa0648830:intron 30.0%
AACAATTCCAAGTTAAGTGA+AGG - chr4_3:55345832-55345851 Msa0648830:intron 30.0%
CAAATATCCTTCACTTAACT+TGG + chr4_3:55345842-55345861 None:intergenic 30.0%
! TTATATTTCAGAGCATTAGC+TGG + chr4_3:55345987-55346006 None:intergenic 30.0%
CGAAACTCGTTAATTATACT+TGG + chr4_3:55346065-55346084 None:intergenic 30.0%
TAATTAACGAGTTTCGGTTT+AGG - chr4_3:55346069-55346088 Msa0648830:intron 30.0%
GGTCAATAAAAATTGAACTC+GGG + chr4_3:55346113-55346132 None:intergenic 30.0%
! TCTGGTAATCTAAAGTTCAT+CGG + chr4_3:55346153-55346172 None:intergenic 30.0%
AAGACCAAAAAAGGATAGAT+AGG - chr4_3:55346202-55346221 Msa0648830:intron 30.0%
!!! TTCACCTATCTATCCTTTTT+TGG + chr4_3:55346209-55346228 None:intergenic 30.0%
!!! GTATGGATGTATTAGTTTTG+TGG - chr4_3:55346246-55346265 Msa0648830:intron 30.0%
ATGCATAACATGAATCAACT+GGG + chr4_3:55346333-55346352 None:intergenic 30.0%
AATGCATAACATGAATCAAC+TGG + chr4_3:55346334-55346353 None:intergenic 30.0%
TAAAATAAGCAGAAACAGAC+AGG - chr4_3:55346495-55346514 Msa0648830:intron 30.0%
AAAATAAGCAGAAACAGACA+GGG - chr4_3:55346496-55346515 Msa0648830:intron 30.0%
TAACGATCAAATGTGTGAAA+TGG + chr4_3:55346858-55346877 None:intergenic 30.0%
!!! TGTTGTTTTCTTTCCTTGAT+TGG - chr4_3:55347059-55347078 Msa0648830:intron 30.0%
GAGTCTGCAAATTTAATCTA+TGG - chr4_3:55347267-55347286 Msa0648830:intron 30.0%
ATATAGTATAGCACTTATGG+TGG + chr4_3:55347603-55347622 None:intergenic 30.0%
TGGATATAGTATAGCACTTA+TGG + chr4_3:55347606-55347625 None:intergenic 30.0%
AGTGCTATACTATATCCAAA+AGG - chr4_3:55347608-55347627 Msa0648830:intron 30.0%
CAATTAATTGGGATGTATTG+AGG - chr4_3:55347704-55347723 Msa0648830:CDS 30.0%
CAATTCAGAGCAAAATATGA+GGG + chr4_3:55348010-55348029 None:intergenic 30.0%
ACAATTCAGAGCAAAATATG+AGG + chr4_3:55348011-55348030 None:intergenic 30.0%
!!! GCTCTGAATTGTTTTTTCTT+AGG - chr4_3:55348019-55348038 Msa0648830:intron 30.0%
! GTTAATGCATTTGTTAATGC+CGG - chr4_3:55348116-55348135 Msa0648830:intron 30.0%
!! CTTTTTAAAAACAAGGAGCA+TGG - chr4_3:55348304-55348323 Msa0648830:intron 30.0%
GTTATCCCTTGTATTATAAC+AGG - chr4_3:55348422-55348441 Msa0648830:intron 30.0%
CATACCCTGTTATAATACAA+GGG + chr4_3:55348430-55348449 None:intergenic 30.0%
TCATACCCTGTTATAATACA+AGG + chr4_3:55348431-55348450 None:intergenic 30.0%
! AACAGGGTATGATTTTACTA+TGG - chr4_3:55348439-55348458 Msa0648830:intron 30.0%
! ACAGGGTATGATTTTACTAT+GGG - chr4_3:55348440-55348459 Msa0648830:intron 30.0%
TGACATGGTTATCATTACTA+TGG + chr4_3:55348503-55348522 None:intergenic 30.0%
GTACATGTCATATACAGAAA+AGG + chr4_3:55348608-55348627 None:intergenic 30.0%
ACTAGAATTGGTGCAATTAT+GGG - chr4_3:55348715-55348734 Msa0648830:intron 30.0%
!! AATTTTTGAAAACGGTTAGG+AGG - chr4_3:55349205-55349224 Msa0648830:intron 30.0%
!! ATTTTTGAAAACGGTTAGGA+GGG - chr4_3:55349206-55349225 Msa0648830:intron 30.0%
ATAGTACTAACTCCATATTG+TGG - chr4_3:55349264-55349283 Msa0648830:intron 30.0%
TGTTGTTACATACCACAATA+TGG + chr4_3:55349279-55349298 None:intergenic 30.0%
ATATTGTGGTATGTAACAAC+AGG - chr4_3:55349278-55349297 Msa0648830:intron 30.0%
TTAGAACATCTTCTACAGTA+TGG - chr4_3:55349628-55349647 Msa0648830:intron 30.0%
! TCTGTCATATTTTCAGAACA+AGG + chr4_3:55349783-55349802 None:intergenic 30.0%
!! TGTTCTGAAAATATGACAGA+TGG - chr4_3:55349783-55349802 Msa0648830:intron 30.0%
! TGTTAACCCTTTATTTGATC+AGG - chr4_3:55349860-55349879 Msa0648830:intron 30.0%
CATTGACCTGATCAAATAAA+GGG + chr4_3:55349869-55349888 None:intergenic 30.0%
ACATTGACCTGATCAAATAA+AGG + chr4_3:55349870-55349889 None:intergenic 30.0%
ATTTGATCAGGTCAATGTTA+TGG - chr4_3:55349872-55349891 Msa0648830:intron 30.0%
AATCATTGTTGTCTATGGTT+TGG - chr4_3:55349963-55349982 Msa0648830:intron 30.0%
! AAACACATTTTGTATGCTAC+AGG - chr4_3:55350003-55350022 Msa0648830:intron 30.0%
TCTTTCAAGCTATTACTACA+AGG - chr4_3:55350096-55350115 Msa0648830:intron 30.0%
TAACTAAGACAAAAGCAGAT+GGG + chr4_3:55350327-55350346 None:intergenic 30.0%
TTAACTAAGACAAAAGCAGA+TGG + chr4_3:55350328-55350347 None:intergenic 30.0%
! ACGTTCCTTTCAATTTTTAC+AGG - chr4_3:55350428-55350447 Msa0648830:intron 30.0%
ACACAATAGCTTTCATATCA+AGG + chr4_3:55350492-55350511 None:intergenic 30.0%
TGATATGAAAGCTATTGTGT+TGG - chr4_3:55350492-55350511 Msa0648830:CDS 30.0%
GATATGAAAGCTATTGTGTT+GGG - chr4_3:55350493-55350512 Msa0648830:CDS 30.0%
!! TTAAGACTAGCTTCAAATAG+GGG + chr4_3:55350600-55350619 None:intergenic 30.0%
!!! GCTTGTTTTAAAGTATCACA+AGG + chr4_3:55350835-55350854 None:intergenic 30.0%
TAAAGGACAATCCAGATTAT+AGG - chr4_3:55350942-55350961 Msa0648830:CDS 30.0%
AAAGGACAATCCAGATTATA+GGG - chr4_3:55350943-55350962 Msa0648830:CDS 30.0%
AACTAAATACTGTTCAGACA+CGG + chr4_3:55351007-55351026 None:intergenic 30.0%
!! GTGTCGATTAATTTGAAAGA+TGG - chr4_3:55351151-55351170 Msa0648830:five_prime_UTR 30.0%
TTGGAGAATTTAACAGATGG+AGG + chr4_3:55342037-55342056 None:intergenic 35.0%
AAAGGAAAAAAGTGGGACTT+TGG + chr4_3:55342056-55342075 None:intergenic 35.0%
TTTCACGCTAAATCGAACTT+AGG - chr4_3:55342149-55342168 Msa0648830:three_prime_UTR 35.0%
TTCACGCTAAATCGAACTTA+GGG - chr4_3:55342150-55342169 Msa0648830:three_prime_UTR 35.0%
TGAGTGAAAATTCGAATCGA+GGG + chr4_3:55342308-55342327 None:intergenic 35.0%
TTGAGTGAAAATTCGAATCG+AGG + chr4_3:55342309-55342328 None:intergenic 35.0%
GGCATATTATGAAACTATGG+CGG - chr4_3:55342703-55342722 Msa0648830:CDS 35.0%
!! TTCGTCATTGCAGAAGTATT+TGG - chr4_3:55342818-55342837 Msa0648830:intron 35.0%
GGCTGACATATTATCAGTAT+TGG - chr4_3:55342839-55342858 Msa0648830:intron 35.0%
! AGTCTCAAATACCGATTACT+AGG - chr4_3:55343017-55343036 Msa0648830:intron 35.0%
GTGATTCGATTGTTTACAAC+AGG + chr4_3:55343142-55343161 None:intergenic 35.0%
! AAGGAAGGGTTGATTGAAAA+AGG - chr4_3:55343184-55343203 Msa0648830:intron 35.0%
TCAAGAATATGCAAAACGAC+AGG - chr4_3:55343277-55343296 Msa0648830:CDS 35.0%
AATATGCAAAACGACAGGTT+AGG - chr4_3:55343282-55343301 Msa0648830:CDS 35.0%
TACAGAAAATGCTGTAGTGA+GGG + chr4_3:55343327-55343346 None:intergenic 35.0%
ATACAGAAAATGCTGTAGTG+AGG + chr4_3:55343328-55343347 None:intergenic 35.0%
AGTTCCATGAGATCATCAAT+TGG + chr4_3:55343447-55343466 None:intergenic 35.0%
AATAGTTGCCTTTCACATGA+AGG - chr4_3:55343476-55343495 Msa0648830:intron 35.0%
GTTCACTTTCTGAATAGTTC+GGG + chr4_3:55343683-55343702 None:intergenic 35.0%
! TTGAACTTTTGCATCTTGTG+TGG - chr4_3:55343908-55343927 Msa0648830:intron 35.0%
GGCCAAGAAATTCAAGAAAT+AGG + chr4_3:55343967-55343986 None:intergenic 35.0%
TTAATATAAAGGCTAGGCTC+AGG + chr4_3:55344350-55344369 None:intergenic 35.0%
! GCCTAGCCTTTATATTAAAC+GGG - chr4_3:55344352-55344371 Msa0648830:intron 35.0%
!! AAGGTCATTTGTTATCATCC+TGG - chr4_3:55344513-55344532 Msa0648830:intron 35.0%
! TTGTTAGCTTAGCTGATACT+TGG - chr4_3:55344583-55344602 Msa0648830:intron 35.0%
GCAGCAAGAACAGTATTAAT+AGG + chr4_3:55344610-55344629 None:intergenic 35.0%
!! TATACAAGTGTCGAAGTCAT+TGG - chr4_3:55344639-55344658 Msa0648830:CDS 35.0%
!! ATACAAGTGTCGAAGTCATT+GGG - chr4_3:55344640-55344659 Msa0648830:CDS 35.0%
! GAGTCTTGTATCTCAACAAT+AGG + chr4_3:55344767-55344786 None:intergenic 35.0%
! GATTAGTTCCCTACTCAATT+AGG + chr4_3:55344795-55344814 None:intergenic 35.0%
!! ATGGAGTTTGACTTGCAATT+GGG - chr4_3:55345013-55345032 Msa0648830:intron 35.0%
GGTTCATTGGATATAGTCAT+TGG - chr4_3:55345050-55345069 Msa0648830:CDS 35.0%
AACTAAAAAAATCCAGAGCC+AGG + chr4_3:55345076-55345095 None:intergenic 35.0%
ACCAGATGATATGCTAGTAT+TGG - chr4_3:55345207-55345226 Msa0648830:intron 35.0%
TCCAATACTAGCATATCATC+TGG + chr4_3:55345211-55345230 None:intergenic 35.0%
AATGCAATTTGCAGTGCATT+TGG + chr4_3:55345271-55345290 None:intergenic 35.0%
ACTGCAAATTGCATTGTTCA+TGG - chr4_3:55345276-55345295 Msa0648830:intron 35.0%
AAGTGTTCCTTAAAAGCTTG+TGG - chr4_3:55345396-55345415 Msa0648830:intron 35.0%
! GGTTTGAAACTAACTAGTTG+CGG - chr4_3:55345417-55345436 Msa0648830:intron 35.0%
ATTCTGTGTTAGTACTTGTG+TGG - chr4_3:55345538-55345557 Msa0648830:intron 35.0%
ACAGTTACATCCATTATCAC+AGG + chr4_3:55345592-55345611 None:intergenic 35.0%
TATATATCTTCAGGGGACTT+AGG + chr4_3:55345895-55345914 None:intergenic 35.0%
CACCTTGTATATATCTTCAG+GGG + chr4_3:55345902-55345921 None:intergenic 35.0%
GCACCTTGTATATATCTTCA+GGG + chr4_3:55345903-55345922 None:intergenic 35.0%
TGCACCTTGTATATATCTTC+AGG + chr4_3:55345904-55345923 None:intergenic 35.0%
ATTGATGAAAGGAAACCAAG+TGG - chr4_3:55346033-55346052 Msa0648830:intron 35.0%
! TAATCTAAAGTTCATCGGGT+AGG + chr4_3:55346148-55346167 None:intergenic 35.0%
! CTGGTAATCTAAAGTTCATC+GGG + chr4_3:55346152-55346171 None:intergenic 35.0%
! TTGATGATTGCATGTGATTG+AGG - chr4_3:55346306-55346325 Msa0648830:intron 35.0%
AGATAGCCTAGATCAATTAG+TGG - chr4_3:55346756-55346775 Msa0648830:intron 35.0%
!!! GACATGTATTTTGAAACGGA+AGG + chr4_3:55346827-55346846 None:intergenic 35.0%
!! CAGCGACATGTATTTTGAAA+CGG + chr4_3:55346831-55346850 None:intergenic 35.0%
!! ATGCGACATGCATTTTGAAA+CGG - chr4_3:55346957-55346976 Msa0648830:intron 35.0%
CTCTACAAATAATTAGAGCC+TGG + chr4_3:55347109-55347128 None:intergenic 35.0%
! CAGGCTCTAATTATTTGTAG+AGG - chr4_3:55347107-55347126 Msa0648830:intron 35.0%
!! AGTTGTTGCTTTAGCAATGA+GGG + chr4_3:55347135-55347154 None:intergenic 35.0%
CAAGAAACATCCTGTTTAAC+AGG + chr4_3:55347170-55347189 None:intergenic 35.0%
!! TGTAACACACTGGTTTACAT+TGG - chr4_3:55347188-55347207 Msa0648830:intron 35.0%
TAAATTTGCAGACTCTACAC+AGG + chr4_3:55347262-55347281 None:intergenic 35.0%
! AGCACTAACAATGTTCCTTT+TGG + chr4_3:55347626-55347645 None:intergenic 35.0%
TATCGGTGCAGGATAATTAT+CGG - chr4_3:55347731-55347750 Msa0648830:intron 35.0%
GATACTTTCCTGATACGTAT+CGG - chr4_3:55347753-55347772 Msa0648830:intron 35.0%
ATACTTTCCTGATACGTATC+GGG - chr4_3:55347754-55347773 Msa0648830:intron 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG - chr4_3:55347881-55347900 Msa0648830:intron 35.0%
CATTAACAAAAGTAGCAGCA+AGG + chr4_3:55348103-55348122 None:intergenic 35.0%
CACAACAGTAATTGAATGGA+AGG + chr4_3:55348224-55348243 None:intergenic 35.0%
AATGATAACCATGTCATTGC+TGG - chr4_3:55348507-55348526 Msa0648830:intron 35.0%
TTTGATTCCATTGTAGGCAA+TGG - chr4_3:55348654-55348673 Msa0648830:intron 35.0%
GAAGATAGTTCGACTAGAAT+TGG - chr4_3:55348703-55348722 Msa0648830:intron 35.0%
GACTAGAATTGGTGCAATTA+TGG - chr4_3:55348714-55348733 Msa0648830:intron 35.0%
ATTGGTGCAATTATGGGATT+AGG - chr4_3:55348721-55348740 Msa0648830:intron 35.0%
! ATCTCAACAAGGTGTTACAA+GGG + chr4_3:55348792-55348811 None:intergenic 35.0%
CTTTCAGTTACGATACAAGT+TGG - chr4_3:55348859-55348878 Msa0648830:intron 35.0%
GAAGCAGGTATTTACTTGTT+TGG - chr4_3:55349081-55349100 Msa0648830:intron 35.0%
!! TTTTTGAAAACGGTTAGGAG+GGG - chr4_3:55349207-55349226 Msa0648830:intron 35.0%
ATATGGAGTTAGTACTATGC+TGG + chr4_3:55349262-55349281 None:intergenic 35.0%
! ATGCAGGTGCAAAATCTTTT+GGG - chr4_3:55349493-55349512 Msa0648830:intron 35.0%
TGTTCACAACATCTTGACAA+AGG - chr4_3:55349520-55349539 Msa0648830:intron 35.0%
!! TGAAGAATTAGGTGTTGAGA+TGG - chr4_3:55349594-55349613 Msa0648830:intron 35.0%
GTAGAAGATGTTCTAACGAT+CGG + chr4_3:55349624-55349643 None:intergenic 35.0%
CAACTTCTGAATCAGTATCA+TGG + chr4_3:55349917-55349936 None:intergenic 35.0%
!! TACTGATTCAGAAGTTGCAA+TGG - chr4_3:55349920-55349939 Msa0648830:intron 35.0%
ACATACACAAAATAGAAGGC+TGG + chr4_3:55350125-55350144 None:intergenic 35.0%
TCAGTGAACATTGTAACAAG+CGG + chr4_3:55350178-55350197 None:intergenic 35.0%
! GATTTTCTTTTCTACGCTAC+AGG - chr4_3:55350196-55350215 Msa0648830:intron 35.0%
AAAAGCAGATGGGCAAAATA+AGG + chr4_3:55350317-55350336 None:intergenic 35.0%
CAGATGCAAACTAATTGAGT+CGG - chr4_3:55350356-55350375 Msa0648830:intron 35.0%
GCTGTCCTGTAAAAATTGAA+AGG + chr4_3:55350436-55350455 None:intergenic 35.0%
! ACCTTCAAGAATTGGTGATA+GGG + chr4_3:55350912-55350931 None:intergenic 35.0%
! AACCTTCAAGAATTGGTGAT+AGG + chr4_3:55350913-55350932 None:intergenic 35.0%
!!! GCTCTCGATCTTCTTTTTTG+CGG + chr4_3:55342264-55342283 None:intergenic 40.0%
AAAATTCGAATCGAGGGCTT+TGG + chr4_3:55342302-55342321 None:intergenic 40.0%
TCATGGAGCTTGTAGAAGTA+CGG + chr4_3:55342631-55342650 None:intergenic 40.0%
AAGTTTCTACGGCCACATTA+CGG - chr4_3:55342671-55342690 Msa0648830:CDS 40.0%
! TATGGCGGAATCAGAGTTAA+AGG - chr4_3:55342718-55342737 Msa0648830:CDS 40.0%
! ATCGGTATTTGAGACTTTCC+TGG + chr4_3:55343013-55343032 None:intergenic 40.0%
! ATACCGATTACTAGGTTCAG+AGG - chr4_3:55343025-55343044 Msa0648830:intron 40.0%
! TACCGATTACTAGGTTCAGA+GGG - chr4_3:55343026-55343045 Msa0648830:intron 40.0%
!! AGAGGGAGATATTGGTTCAT+GGG - chr4_3:55343043-55343062 Msa0648830:intron 40.0%
! TATGGTGTCAGAAATTTGGC+TGG - chr4_3:55343245-55343264 Msa0648830:intron 40.0%
! TGTGCATTGATAGAGTGAAG+AGG - chr4_3:55343419-55343438 Msa0648830:intron 40.0%
ATCAAAAGATCAACAGCCTC+TGG + chr4_3:55343626-55343645 None:intergenic 40.0%
! AGAGGCTGTTGATCTTTTGA+TGG - chr4_3:55343625-55343644 Msa0648830:CDS 40.0%
GTTCGGGAAAAACCAAAAGA+AGG + chr4_3:55343667-55343686 None:intergenic 40.0%
TGTATCTGACAAGTTCAGCT+AGG - chr4_3:55343800-55343819 Msa0648830:CDS 40.0%
! GCTTCACTAGGCCTTTAAAA+AGG + chr4_3:55344060-55344079 None:intergenic 40.0%
!! GTAAGCATATTGGTGTTGCA+AGG + chr4_3:55344108-55344127 None:intergenic 40.0%
AGTAGCATGTTGGTGTACTT+GGG + chr4_3:55344158-55344177 None:intergenic 40.0%
TAGTAGCATGTTGGTGTACT+TGG + chr4_3:55344159-55344178 None:intergenic 40.0%
GAAGGCTTAATCACACCAAT+AGG - chr4_3:55344195-55344214 Msa0648830:CDS 40.0%
CTATTTAGTAGCAGGCCTAT+TGG + chr4_3:55344213-55344232 None:intergenic 40.0%
AGCTAAATCATACGAAGGCA+TGG - chr4_3:55344231-55344250 Msa0648830:CDS 40.0%
! GCTAAATCATACGAAGGCAT+GGG - chr4_3:55344232-55344251 Msa0648830:CDS 40.0%
AGTCCATGCTAAGGCTTATA+AGG + chr4_3:55344300-55344319 None:intergenic 40.0%
GCCCGTTTAATATAAAGGCT+AGG + chr4_3:55344356-55344375 None:intergenic 40.0%
AGCCTTTATATTAAACGGGC+CGG - chr4_3:55344356-55344375 Msa0648830:intron 40.0%
! TTTTAAATAGGCCAGGCCAT+AGG - chr4_3:55344390-55344409 Msa0648830:intron 40.0%
!!! CTTTTTTAAAGCCTATGGCC+TGG + chr4_3:55344404-55344423 None:intergenic 40.0%
!! GCTTTAAAAAAGCCTTAGCC+TGG - chr4_3:55344412-55344431 Msa0648830:intron 40.0%
!! TGCATCTCTTTTTAGTCTCC+AGG + chr4_3:55344534-55344553 None:intergenic 40.0%
ACTCCTAGTCCTAATTGAGT+AGG - chr4_3:55344783-55344802 Msa0648830:intron 40.0%
CTCCTAGTCCTAATTGAGTA+GGG - chr4_3:55344784-55344803 Msa0648830:intron 40.0%
TTCCCTACTCAATTAGGACT+AGG + chr4_3:55344789-55344808 None:intergenic 40.0%
AACCAAGTGACAAGAACCTA+AGG - chr4_3:55344823-55344842 Msa0648830:intron 40.0%
ATCCTTAGGTTCTTGTCACT+TGG + chr4_3:55344828-55344847 None:intergenic 40.0%
TATTTGTGCCTGTGACAGAA+TGG - chr4_3:55344882-55344901 Msa0648830:CDS 40.0%
! TGTTTCTTTAGTTGCTGGCT+TGG - chr4_3:55344917-55344936 Msa0648830:CDS 40.0%
!! GATGGAGTTTGACTTGCAAT+TGG - chr4_3:55345012-55345031 Msa0648830:intron 40.0%
!! TGGAGTTTGACTTGCAATTG+GGG - chr4_3:55345014-55345033 Msa0648830:intron 40.0%
ATTGGATATAGTCATTGGCC+TGG - chr4_3:55345055-55345074 Msa0648830:CDS 40.0%
ATTGTTCATGGATAACCTGC+TGG - chr4_3:55345288-55345307 Msa0648830:intron 40.0%
CAAGTACTAACACAGAATCC+AGG + chr4_3:55345536-55345555 None:intergenic 40.0%
! CTTGTGTGGCGAATAGTTTT+TGG - chr4_3:55345552-55345571 Msa0648830:intron 40.0%
AGTTTCCTTGCCTGTGATAA+TGG - chr4_3:55345579-55345598 Msa0648830:intron 40.0%
TACATCCATTATCACAGGCA+AGG + chr4_3:55345587-55345606 None:intergenic 40.0%
!!! ATTTTGGGACTCTCTCTTGA+TGG - chr4_3:55345719-55345738 Msa0648830:intron 40.0%
!! AATCACTTTTGAGCTTGACG+AGG - chr4_3:55345762-55345781 Msa0648830:intron 40.0%
! TTTTGAGCTTGACGAGGAAA+TGG - chr4_3:55345768-55345787 Msa0648830:intron 40.0%
CTCCATGACTTCAATATCAC+GGG + chr4_3:55345872-55345891 None:intergenic 40.0%
GCTCCATGACTTCAATATCA+CGG + chr4_3:55345873-55345892 None:intergenic 40.0%
GTCCCCTGAAGATATATACA+AGG - chr4_3:55345897-55345916 Msa0648830:intron 40.0%
TATGGGAGTCATATGTAGTC+AGG + chr4_3:55345964-55345983 None:intergenic 40.0%
! TTCAGAGCATTAGCTGGTAT+GGG + chr4_3:55345981-55346000 None:intergenic 40.0%
! TTTCAGAGCATTAGCTGGTA+TGG + chr4_3:55345982-55346001 None:intergenic 40.0%
TATACTTGGACTCAACCACT+TGG + chr4_3:55346051-55346070 None:intergenic 40.0%
TCGGTTTAGGTCGAATTGAA+AGG - chr4_3:55346082-55346101 Msa0648830:intron 40.0%
CGGTTTAGGTCGAATTGAAA+GGG - chr4_3:55346083-55346102 Msa0648830:intron 40.0%
TCGGGTAGGTAATTAAAGTC+AGG + chr4_3:55346134-55346153 None:intergenic 40.0%
TGGAGGGTTAAGACCAAAAA+AGG - chr4_3:55346193-55346212 Msa0648830:intron 40.0%
! TGGACCCATTTGTTGCTAAA+TGG - chr4_3:55346371-55346390 Msa0648830:intron 40.0%
!! GTGATGGATGTCAATTTCAG+TGG + chr4_3:55346590-55346609 None:intergenic 40.0%
!!! GACATGCATTTTGAAACGGA+GGG - chr4_3:55346961-55346980 Msa0648830:intron 40.0%
!! CAGTTGTTGCTTTAGCAATG+AGG + chr4_3:55347136-55347155 None:intergenic 40.0%
GGATGTTTCTTGTAACACAC+TGG - chr4_3:55347178-55347197 Msa0648830:intron 40.0%
TCCATATCGTATCTCGTATC+CGG + chr4_3:55347309-55347328 None:intergenic 40.0%
!! ATTTTCCCGTATCGACGTAT+CGG + chr4_3:55347344-55347363 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG - chr4_3:55347369-55347388 Msa0648830:CDS 40.0%
AATCAAGATACGATACGGCT+GGG - chr4_3:55347370-55347389 Msa0648830:CDS 40.0%
! GCACTTATGGTGGTCTTTTT+GGG + chr4_3:55347593-55347612 None:intergenic 40.0%
! AGCACTTATGGTGGTCTTTT+TGG + chr4_3:55347594-55347613 None:intergenic 40.0%
TAATTGGGATGTATTGAGGC+AGG - chr4_3:55347708-55347727 Msa0648830:CDS 40.0%
! TGATACGTATCGGGAAGTAT+CGG - chr4_3:55347763-55347782 Msa0648830:intron 40.0%
GATACTCTCCTGATACGTAT+CGG - chr4_3:55347822-55347841 Msa0648830:intron 40.0%
ATACTCTCCTGATACGTATC+GGG - chr4_3:55347823-55347842 Msa0648830:intron 40.0%
GAAGCTCCGATACTTCAAAA+TGG + chr4_3:55347890-55347909 None:intergenic 40.0%
!! TTGAAGTATCGGAGCTTCAT+AGG - chr4_3:55347892-55347911 Msa0648830:CDS 40.0%
TCTTAGGCACATTTGCTTGA+TGG - chr4_3:55348035-55348054 Msa0648830:intron 40.0%
! GCATTTGTTAATGCCGGATT+TGG - chr4_3:55348122-55348141 Msa0648830:intron 40.0%
TCATTGTACCTGACCAAATC+CGG + chr4_3:55348138-55348157 None:intergenic 40.0%
CCTGCACAACAGTAATTGAA+TGG + chr4_3:55348228-55348247 None:intergenic 40.0%
CCATTCAATTACTGTTGTGC+AGG - chr4_3:55348225-55348244 Msa0648830:intron 40.0%
GCATCAGATTCTTCAAGTAG+TGG - chr4_3:55348265-55348284 Msa0648830:intron 40.0%
TCTTCAAGTAGTGGTTCTTC+TGG - chr4_3:55348274-55348293 Msa0648830:intron 40.0%
!! TTACTATGGGATGTTGACTC+TGG - chr4_3:55348453-55348472 Msa0648830:intron 40.0%
GGATTAGGAATTGCATATGC+TGG - chr4_3:55348736-55348755 Msa0648830:intron 40.0%
! CATCTCAACAAGGTGTTACA+AGG + chr4_3:55348793-55348812 None:intergenic 40.0%
!! GCTTTAGGATCACTCAGAAT+AGG + chr4_3:55348887-55348906 None:intergenic 40.0%
! GCCTTGGTCTTCTTTATCTT+GGG - chr4_3:55349059-55349078 Msa0648830:intron 40.0%
TCCCAAGATAAAGAAGACCA+AGG + chr4_3:55349063-55349082 None:intergenic 40.0%
TCTTCTTTATCTTGGGAAGC+AGG - chr4_3:55349066-55349085 Msa0648830:intron 40.0%
TGTCAGTAATGCAACCACAA+TGG + chr4_3:55349143-55349162 None:intergenic 40.0%
!!! TTAGGAGGGGTTTTGCTATT+AGG - chr4_3:55349220-55349239 Msa0648830:intron 40.0%
!!! AGGGGTTTTGCTATTAGGTT+GGG - chr4_3:55349225-55349244 Msa0648830:intron 40.0%
!! GTAACAACAGGAAAGTGTTG+AGG - chr4_3:55349290-55349309 Msa0648830:intron 40.0%
! TGCGGCAGAAATCTCTATTT+TGG + chr4_3:55349439-55349458 None:intergenic 40.0%
! CATGCAGGTGCAAAATCTTT+TGG - chr4_3:55349492-55349511 Msa0648830:intron 40.0%
TTGCTACCATAGCAATTCCA+AGG + chr4_3:55349570-55349589 None:intergenic 40.0%
TGGAATTGCTATGGTAGCAA+TGG - chr4_3:55349570-55349589 Msa0648830:intron 40.0%
GTAGCAATGGCTGAAGAATT+AGG - chr4_3:55349583-55349602 Msa0648830:intron 40.0%
GCTGTGTATATCAAACCCAA+AGG - chr4_3:55349693-55349712 Msa0648830:intron 40.0%
ATCATGGCTAAGTCTGCTTA+AGG + chr4_3:55349901-55349920 None:intergenic 40.0%
GTTATCTCCTTGGGTCTAAT+AGG - chr4_3:55350031-55350050 Msa0648830:intron 40.0%
ACAAACAATGCTCGAATTGC+CGG - chr4_3:55350061-55350080 Msa0648830:intron 40.0%
TCCCAAATGTACAAGACCTT+GGG + chr4_3:55350231-55350250 None:intergenic 40.0%
TTCCCAAATGTACAAGACCT+TGG + chr4_3:55350232-55350251 None:intergenic 40.0%
! AGGTCTTGTACATTTGGGAA+AGG - chr4_3:55350232-55350251 Msa0648830:intron 40.0%
! GGTCTTGTACATTTGGGAAA+GGG - chr4_3:55350233-55350252 Msa0648830:intron 40.0%
AAGACACGGTCAGAATGATA+AGG + chr4_3:55350275-55350294 None:intergenic 40.0%
CTTACGGTGATAGTAAGACA+CGG + chr4_3:55350289-55350308 None:intergenic 40.0%
! TGTTCTCTACTTCCTCGTTT+TGG - chr4_3:55350528-55350547 Msa0648830:CDS 40.0%
! ACTAGCTTCAAATAGGGGAA+GGG + chr4_3:55350595-55350614 None:intergenic 40.0%
! CCTTCAAGAATTGGTGATAG+GGG + chr4_3:55350911-55350930 None:intergenic 40.0%
CATCACTCTTCCCTATAATC+TGG + chr4_3:55350956-55350975 None:intergenic 40.0%
ATGGAGGTTTCTTGTTGCAG+AGG + chr4_3:55342021-55342040 None:intergenic 45.0%
CGTGCAGTCAGATGAAGATT+TGG - chr4_3:55342394-55342413 Msa0648830:CDS 45.0%
!! TTTGGCTTTGAAGCAACAGC+TGG - chr4_3:55342412-55342431 Msa0648830:CDS 45.0%
AGCTGGAGTTGTATGTTGAG+AGG - chr4_3:55342429-55342448 Msa0648830:CDS 45.0%
GCTGGAGTTGTATGTTGAGA+GGG - chr4_3:55342430-55342449 Msa0648830:CDS 45.0%
GTTGTATGTTGAGAGGGTTC+AGG - chr4_3:55342436-55342455 Msa0648830:CDS 45.0%
! AGGTTGCTCTTGAAAGCATG+AGG - chr4_3:55342480-55342499 Msa0648830:CDS 45.0%
CGTAGAAACTTCAGTGGCTT+GGG + chr4_3:55342662-55342681 None:intergenic 45.0%
CCAAGCCACTGAAGTTTCTA+CGG - chr4_3:55342660-55342679 Msa0648830:CDS 45.0%
GCCACATTACGGTACTCTTA+AGG - chr4_3:55342682-55342701 Msa0648830:CDS 45.0%
!! GCCTTAAGAGTACCGTAATG+TGG + chr4_3:55342686-55342705 None:intergenic 45.0%
TCCCTCAGCAGACATTGTAA+GGG + chr4_3:55342865-55342884 None:intergenic 45.0%
CTCCCTCTGAACCTAGTAAT+CGG + chr4_3:55343031-55343050 None:intergenic 45.0%
CTAGGTTCAGAGGGAGATAT+TGG - chr4_3:55343035-55343054 Msa0648830:intron 45.0%
!! CAGAGGGAGATATTGGTTCA+TGG - chr4_3:55343042-55343061 Msa0648830:intron 45.0%
!! GAGGGAGATATTGGTTCATG+GGG - chr4_3:55343044-55343063 Msa0648830:intron 45.0%
CATGGGGACATGAGTATGTT+AGG - chr4_3:55343060-55343079 Msa0648830:CDS 45.0%
! GGCTGTTGATCTTTTGATGG+AGG - chr4_3:55343628-55343647 Msa0648830:CDS 45.0%
TCAGGTAATAGGCAAGGCTT+AGG + chr4_3:55344008-55344027 None:intergenic 45.0%
ATGAGCCTGTGTCAGGTAAT+AGG + chr4_3:55344019-55344038 None:intergenic 45.0%
CTTAGAAATGAGCCTGTGTC+AGG + chr4_3:55344026-55344045 None:intergenic 45.0%
CTGACACAGGCTCATTTCTA+AGG - chr4_3:55344024-55344043 Msa0648830:intron 45.0%
!! CTCATTTCTAAGGCCTAGTC+TGG - chr4_3:55344034-55344053 Msa0648830:intron 45.0%
!! GCCTAGTCTGGCCTTTTTAA+AGG - chr4_3:55344046-55344065 Msa0648830:intron 45.0%
! GCCTTTAAAAAGGCCAGACT+AGG + chr4_3:55344050-55344069 None:intergenic 45.0%
ATAGGCTTTCAGGCTTCACT+AGG + chr4_3:55344072-55344091 None:intergenic 45.0%
TCGGTGTGAAATAGGCTTTC+AGG + chr4_3:55344082-55344101 None:intergenic 45.0%
GAAAGCCTATTTCACACCGA+AGG - chr4_3:55344082-55344101 Msa0648830:intron 45.0%
!! TATTGGTGTTGCAAGGCCTT+CGG + chr4_3:55344101-55344120 None:intergenic 45.0%
TAATAGATAGGCCGGCCTAA+CGG - chr4_3:55344273-55344292 Msa0648830:CDS 45.0%
TAAGGCTTATAAGGCCCGTT+AGG + chr4_3:55344291-55344310 None:intergenic 45.0%
GCCTTTATATTAAACGGGCC+GGG - chr4_3:55344357-55344376 Msa0648830:intron 45.0%
ACCCGGCCCGTTTAATATAA+AGG + chr4_3:55344361-55344380 None:intergenic 45.0%
! ATTTAAAACCGAGCTCGACC+CGG + chr4_3:55344378-55344397 None:intergenic 45.0%
!!! GGTCGAGCTCGGTTTTAAAT+AGG - chr4_3:55344378-55344397 Msa0648830:intron 45.0%
!!! AGCTCGGTTTTAAATAGGCC+AGG - chr4_3:55344383-55344402 Msa0648830:intron 45.0%
ACACACACACACTCTCTTAG+GGG + chr4_3:55344448-55344467 None:intergenic 45.0%
CACACACACACACTCTCTTA+GGG + chr4_3:55344449-55344468 None:intergenic 45.0%
ACACACACACACACTCTCTT+AGG + chr4_3:55344450-55344469 None:intergenic 45.0%
!! ATGCAGTGATTCGGTGCTTT+AGG - chr4_3:55344549-55344568 Msa0648830:intron 45.0%
GTTTCAGTCCATTCTGTCAC+AGG + chr4_3:55344893-55344912 None:intergenic 45.0%
ACTAGCATATCATCTGGTCC+AGG + chr4_3:55345205-55345224 None:intergenic 45.0%
CACAGAATCCAGGACTTACA+TGG + chr4_3:55345526-55345545 None:intergenic 45.0%
!!! TGTGGCGAATAGTTTTTGGC+TGG - chr4_3:55345556-55345575 Msa0648830:intron 45.0%
TGCCCGTGATATTGAAGTCA+TGG - chr4_3:55345867-55345886 Msa0648830:intron 45.0%
TAAGCAGAAACAGACAGGGT+TGG - chr4_3:55346500-55346519 Msa0648830:intron 45.0%
!!! CGACATGCATTTTGAAACGG+AGG - chr4_3:55346960-55346979 Msa0648830:intron 45.0%
CTAAAGCAACAACTGTCTCG+AGG - chr4_3:55347141-55347160 Msa0648830:intron 45.0%
AACTTTGTGCAACCTGCTGA+AGG - chr4_3:55347234-55347253 Msa0648830:intron 45.0%
CCATATCGTATCTCGTATCC+GGG + chr4_3:55347308-55347327 None:intergenic 45.0%
GGATGTATTGAGGCAGGTAT+CGG - chr4_3:55347714-55347733 Msa0648830:CDS 45.0%
GATACTTCCCGATACGTATC+AGG + chr4_3:55347764-55347783 None:intergenic 45.0%
ATACTTGCCCGATACGTATC+AGG + chr4_3:55347833-55347852 None:intergenic 45.0%
GATACGTATCGGGCAAGTAT+CGG - chr4_3:55347833-55347852 Msa0648830:intron 45.0%
! TGTTAATGCCGGATTTGGTC+AGG - chr4_3:55348127-55348146 Msa0648830:intron 45.0%
! GTAGTGGTTCTTCTGGAAAC+TGG - chr4_3:55348281-55348300 Msa0648830:intron 45.0%
GTAATGCACCAGCAATGACA+TGG + chr4_3:55348518-55348537 None:intergenic 45.0%
TGTCATTGCTGGTGCATTAC+TGG - chr4_3:55348518-55348537 Msa0648830:intron 45.0%
GTCATTGCTGGTGCATTACT+GGG - chr4_3:55348519-55348538 Msa0648830:intron 45.0%
AAACCTCACCTGCTCATTCT+GGG + chr4_3:55348764-55348783 None:intergenic 45.0%
AAAACCTCACCTGCTCATTC+TGG + chr4_3:55348765-55348784 None:intergenic 45.0%
AAGCGACAAGCATCTCAACA+AGG + chr4_3:55348803-55348822 None:intergenic 45.0%
ATCACGTCAAGCGAAGCTTT+AGG + chr4_3:55348902-55348921 None:intergenic 45.0%
TGCCTTCACTGCAATTGCAT+TGG - chr4_3:55348922-55348941 Msa0648830:intron 45.0%
GCCTTCACTGCAATTGCATT+GGG - chr4_3:55348923-55348942 Msa0648830:intron 45.0%
TGCATTGGGCTTGATTTACG+TGG - chr4_3:55348937-55348956 Msa0648830:intron 45.0%
GCATTGGGCTTGATTTACGT+GGG - chr4_3:55348938-55348957 Msa0648830:intron 45.0%
TTACGTGGGTTCTTGCAATG+AGG - chr4_3:55348952-55348971 Msa0648830:intron 45.0%
AAAGAAGACCAAGGCCAAGA+GGG + chr4_3:55349054-55349073 None:intergenic 45.0%
TAAAGAAGACCAAGGCCAAG+AGG + chr4_3:55349055-55349074 None:intergenic 45.0%
! GGCCTTGGTCTTCTTTATCT+TGG - chr4_3:55349058-55349077 Msa0648830:intron 45.0%
!!! GAGGGGTTTTGCTATTAGGT+TGG - chr4_3:55349224-55349243 Msa0648830:intron 45.0%
CTACTATCATGTGCCTATGC+TGG - chr4_3:55349372-55349391 Msa0648830:CDS 45.0%
AACATTCCCAGTTCCAGCAT+AGG + chr4_3:55349388-55349407 None:intergenic 45.0%
TGGAACTGGGAATGTTCTCA+AGG - chr4_3:55349392-55349411 Msa0648830:CDS 45.0%
TGCTGGTGCTTATTTCATGC+AGG - chr4_3:55349477-55349496 Msa0648830:intron 45.0%
ATAGCAATTCCAAGGACTGC+AGG + chr4_3:55349562-55349581 None:intergenic 45.0%
TGCAGTCCTTGGAATTGCTA+TGG - chr4_3:55349561-55349580 Msa0648830:CDS 45.0%
ATGCAGGGTTGCAAACCTTT+GGG + chr4_3:55349711-55349730 None:intergenic 45.0%
AATGCAGGGTTGCAAACCTT+TGG + chr4_3:55349712-55349731 None:intergenic 45.0%
TGAAAGATTGCGAAGCATGC+CGG + chr4_3:55350083-55350102 None:intergenic 45.0%
! TCTTTTCTACGCTACAGGTG+CGG - chr4_3:55350201-55350220 Msa0648830:intron 45.0%
! TGCCCAAGGTCTTGTACATT+TGG - chr4_3:55350226-55350245 Msa0648830:intron 45.0%
! GCCCAAGGTCTTGTACATTT+GGG - chr4_3:55350227-55350246 Msa0648830:intron 45.0%
GAAAGGAACGTAATGCCGAT+TGG + chr4_3:55350419-55350438 None:intergenic 45.0%
GAGACTCAAACAAACCTGCA+TGG + chr4_3:55350554-55350573 None:intergenic 45.0%
!! GACTAGCTTCAAATAGGGGA+AGG + chr4_3:55350596-55350615 None:intergenic 45.0%
ATACTCTGTTGTAACAGCCG+AGG - chr4_3:55350622-55350641 Msa0648830:intron 45.0%
TCCACAGTCAACAACATCCT+CGG + chr4_3:55350642-55350661 None:intergenic 45.0%
! GATGTTGTTGACTGTGGATG+AGG - chr4_3:55350644-55350663 Msa0648830:intron 45.0%
TGAAAGCCGGTGATTGTCTT+AGG + chr4_3:55350738-55350757 None:intergenic 45.0%
GGTAGAATGAGTCTGAAAGC+CGG + chr4_3:55350751-55350770 None:intergenic 45.0%
CCCCTATCACCAATTCTTGA+AGG - chr4_3:55350908-55350927 Msa0648830:CDS 45.0%
!! AATTAAAATTAGTAAAAAAT+TGG + chr4_3:55343583-55343602 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+GGG - chr4_3:55346666-55346685 Msa0648830:intron 5.0%
!! TAAAAAAATTATAAAAAGTA+GGG - chr4_3:55346898-55346917 Msa0648830:intron 5.0%
!! ATATTTGTATATTAAAAAAA+TGG + chr4_3:55347444-55347463 None:intergenic 5.0%
!! AAAAAATAAAATTTAATCTT+TGG - chr4_3:55347800-55347819 Msa0648830:intron 5.0%
!! TCTCGCGAGTTGAGTTTTGC+TGG + chr4_3:55342097-55342116 None:intergenic 50.0%
TCACACTTCCTCTTCTCCGA+TGG - chr4_3:55342175-55342194 Msa0648830:three_prime_UTR 50.0%
! TTTTGCGGCAGCTTCGTCTT+TGG + chr4_3:55342249-55342268 None:intergenic 50.0%
GAAGATCGAGAGCGAAGATC+TGG - chr4_3:55342271-55342290 Msa0648830:CDS 50.0%
AAGAGCAACCTTCTGCAACC+CGG + chr4_3:55342471-55342490 None:intergenic 50.0%
CCGTAGAAACTTCAGTGGCT+TGG + chr4_3:55342663-55342682 None:intergenic 50.0%
TGTGGCCGTAGAAACTTCAG+TGG + chr4_3:55342668-55342687 None:intergenic 50.0%
GCCCTTACAATGTCTGCTGA+GGG - chr4_3:55342861-55342880 Msa0648830:intron 50.0%
CTCCCTCAGCAGACATTGTA+AGG + chr4_3:55342866-55342885 None:intergenic 50.0%
CAATGTCTGCTGAGGGAGAA+CGG - chr4_3:55342868-55342887 Msa0648830:intron 50.0%
AATGTCTGCTGAGGGAGAAC+GGG - chr4_3:55342869-55342888 Msa0648830:intron 50.0%
ACTTTGCCAATGACTCTGCC+AGG - chr4_3:55342992-55343011 Msa0648830:intron 50.0%
GACTTTCCTGGCAGAGTCAT+TGG + chr4_3:55343001-55343020 None:intergenic 50.0%
! GGCGCCAATTGATGATCTCA+TGG - chr4_3:55343440-55343459 Msa0648830:intron 50.0%
GCAGCATAATGCTGAACCAG+AGG - chr4_3:55343607-55343626 Msa0648830:CDS 50.0%
AGCTAGGTAAGTCAGACCTC+TGG - chr4_3:55343816-55343835 Msa0648830:CDS 50.0%
CCTGTGTCAGGTAATAGGCA+AGG + chr4_3:55344014-55344033 None:intergenic 50.0%
CCTTGCCTATTACCTGACAC+AGG - chr4_3:55344011-55344030 Msa0648830:intron 50.0%
! CAAGGCCTTCGGTGTGAAAT+AGG + chr4_3:55344090-55344109 None:intergenic 50.0%
AATAGATAGGCCGGCCTAAC+GGG - chr4_3:55344274-55344293 Msa0648830:CDS 50.0%
! GGGCCTTATAAGCCTTAGCA+TGG - chr4_3:55344294-55344313 Msa0648830:CDS 50.0%
ACACACACTCTCTTAGGGGT+GGG + chr4_3:55344444-55344463 None:intergenic 50.0%
! TATAGTCATTGGCCTGGCTC+TGG - chr4_3:55345061-55345080 Msa0648830:CDS 50.0%
!! CGAAGAACGAGAAGTGTTGC+AGG - chr4_3:55345801-55345820 Msa0648830:intron 50.0%
! ACCAGAGTCCTTTTTCCTGC+CGG - chr4_3:55346167-55346186 Msa0648830:intron 50.0%
!! TTTTTCCTGCCGGTACTGGA+GGG - chr4_3:55346177-55346196 Msa0648830:intron 50.0%
! TGGTCTTAACCCTCCAGTAC+CGG + chr4_3:55346189-55346208 None:intergenic 50.0%
! CTCGAGGCATCCTGTTAAAC+AGG - chr4_3:55347157-55347176 Msa0648830:intron 50.0%
TCTACACAGGTTCCTTCAGC+AGG + chr4_3:55347249-55347268 None:intergenic 50.0%
CCCGGATACGAGATACGATA+TGG - chr4_3:55347305-55347324 Msa0648830:CDS 50.0%
! ACTGCACCGATACGTCGATA+CGG - chr4_3:55347335-55347354 Msa0648830:CDS 50.0%
TGTTGATGTGCTACGAGCCT+AGG + chr4_3:55347490-55347509 None:intergenic 50.0%
GGGCAGAAGCAAATCAACAG+AGG + chr4_3:55347990-55348009 None:intergenic 50.0%
TGCTGCTGCAAGTCTGGTAT+GGG - chr4_3:55348336-55348355 Msa0648830:intron 50.0%
!! AGGAGTGCCATTGCCTACAA+TGG + chr4_3:55348664-55348683 None:intergenic 50.0%
TTGTAGGCAATGGCACTCCT+TGG - chr4_3:55348664-55348683 Msa0648830:intron 50.0%
GCCCAATGCAATTGCAGTGA+AGG + chr4_3:55348927-55348946 None:intergenic 50.0%
GATCGGAGTGAGTCAGAGTT+GGG - chr4_3:55349007-55349026 Msa0648830:intron 50.0%
TTTGGCACTCCCACCATACT+AGG - chr4_3:55349099-55349118 Msa0648830:intron 50.0%
TCATGTGCCTATGCTGGAAC+TGG - chr4_3:55349378-55349397 Msa0648830:CDS 50.0%
CATGTGCCTATGCTGGAACT+GGG - chr4_3:55349379-55349398 Msa0648830:CDS 50.0%
GACAAAGGTGAGATGCACCA+AGG - chr4_3:55349535-55349554 Msa0648830:intron 50.0%
ACAGGCAGCAGTTATCTCCT+TGG - chr4_3:55350021-55350040 Msa0648830:intron 50.0%
CAGGCAGCAGTTATCTCCTT+GGG - chr4_3:55350022-55350041 Msa0648830:intron 50.0%
! TTTTACAGGACAGCGCTTGC+AGG - chr4_3:55350442-55350461 Msa0648830:intron 50.0%
AAACCTGCATGGCCAAAACG+AGG + chr4_3:55350543-55350562 None:intergenic 50.0%
AGCCTCTATCAGTGCCTGTT+CGG - chr4_3:55350673-55350692 Msa0648830:intron 50.0%
GTCCAACAACGTCTACTGCT+TGG + chr4_3:55350704-55350723 None:intergenic 50.0%
AGCAGTAGACGTTGTTGGAC+AGG - chr4_3:55350704-55350723 Msa0648830:CDS 50.0%
GGTCGTCCTAAGACAATCAC+CGG - chr4_3:55350729-55350748 Msa0648830:CDS 50.0%
TCATTCTACCCCTGTTCTCC+TGG - chr4_3:55350761-55350780 Msa0648830:CDS 50.0%
AGGGTTCAGGATACTGACCC+CGG - chr4_3:55342449-55342468 Msa0648830:CDS 55.0%
AGAGCAACCTTCTGCAACCC+GGG + chr4_3:55342470-55342489 None:intergenic 55.0%
!! TGGCTTGGGCACTGAAGTCA+TGG + chr4_3:55342648-55342667 None:intergenic 55.0%
GGCCCTTACAATGTCTGCTG+AGG - chr4_3:55342860-55342879 Msa0648830:intron 55.0%
GCTTATAAGGCCCGTTAGGC+CGG + chr4_3:55344287-55344306 None:intergenic 55.0%
GGTGGGAATAGTCCAGGCTA+AGG + chr4_3:55344427-55344446 None:intergenic 55.0%
CTTAGGGGTGGGAATAGTCC+AGG + chr4_3:55344433-55344452 None:intergenic 55.0%
CACACACACTCTCTTAGGGG+TGG + chr4_3:55344445-55344464 None:intergenic 55.0%
ATAACCTGCTGGTGCGACAC+TGG - chr4_3:55345299-55345318 Msa0648830:intron 55.0%
AATTCCAGTGTCGCACCAGC+AGG + chr4_3:55345306-55345325 None:intergenic 55.0%
GGTCTTGCTGACAGCATGTG+AGG - chr4_3:55345438-55345457 Msa0648830:intron 55.0%
CTTGCACGCCATGTAAGTCC+TGG - chr4_3:55345515-55345534 Msa0648830:intron 55.0%
ACCGGCAGGAAAAAGGACTC+TGG + chr4_3:55346171-55346190 None:intergenic 55.0%
! GTCCTTTTTCCTGCCGGTAC+TGG - chr4_3:55346173-55346192 Msa0648830:intron 55.0%
!! CTCCAGTACCGGCAGGAAAA+AGG + chr4_3:55346178-55346197 None:intergenic 55.0%
!! CTTTTTCCTGCCGGTACTGG+AGG - chr4_3:55346176-55346195 Msa0648830:intron 55.0%
TGGTTGTGCTCTGTGAAGCC+CGG - chr4_3:55347287-55347306 Msa0648830:CDS 55.0%
! CTGCACCGATACGTCGATAC+GGG - chr4_3:55347336-55347355 Msa0648830:CDS 55.0%
ATGTGCTACGAGCCTAGGAC+TGG + chr4_3:55347485-55347504 None:intergenic 55.0%
!! ATTGAGGCAGGTATCGGTGC+AGG - chr4_3:55347720-55347739 Msa0648830:CDS 55.0%
!! TATCGGGCAAGTATCGGTGC+AGG - chr4_3:55347839-55347858 Msa0648830:intron 55.0%
!! AGTATCGGTGCAGGATACGC+AGG - chr4_3:55347848-55347867 Msa0648830:intron 55.0%
! GTATCGGTGCAGGATACGCA+GGG - chr4_3:55347849-55347868 Msa0648830:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG - chr4_3:55347850-55347869 Msa0648830:intron 55.0%
CACTTGCACCAGCACTTGCA+CGG + chr4_3:55348061-55348080 None:intergenic 55.0%
! GACTAGTGCTGCTGCAAGTC+TGG - chr4_3:55348330-55348349 Msa0648830:intron 55.0%
! GTGCTGCTGCAAGTCTGGTA+TGG - chr4_3:55348335-55348354 Msa0648830:intron 55.0%
GCTGGTGCATTACTGGGAGT+TGG - chr4_3:55348525-55348544 Msa0648830:intron 55.0%
!! TGCTGGTTCCCAGAATGAGC+AGG - chr4_3:55348753-55348772 Msa0648830:intron 55.0%
GTTCCCAGAATGAGCAGGTG+AGG - chr4_3:55348758-55348777 Msa0648830:intron 55.0%
GGATCGGAGTGAGTCAGAGT+TGG - chr4_3:55349006-55349025 Msa0648830:intron 55.0%
AGAGGGAGAAGTCGCGTAAG+AGG + chr4_3:55349037-55349056 None:intergenic 55.0%
CTTACGCGACTTCTCCCTCT+TGG - chr4_3:55349037-55349056 Msa0648830:intron 55.0%
ACTCCCACCATACTAGGTCC+AGG - chr4_3:55349105-55349124 Msa0648830:intron 55.0%
CTCCCACCATACTAGGTCCA+GGG - chr4_3:55349106-55349125 Msa0648830:intron 55.0%
TGCCCTGGACCTAGTATGGT+GGG + chr4_3:55349111-55349130 None:intergenic 55.0%
ACCATACTAGGTCCAGGGCA+GGG - chr4_3:55349111-55349130 Msa0648830:intron 55.0%
TTCCAAGGACTGCAGGACCT+TGG + chr4_3:55349555-55349574 None:intergenic 55.0%
TATTCGCCGAGCAGTTCCTC+TGG - chr4_3:55349660-55349679 Msa0648830:intron 55.0%
CAAGTGCCAGAGGAACTGCT+CGG + chr4_3:55349669-55349688 None:intergenic 55.0%
TCCTTGGGTCTAATAGGCGC+TGG - chr4_3:55350037-55350056 Msa0648830:intron 55.0%
TCCAGCGCCTATTAGACCCA+AGG + chr4_3:55350041-55350060 None:intergenic 55.0%
!! CTTCCTCGTTTTGGCCATGC+AGG - chr4_3:55350537-55350556 Msa0648830:CDS 55.0%
! GCCGAGGATGTTGTTGACTG+TGG - chr4_3:55350638-55350657 Msa0648830:intron 55.0%
GCCTCTATCAGTGCCTGTTC+GGG - chr4_3:55350674-55350693 Msa0648830:intron 55.0%
!! ACCCGAACAGGCACTGATAG+AGG + chr4_3:55350678-55350697 None:intergenic 55.0%
CTATCAGTGCCTGTTCGGGT+TGG - chr4_3:55350678-55350697 Msa0648830:intron 55.0%
GGCCAAGCAGTAGACGTTGT+TGG - chr4_3:55350699-55350718 Msa0648830:CDS 55.0%
GTAGACGTTGTTGGACAGGC+AGG - chr4_3:55350708-55350727 Msa0648830:CDS 55.0%
TTCGGGAGCCATCGGAGAAG+AGG + chr4_3:55342186-55342205 None:intergenic 60.0%
CGGTTAGGTTCGGGAGCCAT+CGG + chr4_3:55342194-55342213 None:intergenic 60.0%
TGCGGCAGCTTCGTCTTTGG+CGG + chr4_3:55342246-55342265 None:intergenic 60.0%
GGGTTCAGGATACTGACCCC+GGG - chr4_3:55342450-55342469 Msa0648830:CDS 60.0%
TACTGACCCCGGGTTGCAGA+AGG - chr4_3:55342460-55342479 Msa0648830:CDS 60.0%
GAGCAACCTTCTGCAACCCG+GGG + chr4_3:55342469-55342488 None:intergenic 60.0%
!! CTTAACCCTCCAGTACCGGC+AGG + chr4_3:55346185-55346204 None:intergenic 60.0%
! CTTGATGGCCGTGCAAGTGC+TGG - chr4_3:55348050-55348069 Msa0648830:intron 60.0%
CGACTTCTCCCTCTTGGCCT+TGG - chr4_3:55349043-55349062 Msa0648830:intron 60.0%
CTGCCCTGGACCTAGTATGG+TGG + chr4_3:55349112-55349131 None:intergenic 60.0%
CACCATACTAGGTCCAGGGC+AGG - chr4_3:55349110-55349129 Msa0648830:intron 60.0%
ACCCTGCCCTGGACCTAGTA+TGG + chr4_3:55349115-55349134 None:intergenic 60.0%
TACTAGGTCCAGGGCAGGGT+TGG - chr4_3:55349115-55349134 Msa0648830:intron 60.0%
CAATGGATCCAACCCTGCCC+TGG + chr4_3:55349126-55349145 None:intergenic 60.0%
GGGCAGGGTTGGATCCATTG+TGG - chr4_3:55349126-55349145 Msa0648830:intron 60.0%
CACCAAGGTCCTGCAGTCCT+TGG - chr4_3:55349550-55349569 Msa0648830:CDS 60.0%
CGAGCAGTTCCTCTGGCACT+TGG - chr4_3:55349667-55349686 Msa0648830:intron 60.0%
CACAGCAGACCAAGTGCCAG+AGG + chr4_3:55349679-55349698 None:intergenic 60.0%
! CTACAGGTGCGGATTGCCCA+AGG - chr4_3:55350212-55350231 Msa0648830:intron 60.0%
AGGGGAAGGGAGACAGAGAG+AGG + chr4_3:55350582-55350601 None:intergenic 60.0%
ACTGCTTGGCCAACCCGAAC+AGG + chr4_3:55350690-55350709 None:intergenic 60.0%
TTCTCCTGGCTGCTGGGGAT+AGG - chr4_3:55350775-55350794 Msa0648830:intron 60.0%
TCTCCTGGCTGCTGGGGATA+GGG - chr4_3:55350776-55350795 Msa0648830:intron 60.0%
TTGCCGGCGCGGTTAGGTTC+GGG + chr4_3:55342203-55342222 None:intergenic 65.0%
GTTGCCGGCGCGGTTAGGTT+CGG + chr4_3:55342204-55342223 None:intergenic 65.0%
! GAACCTAACCGCGCCGGCAA+CGG - chr4_3:55342203-55342222 Msa0648830:exon 65.0%
!! TTCGTCTTTGGCGGTGCCGC+TGG + chr4_3:55342237-55342256 None:intergenic 65.0%
TAAACGGGCCGGGTCGAGCT+CGG - chr4_3:55344367-55344386 Msa0648830:intron 65.0%
ACCCCTGTTCTCCTGGCTGC+TGG - chr4_3:55350768-55350787 Msa0648830:CDS 65.0%
CCCAGCAGCCAGGAGAACAG+GGG + chr4_3:55350772-55350791 None:intergenic 65.0%
CCCCTGTTCTCCTGGCTGCT+GGG - chr4_3:55350769-55350788 Msa0648830:CDS 65.0%
CCCCAGCAGCCAGGAGAACA+GGG + chr4_3:55350773-55350792 None:intergenic 65.0%
CCCTGTTCTCCTGGCTGCTG+GGG - chr4_3:55350770-55350789 Msa0648830:CDS 65.0%
TCCCCAGCAGCCAGGAGAAC+AGG + chr4_3:55350774-55350793 None:intergenic 65.0%
GCTCCCGAACCTAACCGCGC+CGG - chr4_3:55342197-55342216 Msa0648830:three_prime_UTR 70.0%
!! TTTGGCGGTGCCGCTGGTGC+TGG + chr4_3:55342231-55342250 None:intergenic 70.0%
CTGCCCTATCCCCAGCAGCC+AGG + chr4_3:55350782-55350801 None:intergenic 70.0%
!! GCTGGTGCTGGCGCCGTTGC+CGG + chr4_3:55342219-55342238 None:intergenic 75.0%
GGCAACGGCGCCAGCACCAG+CGG - chr4_3:55342218-55342237 Msa0648830:exon 75.0%
! GCGCCGTTGCCGGCGCGGTT+AGG + chr4_3:55342209-55342228 None:intergenic 80.0%
! TGCTGGCGCCGTTGCCGGCG+CGG + chr4_3:55342214-55342233 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55342002 55351190 55342002 ID=Msa0648830;Name=Msa0648830
chr4_3 mRNA 55342002 55351190 55342002 ID=Msa0648830-mRNA-1;Parent=Msa0648830;Name=Msa0648830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=192|0.95|1|1|0.95|1|24|217|864
chr4_3 exon 55342002 55342291 55342002 ID=Msa0648830-mRNA-1:exon:14170;Parent=Msa0648830-mRNA-1
chr4_3 exon 55342375 55342553 55342375 ID=Msa0648830-mRNA-1:exon:14169;Parent=Msa0648830-mRNA-1
chr4_3 exon 55342634 55342742 55342634 ID=Msa0648830-mRNA-1:exon:14168;Parent=Msa0648830-mRNA-1
chr4_3 exon 55342889 55342974 55342889 ID=Msa0648830-mRNA-1:exon:14167;Parent=Msa0648830-mRNA-1
chr4_3 exon 55343054 55343167 55343054 ID=Msa0648830-mRNA-1:exon:14166;Parent=Msa0648830-mRNA-1
chr4_3 exon 55343251 55343310 55343251 ID=Msa0648830-mRNA-1:exon:14165;Parent=Msa0648830-mRNA-1
chr4_3 exon 55343478 55343693 55343478 ID=Msa0648830-mRNA-1:exon:14164;Parent=Msa0648830-mRNA-1
chr4_3 exon 55343779 55343892 55343779 ID=Msa0648830-mRNA-1:exon:14163;Parent=Msa0648830-mRNA-1
chr4_3 exon 55344105 55344326 55344105 ID=Msa0648830-mRNA-1:exon:14162;Parent=Msa0648830-mRNA-1
chr4_3 exon 55344418 55344522 55344418 ID=Msa0648830-mRNA-1:exon:14161;Parent=Msa0648830-mRNA-1
chr4_3 exon 55344608 55344748 55344608 ID=Msa0648830-mRNA-1:exon:14160;Parent=Msa0648830-mRNA-1
chr4_3 exon 55344841 55344945 55344841 ID=Msa0648830-mRNA-1:exon:14159;Parent=Msa0648830-mRNA-1
chr4_3 exon 55345044 55345151 55345044 ID=Msa0648830-mRNA-1:exon:14158;Parent=Msa0648830-mRNA-1
chr4_3 exon 55347274 55347432 55347274 ID=Msa0648830-mRNA-1:exon:14157;Parent=Msa0648830-mRNA-1
chr4_3 exon 55347666 55347740 55347666 ID=Msa0648830-mRNA-1:exon:14156;Parent=Msa0648830-mRNA-1
chr4_3 exon 55347883 55347997 55347883 ID=Msa0648830-mRNA-1:exon:14155;Parent=Msa0648830-mRNA-1
chr4_3 exon 55349371 55349453 55349371 ID=Msa0648830-mRNA-1:exon:14154;Parent=Msa0648830-mRNA-1
chr4_3 exon 55349543 55349581 55349543 ID=Msa0648830-mRNA-1:exon:14153;Parent=Msa0648830-mRNA-1
chr4_3 exon 55349894 55349936 55349894 ID=Msa0648830-mRNA-1:exon:14152;Parent=Msa0648830-mRNA-1
chr4_3 exon 55350111 55350178 55350111 ID=Msa0648830-mRNA-1:exon:14151;Parent=Msa0648830-mRNA-1
chr4_3 exon 55350302 55350361 55350302 ID=Msa0648830-mRNA-1:exon:14150;Parent=Msa0648830-mRNA-1
chr4_3 exon 55350453 55350573 55350453 ID=Msa0648830-mRNA-1:exon:14149;Parent=Msa0648830-mRNA-1
chr4_3 exon 55350691 55350791 55350691 ID=Msa0648830-mRNA-1:exon:14148;Parent=Msa0648830-mRNA-1
chr4_3 exon 55350900 55351190 55350900 ID=Msa0648830-mRNA-1:exon:14147;Parent=Msa0648830-mRNA-1
chr4_3 five_prime_UTR 55350999 55351190 55350999 ID=Msa0648830-mRNA-1:five_prime_utr;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55350900 55350998 55350900 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55350691 55350791 55350691 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55350453 55350573 55350453 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55350302 55350361 55350302 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55350111 55350178 55350111 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55349894 55349936 55349894 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55349543 55349581 55349543 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55349371 55349453 55349371 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55347883 55347997 55347883 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55347666 55347740 55347666 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55347274 55347432 55347274 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55345044 55345151 55345044 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55344841 55344945 55344841 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55344608 55344748 55344608 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55344418 55344522 55344418 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55344105 55344326 55344105 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55343779 55343892 55343779 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55343478 55343693 55343478 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55343251 55343310 55343251 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55343054 55343167 55343054 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55342889 55342974 55342889 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55342634 55342742 55342634 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55342375 55342553 55342375 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 CDS 55342219 55342291 55342219 ID=Msa0648830-mRNA-1:cds;Parent=Msa0648830-mRNA-1
chr4_3 three_prime_UTR 55342002 55342218 55342002 ID=Msa0648830-mRNA-1:three_prime_utr;Parent=Msa0648830-mRNA-1
Gene Sequence

>Msa0648830

ATGGCTCCCGAACCTAACCGCGCCGGCAACGGCGCCAGCACCAGCGGCACCGCCAAAGACGAAGCTGCCGCAAAAAAGAAGATCGAGAGCGAAGATCTGTCAGATGAAGATTTGGCTTTGAAGCAACAGCTGGAGTTGTATGTTGAGAGGGTTCAGGATACTGACCCCGGGTTGCAGAAGGTTGCTCTTGAAAGCATGAGACAAGAAATCCGTACTTCTACAAGCTCCATGACTTCAGTGCCCAAGCCACTGAAGTTTCTACGGCCACATTACGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGAGTTAAAGAAGTATTTGGCTGACATATTATCAGTATTGGCCCTTACAATGTCTGCTGAGGGAGAACGGGAAAGTCTCAAATACCGATTACTAGGTTCAGAGGGAGATATTGGTTCATGGGGACATGAGTATGTTAGAAATTTGGCTGGAGAAATTGCTCAAGAATATGCAAAACGACAGCATAATGCTGAACCAGAGGCTGTTGATCTTTTGATGGAGGTTGAGGACTTAGATATGTTGACTGAGCATGTTGACAAAACAAACTTTAAAAGGACTTGCTTGTATCTGACAAGTTCAGCTAGGTATCTTCCTGGACCAGATGATATGCTAGTATTGGACATTGCATTTTCAATCTATCTAAAATTTGAAGAATTTCCAAATGCACTGCAAATTGCATTGTTCATGGATAACCTGCTGCATGTGAGGACAGTGTTCACTTCTTGTCATGATGTGCTGCGAAAGAAGCAATTCTGTTACATACTTGCACGCCATGGAATCACTTTTGAGCTTGACGAGGAAATGGTTAACGATGACGAAGAACGAGAAGTGTTGCAGGATATCATCAACAATTCCAAGTTAAGTGAAGGATATTTGACTCTTGCCCGTGATATTGAAGTCATGGAGCCTAAGTCCCCTGAAGATATATACAAGGCACATTTGCTTGATGGCCGTGCAAGTGCTGGTGCAAGTGTTGACTCAGCTAGACAGAACCTTGCTGCTACTTTTGTTAATGCATTTGTTAATGCCGGATTTGGTCAGGATAAGTTAATGACTGTTGCATCAGATTCTTCAAGTAGTGGTTCTTCTGGAAACTGGCTTTTTAAAAACAAGGAGCATGGAAAGACTAGTGCTGCTGCAAGTCTGGGTATGATTTTACTATGGGATGTTGACTCTGGACTTGCACAACTTGACAAATACTTCCATAGTAATGATAACCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTCAATTGTAGTATCAAGAATGACTGTGATCCTGCAATGGCACTCCTTGGTGATTTTATTGAAAAAGAAGATAGTTCGACTAGAATTGGTGCAATTATGGGATTAGGAATTGCATATGCTGGTTCCCAGAATGAGCAGTTACGATACAAGTTGGCACCTATTCTGAGTGATCCTAAAGCTTCGCTTGACGTGATTGCCTTCACTGCAATTGCATTGGGCTTGATTTACGTGGGTTCTTGCAATGAGGAAGTTGCTCAAGCAATCATATTTACATTGATGGATCGGAGTGAGTCAGAGTTGGGAGAGCCTCTTACGCGACTTCTCCCTCTTGGCCTTGGTCTTCTTTATCTTGGGAAGCAGGAAAGTGTTGAGGCAACTGCCGAAGTTTCAAAGACTTTTAATGAAAAAATAAGAAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGGAATGTTCTCAAGGTGCAAAATCTTTTGGGTCATTGTTCACAACATCTTGACAAAGGTGAGATGCACCAAGGTCCTGCAGTCCTTGGAATTGCTATGGTAGCAATGGCTGAAGAATTAGGTGTTGAGATGGCTATCCGATCGTTAGAACATCTTCTACAGTATGGAGAGCAGAATATTCGCCGAGCAGTTCCTCTGGCACTTGGTCTGCTGTGTATATCAAACCCAAAGGTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGATACTGATTCAGAAGTTGCAATGGCAGCAGTTATCTCCTTGGGTCTAATAGGCGCTGGAACAAACAATGCTCGAATTGCCGGCATGCTTCGCAATCTTTCAAGCTATTACTACAAGGATACCAGCCTTCTATTTTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGACTATTAACACTTAATCCTTATCATTCTGACCGTGTCTTACTATCACCGACAGCGCTTGCAGGACTAATTACTATGTTGCATGCATGCCTTGATATGAAAGCTATTGTGTTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCCATGCAGCCGAGGATGTTGTTGACTGTGGATGAGGACTTGAAGCCTCTATCAGTGCCTGTTCGGGTTGGCCAAGCAGTAGACGTTGTTGGACAGGCAGGTCGTCCTAAGACAATCACCGGCTTTCAGACTCATTCTACCCCTGTTCTCCTGGCTGCTGGGGATAGGGCAGAGCTAGCCACAGAAAAATATCTTCCCCTATCACCAATTCTTGAAGGTTTTGTAATTTTAAAGGACAATCCAGATTATAGGGAAGAGTGA
Protein sequence

>Msa0648830

MAPEPNRAGNGASTSGTAKDEAAAKKKIESEDLSDEDLALKQQLELYVERVQDTDPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMAESELKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQHNAEPEAVDLLMEVEDLDMLTEHVDKTNFKRTCLYLTSSARYLPGPDDMLVLDIAFSIYLKFEEFPNALQIALFMDNLLHVRTVFTSCHDVLRKKQFCYILARHGITFELDEEMVNDDEEREVLQDIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASDSSSSGSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDFIEKEDSSTRIGAIMGLGIAYAGSQNEQLRYKLAPILSDPKASLDVIAFTAIALGLIYVGSCNEEVAQAIIFTLMDRSESELGEPLTRLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGEMHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRVLLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDEDLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYLPLSPILEGFVILKDNPDYREE*